-- dump date 20111121_015337 -- class Genbank::CDS -- table cds_note -- id note YP_004624851.1 COGs: COG0593 ATPase involved in DNA replication initiation; InterProIPR020591:IPR013317:IPR013159:IPR001957:IPR 003593:IPR018312; KEGG: dat:HRM2_18560 DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: chromosomal replication initiator protein DnaA; IMG reference gene:2505283282; PFAM: DNA polymerase III polC-type N-terminus; domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_004624852.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113:IPR016166:IPR020904; KEGG: sfu:Sfum_0534 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase domain protein; SPTR: FAD linked oxidase domain protein; manually curated; IMG reference gene:2505283283; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD YP_004624853.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: nde:NIDE0547 putative TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative uncharacterized protein; IMG reference gene:2505283284; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004624854.1 COGs: COG2984 ABC-type uncharacterized transport system periplasmic component; KEGG: gur:Gura_2427 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283285; PFAM: ABC transporter substrate binding protein YP_004624855.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR004358:IPR003660:IPR003661:IPR003594:IPR 005467; KEGG: geo:Geob_1632 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: Cell cycle histidine kinase CckA; IMG reference gene:2505283286; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004624856.1 COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR000581:IPR004404:IPR020558; KEGG: sat:SYN_01708 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; IMG reference gene:2505283287; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase YP_004624857.1 COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: drt:Dret_1408 nitrogen-fixing NifU domain protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: Nitrogen-fixing NifU domain protein; IMG reference gene:2505283288; PFAM: NifU-like domain YP_004624858.1 InterPro IPR006110:IPR003716; KEGG: sfu:Sfum_1758 DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; SPTR: DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; IMG reference gene:2505283289; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit YP_004624859.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR003095:IPR001623:IPR001305:IPR002939:IPR 012724:IPR018253; KEGG: sfu:Sfum_1756 chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Chaperone protein dnaJ; TIGRFAM: chaperone protein DnaJ; IMG reference gene:2505283290; PFAM: DnaJ C terminal region; DnaJ domain; DnaJ central domain (4 repeats); TIGRFAM: chaperone protein DnaJ YP_004624860.1 COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: cyc:PCC7424_0979 molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC; SPTR: GTP cyclohydrolase subunit MoaC; TIGRFAM: molybdenum cofactor biosynthesis protein C; IMG reference gene:2505283291; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC YP_004624861.1 COGs: COG1734 DnaK suppressor protein; InterPro IPR000962:IPR012784:IPR020458; KEGG: geo:Geob_3702 transcriptional regulator, TraR/DksA family; SPTR: Transcriptional regulator, TraR/DksA family; TIGRFAM: RNA polymerase-binding protein DksA; IMG reference gene:2505283292; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: RNA polymerase-binding protein DksA YP_004624862.1 COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300; KEGG: nde:NIDE3392 glycoside hydrolase family 57 protein; PFAM: glycoside hydrolase family 57; SPTR: Glycoside hydrolase, family 57; IMG reference gene:2505283293; PFAM: Glycosyl hydrolase family 57 YP_004624863.1 COGs: COG1085 Galactose-1-phosphate uridylyltransferase; InterPro IPR005850:IPR001937; KEGG: dak:DaAHT2_1705 galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase; SPTR: Galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; IMG reference gene:2505283294; PFAM: Galactose-1-phosphate uridyl transferase, C-terminal domain; Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 1 YP_004624864.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dak:DaAHT2_1706 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; IMG reference gene:2505283295; PFAM: Response regulator receiver domain YP_004624865.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: chy:CHY_1057 hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Conserved domain protein; IMG reference gene:2505283296; PFAM: NAD dependent epimerase/dehydratase family YP_004624866.1 COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterPro IPR020441:IPR002078:IPR002197:IPR003593; KEGG: acp:A2cp1_2835 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; IMG reference gene:2505283297; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004624867.1 COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845:IPR011268:IPR011270; KEGG: dak:DaAHT2_0643 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine or other phosphorylase family 1; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; IMG reference gene:2505283298; PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family YP_004624868.1 COGs: COG1530 Ribonuclease G and E; InterPro IPR003029:IPR019307:IPR004659:IPR018247; KEGG: gsu:GSU3239 ribonuclease G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; SPTR: Ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; IMG reference gene:2505283299; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family YP_004624869.1 InterPro IPR002629; KEGG: dat:HRM2_37800 hypothetical protein; PFAM: Methionine synthase vitamin-B12 independent; SPTR: Putative uncharacterized protein; IMG reference gene:2505283300; PFAM: Cobalamin-independent synthase, Catalytic domain YP_004624870.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505283301 YP_004624871.1 InterPro IPR001623; KEGG: ttr:Tter_1000 heat shock protein DnaJ domain protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283302; PFAM: DnaJ domain YP_004624872.1 COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: dol:Dole_0896 HipA domain-containing protein; PFAM: HipA domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283303; PFAM: HipA-like N-terminal domain; HipA-like C-terminal domain YP_004624873.1 InterPro IPR011701; KEGG: glo:Glov_0894 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Multidrug resistance protein 1; IMG reference gene:2505283304; PFAM: Major Facilitator Superfamily YP_004624874.1 COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterProIPR006318:IPR002192:IPR008279:IPR000121:IPR 006319:IPR018274; KEGG: dak:DaAHT2_0891 phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; SPTR: Phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; IMG reference gene:2505283305; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: phosphoenolpyruvate synthase YP_004624875.1 KEGG: kol:Kole_0506 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283306; PFAM: Uncharacterized protein conserved in archaea (DUF2250) YP_004624876.1 IMG reference gene:2505283308 YP_004624877.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839:IPR004723:IPR001917; KEGG: cch:Cag_0079 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; IMG reference gene:2505283309; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase YP_004624878.1 COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814:IPR005815; KEGG: amu:Amuc_0493 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; SPTR: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; IMG reference gene:2505283310; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase YP_004624879.1 KEGG: sdl:Sdel_1843 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283311 YP_004624880.1 COGs: COG0502 Biotin synthase; InterPro IPR007197:IPR010722:IPR002684:IPR006638; KEGG: chy:CHY_0889 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Biotin synthase; TIGRFAM: biotin synthase; IMG reference gene:2505283312; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase YP_004624881.1 COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: dak:DaAHT2_0014 protein of unknown function DUF164; PFAM: protein of unknown function DUF164; SPTR: Putative uncharacterized protein; IMG reference gene:2505283313; PFAM: Putative zinc ribbon domain YP_004624882.1 COGs: COG0327 conserved hypothetical protein; InterPro IPR002678:IPR017221; KEGG: mta:Moth_0626 hypothetical protein; PFAM: protein of unknown function DUF34; SPTR: Putative uncharacterized protein; IMG reference gene:2505283314; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family YP_004624883.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR000943:IPR009042:IPR007627:IPR007624:IPR 007630:IPR014284:IPR012760; KEGG: hoh:Hoch_6393 RNA polymerase, sigma 70 subunit, RpoD subfamily; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; IMG reference gene:2505283316; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain YP_004624884.1 COGs: COG0358 DNA primase; InterProIPR002694:IPR013264:IPR006171:IPR019475:IPR 006295:IPR006154; KEGG: dak:DaAHT2_2321 DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; DNA primase, DnaB-helicase binding domain; SMART: Toprim sub domain-containing protein; SPTR: DNA primase; TIGRFAM: DNA primase; IMG reference gene:2505283317; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core YP_004624885.1 COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR000432:IPR002625:IPR005747:IPR007696; KEGG: ssp:SSP1651 recombination and DNA strand exchange inhibitor protein; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2; SPTR: MutS2 protein; TIGRFAM: MutS2 family protein; IMG reference gene:2505283318; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein YP_004624886.1 InterPro IPR001911:IPR018278; KEGG: ppd:Ppro_3053 30S ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; IMG reference gene:2505283319; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21 YP_004624887.1 COGs: COG0009 Putative translation factor (SUA5); InterPro IPR006070:IPR005145:IPR004388:IPR010923; KEGG: mif:Metin_0755 SUA5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain-containing protein; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; IMG reference gene:2505283320; PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_004624888.1 COGs: COG0824 thioesterase; InterPro IPR006683:IPR006684; KEGG: ade:Adeh_1639 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; SPTR: 4-hydroxybenzoyl-CoA thioesterase; IMG reference gene:2505283321; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; tol-pal system-associated acyl-CoA thioesterase YP_004624889.1 COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR006027:IPR001678:IPR004573:IPR018314; KEGG: gbm:Gbem_3528 sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; SPTR: Sun protein; TIGRFAM: sun protein; IMG reference gene:2505283322; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB; NOL1/NOP2/sun family putative RNA methylase YP_004624890.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505283323 YP_004624891.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR004033; KEGG: dak:DaAHT2_0570 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; IMG reference gene:2505283324; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases YP_004624892.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR001176:IPR004839:IPR005958:IPR004838; KEGG: aba:Acid345_1458 aminotransferase; PFAM: aminotransferase class I and II; SPTR: Aminotransferase; TIGRFAM: tyrosine/nicotianamine aminotransferase; IMG reference gene:2505283325; PFAM: Aminotransferase class I and II; TIGRFAM: tyrosine aminotransferase, eukaryotic; tyrosine/nicotianamine aminotransferases YP_004624893.1 COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis.; InterPro IPR011642:IPR011415; KEGG: ter:Tery_2909 nucleoside recognition; PFAM: nucleoside recognition domain protein; SPTR: Nucleoside recognition; IMG reference gene:2505283326; PFAM: Nucleoside recognition YP_004624894.1 COGs: COG1691 NCAIR mutase (PurE)-related protein; InterPro IPR000031; KEGG: dal:Dalk_0112 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; SPTR: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; IMG reference gene:2505283327; PFAM: AIR carboxylase YP_004624895.1 KEGG: pth:PTH_1373 serine protease inhibitor; SPTR: Putative uncharacterized protein; IMG reference gene:2505283328 YP_004624896.1 COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: cbe:Cbei_0291 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; IMG reference gene:2505283329; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase YP_004624897.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR013099:IPR003148:IPR006037; KEGG: gme:Gmet_0063 TrkA family potassium uptake protein; PFAM: TrkA-N domain protein; Ion transport 2 domain protein ; TrkA-C domain protein; SPTR: Potassium uptake protein, TrkA family; IMG reference gene:2505283330; PFAM: TrkA-N domain; Ion channel; TrkA-C domain YP_004624898.1 COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001672; KEGG: srm:SRM_00085 putative transaldolase phosphoglucose isomerase; PFAM: phosphoglucose isomerase (PGI); SPTR: Putative Transaldolase Phosphoglucose isomerase; IMG reference gene:2505283331; PFAM: Phosphoglucose isomerase YP_004624899.1 KEGG: dak:DaAHT2_2418 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283332 YP_004624900.1 COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651:IPR011761; KEGG: dak:DaAHT2_2417 RimK domain protein ATP-grasp; PFAM: RimK domain protein ATP-grasp; SPTR: Putative uncharacterized protein; IMG reference gene:2505283333; PFAM: RimK-like ATP-grasp domain YP_004624901.1 KEGG: adg:Adeg_0943 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283334 YP_004624902.1 COGs: COG0063 sugar kinase; InterPro IPR000631:IPR017953; KEGG: tye:THEYE_A1504 hypothetical protein; PFAM: protein of unknown function UPF0031; SPTR: Putative uncharacterized protein; IMG reference gene:2505283335; PFAM: Carbohydrate kinase YP_004624903.1 KEGG: dol:Dole_3247 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283336; PFAM: Protein of unknown function (DUF3343) YP_004624904.1 InterPro IPR001455; KEGG: tye:THEYE_A1506 hypothetical protein; PFAM: SirA-like domain-containing protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283337; PFAM: SirA-like protein YP_004624905.1 InterPro IPR002119; KEGG: sfu:Sfum_3168 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283338; PFAM: YeeE/YedE family (DUF395) YP_004624906.1 COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: sfu:Sfum_3313 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: Transcriptional regulator, LysR family; IMG reference gene:2505283339; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain YP_004624907.1 COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: ddf:DEFDS_1242 hypothetical protein; PFAM: protein of unknown function DUF820; SPTR: Putative uncharacterized protein; IMG reference gene:2505283340; PFAM: Protein of unknown function (DUF820) YP_004624908.1 COGs: COG1522 Transcriptional regulators; InterPro IPR019888; KEGG: dol:Dole_2996 AsnC family transcriptional regulator; SMART: Transcription regulator AsnC-type; SPTR: Putative transcriptional regulator, AsnC family; IMG reference gene:2505283341 YP_004624909.1 COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; InterPro IPR005814:IPR004639; KEGG: mta:Moth_1244 glutamate-1-semialdehyde 2,1-aminomutase; PFAM: aminotransferase class-III; SPTR: Glutamate-1-semialdehyde 2,1-aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; IMG reference gene:2505283342; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase YP_004624910.1 KEGG: avn:Avin_40270 YfgM-like protein; SPTR: Initiator RepB protein; IMG reference gene:2505283343 YP_004624911.1 COGs: COG1533 DNA repair photolyase; InterPro IPR007197:IPR006638; KEGG: aac:Aaci_2479 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; IMG reference gene:2505283344; PFAM: Radical SAM superfamily YP_004624912.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: tye:THEYE_A0940 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Membrane protein, putative; IMG reference gene:2505283345; PFAM: Sulfite exporter TauE/SafE YP_004624913.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: sfu:Sfum_3301 pyruvate carboxyltransferase; PFAM: pyruvate carboxyltransferase; SPTR: Pyruvate carboxyltransferase; IMG reference gene:2505283346; PFAM: HMGL-like YP_004624914.1 COGs: COG1785 Alkaline phosphatase; InterPro IPR001952; KEGG: pca:Pcar_0512 alkaline phosphatase; PFAM: Alkaline phosphatase; PRIAM: Alkaline phosphatase; SMART: Alkaline phosphatase; SPTR: Alkaline phosphatase; IMG reference gene:2505283347; PFAM: Alkaline phosphatase YP_004624915.1 InterPro IPR011449:IPR013424; KEGG: cps:CPS_0379 hypothetical protein; PFAM: protein of unknown function DUF1555; SPTR: Putative uncharacterized protein; IMG reference gene:2505283348; TIGRFAM: PEP-CTERM putative exosortase interaction domain YP_004624916.1 InterPro IPR018961; KEGG: drt:Dret_1391 DnaJ-like, subfamily C, member 28; PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; SPTR: DnaJ-like, subfamily C, member 28; IMG reference gene:2505283349; PFAM: Domain of unknown function (DUF1992) YP_004624917.1 COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372:IPR005790; KEGG: gem:GM21_0770 DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; SPTR: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; IMG reference gene:2505283350; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit YP_004624918.1 InterPro IPR003115; KEGG: dol:Dole_2368 nuclease; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: ParB domain protein nuclease; IMG reference gene:2505283351; PFAM: ParB-like nuclease domain YP_004624919.1 COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR001636:IPR018236; KEGG: dol:Dole_2369 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; IMG reference gene:2505283352; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004624920.1 KEGG: dal:Dalk_0401 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283353; PFAM: Rho termination factor, N-terminal domain YP_004624921.1 KEGG: afm:AFUA_7G05520 hypothetical protein; SPTR: Two component transcriptional regulator, AraC family; IMG reference gene:2505283354 YP_004624922.1 COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: sfu:Sfum_3054 MgtC/SapB transporter; PFAM: MgtC/SapB transporter; SPTR: MgtC/SapB transporter; IMG reference gene:2505283355; PFAM: MgtC family YP_004624923.1 COGs: COG1109 Phosphomannomutase; InterProIPR005841:IPR005844:IPR005845:IPR005846:IPR 005843:IPR006352:IPR016066; KEGG: gem:GM21_1599 phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: Phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; IMG reference gene:2505283356; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase YP_004624924.1 COGs: COG4856 conserved hypothetical protein; InterPro IPR012505; KEGG: ddf:DEFDS_1032 hypothetical protein; PFAM: YbbR family protein; SPTR: YbbR-like; IMG reference gene:2505283357; PFAM: YbbR-like protein YP_004624925.1 COGs: COG1624 conserved hypothetical protein; InterPro IPR003390:IPR014046:IPR020053; KEGG: dak:DaAHT2_0445 protein of unknown function DUF147; PFAM: protein of unknown function DUF147; SPTR: Putative uncharacterized protein; IMG reference gene:2505283358; PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: TIGR00159 family protein YP_004624926.1 COGs: COG0294 Dihydropteroate synthase; InterPro IPR000489:IPR006390; KEGG: tnp:Tnap_0671 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; IMG reference gene:2505283359; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase YP_004624927.1 COGs: COG0465 ATP-dependent Zn protease; InterProIPR003959:IPR000642:IPR005936:IPR003593:IPR 003960; KEGG: ddf:DEFDS_1029 cell division protein FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; PRIAM: Microtubule-severing ATPase; SMART: AAA ATPase; SPTR: Cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; IMG reference gene:2505283360; PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_004624928.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dat:HRM2_25100 response regulator family protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Hypothetical histidine kinase protein; IMG reference gene:2505283361; PFAM: Response regulator receiver domain YP_004624929.1 InterPro IPR019887; KEGG: sma:SAV_2677 hypothetical protein; PFAM: Transcription regulator AsnC-type-like; SPTR: Putative AsnC-family transcriptional regulator; IMG reference gene:2505283362; PFAM: AsnC family YP_004624930.1 IMG reference gene:2505283363 YP_004624931.1 COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase and inactivated derivative; IMG reference gene:2505283364; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004624932.1 COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: dal:Dalk_0350 three-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; SPTR: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; IMG reference gene:2505283365; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YP_004624933.1 COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537:IPR004441; KEGG: sth:STH3115 rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; IMG reference gene:2505283366; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3 YP_004624934.1 COGs: COG0194 Guanylate kinase; InterPro IPR008144:IPR017665:IPR008145:IPR020590; KEGG: dak:DaAHT2_0280 guanylate kinase; PFAM: guanylate kinase; PRIAM: Guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; SPTR: Guanylate kinase; TIGRFAM: guanylate kinase; IMG reference gene:2505283367; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase YP_004624935.1 COGs: COG2052 conserved hypothetical protein; InterPro IPR007169; KEGG: drt:Dret_0295 hypothetical protein; PFAM: protein of unknown function DUF370; SPTR: Putative uncharacterized protein; IMG reference gene:2505283368; PFAM: Domain of unknown function (DUF370) YP_004624936.1 COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR013527:IPR013551:IPR005229; KEGG: dps:DP2862 hypothetical protein; PFAM: YicC-like domain-containing protein; domain of unknown function DUF1732; SPTR: Putative uncharacterized protein; IMG reference gene:2505283369; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein YP_004624937.1 KEGG: sfu:Sfum_1128 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283370 YP_004624938.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006664:IPR006665:IPR014169; KEGG: gme:Gmet_3541 OmpA/MotB; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB; TIGRFAM: peptidoglycan-associated lipoprotein; IMG reference gene:2505283371; PFAM: OmpA family; TIGRFAM: peptidoglycan-associated lipoprotein YP_004624939.1 InterPro IPR000293:IPR005632; KEGG: tye:THEYE_A0093 outer membrane protein, putative; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein, putative; IMG reference gene:2505283372; PFAM: Outer membrane protein (OmpH-like) YP_004624940.1 COGs: COG0837 Glucokinase; InterPro IPR003836; KEGG: dps:DP1060 glucokinase; PFAM: Glucokinase; PRIAM: Glucokinase; SPTR: Glucokinase; TIGRFAM: glucokinase; IMG reference gene:2505283373; PFAM: Glucokinase; TIGRFAM: glucokinase, proteobacterial type YP_004624941.1 KEGG: vsa:VSAL_II0726 membrane protein; SPTR: Membrane protein; manually curated; IMG reference gene:2505283374 YP_004624942.1 COGs: COG0728 membrane protein putative virulence factor; InterPro IPR004268; KEGG: dps:DP2399 virulence factor (MviN); PFAM: virulence factor MVIN family protein; SPTR: Related to virulence factor (MviN); TIGRFAM: integral membrane protein MviN; IMG reference gene:2505283375; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN YP_004624943.1 COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: dal:Dalk_5038 indolepyruvate ferredoxin oxidoreductase; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; PRIAM: Indolepyruvate ferredoxin oxidoreductase; SPTR: Indolepyruvate ferredoxin oxidoreductase; IMG reference gene:2505283376; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, beta subunit YP_004624944.1 COGs: COG4231 Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits; InterPro IPR002880:IPR011766:IPR017721; KEGG: dat:HRM2_11230 IorA1; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PRIAM: Indolepyruvate ferredoxin oxidoreductase; SPTR: IorA1; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; IMG reference gene:2505283377; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit YP_004624945.1 KEGG: sfr:Sfri_1790 Fmu (Sun) domain-containing protein; SPTR: Fmu (Sun) domain protein; IMG reference gene:2505283378 YP_004624946.1 KEGG: dak:DaAHT2_2010 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283379 YP_004624947.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: sat:SYN_02524 ferric uptake regulator family protein; PFAM: ferric-uptake regulator; SPTR: Ferric uptake regulator family protein; IMG reference gene:2505283380; PFAM: Ferric uptake regulator family YP_004624948.1 InterPro IPR003346; KEGG: dat:HRM2_46600 transposase for insertion sequences IS116, IS110 and IS902 (IS111A/IS1328/IS1533 family protein); PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase (IS111A/IS1328/IS1533 family protein); IMG reference gene:2505283381; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004624949.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterProIPR008611:IPR004090:IPR003660:IPR004089:IPR 000727; KEGG: nca:Noca_3602 chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Chemotaxis sensory transducer; IMG reference gene:2505283382; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004624950.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863:IPR001431; KEGG: sfu:Sfum_1235 processing peptidase; PFAM: peptidase M16 domain protein; SPTR: Processing peptidase; IMG reference gene:2505283383; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_004624951.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR019591:IPR000808; KEGG: dak:DaAHT2_0322 ATPase-like, ParA/MinD; PFAM: ATPase-like, ParA/MinD; SPTR: ATPase-like, ParA/MinD; IMG reference gene:2505283384; PFAM: ParA/MinD ATPase like YP_004624952.1 COGs: COG1416 conserved hypothetical protein; KEGG: dsa:Desal_3394 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283385; PFAM: DsrE/DsrF-like family YP_004624953.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017:IPR017896:IPR017900; KEGG: drt:Dret_1037 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283386; PFAM: Cysteine-rich domain YP_004624954.1 COGs: COG1896 hydrolase of HD superfamily; InterPro IPR006674:IPR003607; KEGG: sfu:Sfum_3021 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase; IMG reference gene:2505283387; PFAM: HD domain YP_004624955.1 COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: mrb:Mrub_0165 ADP-ribosylation/crystallin J1; PFAM: ADP-ribosylation/Crystallin J1; SPTR: ADP-ribosylation/Crystallin J1; IMG reference gene:2505283388; PFAM: ADP-ribosylglycohydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase YP_004624956.1 InterPro IPR006935:IPR001650:IPR014021:IPR014001; KEGG: tgr:Tgr7_3181 helicase domain protein; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; SPTR: Helicase domain protein; IMG reference gene:2505283389; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_004624957.1 COGs: COG4106 Trans-aconitate methyltransferase; InterPro IPR013216; KEGG: mac:MA1801 hypothetical protein; PFAM: Methyltransferase type 11; PRIAM: Trans-aconitate 2-methyltransferase; SPTR: Putative uncharacterized protein; IMG reference gene:2505283390; PFAM: Methyltransferase domain YP_004624958.1 KEGG: mpt:Mpe_A1163 putative iron sulfur binding protein; SPTR: Putative iron sulfur binding protein; IMG reference gene:2505283391 YP_004624959.1 KEGG: ptm:GSPATT00029150001 hypothetical protein; SPTR: Chromosome undetermined scaffold_109, whole genome shotgun sequence; IMG reference gene:2505283392 YP_004624960.1 KEGG: mpt:Mpe_A1163 putative iron sulfur binding protein; SPTR: Protease Do; IMG reference gene:2505283393 YP_004624961.1 KEGG: ptm:GSPATT00029150001 hypothetical protein; SPTR: Chromosome undetermined scaffold_109, whole genome shotgun sequence; IMG reference gene:2505283394 YP_004624962.1 KEGG: azl:AZL_d04230 hypothetical protein; SPTR: Elongation factor Ts; IMG reference gene:2505283395 YP_004624963.1 COGs: COG0082 Chorismate synthase; InterPro IPR000453:IPR020541; KEGG: dak:DaAHT2_2093 chorismate synthase; PFAM: chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: chorismate synthase; IMG reference gene:2505283396; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase YP_004624964.1 InterPro IPR005503; KEGG: tet:TTHERM_00006050 hypothetical protein; PFAM: flagellar basal body-associated protein FliL; SPTR: Putative uncharacterized protein; IMG reference gene:2505283397; PFAM: Flagellar basal body-associated protein FliL YP_004624965.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR001808:IPR000595:IPR012318; KEGG: dal:Dalk_2705 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: Transcriptional regulator, Crp/Fnr family; IMG reference gene:2505283398; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_004624966.1 COGs: COG1214 Inactive homolog of metal-dependent protease putative molecular chaperone; InterPro IPR000905; KEGG: dak:DaAHT2_0975 peptidase M22 glycoprotease; PFAM: peptidase M22 glycoprotease; SPTR: Peptidase M22 glycoprotease; IMG reference gene:2505283399; PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ YP_004624967.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: gme:Gmet_1235 binding-protein dependent transport system inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; IMG reference gene:2505283400; PFAM: Binding-protein-dependent transport system inner membrane component YP_004624968.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: sat:SYN_01342 oligopeptide transport system permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Oligopeptide transport system permease protein; IMG reference gene:2505283401; PFAM: Binding-protein-dependent transport system inner membrane component YP_004624969.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: tna:CTN_0305 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: Putative HspC2 heat shock protein; IMG reference gene:2505283402; PFAM: Hsp20/alpha crystallin family YP_004624970.1 COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR005117:IPR006067; KEGG: rci:RCIX2197 sulfite reductase, assimilatory; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; SPTR: Sulfite reductase assimilatory-type; IMG reference gene:2505283404; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain YP_004624971.1 InterPro IPR001623; KEGG: sfu:Sfum_2665 heat shock protein DnaJ domain-containing protein; PFAM: heat shock protein DnaJ domain protein; SPTR: Heat shock protein DnaJ domain protein; IMG reference gene:2505283405; PFAM: DnaJ domain YP_004624972.1 KEGG: pmo:Pmob_0978 anaerobic ribonucleoside triphosphate reductase; SPTR: Anaerobic ribonucleoside-triphosphate reductase, putative; IMG reference gene:2505283406 YP_004624973.1 COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR005144:IPR012833; KEGG: ate:Athe_0548 anaerobic ribonucleoside triphosphate reductase; PFAM: ATP-cone domain protein; SPTR: Anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; IMG reference gene:2505283407; PFAM: ATP cone domain; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase YP_004624974.1 COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006129:IPR006128:IPR006127; KEGG: gme:Gmet_0491 periplasmic solute binding protein; PFAM: periplasmic solute binding protein; SPTR: Periplasmic solute binding protein; IMG reference gene:2505283408; PFAM: Periplasmic solute binding protein family YP_004624975.1 COGs: COG1213 sugar nucleotidyltransferase; InterPro IPR005835:IPR000462; KEGG: aae:aq_1367 glucose-1-phosphate thymidylyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Nucleotidyl transferase; SPTR: Glucose-1-phosphate thymidylyltransferase; IMG reference gene:2505283409; PFAM: Nucleotidyl transferase; CDP-alcohol phosphatidyltransferase YP_004624976.1 COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651:IPR011761; KEGG: dak:DaAHT2_2245 RimK domain protein ATP-grasp; PFAM: RimK domain protein ATP-grasp; SPTR: RimK domain protein ATP-grasp; IMG reference gene:2505283410; PFAM: RimK-like ATP-grasp domain YP_004624977.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR004358:IPR003594:IPR005467; KEGG: dak:DaAHT2_2152 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Sensory box histidine kinase/response regulator; IMG reference gene:2505283411; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004624978.1 COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR014043:IPR004410; KEGG: dak:DaAHT2_1176 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; SPTR: Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; IMG reference gene:2505283412; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_004624979.1 COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); InterPro IPR002930:IPR017453; KEGG: htu:Htur_2055 glycine cleavage system H protein; PFAM: glycine cleavage H-protein; SPTR: Glycine cleavage system H protein; TIGRFAM: glycine cleavage system H protein; IMG reference gene:2505283413; PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein YP_004624980.1 COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterProIPR007197:IPR010505:IPR013483:IPR006638:IPR 000385; KEGG: dae:Dtox_2958 molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; IMG reference gene:2505283414; PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial YP_004624981.1 KEGG: dal:Dalk_0365 GTP-binding protein; SPTR: GTP-binding protein; IMG reference gene:2505283415 YP_004624982.1 COGs: COG2835 conserved hypothetical protein; InterPro IPR005651; KEGG: sfu:Sfum_3635 hypothetical protein; PFAM: protein of unknown function DUF343; SPTR: Putative uncharacterized protein; IMG reference gene:2505283416; PFAM: Trm112p-like protein YP_004624983.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dae:Dtox_0522 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein; IMG reference gene:2505283417; PFAM: AcrB/AcrD/AcrF family YP_004624984.1 InterPro IPR010462:IPR013096; KEGG: dal:Dalk_1201 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2 conserved barrel domain protein; IMG reference gene:2505283418; PFAM: Cupin domain YP_004624985.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sul:SYO3AOP1_1133 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; IMG reference gene:2505283419; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004624986.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: gme:Gmet_3465 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; IMG reference gene:2505283420; PFAM: Outer membrane efflux protein YP_004624987.1 InterPro IPR001647:IPR015292; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator; PFAM: regulatory protein TetR; Transcriptional regulator TetR; SPTR: Transcriptional regulator, TetR family; IMG reference gene:2505283421; PFAM: Domain of unknown function (DUF1956); Bacterial regulatory proteins, tetR family YP_004624988.1 InterPro IPR001440:IPR019734:IPR013026; KEGG: pmx:PERMA_0887 tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat domain protein; IMG reference gene:2505283422; PFAM: Tetratricopeptide repeat YP_004624989.1 KEGG: pmx:PERMA_0886 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283423 YP_004624990.1 COGs: COG4413 Urea transporter; InterPro IPR016047; KEGG: pmx:PERMA_0885 putative UreA transporter; PFAM: Peptidase M23; SPTR: Putative urea transporter; IMG reference gene:2505283424; PFAM: Urea transporter; Peptidase family M23 YP_004624991.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: pmx:PERMA_0884 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Diaminopimelate decarboxylase; IMG reference gene:2505283425; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain YP_004624992.1 COGs: COG3919 ATP-grasp protein; InterPro IPR011761; KEGG: pmx:PERMA_0883 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283426 YP_004624993.1 KEGG: pmx:PERMA_0882 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283427; PFAM: Coenzyme PQQ synthesis protein D (PqqD) YP_004624994.1 COGs: COG0539 Ribosomal protein S1; InterPro IPR000110:IPR003029:IPR018032; KEGG: sfu:Sfum_2118 ribosomal protein S1; PFAM: RNA binding S1 domain protein; SPTR: SSU ribosomal protein S1P; TIGRFAM: ribosomal protein S1; IMG reference gene:2505283428; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_004624995.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002142:IPR004635; KEGG: tye:THEYE_A1771 signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; SPTR: Signal peptide peptidase SppA, 36K type; TIGRFAM: signal peptide peptidase SppA, 36K type; IMG reference gene:2505283429; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type YP_004624996.1 COGs: COG0248 Exopolyphosphatase; InterPro IPR000119:IPR003695; KEGG: tye:THEYE_A1046 bifunctional 3-dehydroquinate synthase/phosphatase; PFAM: Ppx/GppA phosphatase; histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: Bifunctional 3-dehydroquinate synthase/phosphatase; IMG reference gene:2505283430; PFAM: Bacterial DNA-binding protein; Ppx/GppA phosphatase family YP_004624997.1 COGs: COG0516 IMP dehydrogenase/GMP reductase; InterProIPR001093:IPR000644:IPR005990:IPR018529:IPR 015875; KEGG: dak:DaAHT2_1543 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; PRIAM: IMP dehydrogenase; SMART: CBS domain containing protein; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; IMG reference gene:2505283431; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase YP_004624998.1 COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR003004:IPR018076; KEGG: pca:Pcar_2147 putative general protein secretion protein; PFAM: Type II secretion system F domain; SPTR: Putative general protein secretion protein; IMG reference gene:2505283432; PFAM: Bacterial type II secretion system protein F domain YP_004624999.1 COGs: COG2454 conserved hypothetical protein; InterPro IPR007368; KEGG: mfe:Mefer_0862 protein of unknown function DUF434; PFAM: protein of unknown function DUF434; SPTR: Putative uncharacterized protein; IMG reference gene:2505283433; PFAM: Protein of unknown function (DUF434) YP_004625000.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR003095:IPR001623:IPR002939:IPR018253; KEGG: dak:DaAHT2_1329 chaperone DnaJ domain protein; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Chaperone DnaJ domain protein; IMG reference gene:2505283434; PFAM: DnaJ C terminal region; DnaJ domain YP_004625001.1 COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: dal:Dalk_0350 three-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; SPTR: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; IMG reference gene:2505283435; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YP_004625002.1 COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873:IPR011904:IPR020845; KEGG: cts:Ctha_2157 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: AMP-dependent synthetase and ligase; TIGRFAM: acetate/CoA ligase; IMG reference gene:2505283436; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase YP_004625003.1 COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: wsu:WS0712 coenzyme F390 synthetase II; PFAM: AMP-dependent synthetase and ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: COENZYME F390 SYNTHETASE II; IMG reference gene:2505283437; PFAM: AMP-binding enzyme YP_004625004.1 COGs: COG4747 ACT domain-containing protein; InterPro IPR002912; KEGG: slp:Slip_0779 amino acid-binding ACT domain protein; PFAM: amino acid-binding ACT domain protein; SPTR: Amino acid-binding ACT domain protein; IMG reference gene:2505283438; PFAM: ACT domain YP_004625005.1 COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); InterProIPR013839:IPR004150:IPR004149:IPR000445:IPR 001357:IPR001679:IPR013840:IPR003583:IPR018239; KEGG: sfu:Sfum_1428 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif; BRCT domain protein; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; SPTR: DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; IMG reference gene:2505283439; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; NAD-dependent DNA ligase C4 zinc finger domain; Helix-hairpin-helix motif; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent YP_004625006.1 COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: dat:HRM2_33010 putative aminodeoxychorismate lyase; PFAM: aminodeoxychorismate lyase; SPTR: Aminodeoxychorismate lyase; IMG reference gene:2505283440; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family YP_004625007.1 COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR019734:IPR013026; KEGG: dak:DaAHT2_1672 TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat:Tetratricopeptide TPR_4; IMG reference gene:2505283441; PFAM: Tetratricopeptide repeat YP_004625008.1 KEGG: dak:DaAHT2_1673 heat repeat-containing PBS lyase; SPTR: Heat repeat-containing PBS lyase; IMG reference gene:2505283442 YP_004625009.1 InterPro IPR001440:IPR013026:IPR019734; KEGG: nve:NEMVE_v1g201578 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Predicted protein; IMG reference gene:2505283443 YP_004625010.1 KEGG: dds:Ddes_0888 protein of unknown function UPF0153; SPTR: Putative uncharacterized protein; IMG reference gene:2505283444; PFAM: Uncharacterised protein family (UPF0153) YP_004625011.1 InterPro IPR013429; KEGG: dal:Dalk_1639 regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; SPTR: Regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; IMG reference gene:2505283445; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family YP_004625012.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505283446 YP_004625013.1 KEGG: pca:Pcar_3121 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283447 YP_004625014.1 InterPro IPR000551; KEGG: ttr:Tter_2295 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Transcriptional regulator, MerR family; IMG reference gene:2505283448; PFAM: MerR family regulatory protein YP_004625015.1 COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR004477:IPR004797; KEGG: nwa:Nwat_0444 DNA internalization-like competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; SPTR: DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; IMG reference gene:2505283449; PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 YP_004625016.1 COGs: COG1371 conserved hypothetical protein; InterPro IPR002804; KEGG: drt:Dret_0332 protein of unknown function DUF101; PFAM: protein of unknown function DUF101; SPTR: Putative uncharacterized protein; IMG reference gene:2505283450; PFAM: Archease protein family (DUF101/UPF0211) YP_004625017.1 COGs: COG3894 Uncharacterized metal-binding protein; KEGG: dol:Dole_1485 iron-sulfur cluster binding protein; SPTR: Iron-sulfur cluster binding protein; IMG reference gene:2505283451 YP_004625018.1 COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335:IPR005791:IPR005665; KEGG: dak:DaAHT2_0637 protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Protein-export membrane protein SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; IMG reference gene:2505283452; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF YP_004625019.1 COGs: COG1067 ATP-dependent protease; InterPro IPR001984; KEGG: sfu:Sfum_0020 ATP-dependent protease, putative; SPTR: ATP-dependent protease, putative; IMG reference gene:2505283453; PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease YP_004625020.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505283454 YP_004625021.1 COGs: COG1522 Transcriptional regulators; InterPro IPR019888; KEGG: dba:Dbac_2394 putative transcriptional regulator, AsnC family; SMART: Transcription regulator AsnC-type; SPTR: Putative transcriptional regulator, AsnC family; IMG reference gene:2505283455 YP_004625022.1 COGs: COG0782 Transcription elongation factor; InterPro IPR001437:IPR006359:IPR018151; KEGG: hne:HNE_0643 transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein; SPTR: Transcription elongation factor greA; TIGRFAM: transcription elongation factor GreA; IMG reference gene:2505283456; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA YP_004625023.1 COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537:IPR006371; KEGG: drm:Dred_2196 4-hydroxybenzoate polyprenyltransferase, putative; PFAM: UbiA prenyltransferase; SPTR: 4-hydroxybenzoate polyprenyltransferase related; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; IMG reference gene:2505283457; PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase YP_004625024.1 COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; InterPro IPR003382:IPR004507; KEGG: dak:DaAHT2_0571 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; SPTR: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; IMG reference gene:2505283458; PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases YP_004625025.1 COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR002915:IPR002156:IPR011343; KEGG: nhl:Nhal_3457 ribonuclease H; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; ribonuclease H; PRIAM: Deoxyribose-phosphate aldolase., Ribonuclease H; SPTR: Ribonuclease H; TIGRFAM: deoxyribose-phosphate aldolase; manually curated; IMG reference gene:2505283459; PFAM: RNase H; DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase YP_004625026.1 COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); InterPro IPR006367; KEGG: tjr:TherJR_1133 siroheme synthase; SPTR: Siroheme synthase; TIGRFAM: siroheme synthase; IMG reference gene:2505283460; TIGRFAM: siroheme synthase, N-terminal domain YP_004625027.1 COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: cjr:CJE0923 methylated-DNA--protein-cysteine S-methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: Methylated-DNA--protein-cysteine S-methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; IMG reference gene:2505283461; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_004625028.1 COGs: COG1580 Flagellar basal body-associated protein; InterPro IPR005503; KEGG: ddf:DEFDS_1717 flagellar FliL protein; PFAM: flagellar basal body-associated protein FliL; SPTR: Flagellar FliL protein; IMG reference gene:2505283462; PFAM: Flagellar basal body-associated protein FliL YP_004625029.1 COGs: COG1868 Flagellar motor switch protein; InterPro IPR001689:IPR001543; KEGG: sat:SYN_02837 flagellar motor switch protein; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; SPTR: Flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliM; IMG reference gene:2505283463; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM YP_004625030.1 COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR001172:IPR001543:IPR012826; KEGG: dds:Ddes_0375 flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; SPTR: Flagellar motor switch protein FliN; TIGRFAM: flagellar motor switch protein FliN; IMG reference gene:2505283464; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN YP_004625031.1 KEGG: dak:DaAHT2_1717 flagellar biosynthetic protein FliO; SPTR: Flagellar biosynthetic protein FliO; IMG reference gene:2505283465; PFAM: Flagellar biosynthesis protein, FliO YP_004625032.1 COGs: COG1338 Flagellar biosynthesis pathway component FliP; InterPro IPR005838:IPR005837; KEGG: dal:Dalk_1007 flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; SPTR: Flagellar transport protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; manually curated; IMG reference gene:2505283466; PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP YP_004625033.1 COGs: COG1987 Flagellar biosynthesis pathway component FliQ; InterPro IPR002191:IPR006305; KEGG: dba:Dbac_2730 flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; SPTR: Flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; IMG reference gene:2505283467; PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ YP_004625034.1 COGs: COG1684 Flagellar biosynthesis pathway component FliR; InterPro IPR002010:IPR006303; KEGG: dal:Dalk_1005 flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; SPTR: Flagellar biosynthetic protein fliR; TIGRFAM: flagellar biosynthetic protein FliR; IMG reference gene:2505283468; PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR YP_004625035.1 COGs: COG1377 Flagellar biosynthesis pathway component FlhB; InterPro IPR006135:IPR006136; KEGG: sat:SYN_02832 flagellar biosynthesis pathway component; PFAM: type III secretion exporter; SPTR: Flagellar biosynthesis pathway component; TIGRFAM: flagellar biosynthetic protein FlhB; IMG reference gene:2505283469; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flagellar biosynthetic protein FlhB YP_004625036.1 COGs: COG1298 Flagellar biosynthesis pathway component FlhA; InterPro IPR001712:IPR006301; KEGG: dak:DaAHT2_1722 flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; SPTR: Flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; IMG reference gene:2505283470; PFAM: FHIPEP family; TIGRFAM: flagellar biosynthesis protein FlhA YP_004625037.1 COGs: COG1419 Flagellar GTP-binding protein; InterPro IPR000897:IPR003593; KEGG: dat:HRM2_37110 FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; SPTR: FlhF; IMG reference gene:2505283471; PFAM: SRP54-type protein, GTPase domain YP_004625038.1 COGs: COG0455 ATPase involved in chromosome partitioning; KEGG: dak:DaAHT2_1724 cobyrinic acid ac-diamide synthase; SPTR: Cobyrinic acid a,c-diamide synthase; IMG reference gene:2505283472; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004625039.1 COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterProIPR000943:IPR007627:IPR007624:IPR007630:IPR 014284:IPR012845; KEGG: dak:DaAHT2_1725 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; IMG reference gene:2505283473; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family YP_004625040.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dsa:Desal_2598 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; IMG reference gene:2505283474; PFAM: Response regulator receiver domain YP_004625041.1 InterPro IPR005503; KEGG: mmu:100043717 predicted gene 4603; PFAM: flagellar basal body-associated protein FliL; SPTR: Glutamic acid-rich protein (Garp); IMG reference gene:2505283475; PFAM: Flagellar basal body-associated protein FliL YP_004625042.1 KEGG: bcy:Bcer98_0702 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283476 YP_004625043.1 KEGG: ddf:DEFDS_0434 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283477 YP_004625044.1 KEGG: mpe:MYPE1090 transcription elongation factor NusA; SPTR: N-utilization substance protein A; IMG reference gene:2505283478 YP_004625045.1 InterPro IPR007842; KEGG: ttj:TTHA0633 hypothetical protein; PFAM: HEPN domain protein; SPTR: Hypothetical conserved protein; IMG reference gene:2505283479; PFAM: HEPN domain YP_004625046.1 COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: dma:DMR_16370 putative Rrf2 family DNA binding protein; PFAM: protein of unknown function UPF0074; SPTR: Putative Rrf2 family DNA binding protein; TIGRFAM: transcriptional regulator, Rrf2 family; IMG reference gene:2505283480; PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein YP_004625047.1 COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR004358:IPR003594:IPR005467; KEGG: dma:DMR_12550 putative sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Histidine kinase; IMG reference gene:2505283481; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004625048.1 COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: pmy:Pmen_0955 peptidylprolyl isomerase, FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2505283482; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_004625049.1 COGs: COG3635 phosphoglycerate mutase AP superfamily; InterPro IPR019304:IPR006124:IPR013371:IPR004456; KEGG: tye:THEYE_A1682 proposed homoserine kinase; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein; PRIAM: Phosphoglycerate mutase; SPTR: Proposed homoserine kinase; TIGRFAM: proposed homoserine kinase; phosphonopyruvate decarboxylase-related protein; IMG reference gene:2505283483; PFAM: Metalloenzyme superfamily; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form; proposed homoserine kinase YP_004625050.1 COGs: COG0029 Aspartate oxidase; InterPro IPR013027:IPR003953:IPR004112:IPR005288; KEGG: dak:DaAHT2_2040 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; IMG reference gene:2505283484; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase YP_004625051.1 COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047; KEGG: slp:Slip_2119 ammonium transporter; PFAM: ammonium transporter; SPTR: Ammonium transporter; TIGRFAM: ammonium transporter; IMG reference gene:2505283485; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter YP_004625052.1 COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR017918; KEGG: dth:DICTH_0174 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: Nitrogen regulatory protein P-II; IMG reference gene:2505283486; PFAM: Nitrogen regulatory protein P-II YP_004625053.1 InterPro IPR012902; KEGG: drt:Dret_2133 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283487; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004625054.1 COGs: COG4968 Tfp pilus assembly protein PilE; InterPro IPR012902:IPR001120; KEGG: drt:Dret_2133 hypothetical protein; SPTR: General secretion pathway protein H; IMG reference gene:2505283488; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004625055.1 COGs: COG2262 GTPase; InterProIPR006073:IPR002917:IPR016496:IPR005225:IPR 004827; KEGG: sat:SYN_01762 GTPase; PFAM: GTP-binding protein HSR1-related; SPTR: GTPase; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; IMG reference gene:2505283489; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain YP_004625056.1 COGs: COG0130 Pseudouridine synthase; InterPro IPR002501:IPR014780; KEGG: dal:Dalk_4741 tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; SPTR: tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; IMG reference gene:2505283490; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase YP_004625057.1 COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: dak:DaAHT2_1878 phosphoesterase RecJ domain protein; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Phosphoesterase RecJ domain protein; IMG reference gene:2505283491; PFAM: DHH family; DHHA1 domain YP_004625058.1 COGs: COG0858 Ribosome-binding factor A; InterPro IPR000238; KEGG: tjr:TherJR_1378 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; IMG reference gene:2505283492; PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A YP_004625059.1 COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: tjr:TherJR_2356 protein of unknown function DUF503; PFAM: protein of unknown function DUF503; SPTR: Hypothetical cytosolic protein; IMG reference gene:2505283493; PFAM: Protein of unknown function (DUF503) YP_004625060.1 COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR006847:IPR000795:IPR004161:IPR000178:IPR 005225; KEGG: gme:Gmet_1586 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein; SPTR: Translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; IMG reference gene:2505283494; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2 YP_004625061.1 COGs: COG2740 nucleic-acid-binding protein implicated in transcription termination; InterPro IPR007393; KEGG: cag:Cagg_3682 protein of unknown function DUF448; PFAM: protein of unknown function DUF448; SPTR: Putative uncharacterized protein; IMG reference gene:2505283495; PFAM: Protein of unknown function (DUF448) YP_004625062.1 COGs: COG0195 Transcription elongation factor; InterProIPR013735:IPR003029:IPR018111:IPR004088:IPR 010213:IPR004087; KEGG: dak:DaAHT2_1881 transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein; K Homology, type 1, subgroup; SPTR: Transcription termination factor NusA; TIGRFAM: transcription termination factor NusA; IMG reference gene:2505283496; PFAM: NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA YP_004625063.1 InterPro IPR003728:IPR020790; KEGG: sfu:Sfum_1226 hypothetical protein; PFAM: protein of unknown function DUF150; SPTR: Ribosome maturation factor rimP; IMG reference gene:2505283497; PFAM: Uncharacterised BCR, YhbC family COG0779 YP_004625064.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505283499 YP_004625065.1 COGs: COG1583 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR002743:IPR010156; KEGG: rxy:Rxyl_0271 CRISPR-associated Cas6 family protein; PFAM: protein of unknown function DUF57; SPTR: CRISPR-associated protein, Cas6 family; TIGRFAM: CRISPR-associated protein Cas6; IMG reference gene:2505283500; PFAM: CRISPR associated protein Cas6; TIGRFAM: CRISPR-associated endoribonuclease Cas6 YP_004625066.1 InterPro IPR007522; KEGG: pth:PTH_0707 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; IMG reference gene:2505283501; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr1 YP_004625067.1 InterPro IPR005537; KEGG: adg:Adeg_0804 protein of unknown function DUF324; PFAM: protein of unknown function DUF324; SPTR: Putative uncharacterized protein; IMG reference gene:2505283502; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr6 YP_004625068.1 KEGG: pth:PTH_1920 hypothetical protein; SPTR: Uncharacterized conserved protein; IMG reference gene:2505283503 YP_004625069.1 InterPro IPR014942; KEGG: pth:PTH_1920 hypothetical protein; PFAM: Domain of unknown function DUF1814; SPTR: Uncharacterized conserved protein; IMG reference gene:2505283504; PFAM: Domain of unknown function (DUF1814) YP_004625070.1 KEGG: rrs:RoseRS_2590 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283505 YP_004625071.1 COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR013410; KEGG: pth:PTH_0712 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Uncharacterized protein; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; IMG reference gene:2505283506; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr4 YP_004625072.1 KEGG: cli:Clim_0934 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283507 YP_004625073.1 InterPro IPR005537; KEGG: kol:Kole_0662 protein of unknown function DUF324; PFAM: protein of unknown function DUF324; SPTR: Putative uncharacterized protein; IMG reference gene:2505283508; PFAM: RAMP superfamily YP_004625074.1 COGs: COG4871 conserved hypothetical protein; InterPro IPR007202; KEGG: afu:AF2246 hypothetical protein; PFAM: Fe-S cluster domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283509; PFAM: Putative Fe-S cluster YP_004625075.1 KEGG: dau:Daud_1816 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283510 YP_004625076.1 COGs: COG1857 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR010154:IPR013414; KEGG: tte:TTE2662 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated regulatory protein, DevR family; CRISPR-associated autoregulator DevR family; IMG reference gene:2505283511; TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP YP_004625077.1 InterPro IPR013422; KEGG: tte:TTE2661 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas5; IMG reference gene:2505283512; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, N-terminal domain YP_004625078.1 COGs: COG1203 helicase; InterProIPR006674:IPR011545:IPR001650:IPR014021:IPR 006483:IPR006474:IPR003607:IPR014001; KEGG: dau:Daud_1813 metal dependent phosphohydrolase; PFAM: DEAD/DEAH box helicase domain protein; metal-dependent phosphohydrolase HD sub domain; helicase domain protein; SMART: DEAD-like helicase ; metal-dependent phosphohydrolase HD region; helicase domain protein; SPTR: Metal dependent phosphohydrolase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; IMG reference gene:2505283513; PFAM: HD domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD YP_004625079.1 InterPro IPR007159:IPR006339; KEGG: pho:PHS014.3n hypothetical protein; PFAM: SpoVT/AbrB domain-containing protein; SPTR: Transcriptional regulator AbrB; TIGRFAM: transcriptional regulator, AbrB family; IMG reference gene:2505283514; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family YP_004625080.1 COGs: COG1468 RecB family exonuclease; InterPro IPR013343; KEGG: hth:HTH_1246 CRISPR-associated exonuclease; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas4; IMG reference gene:2505283515; PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4 YP_004625081.1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729:IPR019858; KEGG: ddf:DEFDS_0556 CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; SPTR: CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; IMG reference gene:2505283516; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP; CRISPR-associated endonuclease Cas1 YP_004625082.1 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR021127; KEGG: dhd:Dhaf_3930 CRISPR-associated protein Cas2; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas2; IMG reference gene:2505283517; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2 YP_004625083.1 InterPro IPR003346; KEGG: dat:HRM2_46600 transposase for insertion sequences IS116, IS110 and IS902 (IS111A/IS1328/IS1533 family protein); PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase (IS111A/IS1328/IS1533 family protein); IMG reference gene:2505283518; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004625084.1 COGs: COG2191 Formylmethanofuran dehydrogenase subunit E; InterPro IPR003814; KEGG: cte:CT1717 tungsten formylmethanofuran dehydrogenase, subunit E, putative; PFAM: formylmethanofuran dehydrogenase subunit E region; SPTR: Tungsten formylmethanofuran dehydrogenase, subunit E, putative; IMG reference gene:2505283519; PFAM: FmdE, Molybdenum formylmethanofuran dehydrogenase operon YP_004625085.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: mev:Metev_0515 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Putative uncharacterized protein; IMG reference gene:2505283520; PFAM: Sulfite exporter TauE/SafE YP_004625086.1 IMG reference gene:2505283521 YP_004625087.1 KEGG: gsu:GSU2936 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283522 YP_004625088.1 KEGG: geo:Geob_1340 hypothetical protein; SPTR: Cytochrome c family protein; manually curated; IMG reference gene:2505283523 YP_004625089.1 InterPro IPR003660; KEGG: hth:HTH_1828 putative sensor with HAMP domain; PFAM: histidine kinase HAMP region domain protein; SPTR: Sensory transduction histidine kinase; IMG reference gene:2505283524; PFAM: HAMP domain YP_004625090.1 KEGG: der:Dere_GG14482 GG14482 gene product from transcript GG14482-RA; SPTR: GG14482; IMG reference gene:2505283525 YP_004625091.1 KEGG: mxa:MXAN_2001 FHA domain-containing protein; SPTR: Response regulator receiver protein; IMG reference gene:2505283526 YP_004625092.1 COGs: COG0557 Exoribonuclease R; InterProIPR013223:IPR001900:IPR003029:IPR011805:IPR 004476:IPR011129; KEGG: ate:Athe_2108 ribonuclease R; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; PRIAM: Exoribonuclease II; SMART: Cold shock protein; SPTR: Ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; IMG reference gene:2505283527; PFAM: Ribonuclease B OB domain; RNB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases YP_004625093.1 KEGG: xac:XAC3590 oxidoreductase; SPTR: Oxidoreductase; IMG reference gene:2505283528 YP_004625094.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310:IPR019808; KEGG: dat:HRM2_38420 Hit; PFAM: histidine triad (HIT) protein; SPTR: Hit; IMG reference gene:2505283529; PFAM: Scavenger mRNA decapping enzyme C-term binding YP_004625095.1 COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: drt:Dret_0333 protein of unknown function UPF0027; PFAM: protein of unknown function UPF0027; SPTR: Putative uncharacterized protein; IMG reference gene:2505283530; PFAM: Uncharacterized protein family UPF0027 YP_004625096.1 COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: tye:THEYE_A0329 peptide deformylase; PFAM: formylmethionine deformylase; SPTR: Peptide deformylase; TIGRFAM: peptide deformylase; IMG reference gene:2505283532; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase YP_004625097.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: sfu:Sfum_1679 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Inner-membrane translocator; IMG reference gene:2505283533; PFAM: Branched-chain amino acid transport system / permease component YP_004625098.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: gsu:GSU1733 branched-chain amino acid ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: Branched-chain amino acid ABC transporter, permease protein; IMG reference gene:2505283534; PFAM: Branched-chain amino acid transport system / permease component YP_004625099.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709:IPR001828; KEGG: gsu:GSU1734 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative; PFAM: Extracellular ligand-binding receptor; SPTR: Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative; IMG reference gene:2505283535; PFAM: Receptor family ligand binding region YP_004625100.1 KEGG: dre:322309 sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae); SPTR: Sirtuin 2 (Silent mating type information regulation 2, homolog) 2 (S. cerevisiae); IMG reference gene:2505283536 YP_004625101.1 COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804:IPR019818; KEGG: tye:THEYE_A0114 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; IMG reference gene:2505283537; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase YP_004625102.1 COGs: COG0422 Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: gem:GM21_3893 thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; SPTR: Thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; IMG reference gene:2505283538; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC YP_004625103.1 InterPro IPR007527; KEGG: tte:TTE1567 hypothetical protein; SPTR: SWIM zinc finger domain protein; IMG reference gene:2505283539; PFAM: SWIM zinc finger YP_004625104.1 InterPro IPR018631:IPR012547; KEGG: saf:SULAZ_0155 conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: AAA-ATPase-like; protein of unknown function DUF1703; SPTR: Conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; IMG reference gene:2505283540; PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_004625105.1 COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR005483:IPR005481:IPR005479:IPR005480:IPR 011607:IPR011761:IPR006275; KEGG: dal:Dalk_3481 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; SPTR: Carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; IMG reference gene:2505283541; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit YP_004625106.1 COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR000297; KEGG: dol:Dole_0268 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; IMG reference gene:2505283542; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain YP_004625107.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764; KEGG: dak:DaAHT2_2367 glycoside hydrolase family 3 domain protein; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Glycoside hydrolase family 3 domain protein; IMG reference gene:2505283543; PFAM: Glycosyl hydrolase family 3 N terminal domain YP_004625108.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR004358:IPR013655:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000014:IPR000700; KEGG: dak:DaAHT2_2564 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; response regulator receiver; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; IMG reference gene:2505283544; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004625109.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123:IPR004552; KEGG: dak:DaAHT2_0301 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; IMG reference gene:2505283545; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_004625110.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterProIPR011127:IPR011095:IPR011761:IPR005905:IPR 000291; KEGG: dak:DaAHT2_1971 D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; IMG reference gene:2505283546; PFAM: D-ala D-ala ligase N-terminus; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_004625111.1 InterPro IPR006674:IPR006675; KEGG: sfu:Sfum_4103 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; IMG reference gene:2505283547; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_004625112.1 COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: pfs:PFLU3778 D-lactate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: Probable D-lactate dehydrogenase; IMG reference gene:2505283548; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004625113.1 COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; InterPro IPR001228; KEGG: aca:ACP_1617 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; IMG reference gene:2505283549; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004625114.1 COGs: COG1515 Deoxyinosine 3'endonuclease (endonuclease V); InterPro IPR007581; KEGG: tpt:Tpet_0932 deoxyribonuclease V; PFAM: Endonuclease V; PRIAM: Deoxyribonuclease V; SPTR: Endonuclease V; IMG reference gene:2505283550; PFAM: Endonuclease V YP_004625115.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713:IPR013221:IPR004101; KEGG: dak:DaAHT2_1931 UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; SPTR: UDP-N-acetylmuramate; IMG reference gene:2505283551; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate--alanine ligase YP_004625116.1 InterPro IPR007844; KEGG: sfu:Sfum_3774 membrane protein-like; PFAM: AsmA family protein; SPTR: Membrane protein-like; IMG reference gene:2505283553; PFAM: AsmA family YP_004625117.1 InterPro IPR014144; KEGG: nfa:nfa6770 ATP-dependent DNA ligase; SPTR: Putative ATP-dependent DNA ligase; TIGRFAM: DNA ligase D, 3'-phosphoesterase domain protein; IMG reference gene:2505283554; TIGRFAM: DNA ligase D, 3'-phosphoesterase domain YP_004625118.1 COGs: COG0455 ATPase involved in chromosome partitioning; KEGG: dvl:Dvul_1300 flagellar synthesis regulator FleN, putative; SPTR: Flagellar synthesis regulator FleN, putative; IMG reference gene:2505283555; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004625119.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: sde:Sde_1595 response regulator receiver domain-containing protein; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: GGDEF domain; TIGRFAM: diguanylate cyclase; IMG reference gene:2505283556; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004625120.1 COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; InterProIPR007080:IPR000722:IPR007066:IPR007083:IPR 007081:IPR012754:IPR006592; KEGG: dak:DaAHT2_1458 DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; SMART: RNA polymerase I subunit A domain protein; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; IMG reference gene:2505283557; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form YP_004625121.1 COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243:IPR007121; KEGG: sfu:Sfum_1549 DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; IMG reference gene:2505283558; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit YP_004625122.1 COGs: COG0222 Ribosomal protein L7/L12; InterPro IPR013823:IPR000206; KEGG: dak:DaAHT2_1460 ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; SPTR: Ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; IMG reference gene:2505283559; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12 YP_004625123.1 COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: gem:GM21_3337 50S ribosomal protein L10; PFAM: ribosomal protein L10; SPTR: 50S ribosomal protein L10; IMG reference gene:2505283560; PFAM: Ribosomal protein L10 YP_004625124.1 COGs: COG0081 Ribosomal protein L1; InterPro IPR002143:IPR005878; KEGG: dal:Dalk_1924 50S ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; IMG reference gene:2505283561; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast YP_004625125.1 COGs: COG0080 Ribosomal protein L11; InterProIPR020784:IPR020783:IPR006519:IPR000911:IPR 020785; KEGG: tna:CTN_0219 50S ribosomal protein L11; PFAM: Ribosomal protein L11-like; SMART: ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; IMG reference gene:2505283562; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11 YP_004625126.1 COGs: COG0250 Transcription antiterminator; InterPro IPR001062:IPR006645:IPR005824:IPR015869; KEGG: dol:Dole_0697 NusG antitermination factor; PFAM: NGN domain-containing protein; KOW domain protein; SMART: NGN domain-containing protein; KOW domain protein; SPTR: Transcription antitermination protein nusG; TIGRFAM: transcription termination/antitermination factor NusG; IMG reference gene:2505283563; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG YP_004625127.1 InterPro IPR001901:IPR005807; KEGG: dol:Dole_0696 preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; SPTR: Preprotein translocase, SecE subunit; TIGRFAM: preprotein translocase, SecE subunit; IMG reference gene:2505283564; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial YP_004625128.1 InterPro IPR001705:IPR018264; KEGG: ttj:TTHA0250 50S ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; IMG reference gene:2505283566; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_004625129.1 COGs: COG0050 GTPase - translation elongation factors; InterProIPR000795:IPR004161:IPR004160:IPR004541:IPR 005225; KEGG: ddf:DEFDS_1787 translation elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; SPTR: Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; IMG reference gene:2505283567; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_004625130.1 COGs: COG1150 Heterodisulfide reductase subunit C; InterPro IPR017900; KEGG: dps:DP1108 heterodisulfide reductase, subunit E (HdrE); SPTR: 4Fe-4S ferredoxin, iron-sulfur binding; IMG reference gene:2505283571 YP_004625131.1 COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterProIPR013027:IPR003953:IPR001327:IPR003813:IPR 017896:IPR017900; KEGG: afu:AF0662 heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta; PFAM: methyl-viologen-reducing hydrogenase delta subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Methyl-viologen-reducing hydrogenase delta subunit; IMG reference gene:2505283572; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Methyl-viologen-reducing hydrogenase, delta subunit YP_004625132.1 COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterPro IPR006076:IPR017900; KEGG: dal:Dalk_1568 heterodisulfide reductase, subunit A (HdrA); PFAM: FAD dependent oxidoreductase; SPTR: Heterodisulfide reductase, subunit A (HdrA); IMG reference gene:2505283573; PFAM: FAD dependent oxidoreductase YP_004625133.1 COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953:IPR011803; KEGG: drt:Dret_1966 adenylylsulfate reductase subunit alpha; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: AprA; TIGRFAM: adenylylsulfate reductase, alpha subunit; IMG reference gene:2505283574; PFAM: domain; FAD binding domain; TIGRFAM: adenosine phosphosulphate reductase, alpha subunit YP_004625134.1 InterPro IPR017896:IPR011802:IPR017900; KEGG: dvm:DvMF_2892 adenylylsulfate reductase, beta subunit; SPTR: AprB; TIGRFAM: adenylylsulfate reductase, beta subunit; IMG reference gene:2505283575; PFAM: Adenosine-5'-phosphosulfate reductase beta subunit; TIGRFAM: adenosine phosphosulphate reductase, beta subunit YP_004625135.1 COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: saf:SULAZ_1061 formate dehydrogenase accessory protein FdhD; SPTR: Formate dehydrogenase accessory protein FdhD; IMG reference gene:2505283576 YP_004625136.1 COGs: COG1969 Ni Fe-hydrogenase I cytochrome b subunit; InterPro IPR000516; KEGG: dps:DP0576 Ni/Fe-hydrogenase, cytochrome subunit; SPTR: Probable Ni/Fe-hydrogenase, cytochrome subunit; TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; IMG reference gene:2505283577; PFAM: Cytochrome b(N-terminal)/b6/petB; TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit YP_004625137.1 COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501:IPR018194; KEGG: dps:DP0575 Ni/Fe-hydrogenase, large subunit; PFAM: nickel-dependent hydrogenase large subunit; SPTR: Probable Ni/Fe-hydrogenase, large subunit; IMG reference gene:2505283578; PFAM: Nickel-dependent hydrogenase YP_004625138.1 COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterPro IPR001821:IPR006137:IPR017909:IPR006311; KEGG: dps:DP0574 Ni/Fe-hydrogenase, small subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; PRIAM: Hydrogenase (acceptor); SPTR: Probable Ni/Fe-hydrogenase, small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; IMG reference gene:2505283579; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: hydrogenase (NiFe) small subunit (hydA); Tat (twin-arginine translocation) pathway signal sequence YP_004625139.1 COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: tjr:TherJR_0260 hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; SPTR: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; IMG reference gene:2505283580; PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease YP_004625140.1 COGs: COG0298 Hydrogenase maturation factor; InterPro IPR001109:IPR019812; KEGG: glo:Glov_3064 hydrogenase assembly chaperone HypC/HupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); SPTR: Hydrogenase assembly chaperone hypC/hupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; IMG reference gene:2505283581; PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF YP_004625141.1 COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); InterPro IPR000688; KEGG: hhe:HH0808 hydrogenase nickel incorporation protein; PFAM: hydrogenase expression/synthesis HypA; SPTR: Putative uncharacterized protein; IMG reference gene:2505283582; PFAM: Hydrogenase expression/synthesis hypA family; TIGRFAM: hydrogenase nickel insertion protein HypA YP_004625142.1 COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR003495:IPR004392:IPR012202; KEGG: pmx:PERMA_0918 hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; SPTR: Hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; IMG reference gene:2505283583; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB YP_004625143.1 COGs: COG0068 Hydrogenase maturation factor; InterProIPR001792:IPR011125:IPR006070:IPR004421:IPR 017968; KEGG: sat:SYN_00600 hydrogenase maturation protein; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; SPTR: Hydrogenase maturation protein; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; IMG reference gene:2505283584; PFAM: HypF finger; yrdC domain; Glycoprotease family; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF YP_004625144.1 COGs: COG0621 2-methylthioadenine synthetase; InterProIPR013848:IPR007197:IPR002792:IPR005839:IPR 005840:IPR006638:IPR020612; KEGG: gsu:GSU3205 MiaB-like tRNA modifying enzyme YliG; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Ribosomal protein S12p Asp88 methylthiotransferase; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; IMG reference gene:2505283585; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; radical SAM methylthiotransferase, MiaB/RimO family YP_004625145.1 COGs: COG0853 Aspartate 1-decarboxylase; InterPro IPR003190; KEGG: tau:Tola_2304 aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; IMG reference gene:2505283586; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase YP_004625146.1 COGs: COG0414 Panthothenate synthetase; InterPro IPR003721:IPR004821; KEGG: sat:SYN_00420 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; manually curated; IMG reference gene:2505283587; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain YP_004625147.1 COGs: COG3034 conserved hypothetical protein; InterPro IPR005490; KEGG: ckr:CKR_0710 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: ErfK/YbiS/YcfS/YnhG family protein; IMG reference gene:2505283588; PFAM: L,D-transpeptidase catalytic domain YP_004625148.1 KEGG: ddf:DEFDS_0669 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283589 YP_004625149.1 COGs: COG3640 CO dehydrogenase maturation factor; InterPro IPR014433; KEGG: dak:DaAHT2_1179 cobyrinic acid ac-diamide synthase; SPTR: Cobyrinic acid a,c-diamide synthase; IMG reference gene:2505283590; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004625150.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891:IPR013709:IPR005675:IPR002034; KEGG: sfu:Sfum_2174 putative alpha-isopropylmalate/homocitrate synthase family transferase; PFAM: LeuA allosteric (dimerisation) domain-containing protein; pyruvate carboxyltransferase; SPTR: 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; IMG reference gene:2505283591; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein YP_004625151.1 COGs: COG0527 Aspartokinase; InterProIPR005260:IPR001341:IPR001048:IPR002912:IPR 001057:IPR018042; KEGG: pca:Pcar_1006 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; SPTR: Aspartokinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; IMG reference gene:2505283592; PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase YP_004625152.1 InterPro IPR001623:IPR003095; KEGG: mhu:Mhun_0257 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Heat shock protein DnaJ-like; IMG reference gene:2505283593; PFAM: DnaJ domain YP_004625153.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505283594 YP_004625154.1 COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits; InterPro IPR006067:IPR017896:IPR017900; KEGG: drm:Dred_0697 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: nitrite and sulphite reductase 4Fe-4S region; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; IMG reference gene:2505283595; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; 4Fe-4S binding domain YP_004625155.1 COGs: COG0178 Excinuclease ATPase subunit; InterProIPR004602:IPR003439:IPR017871:IPR018254:IPR 003593; KEGG: nhl:Nhal_0131 excinuclease ABC, A subunit; PFAM: ABC transporter related; SPTR: Excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; IMG reference gene:2505283596; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_004625156.1 COGs: COG1032 Fe-S oxidoreductase; InterProIPR006158:IPR007197:IPR019734:IPR013026:IPR 006638; KEGG: dal:Dalk_4123 radical SAM domain protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; IMG reference gene:2505283597; PFAM: Radical SAM superfamily; B12 binding domain YP_004625157.1 COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197:IPR006638; KEGG: sfu:Sfum_3475 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; IMG reference gene:2505283598; PFAM: Radical SAM superfamily YP_004625158.1 InterPro IPR009875; KEGG: dak:DaAHT2_1202 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: Type IV pilus assembly PilZ; IMG reference gene:2505283599; PFAM: PilZ domain YP_004625159.1 COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: nwa:Nwat_2274 OmpA/MotB domain-containing protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA family protein; IMG reference gene:2505283600; PFAM: OmpA family YP_004625160.1 COGs: COG1291 Flagellar motor component; InterPro IPR002898:IPR000540; KEGG: dak:DaAHT2_1204 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; IMG reference gene:2505283601; PFAM: MotA/TolQ/ExbB proton channel family YP_004625161.1 KEGG: nvi:100118438 stoned B; SPTR: Putative uncharacterized protein; IMG reference gene:2505283602 YP_004625162.1 COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: dak:DaAHT2_1975 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; IMG reference gene:2505283603; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase YP_004625163.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089:IPR004090:IPR000727; KEGG: gob:Gobs_5008 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Methyl-accepting chemotaxis sensory transducer; IMG reference gene:2505283604; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004625164.1 COGs: COG1910 Periplasmic molybdate-binding protein/domain; InterPro IPR010093:IPR000551; KEGG: dak:DaAHT2_2633 DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; SPTR: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain protein, excisionase family; IMG reference gene:2505283605; TIGRFAM: DNA binding domain, excisionase family YP_004625165.1 COGs: COG2998 ABC-type tungstate transport system permease component; KEGG: aco:Amico_1561 ABC transporter, periplasmic substrate-binding protein; SPTR: Tungstate ABC transporter, tungstate-binding protein; IMG reference gene:2505283606 YP_004625166.1 COGs: COG4662 ABC-type tungstate transport system periplasmic component; InterPro IPR000515; KEGG: dat:HRM2_17610 predicted ABC-type molybdate/tungstate transporter, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Predicted ABC-type molybdate/tungstate transporter, permease component; IMG reference gene:2505283607; PFAM: Binding-protein-dependent transport system inner membrane component YP_004625167.1 COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dat:HRM2_17600 HTH-type transcriptional regulator; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: HTH-type transcriptional regulator; IMG reference gene:2505283608; PFAM: ABC transporter YP_004625168.1 KEGG: dvm:DvMF_2105 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283609 YP_004625169.1 KEGG: tye:THEYE_A0759 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283610 YP_004625170.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR020441:IPR 003593; KEGG: tye:THEYE_A0743 response regulator HsfA; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Response regulator HsfA; IMG reference gene:2505283611; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004625171.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR003660:IPR003661:IPR003594:IPR004358:IPR 005467; KEGG: tye:THEYE_A0744 sensory transduction protein kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Sensory Transduction Protein Kinase; IMG reference gene:2505283612; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004625172.1 KEGG: rci:RCIX1427 universal stress protein A; SPTR: Universal stress protein A; IMG reference gene:2505283614 YP_004625173.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: dae:Dtox_1011 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: Putative uncharacterized protein; IMG reference gene:2505283615; PFAM: Sulfite exporter TauE/SafE YP_004625174.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016:IPR006015; KEGG: mif:Metin_0312 UspA domain protein; PFAM: UspA domain-containing protein; SPTR: Universal stress protein; manually curated; IMG reference gene:2505283616; PFAM: Universal stress protein family YP_004625175.1 InterPro IPR002781; KEGG: tye:THEYE_A0738 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Putative uncharacterized protein; IMG reference gene:2505283617; PFAM: Sulfite exporter TauE/SafE YP_004625176.1 InterPro IPR020327; KEGG: afu:AF1562 hypothetical protein; SPTR: Uncharacterized protein AF_1562; IMG reference gene:2505283618 YP_004625177.1 COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680:IPR000802; KEGG: tye:THEYE_A0731 arsenical pump membrane protein; PFAM: Citrate transporter; SPTR: Arsenical pump membrane protein; IMG reference gene:2505283619; PFAM: Citrate transporter YP_004625178.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016:IPR006015; KEGG: tye:THEYE_A1621 universal stress protein family; PFAM: UspA domain-containing protein; SPTR: Universal stress protein family; IMG reference gene:2505283620; PFAM: Universal stress protein family YP_004625179.1 COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680:IPR000802; KEGG: tye:THEYE_A0731 arsenical pump membrane protein; PFAM: Citrate transporter; SPTR: Arsenical pump membrane protein; IMG reference gene:2505283621; PFAM: Citrate transporter YP_004625180.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016:IPR006015; KEGG: tye:THEYE_A1621 universal stress protein family; PFAM: UspA domain-containing protein; SPTR: Universal stress protein family; IMG reference gene:2505283622; PFAM: Universal stress protein family YP_004625181.1 COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase; InterPro IPR001667:IPR004097; KEGG: drt:Dret_1594 putative manganese-dependent inorganic pyrophosphatase; PFAM: DHHA2 domain protein; phosphoesterase RecJ domain protein; PRIAM: Inorganic diphosphatase; SPTR: Inorganic diphosphatase; IMG reference gene:2505283623; PFAM: DHH family; DHHA2 domain YP_004625182.1 KEGG: pmm:PMM1002 aminopeptidase N; SPTR: Probable aminopeptidase N; IMG reference gene:2505283624 YP_004625183.1 IMG reference gene:2505283625 YP_004625184.1 KEGG: sfu:Sfum_2085 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283626 YP_004625185.1 KEGG: pmy:Pmen_2369 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283627; PFAM: Phosphate-starvation-inducible E YP_004625186.1 KEGG: fpl:Ferp_1555 paREP15, putative coiled-coil protein; SPTR: Putative coiled-coil protein; IMG reference gene:2505283628 YP_004625187.1 COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); InterProIPR014763:IPR003594:IPR013507:IPR014790:IPR 020667:IPR014762; KEGG: sat:SYN_02889 DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein MutL; IMG reference gene:2505283629; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL YP_004625188.1 COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022:IPR002627; KEGG: gsu:GSU2000 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; IMG reference gene:2505283630; PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase YP_004625189.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: tdn:Suden_1570 diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: Diguanylate cyclase (GGDEF domain); TIGRFAM: diguanylate cyclase; IMG reference gene:2505283631; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004625190.1 COGs: COG1578 conserved hypothetical protein; InterPro IPR002791:IPR014444; KEGG: adg:Adeg_0546 protein of unknown function DUF89; PFAM: protein of unknown function DUF89; SPTR: Putative uncharacterized protein; IMG reference gene:2505283632; PFAM: Protein of unknown function DUF89 YP_004625191.1 COGs: COG1403 Restriction endonuclease; InterPro IPR002711:IPR003615; KEGG: ade:Adeh_1905 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; IMG reference gene:2505283633; PFAM: HNH endonuclease YP_004625192.1 COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: dvm:DvMF_0284 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; SPTR: CheW protein; IMG reference gene:2505283634; PFAM: CheW-like domain YP_004625193.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623:IPR002939:IPR003095; KEGG: tgr:Tgr7_0973 chaperone protein DnaJ; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Chaperone protein dnaJ; IMG reference gene:2505283635; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain YP_004625194.1 COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR008207:IPR004105:IPR003594:IPR002545:IPR 001789:IPR004358:IPR005467; KEGG: dps:DP2642 Che family two-component system sensory/regulatory protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; SPTR: Two-component system sensory/regulatory protein-like (Che family protein); IMG reference gene:2505283636; PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; Signal transducing histidine kinase, homodimeric domain; Hpt domain YP_004625195.1 COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: psl:Psta_3345 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: MCP methyltransferase, CheR-type; IMG reference gene:2505283637; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain YP_004625196.1 COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR001789:IPR000673:IPR008248; KEGG: ami:Amir_2321 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver modulated CheB methylesterase; IMG reference gene:2505283638; PFAM: CheB methylesterase; Response regulator receiver domain YP_004625197.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: jde:Jden_2000 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; IMG reference gene:2505283639; PFAM: Response regulator receiver domain YP_004625198.1 COGs: COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); InterPro IPR002582:IPR004568:IPR008278; KEGG: aba:Acid345_4518 phosphopantethiene-protein transferase domain-contain protein; PFAM: 4'-phosphopantetheinyl transferase; SPTR: Holo-[acyl-carrier-protein] synthase; TIGRFAM: holo-acyl-carrier-protein synthase; IMG reference gene:2505283640; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-[acyl-carrier-protein] synthase YP_004625199.1 COGs: COG0857 BioD-like N-terminal domain of phosphotransacetylase; InterPro IPR010766:IPR000917; KEGG: dsa:Desal_3044 DRTGG domain protein; PFAM: DRTGG domain protein; SPTR: DRTGG domain protein; IMG reference gene:2505283641; PFAM: DRTGG domain YP_004625200.1 COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR003781:IPR013650:IPR011761; KEGG: cag:Cagg_3834 acetyl coenzyme A synthetase (ADP forming), alpha domain protein; PFAM: CoA-binding domain protein; ATP-grasp domain protein; SPTR: Acetyl coenzyme A synthetase (ADP forming), alpha domain protein; IMG reference gene:2505283642; PFAM: CoA binding domain; ATP-grasp domain; TIGRFAM: acetyl coenzyme A synthetase (ADP forming), alpha domain YP_004625201.1 COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167; KEGG: pru:PRU_0867 ferrous iron transport protein B; PFAM: FeoA family protein; SPTR: Ferrous iron transport protein B; IMG reference gene:2505283643; PFAM: FeoA domain YP_004625202.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: pmx:PERMA_1658 transcriptional regulator; PFAM: ferric-uptake regulator; SPTR: Transcriptional regulator; IMG reference gene:2505283644; PFAM: Ferric uptake regulator family YP_004625203.1 InterPro IPR013424:IPR011449; KEGG: dak:DaAHT2_1785 protein of unknown function DUF1555; PFAM: protein of unknown function DUF1555; SPTR: Putative uncharacterized protein; IMG reference gene:2505283645; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM putative exosortase interaction domain YP_004625204.1 COGs: COG3039 Transposase and inactivated derivatives IS5 family; InterPro IPR002559; KEGG: cyn:Cyan7425_5319 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: Transposase; IMG reference gene:2505283646; PFAM: Transposase DDE domain; Transposase domain (DUF772) YP_004625205.1 COGs: COG1372 Intein/homing endonuclease; InterProIPR013344:IPR006141:IPR013509:IPR000788:IPR 006142:IPR004042:IPR001202:IPR003587:IPR003586; KEGG: dhd:Dhaf_0267 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; SMART: Hedgehog/intein hint domain protein; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; IMG reference gene:2505283648; PFAM: Ribonucleotide reductase, all-alpha domain; Ribonucleotide reductase, barrel domain; TIGRFAM: intein N-terminal splicing region; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; intein C-terminal splicing region YP_004625206.1 COGs: COG0710 3-dehydroquinate dehydratase; InterPro IPR001381; KEGG: dps:DP3013 3-dehydroquinate dehydratase; PFAM: dehydroquinase class I; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type I; IMG reference gene:2505283649; PFAM: Type I 3-dehydroquinase; TIGRFAM: 3-dehydroquinate dehydratase, type I YP_004625207.1 COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR011607:IPR013982; KEGG: dak:DaAHT2_0500 IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SPTR: IMP cyclohydrolase; IMG reference gene:2505283650; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain YP_004625208.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197:IPR017200:IPR006638; KEGG: sfu:Sfum_3056 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; IMG reference gene:2505283651; PFAM: Radical SAM superfamily; TIGRFAM: putative heme d1 biosynthesis radical SAM protein NirJ1; radical SAM additional 4Fe4S-binding domain YP_004625209.1 InterPro IPR001789; KEGG: gsu:GSU0877 response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver modulated PilZ sensor protein; IMG reference gene:2505283652; PFAM: Response regulator receiver domain YP_004625210.1 COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterPro IPR013093:IPR003593; KEGG: sfu:Sfum_3055 ATPase; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; SPTR: ATPase AAA-2 domain protein; IMG reference gene:2505283653; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_004625211.1 COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR005259:IPR014021; KEGG: dol:Dole_0025 primosomal protein N'; SPTR: Primosomal protein N'; TIGRFAM: primosomal protein N'; IMG reference gene:2505283654; TIGRFAM: primosomal protein N' YP_004625212.1 COGs: COG0084 Mg-dependent DNase; InterPro IPR015991:IPR001130:IPR012278:IPR018228; KEGG: sat:SYN_03204 sec-independent protein translocase protein; PFAM: TatD-related deoxyribonuclease; SPTR: Sec-independent protein translocase protein; TIGRFAM: hydrolase, TatD family; IMG reference gene:2505283655; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_004625213.1 COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; InterPro IPR003697; KEGG: dsa:Desal_2463 maf protein; PFAM: Maf family protein; SPTR: Maf protein; TIGRFAM: maf protein; IMG reference gene:2505283656; PFAM: Maf-like protein; TIGRFAM: MAF protein YP_004625214.1 COGs: COG0848 Biopolymer transport protein; InterPro IPR014168:IPR003400; KEGG: tye:THEYE_A0958 TolR protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: TolR protein; TIGRFAM: protein TolR; IMG reference gene:2505283657; PFAM: Biopolymer transport protein ExbD/TolR; TIGRFAM: TolR protein YP_004625215.1 InterPro IPR006260; KEGG: abo:ABO_0757 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: TonB family protein; IMG reference gene:2505283658; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004625216.1 COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659:IPR014167; KEGG: sfu:Sfum_0755 TolB domain-containing protein; SPTR: TolB, N-terminal domain protein; IMG reference gene:2505283659; PFAM: WD40-like Beta Propeller Repeat; TolB amino-terminal domain; TIGRFAM: tol-pal system beta propeller repeat protein TolB YP_004625217.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090:IPR006089; KEGG: tye:THEYE_A0567 acyl-CoA dehydrogenase, short-chain specific; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Acyl-CoA dehydrogenase, short-chain specific; IMG reference gene:2505283660; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004625218.1 COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730:IPR012255; KEGG: tye:THEYE_A1636 electron transfer flavoprotein beta-subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein beta-subunit; IMG reference gene:2505283661; PFAM: Electron transfer flavoprotein domain YP_004625219.1 COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730:IPR014731:IPR001308; KEGG: nth:Nther_1879 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein alpha/beta-subunit; IMG reference gene:2505283662; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain YP_004625220.1 COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: dba:Dbac_2248 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase NPD; SPTR: 2-nitropropane dioxygenase NPD; IMG reference gene:2505283663; PFAM: 2-nitropropane dioxygenase YP_004625221.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterProIPR011283:IPR011284:IPR002198:IPR002347:IPR 020904; KEGG: vpr:Vpar_0699 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Putative uncharacterized protein; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; acetoacetyl-CoA reductase; IMG reference gene:2505283664; PFAM: short chain dehydrogenase; TIGRFAM: acetoacetyl-CoA reductase; 3-oxoacyl-(acyl-carrier-protein) reductase YP_004625222.1 InterPro IPR005357; KEGG: nhl:Nhal_2504 protein of unknown function UPF0150; PFAM: Uncharacterised protein family UPF0150; SPTR: Putative uncharacterized protein; IMG reference gene:2505283665; PFAM: Uncharacterised protein family (UPF0150) YP_004625223.1 InterPro IPR012933; KEGG: nhl:Nhal_2505 hypothetical protein; PFAM: YcfA family protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283666; PFAM: YcfA-like protein YP_004625224.1 COGs: COG0236 Acyl carrier protein; InterPro IPR003231:IPR006163:IPR009081:IPR006162; KEGG: dal:Dalk_3308 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: acyl carrier protein; IMG reference gene:2505283667; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_004625225.1 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR017568:IPR014030:IPR014031:IPR018201; KEGG: tye:THEYE_A0103 beta-ketoacyl-acyl carrier protein synthase II; PFAM: Beta-ketoacyl synthase; SPTR: Beta-ketoacyl-acyl carrier protein synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; IMG reference gene:2505283668; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II YP_004625226.1 COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR004785:IPR003500; KEGG: tal:Thal_0562 ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; PRIAM: Galactose-6-phosphate isomerase; SPTR: Ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; IMG reference gene:2505283669; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family YP_004625227.1 COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR001085:IPR019798; KEGG: ddf:DEFDS_0485 glycine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: Serine hydroxymethyltransferase; IMG reference gene:2505283670; PFAM: Serine hydroxymethyltransferase YP_004625228.1 COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR002125:IPR016192; KEGG: cyc:PCC7424_0712 CMP/dCMP deaminase zinc-binding; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding; IMG reference gene:2505283671; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_004625229.1 COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: drt:Dret_1343 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; IMG reference gene:2505283672; PFAM: ABC transporter YP_004625230.1 COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515; KEGG: drt:Dret_1344 polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; IMG reference gene:2505283673; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_004625231.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638:IPR001320; KEGG: dal:Dalk_1255 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; SPTR: Extracellular solute-binding protein family 3; IMG reference gene:2505283674; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_004625232.1 COGs: COG1794 Aspartate racemase; InterPro IPR004380:IPR015942:IPR018187; KEGG: sdn:Sden_1375 aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; SPTR: Aspartate racemase; TIGRFAM: aspartate racemase; IMG reference gene:2505283675; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: aspartate racemase YP_004625233.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: tle:Tlet_1564 beta-lactamase domain-containing protein; SPTR: Beta-lactamase domain protein; IMG reference gene:2505283676; PFAM: Metallo-beta-lactamase superfamily YP_004625234.1 KEGG: saf:SULAZ_1225 cytochrome c family protein; SPTR: Cytochrome c family protein; IMG reference gene:2505283677; PFAM: Protein of unknown function (DUF3365) YP_004625235.1 COGs: COG0288 Carbonic anhydrase; InterPro IPR001765; KEGG: swo:Swol_2452 carbonic anhydrase-like protein; PFAM: carbonic anhydrase; SPTR: Carbonic anhydrase; IMG reference gene:2505283678; PFAM: Carbonic anhydrase YP_004625236.1 InterPro IPR011031; KEGG: dak:DaAHT2_2113 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283679; PFAM: Doubled CXXCH motif (Paired_CXXCH_1); TIGRFAM: doubled CXXCH domain YP_004625237.1 InterPro IPR010177:IPR011031; KEGG: ddf:DEFDS_0746 multiheme C-type cytochrome; SPTR: Multiheme c-type cytochrome; TIGRFAM: cytochrome C family protein; IMG reference gene:2505283680; PFAM: Doubled CXXCH motif (Paired_CXXCH_1); TIGRFAM: doubled CXXCH domain YP_004625238.1 InterPro IPR001258:IPR013017; KEGG: dak:DaAHT2_2116 NHL repeat containing protein; PFAM: NHL repeat containing protein; SPTR: NHL repeat containing protein; IMG reference gene:2505283681; PFAM: NHL repeat YP_004625239.1 COGs: COG2864 Cytochrome b subunit of formate dehydrogenase; InterPro IPR017970; KEGG: dak:DaAHT2_2115 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283682; PFAM: Cytochrome b(N-terminal)/b6/petB; TIGRFAM: formate dehydrogenase, gamma subunit YP_004625240.1 InterPro IPR011031; KEGG: ddf:DEFDS_0742 multiheme C-type cytochrome; SPTR: Multiheme c-type cytochrome; IMG reference gene:2505283683 YP_004625241.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR004358:IPR005467; KEGG: drt:Dret_0468 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Sensory box histidine kinase PhoR; IMG reference gene:2505283684; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004625242.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: gme:Gmet_2693 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; IMG reference gene:2505283685; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004625243.1 COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: dol:Dole_2078 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase, alpha subunit; TIGRFAM: riboflavin synthase, alpha subunit; IMG reference gene:2505283686; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit YP_004625244.1 COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234; KEGG: geo:Geob_3014 chromosome segregation and condensation protein, ScpB; PFAM: chromosome segregation and condensation protein ScpB; SPTR: Chromosome segregation and condensation protein, ScpB; TIGRFAM: segregation and condensation protein B; IMG reference gene:2505283687; PFAM: Putative transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B YP_004625245.1 KEGG: dak:DaAHT2_0853 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283688 YP_004625246.1 KEGG: dak:DaAHT2_1271 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283689 YP_004625247.1 SPTR: Peptidase M16 domain protein; IMG reference gene:2505283690 YP_004625248.1 COGs: COG0498 Threonine synthase; InterPro IPR004450:IPR001926; KEGG: gme:Gmet_1631 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; PRIAM: Threonine synthase; SPTR: L-threonine synthase; TIGRFAM: threonine synthase; IMG reference gene:2505283691; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase YP_004625249.1 InterPro IPR014793; KEGG: dat:HRM2_42380 DsrD; PFAM: Dissimilatory sulfite reductase D; SPTR: DsrD; IMG reference gene:2505283692; PFAM: Dissimilatory sulfite reductase D (DsrD) YP_004625250.1 COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits; InterProIPR011808:IPR005117:IPR006067:IPR017896:IPR 017900; KEGG: adg:Adeg_2093 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; PRIAM: Hydrogensulfite reductase; SPTR: Sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; IMG reference gene:2505283693; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit YP_004625251.1 COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits; InterPro IPR011806:IPR006067:IPR017896; KEGG: mta:Moth_1601 sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; PRIAM: Hydrogensulfite reductase; SPTR: Dissimilatory sulfite reductase alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; IMG reference gene:2505283694; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit YP_004625252.1 COGs: COG1639 signal transduction protein; InterPro IPR006675:IPR013976; KEGG: dar:Daro_1978 HDIG; PFAM: Metal-dependent hydrolase HDOD; SPTR: HDIG; TIGRFAM: metal dependent phophohydrolase; IMG reference gene:2505283695; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG YP_004625253.1 InterPro IPR004942; KEGG: sfu:Sfum_0317 roadblock/LC7 family protein; PFAM: Roadblock/LC7 family protein; SPTR: Roadblock/LC7 family protein; IMG reference gene:2505283696; PFAM: Roadblock/LC7 domain YP_004625254.1 InterPro IPR001806; KEGG: sfu:Sfum_0318 gliding motility protein (MglA); SPTR: Gliding motility protein (MglA); IMG reference gene:2505283697; PFAM: Ras family YP_004625255.1 KEGG: pkn:PKH_130600 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283698 YP_004625256.1 COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterProIPR001440:IPR007831:IPR001482:IPR019734:IPR 013026:IPR003593; KEGG: sat:SYN_01404 general secretion pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: AAA ATPase; Tetratricopeptide repeat; SPTR: General secretion pathway protein E; IMG reference gene:2505283699; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain YP_004625257.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR000014:IPR013767:IPR003661:IPR003594:IPR 004358:IPR005467:IPR000700; KEGG: tye:THEYE_A0125 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: Sensor histidine kinase; TIGRFAM: PAS sensor protein; IMG reference gene:2505283700; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Protein of unknown function (DUF3365); PAS fold; TIGRFAM: PAS domain S-box YP_004625258.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR020441:IPR 003593; KEGG: sfu:Sfum_2764 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; IMG reference gene:2505283701; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004625259.1 KEGG: drt:Dret_0968 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283702 YP_004625260.1 KEGG: drt:Dret_0967 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283703 YP_004625261.1 InterPro IPR018383; KEGG: drt:Dret_0966 uncharacterized protein family UPF0324; PFAM: Uncharacterised protein family UPF0324; SPTR: Uncharacterized protein family UPF0324; IMG reference gene:2505283704; PFAM: Conserved hypothetical protein 698 YP_004625262.1 KEGG: nwa:Nwat_2662 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283705 YP_004625263.1 COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: dol:Dole_3235 beta-lactamase domain-containing protein; SPTR: Beta-lactamase domain protein; IMG reference gene:2505283706; PFAM: Metallo-beta-lactamase superfamily YP_004625264.1 InterPro IPR001440:IPR019734:IPR013026; KEGG: dba:Dbac_3412 diguanylate cyclase with TPR repeats; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Diguanylate cyclase with TPR repeats; IMG reference gene:2505283707; PFAM: Tetratricopeptide repeat YP_004625265.1 COGs: COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; InterPro IPR004534:IPR018319; KEGG: dak:DaAHT2_0215 L-seryl-tRNA selenium transferase; PFAM: Pyridoxal phosphate-dependent transferase; PRIAM: L-seryl-tRNA(Sec) selenium transferase; SPTR: L-seryl-tRNA selenium transferase; TIGRFAM: L-seryl-tRNA selenium transferase; IMG reference gene:2505283708; PFAM: L-seryl-tRNA selenium transferase; TIGRFAM: seryl-tRNA(sec) selenium transferase YP_004625266.1 KEGG: sul:SYO3AOP1_0961 SMC domain protein; SPTR: SMC domain protein; IMG reference gene:2505283709 YP_004625267.1 KEGG: ddi:DDB_G0293570 RUN domain-containing protein; SPTR: RUN domain-containing protein; IMG reference gene:2505283710 YP_004625268.1 KEGG: tet:TTHERM_00537070 hypothetical protein; SPTR: DNA polymerase III, delta subunit; IMG reference gene:2505283711 YP_004625269.1 InterPro IPR003660; KEGG: ant:Arnit_0401 histidine kinase; PFAM: histidine kinase HAMP region domain protein; SPTR: Histidine kinase; IMG reference gene:2505283712; PFAM: HAMP domain; Protein of unknown function (DUF3365) YP_004625270.1 InterPro IPR011031; KEGG: dat:HRM2_07570 multiheme cytochrome family protein; SPTR: Multiheme cytochrome family protein; IMG reference gene:2505283713 YP_004625271.1 IMG reference gene:2505283714 YP_004625272.1 COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase and inactivated derivative; IMG reference gene:2505283715; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004625273.1 InterPro IPR005358; KEGG: dol:Dole_2665 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: Putative uncharacterized protein; IMG reference gene:2505283716; PFAM: Uncharacterised protein family (UPF0153) YP_004625274.1 KEGG: nhl:Nhal_2691 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283717; PFAM: Protein of unknown function (DUF3135) YP_004625275.1 COGs: COG0206 Cell division GTPase; InterPro IPR000158:IPR003008:IPR018316:IPR020805; KEGG: dol:Dole_2782 cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: cell division protein FtsZ; IMG reference gene:2505283718; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ YP_004625276.1 COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR020823:IPR003494; KEGG: lip:LI1108 cell division protein FtsA; PFAM: cell division protein FtsA; SPTR: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; IMG reference gene:2505283719; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA YP_004625277.1 COGs: COG1589 Cell division septal protein; InterPro IPR013685; KEGG: dal:Dalk_3128 polypeptide-transport-associated domain protein FtsQ-type; PFAM: Polypeptide-transport-associated domain protein FtsQ-type; SPTR: Polypeptide-transport-associated domain protein FtsQ-type; IMG reference gene:2505283720; PFAM: POTRA domain, FtsQ-type YP_004625278.1 COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; InterPro IPR003170:IPR006094:IPR011601:IPR016166; KEGG: glo:Glov_0668 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; IMG reference gene:2505283721; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_004625279.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR005758:IPR000713:IPR013221:IPR004101; KEGG: sfu:Sfum_3470 UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; IMG reference gene:2505283722; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase YP_004625280.1 COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR006009:IPR004276:IPR007235; KEGG: gme:Gmet_0412 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; IMG reference gene:2505283723; PFAM: Glycosyltransferase family 28 C-terminal domain; Glycosyltransferase family 28 N-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_004625281.1 COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR005762:IPR013221:IPR004101; KEGG: dak:DaAHT2_1482 UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: UDP-N-acetylmuramoylalanine/D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; IMG reference gene:2505283724; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_004625282.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR003524:IPR018480:IPR018481; KEGG: dak:DaAHT2_1483 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR: Phospho-N-acetylmuramoyl-pentapeptide transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-trans ferase; IMG reference gene:2505283725; PFAM: Glycosyl transferase family 4; Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase YP_004625283.1 COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR005863:IPR000713:IPR013221:IPR004101; KEGG: cth:Cthe_0977 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-d iaminopimelate/D-alanyl-D-alanylligase; IMG reference gene:2505283726; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_004625284.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterProIPR005761:IPR000713:IPR013221:IPR004101:IPR 018109; KEGG: amu:Amuc_0653 UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; IMG reference gene:2505283727; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase YP_004625285.1 InterPro IPR005543; KEGG: tle:Tlet_1434 peptidoglycan glycosyltransferase; PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; SPTR: Peptidoglycan glycosyltransferase; IMG reference gene:2505283728; PFAM: Penicillin binding protein transpeptidase domain; PASTA domain YP_004625286.1 KEGG: dak:DaAHT2_1487 septum formation initiator; SPTR: Septum formation initiator; IMG reference gene:2505283729 YP_004625287.1 COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; InterPro IPR002903; KEGG: sat:SYN_01737 S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; SPTR: Ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-methyltransferase MraW; manually curated; IMG reference gene:2505283730; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW YP_004625288.1 COGs: COG2001 conserved hypothetical protein; InterPro IPR003444:IPR020603; KEGG: sfu:Sfum_3462 MraZ protein; PFAM: MraZ domain; SPTR: Protein mraZ; TIGRFAM: MraZ protein; IMG reference gene:2505283731; PFAM: MraZ protein; TIGRFAM: mraZ protein YP_004625289.1 InterPro IPR018631:IPR012547; KEGG: saf:SULAZ_0155 conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: AAA-ATPase-like; protein of unknown function DUF1703; SPTR: Conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; IMG reference gene:2505283732; PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_004625290.1 KEGG: tet:TTHERM_01193540 Protein kinase domain containing protein; SPTR: Protein kinase domain containing protein; IMG reference gene:2505283733 YP_004625291.1 COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR020025:IPR003869; KEGG: hth:HTH_1539 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein CapD; SPTR: Polysaccharide biosynthesis protein; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; IMG reference gene:2505283734; PFAM: Polysaccharide biosynthesis protein; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase YP_004625292.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR020026:IPR000653; KEGG: msi:Msm_1536 pleiotropic regulatory protein DegT (PLP-dependent); PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; IMG reference gene:2505283735; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase YP_004625293.1 COGs: COG1861 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase homolog; InterPro IPR003329; KEGG: msi:Msm_1537 acylneuraminate cytidylyltransferase NeuS; PFAM: acylneuraminate cytidylyltransferase; SPTR: Predicted acylneuraminate cytidylyltransferase, NeuS; IMG reference gene:2505283736; PFAM: Cytidylyltransferase YP_004625294.1 COGs: COG3980 Spore coat polysaccharide biosynthesis protein predicted glycosyltransferase; InterPro IPR020023:IPR007235:IPR000182; KEGG: msi:Msm_1538 CMP-sialic acid synthetase, NeuA; PFAM: GCN5-related N-acetyltransferase; Glycosyltransferase 28 domain; SPTR: CMP-sialic acid synthetase, NeuA; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG; IMG reference gene:2505283737; PFAM: Acetyltransferase (GNAT) family; Glycosyltransferase family 28 C-terminal domain; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG YP_004625295.1 COGs: COG2089 Sialic acid synthase; InterPro IPR020030:IPR013132:IPR013974:IPR006190; KEGG: tmt:Tmath_0718 pseudaminic acid synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; PRIAM: N-acetylneuraminate synthase; SPTR: Sialic acid synthase; TIGRFAM: pseudaminic acid synthase; IMG reference gene:2505283738; PFAM: SAF domain; NeuB family; TIGRFAM: pseudaminic acid synthase YP_004625296.1 COGs: COG2604 conserved hypothetical protein; InterPro IPR002826; KEGG: hth:HTH_0655 hypothetical protein; PFAM: protein of unknown function DUF115; SPTR: Putative uncharacterized protein; IMG reference gene:2505283739; PFAM: Alpha-2,3-sialyltransferase (CST-I); Protein of unknown function DUF115 YP_004625297.1 COGs: COG1344 Flagellin and related hook-associated protein; InterProIPR001492:IPR010810:IPR001451:IPR001029:IPR 006162; KEGG: dat:HRM2_36880 putative flagellin; PFAM: flagellin domain protein; flagellin hook IN repeat protein; transferase hexapeptide repeat containing protein; SPTR: Putative flagellin; IMG reference gene:2505283740; PFAM: Bacterial flagellin N-terminal helical region; Flagellin hook IN motif; Bacterial flagellin C-terminal helical region YP_004625298.1 KEGG: cbb:CLD_1842 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283741 YP_004625299.1 COGs: COG1516 Flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: dak:DaAHT2_0290 flagellar protein FliS; PFAM: flagellar protein FliS; SPTR: Flagellar protein FliS; IMG reference gene:2505283742; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS YP_004625300.1 COGs: COG1345 Flagellar capping protein; InterPro IPR003481:IPR010810:IPR010809; KEGG: dat:HRM2_36890 FliD; PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; flagellin hook IN repeat protein; SPTR: FliD; IMG reference gene:2505283743; PFAM: Flagellar hook-associated protein 2 C-terminus; Flagellin hook IN motif YP_004625301.1 COGs: COG1699 conserved hypothetical protein; InterPro IPR003775; KEGG: nde:NIDE2322 flagellar assembly factor FliW; PFAM: protein of unknown function DUF180; SPTR: Putative uncharacterized protein; IMG reference gene:2505283744; PFAM: FliW protein YP_004625302.1 COGs: COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); InterPro IPR003751; KEGG: lbl:LBL_0100 carbon storage regulator; PFAM: carbon storage regulator; SPTR: Carbon storage regulator homolog; TIGRFAM: carbon storage regulator; IMG reference gene:2505283745; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA) YP_004625303.1 COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR013384:IPR001492; KEGG: mta:Moth_0747 flagellar hook-associated protein FlgL; PFAM: flagellin domain protein; SPTR: Flagellin-like; TIGRFAM: flagellar hook-associated protein 3; IMG reference gene:2505283746; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; TIGRFAM: flagellar hook-associated protein 3 YP_004625304.1 COGs: COG1256 Flagellar hook-associated protein; InterPro IPR002371:IPR010930:IPR018247; KEGG: dde:Dde_3152 flagellar hook-associated protein; PFAM: protein of unknown function DUF1078 domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: flagellar hook-associated protein FlgK; IMG reference gene:2505283747; PFAM: Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK YP_004625305.1 InterPro IPR007809; KEGG: rde:RD1_0161 hypothetical protein; PFAM: FlgN family protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283748; PFAM: FlgN protein YP_004625306.1 IMG reference gene:2505283749 YP_004625307.1 InterPro IPR019301; KEGG: csc:Csac_0596 hypothetical protein; PFAM: Flagellar protein FlgJ-like; SPTR: Putative uncharacterized protein; IMG reference gene:2505283750; PFAM: Rod binding protein YP_004625308.1 COGs: COG1706 Flagellar basal-body P-ring protein; InterPro IPR001782; KEGG: gsu:GSU3047 flagellar basal body P-ring protein; PFAM: flagellar P-ring protein; SPTR: Flagellar P-ring protein flgI; IMG reference gene:2505283751; PFAM: Flagellar P-ring protein YP_004625309.1 COGs: COG2063 Flagellar basal body L-ring protein; InterPro IPR000527; KEGG: dak:DaAHT2_2349 flagellar L-ring protein; PFAM: flagellar L-ring protein; SPTR: Flagellar L-ring protein; IMG reference gene:2505283752; PFAM: Flagellar L-ring protein YP_004625310.1 COGs: COG1261 Flagellar basal body P-ring biosynthesis protein; InterPro IPR017585:IPR013974; KEGG: geo:Geob_0629 flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; SPTR: Flageller protein FlgA; TIGRFAM: flagella basal body P-ring formation protein FlgA; IMG reference gene:2505283753; PFAM: SAF domain; TIGRFAM: flagella basal body P-ring formation protein FlgA YP_004625311.1 COGs: COG4786 Flagellar basal body rod protein; InterProIPR020013:IPR012834:IPR001444:IPR010930:IPR 019776; KEGG: dal:Dalk_0993 flagellar basal body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: Flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; IMG reference gene:2505283754; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria YP_004625312.1 COGs: COG4786 Flagellar basal body rod protein; InterPro IPR020013:IPR012836:IPR001444; KEGG: geo:Geob_0627 flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; SPTR: Flagellar basal-body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; IMG reference gene:2505283755; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins YP_004625313.1 COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: dat:HRM2_46890 hypothetical protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283756; PFAM: Dinitrogenase iron-molybdenum cofactor YP_004625314.1 COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900; KEGG: dol:Dole_0576 cobyrinic acid ac-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; IMG reference gene:2505283757; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004625315.1 COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900; KEGG: dat:HRM2_42450 ferredoxin (iron-sulfur cluster-binding protein); SPTR: Ferredoxin (Iron-sulfur cluster-binding protein); IMG reference gene:2505283758; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004625316.1 COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: tai:Taci_0393 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SPTR: Dinitrogenase iron-molybdenum cofactor biosynthesis; IMG reference gene:2505283759; PFAM: Dinitrogenase iron-molybdenum cofactor YP_004625317.1 COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); InterPro IPR005875:IPR003135:IPR011761; KEGG: csc:Csac_1629 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; IMG reference gene:2505283760; PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein YP_004625318.1 COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: csc:Csac_1630 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; IMG reference gene:2505283761; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein YP_004625319.1 COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR004467:IPR000836; KEGG: tal:Thal_1476 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyl transferase; TIGRFAM: orotate phosphoribosyltransferase; IMG reference gene:2505283762; PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase YP_004625320.1 COGs: COG0548 Acetylglutamate kinase; InterPro IPR004662:IPR001048:IPR001057:IPR011148; KEGG: sfu:Sfum_0064 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: Acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; IMG reference gene:2505283763; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase YP_004625321.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505283764 YP_004625322.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: paa:Paes_1086 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; IMG reference gene:2505283765; PFAM: ABC transporter YP_004625323.1 COGs: COG0390 ABC-type uncharacterized transport system permease component; InterPro IPR005226; KEGG: drt:Dret_1437 hypothetical protein; PFAM: Conserved hypothetical protein CHP00245; SPTR: Putative uncharacterized protein; IMG reference gene:2505283766; PFAM: Uncharacterised protein family (UPF0014); TIGRFAM: TIGR00245 family protein YP_004625324.1 COGs: COG3178 phosphotransferase related to Ser/Thr protein kinase; InterPro IPR002575; KEGG: sfu:Sfum_0532 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase; IMG reference gene:2505283767; PFAM: Phosphotransferase enzyme family YP_004625325.1 COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR005835; KEGG: dak:DaAHT2_0857 nucleotidyl transferase; PFAM: Nucleotidyl transferase; SPTR: Nucleotidyl transferase; IMG reference gene:2505283768; PFAM: Nucleotidyl transferase YP_004625326.1 InterPro IPR006312:IPR003369:IPR003998; KEGG: dap:Dacet_2963 twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Twin-arginine translocation protein, TatA/E family; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; IMG reference gene:2505283769; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_004625327.1 COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR019822:IPR002033:IPR019820; KEGG: dat:HRM2_42350 TatC; PFAM: Sec-independent periplasmic protein translocase; SPTR: TatC; TIGRFAM: Sec-independent protein translocase, TatC subunit; IMG reference gene:2505283770; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC YP_004625328.1 COGs: COG0021 Transketolase; InterPro IPR005474:IPR005475:IPR005476; KEGG: sfu:Sfum_1302 transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region; SPTR: Transketolase domain protein; IMG reference gene:2505283771; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_004625329.1 COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterProIPR000014:IPR013656:IPR003661:IPR003594:IPR 004358:IPR005467:IPR000700; KEGG: mxa:MXAN_5785 pilin regulatory protein PilS; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: Pilin regulatory protein PilS; TIGRFAM: PAS sensor protein; IMG reference gene:2505283772; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004625330.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR020441:IPR 003593; KEGG: sat:SYN_02530 two-component response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two-component response regulator; IMG reference gene:2505283773; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004625331.1 KEGG: dal:Dalk_2408 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283774 YP_004625332.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439:IPR013611:IPR017871:IPR003593; KEGG: pca:Pcar_1735 ATP-binding component of transport system for maltose; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; SPTR: ATP-binding component of transport system for maltose; IMG reference gene:2505283775; PFAM: ABC transporter; TOBE domain YP_004625333.1 COGs: COG0555 ABC-type sulfate transport system permease component; InterPro IPR006469:IPR011867:IPR000515; KEGG: pca:Pcar_1736 NifC-like ABC-type porter; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: NifC-like ABC-type porter; TIGRFAM: NifC-like ABC-type porter; molybdate ABC transporter, inner membrane subunit; IMG reference gene:2505283776; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: molybdate ABC transporter, permease protein; NifC-like ABC-type porter YP_004625334.1 COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR006242:IPR002638; KEGG: cyc:PCC7424_4264 ModD protein; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: ModD protein; TIGRFAM: modD protein; IMG reference gene:2505283777; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; putative molybdenum utilization protein ModD YP_004625335.1 COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR005950:IPR006059; KEGG: pca:Pcar_1738 molybdenum ABC-type transport system, periplasmic component; PFAM: extracellular solute-binding protein family 1; SPTR: Molybdenum ABC-type transport system, periplasmic component; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; IMG reference gene:2505283778; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein YP_004625336.1 IMG reference gene:2505283779 YP_004625337.1 COGs: COG1027 Aspartate ammonia-lyase; InterPro IPR000362:IPR018951:IPR020557; KEGG: mta:Moth_1273 aspartate ammonia-lyase; PFAM: fumarate lyase; Fumarase C-like; SPTR: Fumarase; IMG reference gene:2505283780; PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: aspartate ammonia-lyase YP_004625338.1 KEGG: adg:Adeg_1242 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283781 YP_004625339.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR007197:IPR010722:IPR006638; KEGG: adg:Adeg_1241 thiamine biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Biotin and thiamin synthesis associated; IMG reference gene:2505283782; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: iron-only hydrogenase maturation rSAM protein HydG; thiazole biosynthesis protein ThiH YP_004625340.1 KEGG: ate:Athe_0168 putative transcriptional regulator, CopG family; SPTR: Putative uncharacterized protein; IMG reference gene:2505283783; TIGRFAM: putative iron-only hydrogenase system regulator YP_004625341.1 COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterProIPR013352:IPR004108:IPR003149:IPR017896:IPR 017900; KEGG: hor:Hore_06330 NADH dehydrogenase (ubiquinone) 75 kDa subunit; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; PRIAM: Ferredoxin hydrogenase; SPTR: NADH dehydrogenase (Ubiquinone) 75 kDa subunit; TIGRFAM: hydrogenase, Fe-only; IMG reference gene:2505283784; PFAM: Iron only hydrogenase large subunit, C-terminal domain; Iron hydrogenase small subunit; TIGRFAM: hydrogenase, Fe-only YP_004625342.1 COGs: COG2864 Cytochrome b subunit of formate dehydrogenase; InterPro IPR000516; KEGG: slp:Slip_1532 formate dehydrogenase, putative; SPTR: Putative formate dehydrogenase; IMG reference gene:2505283785; PFAM: Cytochrome b(N-terminal)/b6/petB; TIGRFAM: formate dehydrogenase, gamma subunit YP_004625343.1 InterPro IPR003149; KEGG: she:Shewmr4_3251 iron hydrogenase, small subunit; PFAM: iron hydrogenase small subunit; SPTR: Iron hydrogenase, small subunit; IMG reference gene:2505283786; PFAM: Iron hydrogenase small subunit YP_004625344.1 COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterPro IPR004108:IPR017896:IPR017900; KEGG: tye:THEYE_A1726 hydrogenase; PFAM: hydrogenase large subunit domain protein; PRIAM: Ferredoxin hydrogenase; SPTR: Hydrogenase; IMG reference gene:2505283787; PFAM: Iron only hydrogenase large subunit, C-terminal domain; 4Fe-4S binding domain; TIGRFAM: hydrogenase, Fe-only YP_004625345.1 COGs: COG1160 GTPase; InterPro IPR005225:IPR002917:IPR001806:IPR003577; KEGG: pca:Pcar_1629 GTPases; PFAM: GTP-binding protein HSR1-related; SMART: Ras small GTPase, Ras type; SPTR: Predicted GTPases; TIGRFAM: small GTP-binding protein; IMG reference gene:2505283788; PFAM: GTPase of unknown function; TIGRFAM: hydrogenase maturation GTPase HydF; small GTP-binding protein domain YP_004625346.1 COGs: COG0502 Biotin synthase; InterPro IPR007197:IPR005244:IPR006638; KEGG: pth:PTH_0983 biotin synthase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Biotin synthase and related enzymes; manually curated; IMG reference gene:2505283789; PFAM: Radical SAM superfamily; TIGRFAM: iron-only hydrogenase maturation rSAM protein HydE YP_004625347.1 KEGG: mfe:Mefer_0555 formylmethanofuran dehydrogenase subunit E region; SPTR: Formylmethanofuran dehydrogenase subunit E region; IMG reference gene:2505283790; PFAM: FmdE, Molybdenum formylmethanofuran dehydrogenase operon YP_004625348.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: tye:THEYE_A1082 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Periplasmic binding protein; IMG reference gene:2505283791; PFAM: Periplasmic binding protein YP_004625349.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: sfu:Sfum_0494 transport system permease protein; PFAM: transport system permease protein; SPTR: Transport system permease protein; IMG reference gene:2505283792; PFAM: FecCD transport family YP_004625350.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR017871:IPR003593; KEGG: mif:Metin_0717 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; IMG reference gene:2505283793; PFAM: ABC transporter YP_004625351.1 KEGG: mar:MAE_29090 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283795 YP_004625352.1 KEGG: mja:MJ0909 hypothetical protein; SPTR: Plasmid stabilization system; IMG reference gene:2505283796 YP_004625353.1 KEGG: ecb:100052471 coiled-coil domain containing 88A; SPTR: Putative uncharacterized protein; IMG reference gene:2505283801 YP_004625354.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: gme:Gmet_1234 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: Extracellular solute-binding protein, family 5; IMG reference gene:2505283802; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004625355.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063:IPR012089; KEGG: saf:SULAZ_1054 PP-loop domain protein; PFAM: PP-loop domain protein; SPTR: PP-loop domain protein; IMG reference gene:2505283803; PFAM: PP-loop family; TIGRFAM: TIGR00269 family protein YP_004625356.1 COGs: COG1295 membrane protein; InterPro IPR017039:IPR004664:IPR000944; KEGG: ade:Adeh_0697 ribonuclease BN, putative; PFAM: ribonuclease BN; protein of unknown function UPF0074; SPTR: Ribonuclease BN, putative; TIGRFAM: ribonuclease BN; IMG reference gene:2505283804; PFAM: Ribonuclease BN-like family; Transcriptional regulator; TIGRFAM: YihY family protein (not ribonuclease BN) YP_004625357.1 COGs: COG4796 Type II secretory pathway component HofQ; InterPro IPR013355:IPR011662:IPR004846:IPR001775; KEGG: pfo:Pfl01_0409 type II and III secretion system protein; PFAM: type II and III secretion system protein; Secretin/TonB short domain; SPTR: Pilus secretin; TIGRFAM: type IV pilus secretin PilQ; IMG reference gene:2505283805; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ YP_004625358.1 KEGG: mxa:MXAN_5773 putative lipoprotein; SPTR: Fimbrial assembly protein; IMG reference gene:2505283806; PFAM: Pilus assembly protein, PilP YP_004625359.1 KEGG: dak:DaAHT2_2311 pilus assembly protein PilO; SPTR: Pilus assembly protein PilO; IMG reference gene:2505283807; PFAM: Pilus assembly protein, PilO YP_004625360.1 InterPro IPR007813; KEGG: dol:Dole_0332 fimbrial assembly family protein; PFAM: Fimbrial assembly family protein; SPTR: Fimbrial assembly family protein; IMG reference gene:2505283808; PFAM: Fimbrial assembly protein (PilN) YP_004625361.1 COGs: COG4972 Tfp pilus assembly protein ATPase PilM; KEGG: dol:Dole_0333 type IV pilus assembly protein PilM; SPTR: Type IV pilus assembly protein PilM; IMG reference gene:2505283809; PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM YP_004625362.1 COGs: COG0481 Membrane GTPase LepA; InterProIPR005225:IPR006297:IPR000795:IPR004161:IPR 000640:IPR013842; KEGG: chy:CHY_0410 GTP-binding protein LepA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; GTP-binding protein LepA domain protein; SPTR: GTP-binding protein lepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; IMG reference gene:2505283810; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain YP_004625363.1 COGs: COG0681 Signal peptidase I; InterProIPR000223:IPR019759:IPR019756:IPR019757:IPR 019758; KEGG: tye:THEYE_A0098 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; PRIAM: Signal peptidase I; SPTR: Signal peptidase I; TIGRFAM: signal peptidase I; IMG reference gene:2505283811; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_004625364.1 KEGG: dat:HRM2_20530 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283812 YP_004625365.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: GGDEF; TIGRFAM: diguanylate cyclase; IMG reference gene:2505283813; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004625366.1 COGs: COG1639 signal transduction protein; InterPro IPR006675:IPR013976:IPR003607; KEGG: dak:DaAHT2_0261 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal-dependent phosphohydrolase, HD subdomain; TIGRFAM: metal dependent phophohydrolase; IMG reference gene:2505283814; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG YP_004625367.1 KEGG: dak:DaAHT2_0260 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283815 YP_004625368.1 COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR004412:IPR000120:IPR020556; KEGG: dal:Dalk_4493 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; IMG reference gene:2505283816; PFAM: Amidase; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit YP_004625369.1 COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; InterPro IPR003837; KEGG: tpd:Teth39_1693 aspartyl/glutamyl-tRNA amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase C subunit; SPTR: Glutamyl-tRNA(Gln) amidotransferase, C subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; IMG reference gene:2505283817; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit YP_004625370.1 COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR004399:IPR013749:IPR019293; KEGG: pho:PH1155 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; Phosphomethylpyrimidine kinase; PRIAM: Phosphomethylpyrimidine kinase; SPTR: 446aa long hypothetical thiamine biosynthesis protein; TIGRFAM: phosphomethylpyrimidine kinase; IMG reference gene:2505283818; PFAM: Phosphomethylpyrimidine kinase; Archaeal phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase YP_004625371.1 COGs: COG0778 Nitroreductase; InterPro IPR020051:IPR000415; KEGG: drt:Dret_0780 SagB-type dehydrogenase domain protein; PFAM: nitroreductase; SPTR: SagB-type dehydrogenase domain protein; TIGRFAM: SagB-type dehydrogenase domain; IMG reference gene:2505283819; PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain YP_004625372.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dal:Dalk_1097 glycosyl transferase family 9; PFAM: glycosyl transferase family 9; SPTR: Glycosyl transferase family 9; IMG reference gene:2505283820; PFAM: Glycosyltransferase family 9 (heptosyltransferase) YP_004625373.1 KEGG: dal:Dalk_4656 integrin-like repeat-containing protein; SPTR: Integrin-like repeat-containing protein; IMG reference gene:2505283821; PFAM: Curli production assembly/transport component CsgG YP_004625374.1 COGs: COG0145 N-methylhydantoinase A/acetone carboxylase beta subunit; InterPro IPR008040:IPR002821; KEGG: aae:aq_708 N-methylhydantoinase A; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; PRIAM: 5-oxoprolinase (ATP-hydrolyzing); SPTR: N-methylhydantoinase A; IMG reference gene:2505283822; PFAM: Hydantoinase/oxoprolinase; Hydantoinase/oxoprolinase N-terminal region YP_004625375.1 COGs: COG0622 phosphoesterase; InterPro IPR000979:IPR004843:IPR020935; KEGG: dak:DaAHT2_0278 phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; SPTR: Phosphodiesterase, MJ0936 family; TIGRFAM: phosphodiesterase, MJ0936 family; IMG reference gene:2505283823; TIGRFAM: phosphoesterase, MJ0936 family YP_004625376.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: nhl:Nhal_1151 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; IMG reference gene:2505283824; PFAM: Hsp20/alpha crystallin family YP_004625377.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: eba:ebB88 putative heat shock protein; PFAM: heat shock protein Hsp20; SPTR: Heat shock protein, Hsp20 family; IMG reference gene:2505283825; PFAM: Hsp20/alpha crystallin family YP_004625378.1 COGs: COG1944 conserved hypothetical protein; InterPro IPR003776:IPR001440:IPR019734:IPR013026; KEGG: dol:Dole_1241 hypothetical protein; PFAM: protein of unknown function DUF181; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; IMG reference gene:2505283826; PFAM: YcaO-like family; Tetratricopeptide repeat; TIGRFAM: uncharacterized domain YP_004625379.1 InterPro IPR018449:IPR017896:IPR017900; KEGG: sat:SYN_00800 ferridoxin; PFAM: NIL domain; SPTR: Ferridoxin; IMG reference gene:2505283827; PFAM: 4Fe-4S binding domain; NIL domain YP_004625380.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR004506; KEGG: swo:Swol_0464 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; IMG reference gene:2505283828; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_004625381.1 COGs: COG0688 Phosphatidylserine decarboxylase; InterPro IPR004428:IPR003817; KEGG: sat:SYN_00913 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase proenzyme; TIGRFAM: phosphatidylserine decarboxylase related protein; IMG reference gene:2505283830; PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein YP_004625382.1 COGs: COG1183 Phosphatidylserine synthase; InterPro IPR004533:IPR000462; KEGG: dak:DaAHT2_0542 CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol/serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; IMG reference gene:2505283831; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase YP_004625383.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR005671:IPR000891:IPR013709:IPR002034; KEGG: tye:THEYE_A0650 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein; SPTR: 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; IMG reference gene:2505283832; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type YP_004625384.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: phe:Phep_3751 sigma-54 factor interaction domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Putative two-component response regulator transcriptional regulatory protein; IMG reference gene:2505283833; PFAM: Response regulator receiver domain YP_004625385.1 COGs: COG0443 Molecular chaperone; InterPro IPR013126:IPR001023:IPR018181; KEGG: dal:Dalk_0767 DnaK-related protein; PFAM: Heat shock protein 70; SPTR: DnaK-related protein; IMG reference gene:2505283834; PFAM: DNA-K related protein; Hsp70 protein YP_004625386.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: slt:Slit_1730 integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: Integration host factor subunit alpha; IMG reference gene:2505283835; PFAM: Bacterial DNA-binding protein YP_004625387.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638:IPR018313; KEGG: nam:NAMH_0588 extracellular solute-binding protein, family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: Extracellular solute-binding protein, family 3; IMG reference gene:2505283836; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_004625388.1 COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515; KEGG: nam:NAMH_0587 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; IMG reference gene:2505283837; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_004625389.1 COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515; KEGG: nam:NAMH_0586 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; IMG reference gene:2505283838; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_004625390.1 COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: nam:NAMH_0585 amino acid permease ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Amino acid permease ATP-binding protein; IMG reference gene:2505283839; PFAM: ABC transporter YP_004625391.1 COGs: COG0145 N-methylhydantoinase A/acetone carboxylase beta subunit; InterPro IPR008040:IPR002821; KEGG: ddf:DEFDS_0768 N-methylhydantoinase A; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; PRIAM: 5-oxoprolinase (ATP-hydrolyzing); SPTR: N-methylhydantoinase A; IMG reference gene:2505283840; PFAM: Hydantoinase/oxoprolinase; Hydantoinase/oxoprolinase N-terminal region YP_004625392.1 COGs: COG0146 N-methylhydantoinase B/acetone carboxylase alpha subunit; InterPro IPR003692; KEGG: ddf:DEFDS_0769 N-methylhydantoinase B; PFAM: Hydantoinase B/oxoprolinase; PRIAM: 5-oxoprolinase (ATP-hydrolyzing); SPTR: N-methylhydantoinase B; IMG reference gene:2505283841; PFAM: Hydantoinase B/oxoprolinase YP_004625393.1 COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; KEGG: ddf:DEFDS_0770 C4-dicarboxylate transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 7; SPTR: C4-dicarboxylate transporter, substrate-binding protein; IMG reference gene:2505283842; PFAM: Bacterial extracellular solute-binding protein, family 7 YP_004625394.1 COGs: COG4665 TRAP-type mannitol/chloroaromatic compound transport system small permease component; InterPro IPR007387; KEGG: ddf:DEFDS_0771 C4-dicarboxylate transporter small subunit; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; SPTR: C4-dicarboxylate transporter, small subunit; IMG reference gene:2505283843; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component YP_004625395.1 COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR004681:IPR010656; KEGG: ddf:DEFDS_0772 C4-dicarboxylate transporter large subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: C4-dicarboxylate transporter, large subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; IMG reference gene:2505283844; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit YP_004625396.1 COGs: COG1504 conserved hypothetical protein; InterPro IPR007523; KEGG: adg:Adeg_1298 protein of unknown function DUF498; PFAM: protein of unknown function DUF498; SPTR: Putative uncharacterized protein; IMG reference gene:2505283845; PFAM: Protein of unknown function (DUF498/DUF598) YP_004625397.1 COGs: COG0216 Protein chain release factor A; InterPro IPR004373:IPR005139:IPR000352; KEGG: csc:Csac_1523 peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; SPTR: Peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; IMG reference gene:2505283846; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1 YP_004625398.1 COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: cno:NT01CX_0552 50S ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; IMG reference gene:2505283847; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_004625399.1 COGs: COG1158 Transcription termination factor; InterProIPR004665:IPR011112:IPR011113:IPR000194:IPR 011129:IPR003593; KEGG: sfu:Sfum_1711 transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; SMART: Cold shock protein; AAA ATPase; SPTR: Transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; IMG reference gene:2505283848; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho YP_004625400.1 COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR005720:IPR012135:IPR001295; KEGG: hth:HTH_0418 dihydroorotate dehydrogenase; PFAM: dihydroorotate oxidase; SPTR: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase family protein; IMG reference gene:2505283849; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein YP_004625401.1 COGs: COG0176 Transaldolase; InterPro IPR004731:IPR001585:IPR018225; KEGG: aae:aq_119 putative translaldolase; PFAM: Transaldolase; SPTR: Probable transaldolase; TIGRFAM: transaldolase; IMG reference gene:2505283850; PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family YP_004625402.1 COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518:IPR018223; KEGG: dak:DaAHT2_2212 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; IMG reference gene:2505283851; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase YP_004625403.1 COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: sfu:Sfum_1586 trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase; SPTR: Trans-hexaprenyltranstransferase; IMG reference gene:2505283852; PFAM: Polyprenyl synthetase YP_004625404.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828:IPR000709; KEGG: dvm:DvMF_1478 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor; IMG reference gene:2505283853; PFAM: Receptor family ligand binding region YP_004625405.1 COGs: COG0546 phosphatase; InterPro IPR005834:IPR005833; KEGG: dak:DaAHT2_2039 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; IMG reference gene:2505283854; PFAM: haloacid dehalogenase-like hydrolase YP_004625406.1 KEGG: rms:RMA_0544 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283855 YP_004625407.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR004358:IPR 005467; KEGG: sus:Acid_7874 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SPTR: Integral membrane sensor signal transduction histidine kinase; IMG reference gene:2505283856; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004625408.1 COGs: COG2195 Di- and tripeptidase; InterPro IPR010162:IPR008007:IPR002933:IPR011650; KEGG: dat:HRM2_27370 PepT; PFAM: peptidase dimerisation domain protein; peptidase M20; peptidase M42 family protein; SPTR: PepT; TIGRFAM: peptidase T-like protein; IMG reference gene:2505283857; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T-like protein YP_004625409.1 COGs: COG1254 Acylphosphatase; InterPro IPR001792:IPR020456:IPR017968; KEGG: sfu:Sfum_1427 acylphosphatase; PFAM: acylphosphatase; SPTR: Acylphosphatase; IMG reference gene:2505283858; PFAM: Acylphosphatase YP_004625410.1 COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646:IPR000595; KEGG: dak:DaAHT2_0452 protein of unknown function DUF342; PFAM: protein of unknown function DUF342; SPTR: Putative uncharacterized protein; IMG reference gene:2505283859; PFAM: Protein of unknown function (DUF342) YP_004625411.1 COGs: COG1993 conserved hypothetical protein; InterPro IPR003793; KEGG: ddf:DEFDS_0610 hypothetical protein; PFAM: protein of unknown function DUF190; SPTR: Putative uncharacterized protein; IMG reference gene:2505283860; PFAM: Uncharacterized ACR, COG1993 YP_004625412.1 COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; InterPro IPR003691; KEGG: sti:Sthe_1756 CrcB protein; PFAM: Camphor resistance CrcB protein; SPTR: Protein crcB homolog; TIGRFAM: CrcB protein; IMG reference gene:2505283861; PFAM: CrcB-like protein; TIGRFAM: crcB protein YP_004625413.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: tye:THEYE_A0589 hypothetical protein; PFAM: glycosyl transferase family 39; SPTR: Putative uncharacterized protein; IMG reference gene:2505283862; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004625414.1 InterPro IPR000326; KEGG: min:Minf_1458 membrane-associated phospholipid phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: Membrane-associated phospholipid phosphatase; IMG reference gene:2505283863; PFAM: PAP2 superfamily YP_004625415.1 KEGG: pca:Pcar_0652 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283864 YP_004625416.1 COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: dol:Dole_0590 peptidase U61 LD-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: Peptidase U61 LD-carboxypeptidase A; IMG reference gene:2505283865; PFAM: LD-carboxypeptidase YP_004625417.1 COGs: COG1521 Putative transcriptional regulator protein; InterPro IPR004619; KEGG: gur:Gura_2816 pantothenate kinase; PFAM: Bvg accessory factor; PRIAM: Pantothenate kinase; SPTR: Type III pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; IMG reference gene:2505283866; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III YP_004625418.1 COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR007848; KEGG: dat:HRM2_11520 PrmA3; PFAM: methyltransferase small; SPTR: PrmA3; IMG reference gene:2505283867; PFAM: Ribosomal protein L11 methyltransferase (PrmA) YP_004625419.1 InterPro IPR001915:IPR001440:IPR019734:IPR013026; KEGG: dak:DaAHT2_0005 peptidase M48 Ste24p; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; peptidase M48 Ste24p; SMART: Tetratricopeptide repeat; SPTR: Peptidase M48 Ste24p; IMG reference gene:2505283868; PFAM: Peptidase family M48 YP_004625420.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: tye:THEYE_A1083 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; IMG reference gene:2505283869; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004625421.1 COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: adg:Adeg_1646 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Magnesium chelatase; SPTR: Cobaltochelatase; IMG reference gene:2505283870; PFAM: CobN/Magnesium Chelatase YP_004625422.1 COGs: COG0117 Pyrimidine deaminase; InterProIPR004794:IPR011549:IPR002125:IPR002734:IPR 016192; KEGG: mta:Moth_0915 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; SPTR: 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; IMG reference gene:2505283871; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD YP_004625423.1 KEGG: dal:Dalk_3199 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283872 YP_004625424.1 COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR004811:IPR006674:IPR007685:IPR004095:IPR 002912:IPR003607; KEGG: geo:Geob_2145 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein; PRIAM: GTP diphosphokinase; SMART: metal-dependent phosphohydrolase HD region; SPTR: (P)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; manually curated; IMG reference gene:2505283874; PFAM: HD domain; ACT domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_004625425.1 InterPro IPR001383; KEGG: kol:Kole_1660 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; IMG reference gene:2505283875; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_004625426.1 COGs: COG0305 Replicative DNA helicase; InterPro IPR007692:IPR007693:IPR007694:IPR003593; KEGG: dak:DaAHT2_1151 replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; SPTR: DnaB helicase; TIGRFAM: replicative DNA helicase; IMG reference gene:2505283876; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_004625427.1 KEGG: pyo:PY01733 19096-22891; SPTR: Predicted protein; IMG reference gene:2505283877 YP_004625428.1 COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; InterPro IPR003526:IPR020555; KEGG: csc:Csac_1587 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; IMG reference gene:2505283878; PFAM: YgbB family; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_004625429.1 COGs: COG0322 Nuclease subunit of the excinuclease complex; InterPro IPR004791:IPR000305:IPR001943:IPR001162; KEGG: dak:DaAHT2_0851 excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: Excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; IMG reference gene:2505283879; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit YP_004625430.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505283880; PFAM: Transposase IS200 like YP_004625431.1 COGs: COG2191 Formylmethanofuran dehydrogenase subunit E; InterPro IPR003814; KEGG: dak:DaAHT2_0551 formylmethanofuran dehydrogenase subunit E region; PFAM: formylmethanofuran dehydrogenase subunit E region; SPTR: Formylmethanofuran dehydrogenase subunit E region; IMG reference gene:2505283881; PFAM: Prokaryotic dksA/traR C4-type zinc finger; FmdE, Molybdenum formylmethanofuran dehydrogenase operon YP_004625432.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR004622; KEGG: pca:Pcar_1692 DNA polymerase III, gamma/tau subunits; SPTR: DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta prime subunit; IMG reference gene:2505283882; TIGRFAM: DNA polymerase III, delta' subunit YP_004625433.1 COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; InterPro IPR005750:IPR001986; KEGG: dol:Dole_2551 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; IMG reference gene:2505283883; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004625434.1 COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR004556:IPR019874:IPR007848:IPR002052; KEGG: tye:THEYE_A0370 HemK family protein; PFAM: methyltransferase small; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: HemK family protein; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; IMG reference gene:2505283884; PFAM: Methyltransferase small domain; TIGRFAM: HemK family putative methylases; protein-(glutamine-N5) methyltransferase, release factor-specific YP_004625435.1 InterPro IPR002912; KEGG: mem:Memar_1825 beta-lactamase domain-containing protein; PFAM: amino acid-binding ACT domain protein; SPTR: Beta-lactamase domain protein; IMG reference gene:2505283885; PFAM: Metallo-beta-lactamase superfamily; ACT domain YP_004625436.1 COGs: COG0173 Aspartyl-tRNA synthetase; InterProIPR004524:IPR004365:IPR004364:IPR004115:IPR 002312:IPR006195; KEGG: dak:DaAHT2_2033 aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; IMG reference gene:2505283886; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type YP_004625437.1 COGs: COG0380 Trehalose-6-phosphate synthase; InterPro IPR012766:IPR003337:IPR006379:IPR001830; KEGG: mem:Memar_2216 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; PFAM: glycosyl transferase family 20; trehalose-phosphatase; SPTR: Alpha,alpha-trehalose-phosphate synthase (UDP-forming); TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; IMG reference gene:2505283887; PFAM: Trehalose-phosphatase; Glycosyltransferase family 20; TIGRFAM: trehalose-phosphatase; alpha,alpha-trehalose-phosphate synthase [UDP-forming]; HAD-superfamily hydrolase, subfamily IIB YP_004625438.1 KEGG: pca:Pcar_3110 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283888 YP_004625439.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sfu:Sfum_2348 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; IMG reference gene:2505283889; PFAM: Glycosyl transferases group 1 YP_004625440.1 InterPro IPR001123; KEGG: hbu:Hbut_0772 hypothetical protein; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Conserved archaeal protein; IMG reference gene:2505283890; PFAM: LysE type translocator YP_004625441.1 COGs: COG1995 Pyridoxal phosphate biosynthesis protein; InterPro IPR005255; KEGG: dak:DaAHT2_1165 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; IMG reference gene:2505283891; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase YP_004625442.1 COGs: COG0731 Fe-S oxidoreductase; InterPro IPR007197:IPR006638; KEGG: dak:DaAHT2_2249 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; IMG reference gene:2505283892; PFAM: Radical SAM superfamily YP_004625443.1 COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218; KEGG: afr:AFE_2671 phospho-2-dehydro-3-deoxyheptonate aldolase, putative; PFAM: DAHP synthetase I/KDSA; SPTR: Phospho-2-dehydro-3-deoxyheptonate aldolase, putative; IMG reference gene:2505283893; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_004625444.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR008910:IPR006685; KEGG: dde:Dde_2565 hypothetical protein; PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283894; PFAM: Mechanosensitive ion channel; Conserved TM helix YP_004625445.1 COGs: COG0468 RecA/RadA recombinase; InterProIPR013765:IPR001553:IPR020588:IPR020587:IPR 020584:IPR003593; KEGG: azc:AZC_2855 recombinase A; PFAM: RecA domain protein; SMART: AAA ATPase; SPTR: Protein recA; TIGRFAM: recA protein; IMG reference gene:2505283895; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA YP_004625446.1 COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611; KEGG: mfa:Mfla_0769 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase; PFAM: PfkB domain protein; SPTR: Bifunctional protein hldE; IMG reference gene:2505283896; PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I YP_004625447.1 COGs: COG0679 permease; InterPro IPR004776; KEGG: dak:DaAHT2_2426 auxin efflux carrier; PFAM: Auxin Efflux Carrier; SPTR: Auxin Efflux Carrier; IMG reference gene:2505283897; PFAM: Membrane transport protein YP_004625448.1 COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474:IPR010827:IPR000184; KEGG: dak:DaAHT2_1309 outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Surface antigen (D15):Surface antigen variable number; TIGRFAM: outer membrane protein assembly complex, YaeT protein; IMG reference gene:2505283898; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein YP_004625449.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR015854:IPR017871:IPR003593; KEGG: ppd:Ppro_3016 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; IMG reference gene:2505283899; PFAM: ABC transporter YP_004625450.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR011925:IPR003838; KEGG: sfu:Sfum_3743 LolC/E family lipoprotein releasing system, transmembrane protein; PFAM: protein of unknown function DUF214; SPTR: Lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; IMG reference gene:2505283900; PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family YP_004625451.1 COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR002313:IPR006195:IPR004365:IPR004364:IPR 018149; KEGG: sfu:Sfum_3742 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; IMG reference gene:2505283901; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial YP_004625452.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016:IPR000212; KEGG: drt:Dret_2402 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: UvrD/REP helicase; IMG reference gene:2505283902; PFAM: UvrD/REP helicase YP_004625453.1 COGs: COG1639 signal transduction protein; InterPro IPR013976:IPR003607; KEGG: dal:Dalk_3268 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase; IMG reference gene:2505283903; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG YP_004625454.1 COGs: COG5483 conserved hypothetical protein; InterPro IPR014519; KEGG: tye:THEYE_A0530 hypothetical protein; SPTR: Conserved Archaeal protein; IMG reference gene:2505283904; PFAM: Protein of unknown function, DUF488 YP_004625455.1 InterPro IPR013429; KEGG: dal:Dalk_1639 regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; SPTR: Regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; IMG reference gene:2505283905; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family YP_004625456.1 COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: abu:Abu_2024 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: Conserved hypothetical integral membrane protein; IMG reference gene:2505283906; PFAM: SNARE associated Golgi protein YP_004625457.1 KEGG: tye:THEYE_A1137 UvrD/REP helicase domain protein, putative; SPTR: UvrD/REP helicase domain protein, putative; IMG reference gene:2505283907; PFAM: Domain of unknown function DUF83 YP_004625458.1 COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR014016:IPR014017:IPR000212; KEGG: dds:Ddes_0979 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: UvrD/REP helicase; IMG reference gene:2505283908; PFAM: UvrD/REP helicase YP_004625459.1 KEGG: ccv:CCV52592_0802 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283909 YP_004625460.1 COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR016431:IPR007197; KEGG: mtp:Mthe_1490 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; IMG reference gene:2505283910; PFAM: Radical SAM superfamily YP_004625461.1 COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: tye:THEYE_A0592 membrane-bound serine protease; PFAM: protein of unknown function DUF107; SPTR: Membrane-bound serine protease; IMG reference gene:2505283911; PFAM: Clp protease; NfeD-like YP_004625462.1 COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: dak:DaAHT2_2578 transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: Transcriptional regulator, LysR family; IMG reference gene:2505283912; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain YP_004625463.1 COGs: COG1200 RecG-like helicase; InterProIPR014021:IPR001650:IPR004365:IPR011545:IPR 014001:IPR004609; KEGG: gur:Gura_1869 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; IMG reference gene:2505283913; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; OB-fold nucleic acid binding domain; TIGRFAM: ATP-dependent DNA helicase RecG YP_004625464.1 COGs: COG0460 Homoserine dehydrogenase; InterProIPR016204:IPR005106:IPR001342:IPR002912:IPR 019811; KEGG: sfu:Sfum_1218 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; SPTR: Homoserine dehydrogenase; IMG reference gene:2505283914; PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain; ACT domain YP_004625465.1 COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836:IPR005904; KEGG: sfu:Sfum_1422 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; IMG reference gene:2505283915; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase YP_004625466.1 KEGG: dak:DaAHT2_2408 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283916 YP_004625467.1 KEGG: dak:DaAHT2_2407 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283917 YP_004625468.1 KEGG: dak:DaAHT2_2406 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283918 YP_004625469.1 InterPro IPR001455; KEGG: dak:DaAHT2_2405 SirA family protein; PFAM: SirA-like domain-containing protein; SPTR: SirA-like; IMG reference gene:2505283919; PFAM: SirA-like protein YP_004625470.1 InterPro IPR007272; KEGG: dak:DaAHT2_2412 protein of unknown function DUF395 YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Putative uncharacterized protein; IMG reference gene:2505283920; PFAM: YeeE/YedE family (DUF395) YP_004625471.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863:IPR001431; KEGG: dak:DaAHT2_1974 peptidase M16 domain protein; PFAM: peptidase M16 domain protein; SPTR: Peptidase M16-like; IMG reference gene:2505283921; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_004625472.1 KEGG: pgu:PGUG_02080 hypothetical protein; SPTR: Golgi to ER traffic protein 1; IMG reference gene:2505283922 YP_004625473.1 COGs: COG2014 conserved hypothetical protein; KEGG: ppd:Ppro_1948 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283923; PFAM: Domain of unknown function (DUF364) YP_004625474.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR002744:IPR019591:IPR000808; KEGG: sti:Sthe_0642 protein of unknown function DUF59; PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; SPTR: Putative uncharacterized protein; IMG reference gene:2505283924; PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; ATPase MipZ YP_004625475.1 COGs: COG0486 GTPase; InterPro IPR004520:IPR018948:IPR002917:IPR005225; KEGG: dak:DaAHT2_2558 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; SPTR: tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; IMG reference gene:2505283925; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE YP_004625476.1 COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: sfu:Sfum_2598 single-stranded nucleic acid binding R3H domain-containing protein; PFAM: single-stranded nucleic acid binding R3H domain-containing protein; SMART: single-stranded nucleic acid binding R3H domain-containing protein; SPTR: Single-stranded nucleic acid binding R3H domain protein; IMG reference gene:2505283926; PFAM: R3H domain YP_004625477.1 COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708:IPR013308:IPR019998:IPR020001; KEGG: dps:DP0855 hypothetical protein; PFAM: 60 kDa inner membrane insertion protein; SPTR: Conserved hypothetical membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; IMG reference gene:2505283927; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain YP_004625478.1 COGs: COG0759 conserved hypothetical protein; InterPro IPR002696; KEGG: lsa:LSA1120 hypothetical protein; PFAM: protein of unknown function DUF37; SPTR: UPF0161 protein LCA_1120; IMG reference gene:2505283928; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD YP_004625479.1 COGs: COG0594 RNase P protein component; InterPro IPR000100:IPR020539; KEGG: sat:SYN_01012 ribonuclease P protein component; PFAM: ribonuclease P protein; SPTR: Ribonuclease P protein component; TIGRFAM: ribonuclease P protein component; IMG reference gene:2505283929; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial YP_004625480.1 InterPro IPR000271:IPR020939; KEGG: tme:Tmel_1628 50S ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; IMG reference gene:2505283930; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type YP_004625481.1 KEGG: nis:NIS_0012 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283931; PFAM: YfdX protein YP_004625482.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR005110:IPR001453:IPR005111:IPR020817; KEGG: sfu:Sfum_0615 molybdenum cofactor synthesis domain-containing protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV; SPTR: Molybdenum cofactor synthesis domain; TIGRFAM: molybdenum cofactor synthesis domain protein; IMG reference gene:2505283932; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_004625483.1 COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: bgl:bglu_1g17180 ParA protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283934; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004625484.1 KEGG: rca:Rcas_0617 transcriptional modulator of MazE/toxin, MazF; SPTR: Transcriptional modulator of MazE/toxin, MazF; IMG reference gene:2505283935; PFAM: PemK-like protein YP_004625485.1 KEGG: srm:SRM_00767 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283936; PFAM: Protein of unknown function (DUF2281) YP_004625486.1 KEGG: sfu:Sfum_0165 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283937 YP_004625487.1 COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; InterPro IPR003509; KEGG: dak:DaAHT2_1166 protein of unknown function UPF0102; PFAM: Uncharacterised protein family UPF0102; SPTR: Putative uncharacterized protein; IMG reference gene:2505283938; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: TIGR00252 family protein YP_004625488.1 COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: lbu:LBUL_1192 ribonuclease HII; PFAM: ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease HII; manually curated; IMG reference gene:2505283939; PFAM: Ribonuclease HII YP_004625489.1 COGs: COG0335 Ribosomal protein L19; InterPro IPR001857:IPR018257; KEGG: chy:CHY_1428 50S ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; IMG reference gene:2505283940; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type YP_004625490.1 COGs: COG4752 conserved hypothetical protein; InterPro IPR019230; KEGG: tjr:TherJR_2045 protein of unknown function DUF2168; PFAM: Protein of unknown function DUF2168; SPTR: Putative uncharacterized protein; IMG reference gene:2505283941; PFAM: Uncharacterized protein conserved in bacteria (DUF2168) YP_004625491.1 COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; InterPro IPR002649:IPR016009; KEGG: dtu:Dtur_1534 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; IMG reference gene:2505283942; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase YP_004625492.1 COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523; KEGG: afl:Aflv_1374 metal ion transporter; PFAM: Mg2 transporter protein CorA family protein; SPTR: Metal ion transporter; IMG reference gene:2505283943; PFAM: CorA-like Mg2+ transporter protein YP_004625493.1 COGs: COG1968 Uncharacterized bacitracin resistance protein; InterPro IPR003824; KEGG: adg:Adeg_1845 undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; SPTR: Undecaprenyl-diphosphatase; TIGRFAM: undecaprenol kinase; IMG reference gene:2505283944; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP YP_004625494.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001940; KEGG: dth:DICTH_1189 serine protease Do; SPTR: Serine protease Do; IMG reference gene:2505283945 YP_004625495.1 InterPro IPR019410; KEGG: dak:DaAHT2_2335 methyltransferase-16, putative; PFAM: Methyltransferase-16, putative; SPTR: Putative uncharacterized protein; IMG reference gene:2505283946; PFAM: Putative methyltransferase YP_004625496.1 InterPro IPR000462; KEGG: hoh:Hoch_0245 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-alcohol phosphatidyltransferase; IMG reference gene:2505283947; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_004625497.1 InterPro IPR000962; KEGG: noc:Noc_2010 C4-type zinc finger DksA/TraR family protein; SPTR: C4-type zinc finger protein, DksA/TraR family; IMG reference gene:2505283948; PFAM: Prokaryotic dksA/traR C4-type zinc finger YP_004625498.1 KEGG: pca:Pcar_0017 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283949 YP_004625499.1 KEGG: dps:DP2272 temperature sensitive supressor; SPTR: Related to temperature sensitive supressor; IMG reference gene:2505283950 YP_004625500.1 KEGG: sat:SYN_01357 putative cytoplasmic protein; SPTR: Hypothetical cytosolic protein; IMG reference gene:2505283951 YP_004625501.1 InterPro IPR003305:IPR011449:IPR013424; KEGG: mac:MA2808 hypothetical protein; PFAM: protein of unknown function DUF1555; Carbohydrate-binding CenC domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283952; TIGRFAM: PEP-CTERM putative exosortase interaction domain YP_004625502.1 COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR002695:IPR013982; KEGG: dak:DaAHT2_1420 IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme formylation region; SPTR: IMP cyclohydrolase; IMG reference gene:2505283953; PFAM: AICARFT/IMPCHase bienzyme YP_004625503.1 COGs: COG0421 Spermidine synthase; InterPro IPR001045; KEGG: chy:CHY_1240 spermidine synthase; PFAM: Spermine synthase; SPTR: Spermidine synthase; IMG reference gene:2505283954; PFAM: Spermine/spermidine synthase; TIGRFAM: spermidine synthase YP_004625504.1 COGs: COG1586 S-adenosylmethionine decarboxylase; InterPro IPR003826:IPR017716; KEGG: ddf:DEFDS_0969 adenosylmethionine decarboxylase; PFAM: S-adenosylmethionine decarboxylase related; SPTR: Adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; IMG reference gene:2505283955; PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Bacillus form YP_004625505.1 COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; InterPro IPR010656:IPR011853; KEGG: nam:NAMH_0701 transporter; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: Transporter; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; IMG reference gene:2505283957; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein YP_004625506.1 COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852; KEGG: nam:NAMH_0700 immunogenic protein; SPTR: Immunogenic protein; TIGRFAM: TRAP transporter solute receptor, TAXI family; IMG reference gene:2505283958; PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family YP_004625507.1 COGs: COG1641 conserved hypothetical protein; InterPro IPR002822; KEGG: dth:DICTH_1434 hypothetical protein; PFAM: protein of unknown function DUF111; SPTR: UPF0272 protein DICTH_1434; IMG reference gene:2505283959; PFAM: Protein of unknown function DUF111; TIGRFAM: TIGR00299 family protein YP_004625508.1 COGs: COG0398 conserved hypothetical protein; InterPro IPR015414; KEGG: dal:Dalk_0616 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; IMG reference gene:2505283960; PFAM: SNARE associated Golgi protein YP_004625509.1 COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR006059:IPR005673; KEGG: dge:Dgeo_0649 periplasmic phosphate binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: ABC-type phosphate transport system, periplasmic component, PstS; TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; IMG reference gene:2505283961; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate ABC transporter, phosphate-binding protein YP_004625510.1 InterPro IPR011031; KEGG: sse:Ssed_4024 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; selenocysteine-containing protein; IMG reference gene:2505283962 YP_004625511.1 InterPro IPR005797; KEGG: nmr:Nmar_1543 cytochrome b/b6 domain-containing protein; PFAM: Cytochrome b/b6 domain; SPTR: Cytochrome b/b6 domain; IMG reference gene:2505283963 YP_004625512.1 COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941:IPR005805; KEGG: sth:STH3146 plastoquinol--plastocyanin reductase; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Plastoquinol--plastocyanin reductase; IMG reference gene:2505283964; PFAM: Rieske [2Fe-2S] domain YP_004625513.1 COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR002792:IPR010280:IPR001566; KEGG: gem:GM21_2158 RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM; SPTR: RNA methyltransferase, TrmA family; TIGRFAM: RNA methyltransferase, TrmA family; IMG reference gene:2505283965; PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA YP_004625514.1 COGs: COG0215 Cysteinyl-tRNA synthetase; InterProIPR001926:IPR015803:IPR001216:IPR005856:IPR 002308; KEGG: sat:SYN_00075 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: cysteine synthase; cysteinyl-tRNA synthetase; IMG reference gene:2505283966; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthases; cysteinyl-tRNA synthetase; cysteine synthase B YP_004625515.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR002078:IPR001789:IPR002197:IPR003593:IPR 020441; KEGG: sat:SYN_01093 response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; IMG reference gene:2505283967; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004625516.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR005467:IPR003661:IPR003594:IPR004358; KEGG: tye:THEYE_A0262 sensory box histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Signal transduction histidine kinase; IMG reference gene:2505283968; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004625517.1 KEGG: gur:Gura_3412 nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: Putative uncharacterized protein; IMG reference gene:2505283969 YP_004625518.1 COGs: COG3839 ABC-type sugar transport systems ATPase components; InterPro IPR003439:IPR013611:IPR003593:IPR017871; KEGG: ant:Arnit_1355 ABC transporter-like protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; SPTR: ABC transporter related protein; IMG reference gene:2505283970; PFAM: ABC transporter; TOBE domain YP_004625519.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dge:Dgeo_2662 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: ABC-type sugar transport system, periplasmic component; manually curated; IMG reference gene:2505283971; PFAM: Bacterial extracellular solute-binding protein YP_004625520.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: tra:Trad_0587 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; IMG reference gene:2505283972; PFAM: Binding-protein-dependent transport system inner membrane component YP_004625521.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: dge:Dgeo_2664 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type sugar transport system, permease component; IMG reference gene:2505283973; PFAM: Binding-protein-dependent transport system inner membrane component YP_004625522.1 COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: ddf:DEFDS_1578 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; IMG reference gene:2505283974; PFAM: Glycerophosphoryl diester phosphodiesterase family YP_004625523.1 InterPro IPR003346; KEGG: dat:HRM2_46600 transposase for insertion sequences IS116, IS110 and IS902 (IS111A/IS1328/IS1533 family protein); PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase (IS111A/IS1328/IS1533 family protein); IMG reference gene:2505283975; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004625524.1 KEGG: saf:SULAZ_1167 putative lipoprotein; SPTR: Putative lipoprotein; IMG reference gene:2505283976 YP_004625525.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: gur:Gura_4012 tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Tyrosine recombinase XerC; IMG reference gene:2505283977; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerC YP_004625526.1 COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; InterPro IPR001353; KEGG: sfu:Sfum_0066 ATP-dependent protease peptidase subunit; PFAM: 20S proteasome A and B subunits; SPTR: ATP-dependent protease subunit HslV; IMG reference gene:2505283978; PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit YP_004625527.1 COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; InterPro IPR004491:IPR013093:IPR019489:IPR003593; KEGG: sfu:Sfum_0065 ATP-dependent protease ATP-binding subunit HslU; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: ATP-dependent protease ATPase subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; IMG reference gene:2505283979; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent protease HslVU, ATPase subunit YP_004625528.1 COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197; KEGG: sfu:Sfum_1766 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; IMG reference gene:2505283980; PFAM: Radical SAM superfamily YP_004625529.1 COGs: COG1376 conserved hypothetical protein; InterPro IPR005490; KEGG: tye:THEYE_A1296 LysM domain protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: LysM domain protein; manually curated; IMG reference gene:2505283981; PFAM: L,D-transpeptidase catalytic domain YP_004625530.1 KEGG: pca:Pcar_2027 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283982 YP_004625531.1 KEGG: tva:TVAG_193720 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein, putative; IMG reference gene:2505283983 YP_004625532.1 InterPro IPR007412; KEGG: sat:SYN_02814 negative regulator of flagellin synthesis; PFAM: Anti-sigma-28 factor FlgM family protein; SPTR: Anti-sigma-28 factor, FlgM; IMG reference gene:2505283984; PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM YP_004625533.1 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: hsm:HSM_0164 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase, family 2; IMG reference gene:2505283985; PFAM: Glycosyl transferase family 2 YP_004625534.1 InterPro IPR001173; KEGG: bav:BAV2236 lipopolysaccharide core biosynthesis glycosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Group 2 glycosyl transferase; IMG reference gene:2505283986; PFAM: Glycosyl transferase family 2 YP_004625535.1 InterPro IPR007016; KEGG: sdl:Sdel_1811 O-antigen polymerase; PFAM: O-antigen polymerase; SPTR: O-antigen polymerase; IMG reference gene:2505283987; PFAM: O-Antigen ligase YP_004625536.1 KEGG: plt:Plut_1797 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505283988 YP_004625537.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003439:IPR017940:IPR001140:IPR003593:IPR 017871; KEGG: tye:THEYE_A2094 ABC transporter, ATP-binding protein, MsbA family; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding protein, MsbA family; IMG reference gene:2505283989; PFAM: ABC transporter transmembrane region; ABC transporter YP_004625538.1 SPTR: Peptide chain release factor 2; manually curated; IMG reference gene:2505283991; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2 YP_004625539.1 COGs: COG0815 Apolipoprotein N-acyltransferase; InterPro IPR004563:IPR003010; KEGG: geo:Geob_3094 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; IMG reference gene:2505283992; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase YP_004625540.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR005170; KEGG: gme:Gmet_2368 CBS:transporter-associated region; PFAM: CBS domain containing protein; transporter-associated region; SPTR: CBS:Transporter-associated region; IMG reference gene:2505283993; PFAM: CBS domain; Transporter associated domain YP_004625541.1 InterPro IPR006976; KEGG: kko:Kkor_0148 VanZ family protein; PFAM: VanZ family protein; SPTR: VanZ family protein; IMG reference gene:2505283994; PFAM: VanZ like family YP_004625542.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: gur:Gura_3734 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein; IMG reference gene:2505283995; PFAM: Predicted permease YjgP/YjgQ family YP_004625543.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: dak:DaAHT2_1374 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein; IMG reference gene:2505283996; PFAM: Predicted permease YjgP/YjgQ family YP_004625544.1 COGs: COG1427 periplasmic solute-binding protein; InterPro IPR003773; KEGG: dak:DaAHT2_0569 protein of unknown function DUF178; PFAM: protein of unknown function DUF178; SPTR: Putative uncharacterized protein; IMG reference gene:2505283997; PFAM: Putative periplasminc binding protein (DUF178) YP_004625545.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509:IPR014344; KEGG: sde:Sde_0139 FkbH; PFAM: polysaccharide deacetylase; SPTR: Predicted xylanase/chitin deacetylase; TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; IMG reference gene:2505283998; PFAM: Domain of unknown function (DUF3473); Polysaccharide deacetylase; TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily YP_004625546.1 InterPro IPR005357; KEGG: mem:Memar_1245 hypothetical protein; PFAM: Uncharacterised protein family UPF0150; SPTR: Putative uncharacterized protein; IMG reference gene:2505283999; PFAM: Uncharacterised protein family (UPF0150) YP_004625547.1 InterPro IPR012933; KEGG: mem:Memar_1246 YcfA family protein; PFAM: YcfA family protein; SPTR: YcfA family protein; IMG reference gene:2505284000; PFAM: YcfA-like protein YP_004625548.1 KEGG: edi:EDI_136720 ribosomal RNA methyltransferase; SPTR: Ribosomal RNA methyltransferase, putative; IMG reference gene:2505284001 YP_004625549.1 InterPro IPR007712; KEGG: ana:asl4561 hypothetical protein; PFAM: plasmid stabilization system; SPTR: Asl4561 protein; IMG reference gene:2505284002; PFAM: Plasmid stabilisation system protein YP_004625550.1 COGs: COG5653 Protein involved in cellulose biosynthesis (CelD); InterPro IPR003447:IPR017469; KEGG: geo:Geob_2975 FemAB-related protein, PEP-Cterm system-associated; SPTR: Putative uncharacterized protein; TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; IMG reference gene:2505284003; PFAM: FemAB family; TIGRFAM: FemAB-related protein, PEP-CTERM system-associated YP_004625551.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296:IPR017521; KEGG: dat:HRM2_19850 glycosyl transferase (group I); PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase (Group I); TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; IMG reference gene:2505284004; PFAM: Glycosyl transferases group 1; TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated YP_004625552.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: amc:MADE_01302 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; IMG reference gene:2505284005; PFAM: Glycosyl transferases group 1 YP_004625553.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR017932:IPR000583:IPR001962:IPR006426; KEGG: tkm:TK90_2515 exosortase 1 system-associated amidotransferase 1; PFAM: asparagine synthase; glutamine amidotransferase class-II; SPTR: Exosortase 1 system-associated amidotransferase 1; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); IMG reference gene:2505284006; PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing) YP_004625554.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pat:Patl_1197 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; IMG reference gene:2505284007; PFAM: Glycosyl transferases group 1 YP_004625555.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sfu:Sfum_0023 xylose isomerase domain-containing protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Xylose isomerase domain protein TIM barrel; IMG reference gene:2505284008; PFAM: Xylose isomerase-like TIM barrel YP_004625556.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: nis:NIS_1315 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Aminotransferase; IMG reference gene:2505284009; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_004625557.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR017472:IPR017475; KEGG: hya:HY04AAS1_0831 undecaprenyl-phosphate galactose phosphotransferase, WbaP; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; IMG reference gene:2505284010; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP YP_004625558.1 InterPro IPR018631:IPR012547; KEGG: hya:HY04AAS1_1317 protein of unknown function DUF1703; PFAM: AAA-ATPase-like; protein of unknown function DUF1703; SPTR: AAA-ATPase-like protein; IMG reference gene:2505284011; PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_004625559.1 COGs: COG1555 DNA uptake protein and related DNA-binding protein; InterPro IPR000445:IPR003583:IPR004509; KEGG: tai:Taci_1122 competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; SPTR: Competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; IMG reference gene:2505284012; PFAM: Helix-hairpin-helix motif; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; comEA protein YP_004625560.1 IMG reference gene:2505284013 YP_004625561.1 COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase and inactivated derivative; IMG reference gene:2505284014; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004625562.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: tye:THEYE_A0178 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284015 YP_004625563.1 InterPro IPR018631:IPR012547; KEGG: saf:SULAZ_0094 conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: AAA-ATPase-like; protein of unknown function DUF1703; SPTR: AAA-ATPase-like protein; IMG reference gene:2505284016; PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_004625564.1 InterPro IPR002716; KEGG: bcv:Bcav_2739 PilT protein domain protein; PFAM: PilT protein domain protein; SPTR: PilT protein domain protein; IMG reference gene:2505284017; PFAM: PIN domain YP_004625565.1 InterPro IPR007159:IPR006339; KEGG: bcv:Bcav_2738 transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein; SPTR: Transcriptional regulator, AbrB family; TIGRFAM: transcriptional regulator, AbrB family; IMG reference gene:2505284018; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family YP_004625566.1 KEGG: apo:Arcpr_0700 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284019 YP_004625567.1 InterPro IPR002716; KEGG: mhu:Mhun_2151 PilT protein-like; PFAM: PilT protein domain protein; SPTR: PilT protein-like; IMG reference gene:2505284020; PFAM: PIN domain YP_004625568.1 InterPro IPR007159; KEGG: sfu:Sfum_2576 AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain-containing protein; SPTR: Transcriptional regulator, AbrB family; IMG reference gene:2505284021; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family YP_004625569.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: sul:SYO3AOP1_1531 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; IMG reference gene:2505284022; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_004625570.1 COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR005888; KEGG: saf:SULAZ_0364 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; IMG reference gene:2505284023; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_004625571.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: saf:SULAZ_0363 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; IMG reference gene:2505284024; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_004625572.1 KEGG: gur:Gura_3825 hypothetical protein; SPTR: S23 ribosomal protein; IMG reference gene:2505284025; PFAM: S23 ribosomal protein YP_004625573.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: saf:SULAZ_0360 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; IMG reference gene:2505284026; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form YP_004625574.1 COGs: COG0438 Glycosyltransferase; InterPro IPR015393:IPR001296; KEGG: bvu:BVU_2400 glycosyl transferase family protein; PFAM: protein of unknown function DUF1972; glycosyl transferase group 1; SPTR: Glycosyltransferase-like; IMG reference gene:2505284027; PFAM: Domain of unknown function (DUF1972); Glycosyl transferases group 1 YP_004625575.1 InterPro IPR021137; KEGG: bcg:BCG9842_B1717 spore coat polysaccharide biosynthesis protein SpsB; PFAM: Ribosomal protein L35; SPTR: Spore coat polysaccharide biosynthesis protein spsB; IMG reference gene:2505284028 YP_004625576.1 KEGG: bmd:BMD_5212 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284029 YP_004625577.1 InterPro IPR000863; KEGG: amr:AM1_5717 sulfotransferase; PFAM: sulfotransferase; SPTR: Sulfotransferase domain superfamily; IMG reference gene:2505284030; PFAM: Sulfotransferase domain YP_004625578.1 InterPro IPR002797; KEGG: clj:CLJU_c05530 putative polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; IMG reference gene:2505284031; PFAM: Polysaccharide biosynthesis protein YP_004625579.1 COGs: COG2089 Sialic acid synthase; InterPro IPR006190:IPR013132:IPR013974; KEGG: dvu:DVU0349 NeuB family protein; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; PRIAM: N-acetylneuraminate synthase; SPTR: NeuB family protein; IMG reference gene:2505284032; PFAM: SAF domain; NeuB family YP_004625580.1 COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR003329; KEGG: mru:mru_1876 CMP-N-acetylneuraminic acid synthetase NeuA; PFAM: acylneuraminate cytidylyltransferase; PRIAM: N-acylneuraminate cytidylyltransferase; SPTR: CMP-N-acetylneuraminic acid synthetase NeuA; IMG reference gene:2505284033; PFAM: Cytidylyltransferase; Glycosyltransferase family 28 C-terminal domain YP_004625581.1 KEGG: bpf:BpOF4_06585 S23 ribosomal; SPTR: S23 ribosomal; IMG reference gene:2505284035; PFAM: S23 ribosomal protein YP_004625582.1 COGs: COG5573 nucleic-acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: ana:alr3622 hypothetical protein; PFAM: PilT protein domain protein; SPTR: Alr3622 protein; IMG reference gene:2505284036; PFAM: PIN domain YP_004625583.1 KEGG: saf:SULAZ_0340 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284037 YP_004625584.1 COGs: COG1672 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: mja:MJ1659 hypothetical protein; SMART: AAA ATPase; SPTR: Uncharacterized ATP-binding protein MJ1659; IMG reference gene:2505284038; PFAM: Archaeal ATPase YP_004625585.1 KEGG: cpb:Cphamn1_1908 S23 ribosomal protein; SPTR: S23 ribosomal protein; IMG reference gene:2505284039; PFAM: S23 ribosomal protein YP_004625586.1 COGs: COG0217 conserved hypothetical protein; InterPro IPR002876; KEGG: sfu:Sfum_0996 hypothetical protein; PFAM: protein of unknown function DUF28; SPTR: UPF0082 protein Sfum_0996; IMG reference gene:2505284040; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family YP_004625587.1 COGs: COG0817 Holliday junction resolvasome endonuclease subunit; InterPro IPR002176; KEGG: tgr:Tgr7_2236 crossover junction endodeoxyribonuclease; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease ruvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; IMG reference gene:2505284041; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC YP_004625588.1 COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; InterPro IPR000085:IPR013849:IPR011114:IPR003583; KEGG: tye:THEYE_A0877 Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA domain I; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Holliday junction DNA helicase RuvA; IMG reference gene:2505284042; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit YP_004625589.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; InterProIPR004605:IPR008823:IPR008824:IPR003959:IPR 003593; KEGG: chy:CHY_1522 Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; SMART: AAA ATPase; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: Holliday junction DNA helicase RuvB; IMG reference gene:2505284043; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit YP_004625590.1 COGs: COG0413 Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: adg:Adeg_1877 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; IMG reference gene:2505284044; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004625591.1 COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterProIPR017896:IPR013027:IPR006076:IPR003813:IPR 017900; KEGG: apo:Arcpr_0774 methyl-viologen-reducing hydrogenase delta subunit; PFAM: methyl-viologen-reducing hydrogenase delta subunit; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; SPTR: Methyl-viologen-reducing hydrogenase delta subunit; IMG reference gene:2505284045; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; Pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S binding domain; FAD dependent oxidoreductase YP_004625592.1 InterPro IPR013517; KEGG: afu:AF1946 cysteine proteinase, putative; PFAM: FG-GAP repeat protein; SPTR: PKD domain protein; IMG reference gene:2505284046; PFAM: FG-GAP repeat YP_004625593.1 COGs: COG0558 Phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: mem:Memar_0174 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-alcohol phosphatidyltransferase; IMG reference gene:2505284047; PFAM: CDP-alcohol phosphatidyltransferase YP_004625594.1 COGs: COG0313 methyltransferase; InterPro IPR000878:IPR008189; KEGG: chy:CHY_0055 hypothetical protein; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Putative uncharacterized protein; IMG reference gene:2505284048; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family YP_004625595.1 COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; InterPro IPR016425:IPR004588; KEGG: dak:DaAHT2_0253 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; IMG reference gene:2505284049; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_004625596.1 COGs: COG1260 Myo-inositol-1-phosphate synthase; InterPro IPR002587:IPR013021; KEGG: aae:aq_1763 hypothetical protein; PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase GAPDH domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284051; PFAM: Myo-inositol-1-phosphate synthase YP_004625597.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839:IPR019881; KEGG: tal:Thal_1518 LL-diaminopimelate aminotransferase; PFAM: aminotransferase class I and II; SPTR: LL-diaminopimelate aminotransferase; TIGRFAM: LL-diaminopimelate aminotransferase; IMG reference gene:2505284052; PFAM: Aminotransferase class I and II; TIGRFAM: LL-diaminopimelate aminotransferase YP_004625598.1 COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: ttj:TTHA1749 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (FolK); PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropte ridinepyrophosphokinase; manually curated; IMG reference gene:2505284053; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_004625599.1 InterPro IPR007029:IPR011017; KEGG: pca:Pcar_0249 hypothetical protein; PFAM: YHS domain-containing protein; SMART: TRASH domain-containing protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284054; PFAM: YHS domain YP_004625600.1 COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258:IPR000189; KEGG: nde:NIDE3738 putative lytic murein transglycosylase; PFAM: Lytic transglycosylase catalytic; SPTR: Lytic transglycosylase, catalytic; IMG reference gene:2505284055; PFAM: Transglycosylase SLT domain YP_004625601.1 KEGG: bav:BAV0393 hypothetical protein; SPTR: Putative phage-related protein; IMG reference gene:2505284056 YP_004625602.1 COGs: COG1469 conserved hypothetical protein; InterPro IPR003801; KEGG: pca:Pcar_2981 putative GTP cyclohydrolase; PFAM: protein of unknown function DUF198; PRIAM: GTP cyclohydrolase I; SPTR: Putative uncharacterized protein; IMG reference gene:2505284057; PFAM: Uncharacterized ACR, COG1469; TIGRFAM: TIGR00294 family protein YP_004625603.1 COGs: COG3640 CO dehydrogenase maturation factor; InterPro IPR014433; KEGG: dak:DaAHT2_0979 cobyrinic acid ac-diamide synthase; SPTR: Cobyrinic acid a,c-diamide synthase; IMG reference gene:2505284058; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004625604.1 COGs: COG0442 Prolyl-tRNA synthetase; InterProIPR006195:IPR002314:IPR007214:IPR004154:IPR 002316:IPR004500; KEGG: gur:Gura_2798 prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein; SPTR: Prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; IMG reference gene:2505284059; PFAM: YbaK / prolyl-tRNA synthetases associated domain; Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II YP_004625605.1 COGs: COG1189 rRNA methylase; InterPro IPR002942:IPR002877:IPR004538; KEGG: gme:Gmet_1222 hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Hemolysin A; TIGRFAM: hemolysin A; IMG reference gene:2505284060; PFAM: S4 domain; FtsJ-like methyltransferase; TIGRFAM: hemolysin TlyA family protein YP_004625606.1 COGs: COG0517 FOG: CBS domain; InterPro IPR000644; KEGG: dvl:Dvul_0535 CBS domain-containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: CBS domain protein/ACT domain protein; IMG reference gene:2505284061; PFAM: CBS domain YP_004625607.1 COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264:IPR001460:IPR011816; KEGG: dak:DaAHT2_0246 penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; IMG reference gene:2505284062; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family YP_004625608.1 COGs: COG3044 ATPase of the ABC class; InterPro IPR019195; KEGG: cyh:Cyan8802_2553 ATPase family protein; PFAM: ABC transporter, ATPase, predicted; SPTR: ATPase family protein; IMG reference gene:2505284063; PFAM: Predicted ATPase of the ABC class YP_004625609.1 KEGG: dde:Dde_1000 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284064 YP_004625610.1 COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); InterPro IPR002813; KEGG: dal:Dalk_1420 arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; PRIAM: Amino-acid N-acetyltransferase; SPTR: Arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; IMG reference gene:2505284065; PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase YP_004625611.1 KEGG: dat:HRM2_46870 metal-binding protein; SPTR: Metal-binding protein; IMG reference gene:2505284066 YP_004625612.1 COGs: COG0496 acid phosphatase; InterPro IPR002828; KEGG: sfu:Sfum_1169 stationary-phase survival protein SurE; PFAM: Survival protein SurE; SPTR: 5'-nucleotidase surE; TIGRFAM: stationary-phase survival protein SurE; IMG reference gene:2505284067; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE YP_004625613.1 KEGG: sii:LD85_2436 helix-turn-helix, type 11 domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284068 YP_004625614.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR017200:IPR007197:IPR006638; KEGG: sfu:Sfum_3058 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; IMG reference gene:2505284069; PFAM: Radical SAM superfamily; TIGRFAM: putative heme d1 biosynthesis radical SAM protein NirJ2; radical SAM additional 4Fe4S-binding domain YP_004625615.1 KEGG: sto:ST2336 hypothetical protein; SPTR: Putative uncharacterized protein ST2336; IMG reference gene:2505284070 YP_004625616.1 COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803:IPR015273:IPR002308; KEGG: sfu:Sfum_1634 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; manually curated; IMG reference gene:2505284071; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase YP_004625617.1 InterPro IPR003825; KEGG: dat:HRM2_35760 putative colicin V production protein-like protein; PFAM: Colicin V production protein; SPTR: Putative colicin V production protein-like protein; IMG reference gene:2505284072; PFAM: Colicin V production protein YP_004625618.1 COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR004518:IPR011551; KEGG: gsu:GSU1174 nucleoside triphosphate pyrophosphohydrolase; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: MazG protein; TIGRFAM: MazG family protein; IMG reference gene:2505284073; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein YP_004625619.1 COGs: COG1423 ATP-dependent DNA ligase homolog of eukaryotic ligase III; InterPro IPR012310:IPR001072; KEGG: tal:Thal_0814 ATP dependent DNA ligase; PFAM: ATP dependent DNA ligase; SPTR: Putative uncharacterized protein; IMG reference gene:2505284074; PFAM: ATP dependent DNA ligase domain; TIGRFAM: RNA ligase, Pab1020 family YP_004625620.1 COGs: COG0430 RNA 3'-terminal phosphate cyclase; InterPro IPR000228:IPR013796:IPR017770; KEGG: gur:Gura_1665 RNA-3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-terminal phosphate cyclase insert region; PRIAM: RNA-3'-phosphate cyclase; SPTR: Probable RNA 3'-terminal phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase; IMG reference gene:2505284075; PFAM: RNA 3'-terminal phosphate cyclase (RTC), insert domain; RNA 3'-terminal phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase YP_004625621.1 COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterProIPR003439:IPR013563:IPR003593:IPR017871:IPR 010066; KEGG: tle:Tlet_0198 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; IMG reference gene:2505284076; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004625622.1 IMG reference gene:2505284077 YP_004625623.1 KEGG: sul:SYO3AOP1_1224 transposase IS116/IS110/IS902 family protein; SPTR: Putative transposase; manually curated; IMG reference gene:2505284078; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004625624.1 KEGG: ddf:DEFDS_0396 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284079; PFAM: PIN domain YP_004625625.1 InterPro IPR007159:IPR006339; KEGG: ddf:DEFDS_0395 hypothetical protein; PFAM: SpoVT/AbrB domain-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: transcriptional regulator, AbrB family; IMG reference gene:2505284080; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family YP_004625626.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR003439:IPR013563:IPR003593:IPR017871:IPR 010066; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: Oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; IMG reference gene:2505284081; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004625627.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: ddf:DEFDS_0217 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; IMG reference gene:2505284082; PFAM: Rhomboid family YP_004625628.1 COGs: COG0616 Periplasmic serine protease (ClpP class); KEGG: ddf:DEFDS_0218 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284083; PFAM: Serine dehydrogenase proteinase YP_004625629.1 InterPro IPR008910; KEGG: par:Psyc_2091 hypothetical protein; PFAM: Conserved TM helix repeat-containing protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284084; PFAM: Conserved TM helix YP_004625630.1 COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: ilo:IL0821 FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2505284085; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_004625631.1 KEGG: sat:SYN_01416 putative cytoplasmic protein; SPTR: Hypothetical cytosolic protein; IMG reference gene:2505284086 YP_004625632.1 COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR015178:IPR004300:IPR015179; KEGG: tsi:TSIB_0455 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1925; Domain of unknown function DUF1926; PRIAM: 4-alpha-glucanotransferase; SPTR: Cyclodextrin glucanotransferase; IMG reference gene:2505284087; PFAM: Domain of unknown function (DUF1925); Glycosyl hydrolase family 57; Domain of unknown function (DUF1926) YP_004625633.1 COGs: COG0379 Quinolinate synthase; InterPro IPR003473; KEGG: gur:Gura_0199 quinolinate synthetase; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthase A; TIGRFAM: quinolinate synthetase complex, A subunit; IMG reference gene:2505284088; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit YP_004625634.1 COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR018323:IPR004564; KEGG: dak:DaAHT2_0277 outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; SPTR: Outer membrane lipoprotein carrier protein LolA; TIGRFAM: outer membrane lipoprotein carrier protein LolA; IMG reference gene:2505284089; PFAM: Outer membrane lipoprotein carrier protein LolA; TIGRFAM: periplasmic chaperone LolA YP_004625635.1 COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541:IPR003593; KEGG: dal:Dalk_3204 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; SPTR: Cell divisionFtsK/SpoIIIE; IMG reference gene:2505284090; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; EAP30/Vps36 family YP_004625636.1 KEGG: rpe:RPE_2580 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284091 YP_004625637.1 COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: pth:PTH_1159 Zn-dependent protease; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Predicted Zn-dependent protease and their inactivated homologs; IMG reference gene:2505284092; PFAM: Putative modulator of DNA gyrase YP_004625638.1 COGs: COG2524 transcriptional regulator protein; InterPro IPR000644; KEGG: mbu:Mbur_1884 CBS domain-containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284093; PFAM: CBS domain YP_004625639.1 KEGG: gsu:GSU1874 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284094 YP_004625640.1 COGs: COG0105 Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: dvl:Dvul_0925 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase; PRIAM: Nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase; SPTR: Nucleoside diphosphate kinase; IMG reference gene:2505284095; PFAM: Nucleoside diphosphate kinase YP_004625641.1 COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR006283:IPR000728:IPR010918; KEGG: dak:DaAHT2_1499 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; IMG reference gene:2505284096; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase YP_004625642.1 COGs: COG1542 conserved hypothetical protein; InterPro IPR007548; KEGG: ttr:Tter_1487 protein of unknown function DUF505; PFAM: protein of unknown function DUF505; SPTR: Putative uncharacterized protein; IMG reference gene:2505284097; PFAM: Protein of unknown function (DUF505) YP_004625643.1 KEGG: aae:aq_755 hypothetical protein; SPTR: Uncharacterized protein aq_755; IMG reference gene:2505284098 YP_004625644.1 InterPro IPR003115:IPR013838; KEGG: aae:aq_324 hypothetical protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: Putative uncharacterized protein; IMG reference gene:2505284099; PFAM: ParB-like nuclease domain YP_004625645.1 COGs: COG1355 dioxygenase; InterPro IPR002737; KEGG: sfu:Sfum_0075 hypothetical protein; PFAM: protein of unknown function DUF52; SPTR: Putative uncharacterized protein; IMG reference gene:2505284100; PFAM: Memo-like protein YP_004625646.1 COGs: COG1150 Heterodisulfide reductase subunit C; InterPro IPR017896:IPR017900; KEGG: slp:Slip_2075 4Fe-4S ferredoxin, iron-sulfur binding protein; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding protein; manually curated; IMG reference gene:2505284101 YP_004625647.1 COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: drm:Dred_1326 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284102; PFAM: Cysteine-rich domain YP_004625648.1 COGs: COG1452 Organic solvent tolerance protein OstA; InterPro IPR007543; KEGG: drt:Dret_1088 organic solvent tolerance protein; PFAM: Organic solvent tolerance protein; SPTR: Organic solvent tolerance protein; IMG reference gene:2505284103; PFAM: Organic solvent tolerance protein YP_004625649.1 COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; InterPro IPR000182; KEGG: aae:aq_1359 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Putative uncharacterized protein; IMG reference gene:2505284104; PFAM: Acetyltransferase (GNAT) family YP_004625650.1 InterPro IPR007730; KEGG: pca:Pcar_0743 hypothetical protein; PFAM: Sporulation domain-containing protein; SPTR: Sporulation domain protein; IMG reference gene:2505284105; PFAM: Sporulation related domain YP_004625651.1 COGs: COG0018 Arginyl-tRNA synthetase; InterProIPR001278:IPR005148:IPR015945:IPR008909:IPR 001412; KEGG: pca:Pcar_0742 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; DALR anticodon binding domain protein; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; IMG reference gene:2505284106; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase YP_004625652.1 KEGG: ppd:Ppro_1020 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284107 YP_004625653.1 InterPro IPR019300; KEGG: dal:Dalk_3711 hypothetical protein; PFAM: RNA-binding protein, predicted; SPTR: Putative uncharacterized protein; IMG reference gene:2505284108; PFAM: Predicted RNA-binding protein YP_004625654.1 KEGG: wri:WRi_003880 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284109 YP_004625655.1 KEGG: dde:Dde_2292 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284110 YP_004625656.1 COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); InterProIPR020599:IPR011768:IPR013185:IPR001059:IPR 015365:IPR013852; KEGG: tye:THEYE_A0400 translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein; SPTR: Elongation factor P; TIGRFAM: translation elongation factor P; IMG reference gene:2505284111; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P YP_004625657.1 InterPro IPR007060; KEGG: dak:DaAHT2_0632 septum formation initiator; PFAM: Septum formation initiator; SPTR: Septum formation initiator; IMG reference gene:2505284112; PFAM: Septum formation initiator YP_004625658.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR007127:IPR009042:IPR007627:IPR007624:IPR 007630:IPR000943:IPR014284; KEGG: dak:DaAHT2_1066 RNA polymerase, sigma 70 subunit, RpoD subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; SPTR: RNA polymerase, sigma 70 subunit, RpoD subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; IMG reference gene:2505284113; PFAM: Sigma-70, region 4; Sigma-70 factor, region 1.1; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004625659.1 InterPro IPR002745; KEGG: dol:Dole_1544 phosphotransferase KptA/Tpt1; PFAM: phosphotransferase KptA/Tpt1; SPTR: Phosphotransferase KptA/Tpt1; IMG reference gene:2505284114; PFAM: RNA 2'-phosphotransferase, Tpt1 / KptA family YP_004625660.1 COGs: COG0133 Tryptophan synthase beta chain; InterPro IPR001926:IPR006653:IPR006654; KEGG: ppd:Ppro_1291 tryptophan synthase subunit beta; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Tryptophan synthase, beta chain; TIGRFAM: tryptophan synthase, beta subunit; IMG reference gene:2505284115; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit YP_004625661.1 COGs: COG0159 Tryptophan synthase alpha chain; InterPro IPR002028:IPR018204; KEGG: dae:Dtox_0911 tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; IMG reference gene:2505284116; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit YP_004625662.1 COGs: COG1565 conserved hypothetical protein; InterPro IPR003788; KEGG: cyp:PCC8801_3820 protein of unknown function DUF185; PFAM: protein of unknown function DUF185; SPTR: Putative uncharacterized protein; IMG reference gene:2505284117; PFAM: Uncharacterized ACR, COG1565 YP_004625663.1 COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR004803:IPR002616; KEGG: pca:Pcar_1894 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; IMG reference gene:2505284118; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming YP_004625664.1 COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: gsu:GSU2618 preprotein translocase, YajC subunit; PFAM: YajC family protein; SPTR: Preprotein translocase, YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; IMG reference gene:2505284119; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit YP_004625665.1 COGs: COG1492 Cobyric acid synthase; InterPro IPR017929:IPR011698:IPR004459; KEGG: pfu:PF0301 cobyric acid synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; SPTR: Cobyric acid synthase CobQ; TIGRFAM: cobyric acid synthase CobQ; IMG reference gene:2505284120; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyric acid synthase CobQ YP_004625666.1 COGs: COG2230 Cyclopropane fatty acid synthase and related methyltransferase; InterPro IPR003333; KEGG: gur:Gura_1633 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; SPTR: Cyclopropane-fatty-acyl-phospholipid synthase; IMG reference gene:2505284121; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_004625667.1 KEGG: tna:CTN_1090 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284122 YP_004625668.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: afu:AF1615 cofactor modifying protein (cmo); PFAM: Radical SAM domain protein; SPTR: Cofactor modifying protein (Cmo); IMG reference gene:2505284123; PFAM: Radical SAM superfamily YP_004625669.1 SPTR: Transferase; IMG reference gene:2505284130 YP_004625670.1 COGs: COG1294 Cytochrome bd-type quinol oxidase subunit 2; InterPro IPR003317; KEGG: dal:Dalk_2358 cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; SPTR: Cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; IMG reference gene:2505284131; PFAM: Cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB) YP_004625671.1 COGs: COG1271 Cytochrome bd-type quinol oxidase subunit 1; InterPro IPR002585; KEGG: dvl:Dvul_0118 cytochrome bd ubiquinol oxidase, subunit I; PFAM: cytochrome bd ubiquinol oxidase subunit I; SPTR: Cytochrome bd ubiquinol oxidase, subunit I; IMG reference gene:2505284132; PFAM: Bacterial Cytochrome Ubiquinol Oxidase YP_004625672.1 COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: dma:DMR_28290 putative Rrf2 family DNA binding protein; PFAM: protein of unknown function UPF0074; SPTR: Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; IMG reference gene:2505284133; PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein YP_004625673.1 COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; KEGG: adg:Adeg_0900 formyl transferase domain protein; SPTR: Formyl transferase domain protein; IMG reference gene:2505284134; PFAM: Formyl transferase YP_004625674.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: dat:HRM2_45660 putative histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; PFAM: aminotransferase class I and II; SPTR: Putative histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; IMG reference gene:2505284135; PFAM: Aminotransferase class I and II YP_004625675.1 COGs: COG2045 Phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: tna:CTN_1781 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulfolactate phosphatase; PRIAM: 2-phosphosulfolactate phosphatase; SPTR: 2-phosphosulfolactate phosphatase; IMG reference gene:2505284136; PFAM: 2-phosphosulpholactate phosphatase; TIGRFAM: 2-phosphosulfolactate phosphatase YP_004625676.1 COGs: COG0171 NAD synthase; InterPro IPR014445:IPR003010:IPR000132:IPR003694; KEGG: dal:Dalk_2633 NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: NAD+ synthetase; TIGRFAM: NAD+ synthetase; IMG reference gene:2505284137; PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase YP_004625677.1 InterPro IPR003675:IPR014346; KEGG: ppd:Ppro_2431 abortive infection protein; PFAM: Abortive infection protein; SPTR: Abortive infection protein; TIGRFAM: CAAX prenyl protease-related protein; IMG reference gene:2505284138; PFAM: CAAX amino terminal protease family; TIGRFAM: CAAX prenyl protease-related protein YP_004625678.1 COGs: COG2109 ATP:corrinoid adenosyltransferase; InterPro IPR003724; KEGG: aps:CFPG_329 cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; SPTR: Cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; IMG reference gene:2505284139; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase YP_004625679.1 KEGG: ckr:CKR_1638 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284140 YP_004625680.1 COGs: COG0504 CTP synthase (UTP-ammonia lyase); InterPro IPR004468:IPR017926:IPR017456:IPR000991; KEGG: dak:DaAHT2_1327 CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; IMG reference gene:2505284141; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase YP_004625681.1 COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR003682; KEGG: dps:DP1283 glucose inhibited division protein B; PFAM: glucose inhibited division protein; SPTR: Ribosomal RNA small subunit methyltransferase G; IMG reference gene:2505284142; PFAM: rRNA small subunit methyltransferase G YP_004625682.1 COGs: COG1066 ATP-dependent serine protease; InterPro IPR007694:IPR003593:IPR004504; KEGG: sth:STH3128 DNA repair protein RadA; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; IMG reference gene:2505284143; PFAM: KaiC; TIGRFAM: DNA repair protein RadA YP_004625683.1 InterPro IPR003735; KEGG: cpb:Cphamn1_0277 protein of unknown function DUF156; PFAM: protein of unknown function DUF156; SPTR: Putative uncharacterized protein; IMG reference gene:2505284144; PFAM: Uncharacterised BCR, COG1937 YP_004625684.1 COGs: COG0348 Polyferredoxin; InterPro IPR017896:IPR017900; KEGG: gsu:GSU0729 iron-sulfur cluster-binding protein; SPTR: Iron-sulfur cluster-binding protein; IMG reference gene:2505284145 YP_004625685.1 COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterProIPR017926:IPR000991:IPR006220:IPR011702:IPR 001317:IPR006221; KEGG: dak:DaAHT2_0448 glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; SPTR: Glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; IMG reference gene:2505284146; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_004625686.1 COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805:IPR015890:IPR019999:IPR005256; KEGG: gsu:GSU2383 anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; IMG reference gene:2505284147; PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme; TIGRFAM: anthranilate synthase component I, non-proteobacterial lineages YP_004625687.1 COGs: COG0558 Phosphatidylglycerophosphate synthase; InterPro IPR004570:IPR000462; KEGG: sat:SYN_01716 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; IMG reference gene:2505284148; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_004625688.1 InterPro IPR011449:IPR013424; KEGG: app:CAP2UW1_0463 hypothetical protein; PFAM: protein of unknown function DUF1555; SPTR: Putative uncharacterized protein; IMG reference gene:2505284149; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM putative exosortase interaction domain YP_004625689.1 COGs: COG1522 Transcriptional regulators; InterPro IPR019888; KEGG: sfu:Sfum_4037 AsnC family transcriptional regulator; SMART: Transcription regulator AsnC-type; SPTR: Transcriptional regulator, AsnC family; IMG reference gene:2505284150 YP_004625690.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143:IPR003997; KEGG: aae:aq_1060 hypothetical protein; PFAM: secretion protein HlyD family protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284151; PFAM: HlyD family secretion protein YP_004625691.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR004638; KEGG: ddf:DEFDS_0617 multidrug-efflux transporter MFS family; PFAM: major facilitator superfamily MFS_1; SPTR: Multidrug-efflux transporter, MFS family; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; IMG reference gene:2505284152; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_004625692.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sat:SYN_01010 type I secretion outer membrane protein; PFAM: outer membrane efflux protein; SPTR: Type I secretion outer membrane protein; IMG reference gene:2505284153; PFAM: Outer membrane efflux protein YP_004625693.1 COGs: COG2078 conserved hypothetical protein; InterPro IPR002733; KEGG: sfu:Sfum_1996 AMMECR1 domain-containing protein; PFAM: AMMECR1 domain protein; SPTR: AMMECR1 domain protein; IMG reference gene:2505284154; PFAM: AMMECR1; TIGRFAM: uncharacterized protein, PH0010 family YP_004625694.1 InterPro IPR018950; KEGG: hth:HTH_1351 thiol:disulfide interchange protein; PFAM: Disulphide bond isomerase, DsbC/G-like; SPTR: Thiol:disulfide interchange protein; IMG reference gene:2505284155; PFAM: Disulfide bond isomerase protein N-terminus YP_004625695.1 COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192:IPR020578; KEGG: tna:CTN_1191 aspartate aminotransferase; PFAM: aminotransferase class V; SPTR: Serine--glyoxylate transaminase; IMG reference gene:2505284156; PFAM: Aminotransferase class-V YP_004625696.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140:IPR002912:IPR006236; KEGG: dak:DaAHT2_0597 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; PRIAM: Phosphoglycerate dehydrogenase; SPTR: D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; IMG reference gene:2505284157; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase YP_004625697.1 IMG reference gene:2505284158 YP_004625698.1 COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase and inactivated derivative; IMG reference gene:2505284159; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004625699.1 COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR019734:IPR013026:IPR001440:IPR003107; KEGG: dat:HRM2_20780 tetratricopeptide (TPR) domain protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide (TPR) domain protein; IMG reference gene:2505284160; PFAM: Tetratricopeptide repeat; PPR repeat YP_004625700.1 COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR004383:IPR007197; KEGG: dak:DaAHT2_0795 radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; SPTR: Radical SAM enzyme, Cfr family; TIGRFAM: radical SAM enzyme, Cfr family; IMG reference gene:2505284161; PFAM: Radical SAM superfamily; TIGRFAM: 23S rRNA m2A2503 methyltransferase YP_004625701.1 COGs: COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation; InterPro IPR004417:IPR002218; KEGG: adg:Adeg_0573 tRNA (uracil-5-)-methyltransferase Gid; PFAM: glucose-inhibited division protein A; PRIAM:Methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase(FADH(2)-oxidizing); SPTR:Methylenetetrahydrofolate--tRNA-(uracil-5-)-me thyltransferasetrmFO; TIGRFAM: gid protein; IMG reference gene:2505284162; PFAM: Glucose inhibited division protein A; TIGRFAM: tRNA:m(5)U-54 methyltransferase YP_004625702.1 KEGG: sth:STH1731 cytochrome c biogenesis protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284163 YP_004625703.1 COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR005215:IPR008881:IPR001179:IPR008880; KEGG: gem:GM21_3012 trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type; SPTR: Trigger factor; TIGRFAM: trigger factor; IMG reference gene:2505284164; PFAM: Bacterial trigger factor protein (TF) C-terminus; Bacterial trigger factor protein (TF); TIGRFAM: trigger factor YP_004625704.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907:IPR018215; KEGG: adg:Adeg_0489 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; IMG reference gene:2505284165; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP YP_004625705.1 COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterProIPR004487:IPR010603:IPR013093:IPR019489:IPR 003593; KEGG: sfu:Sfum_0099 ATP-dependent protease ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: ATP-dependent Clp protease ATP-binding subunit clpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; IMG reference gene:2505284166; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_004625706.1 COGs: COG0466 ATP-dependent Lon protease; InterProIPR003111:IPR003959:IPR003593:IPR001984:IPR 008268:IPR004815; KEGG: sfu:Sfum_0098 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; AAA ATPase; SPTR: Lon protease 1; TIGRFAM: ATP-dependent protease La; IMG reference gene:2505284167; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease; ATP-dependent protease La YP_004625707.1 COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: ant:Arnit_0792 hypothetical protein; PFAM: protein of unknown function DUF218; SPTR: Putative uncharacterized protein; IMG reference gene:2505284170; PFAM: DUF218 domain YP_004625708.1 COGs: COG0279 Phosphoheptose isomerase; InterPro IPR020620:IPR001347:IPR004515; KEGG: mvu:Metvu_0054 phosphoheptose isomerase; PFAM: sugar isomerase (SIS); SPTR: Phosphoheptose isomerase; TIGRFAM: phosphoheptose isomerase; IMG reference gene:2505284171; PFAM: SIS domain; TIGRFAM: phosphoheptose isomerase YP_004625709.1 KEGG: dat:HRM2_35930 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284172 YP_004625710.1 COGs: COG2164 conserved hypothetical protein; InterPro IPR007256; KEGG: tna:CTN_1224 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284173; PFAM: Domain of unknown function (DUF369) YP_004625711.1 InterPro IPR013429; KEGG: dol:Dole_3061 FmdB family regulatory protein; PFAM: Putative regulatory protein FmdB; SPTR: Putative regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; IMG reference gene:2505284174; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family YP_004625712.1 KEGG: dae:Dtox_0155 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284175 YP_004625713.1 COGs: COG0181 Porphobilinogen deaminase; InterPro IPR000860; KEGG: dak:DaAHT2_0535 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; PRIAM: Hydroxymethylbilane synthase; SPTR: Porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; IMG reference gene:2505284176; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase YP_004625714.1 COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR000878:IPR003754:IPR003043:IPR006366; KEGG: dal:Dalk_4009 uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; SPTR: Uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; IMG reference gene:2505284177; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase YP_004625715.1 KEGG: kol:Kole_1147 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284178; PFAM: Predicted permease YP_004625716.1 KEGG: kol:Kole_1148 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284179; PFAM: Predicted permease YP_004625717.1 COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR016454:IPR000192:IPR020578; KEGG: geo:Geob_2507 aminotransferase class V; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: Aminotransferase class V; IMG reference gene:2505284180; PFAM: Aminotransferase class-V YP_004625718.1 InterPro IPR011701; KEGG: gbm:Gbem_1224 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; IMG reference gene:2505284181; PFAM: Bacterial protein of unknown function (DUF894) YP_004625719.1 COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: ddf:DEFDS_0585 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: Putative uncharacterized protein; IMG reference gene:2505284182; PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein YP_004625720.1 COGs: COG1381 Recombinational DNA repair protein (RecF pathway); InterPro IPR003717; KEGG: cdl:CDR20291_2327 DNA repair protein; PFAM: Recombination protein O RecO; SPTR: Recombination protein O, RecO; TIGRFAM: DNA repair protein RecO; IMG reference gene:2505284183; PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO YP_004625721.1 COGs: COG1426 conserved hypothetical protein; KEGG: tte:TTE1826 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284184 YP_004625722.1 InterPro IPR000297:IPR015391; KEGG: dat:HRM2_28180 PpiD2; PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: PpiD2; IMG reference gene:2505284185; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain YP_004625723.1 COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR014021:IPR001650:IPR003711:IPR011545:IPR 005118:IPR014001:IPR004576; KEGG: gem:GM21_0197 transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: Transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; IMG reference gene:2505284186; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd) YP_004625724.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160:IPR013976; KEGG: ppd:Ppro_3373 diguanylate cyclase; PFAM: GGDEF domain containing protein; Metal-dependent hydrolase HDOD; SMART: GGDEF domain containing protein; SPTR: Diguanylate cyclase; TIGRFAM: diguanylate cyclase; IMG reference gene:2505284187; PFAM: GGDEF domain; HDOD domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004625725.1 COGs: COG0211 Ribosomal protein L27; InterPro IPR001684:IPR018261; KEGG: pmx:PERMA_0052 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; IMG reference gene:2505284188; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27 YP_004625726.1 COGs: COG0261 Ribosomal protein L21; InterPro IPR001787:IPR018258; KEGG: dps:DP2592 50S ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; IMG reference gene:2505284189; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21 YP_004625727.1 COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterPro IPR007197:IPR006638:IPR000385; KEGG: afu:AF2104 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; IMG reference gene:2505284190; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_004625728.1 COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835:IPR001538:IPR006375; KEGG: saf:SULAZ_0358 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; PRIAM: Mannose-6-phosphate isomerase; SPTR: Strongly similar to GDP-mannose pyrophosphorylase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; IMG reference gene:2505284191; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_004625729.1 COGs: COG0205 6-phosphofructokinase; InterPro IPR012004:IPR000023; KEGG: dol:Dole_2111 diphosphate--fructose-6-phosphate 1-phosphotransferase; PFAM: phosphofructokinase; SPTR: Diphosphate--fructose-6-phosphate 1-phosphotransferase; IMG reference gene:2505284192; PFAM: Phosphofructokinase YP_004625730.1 COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR001509:IPR013549:IPR010099; KEGG: dak:DaAHT2_0933 domain of unknown function DUF1731; PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; SPTR: Putative uncharacterized protein; IMG reference gene:2505284193; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: TIGR01777 family protein YP_004625731.1 COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR005467:IPR003661:IPR003594; KEGG: dak:DaAHT2_1963 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: Multi-sensor signal transduction histidine kinase; IMG reference gene:2505284194; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004625732.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: sfu:Sfum_2126 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: Histidine triad (HIT) protein; IMG reference gene:2505284195; PFAM: HIT domain YP_004625733.1 COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein; InterPro IPR016431:IPR007197; KEGG: dtu:Dtur_1225 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; manually curated; IMG reference gene:2505284196; PFAM: Radical SAM superfamily YP_004625734.1 COGs: COG2920 Dissimilatory sulfite reductase (desulfoviridin) gamma subunit; InterPro IPR007453; KEGG: dak:DaAHT2_2041 sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; PRIAM: Hydrogensulfite reductase; SPTR: Dissimilatory sulfite reductase subunit C; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; IMG reference gene:2505284197; PFAM: DsrC like protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family YP_004625735.1 KEGG: gsu:GSU2199 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284198; PFAM: Protein of unknown function (DUF3373) YP_004625736.1 COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: tbd:Tbd_2203 radical activating enzyme; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; IMG reference gene:2505284199; PFAM: Radical SAM superfamily; TIGRFAM: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE YP_004625737.1 COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: sfu:Sfum_0003 putative 6-pyruvoyl tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284200; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein YP_004625738.1 COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR000728:IPR010918; KEGG: sat:SYN_00521 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase II; IMG reference gene:2505284203; PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II YP_004625739.1 KEGG: dvi:Dvir_GJ22664 GJ22664 gene product from transcript GJ22664-RA; SPTR: GJ22664; IMG reference gene:2505284204 YP_004625740.1 COGs: COG2956 N-acetylglucosaminyl transferase; InterPro IPR019734:IPR013026:IPR001440:IPR003107; KEGG: pmx:PERMA_0503 tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat:Tetratricopeptide TPR_4; IMG reference gene:2505284205; PFAM: Coatomer epsilon subunit; Tetratricopeptide repeat YP_004625741.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR009042:IPR007627:IPR007630:IPR000943:IPR 014284; KEGG: dal:Dalk_0134 putative RNA polymerase, sigma 70 family subunit; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; IMG reference gene:2505284206; PFAM: Sigma-70, region 4; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; alternative sigma factor RpoH YP_004625742.1 COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; InterPro IPR004416:IPR002218:IPR013027:IPR020595; KEGG: dps:DP0852 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: glucose-inhibited division protein A; SPTR: Glucose-inhibited division protein A subfamily; TIGRFAM: glucose inhibited division protein A; IMG reference gene:2505284207; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A YP_004625743.1 KEGG: tcx:Tcr_0574 methyl-accepting chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis sensory transducer; IMG reference gene:2505284208 YP_004625744.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR002550:IPR005170; KEGG: app:CAP2UW1_1016 protein of unknown function DUF21; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284209; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain YP_004625745.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR002550:IPR005170; KEGG: pmx:PERMA_1603 CBS/transporter-associated domain protein; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SPTR: CBS/transporter-associated domain protein; IMG reference gene:2505284210; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain YP_004625746.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: pmx:PERMA_1745 membrane protein; PFAM: protein of unknown function UPF0118; SPTR: Membrane protein; IMG reference gene:2505284211; PFAM: Domain of unknown function DUF20 YP_004625747.1 COGs: COG0266 Formamidopyrimidine-DNA glycosylase; InterProIPR020629:IPR000214:IPR012319:IPR015886:IPR 000191; KEGG: dau:Daud_1404 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; PRIAM: DNA-formamidopyrimidine glycosylase; SPTR: Formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; IMG reference gene:2505284212; PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg) YP_004625748.1 COGs: COG0525 Valyl-tRNA synthetase; InterProIPR002300:IPR013155:IPR019499:IPR019754:IPR 001412:IPR002303; KEGG: dak:DaAHT2_1051 valyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; SPTR: Valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; IMG reference gene:2505284213; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase YP_004625749.1 COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: cyc:PCC7424_1274 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2505284215; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_004625750.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR001789:IPR000014:IPR003594:IPR 004358; KEGG: cts:Ctha_2235 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator receiver; SPTR: PAS/PAC sensor hybrid histidine kinase; IMG reference gene:2505284216; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain YP_004625751.1 COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase and inactivated derivative; IMG reference gene:2505284217; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004625752.1 IMG reference gene:2505284218 YP_004625753.1 COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: dar:Daro_1602 protein kinase:GAF; PFAM: Metal-dependent hydrolase HDOD; SPTR: Protein kinase:GAF; IMG reference gene:2505284220; PFAM: HDOD domain YP_004625754.1 COGs: COG1267 Phosphatidylglycerophosphatase A and related protein; InterPro IPR007686; KEGG: maq:Maqu_0848 phosphatidylglycerophosphatase; PFAM: phosphatidylglycerophosphatase A; SPTR: Phosphatidylglycerophosphatase; IMG reference gene:2505284221; PFAM: Phosphatidylglycerophosphatase A YP_004625755.1 COGs: COG1683 conserved hypothetical protein; InterPro IPR007553; KEGG: dps:DP1762 hypothetical protein; PFAM: protein of unknown function DUF523; SPTR: Putative uncharacterized protein; IMG reference gene:2505284222; PFAM: Protein of unknown function (DUF523) YP_004625756.1 COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR000728:IPR010918:IPR004733; KEGG: dak:DaAHT2_1081 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; IMG reference gene:2505284223; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase YP_004625757.1 COGs: COG0070 Glutamate synthase domain 3; InterPro IPR017441:IPR002489:IPR012061; KEGG: dsa:Desal_1634 glutamate synthase alpha subunit domain protein; PFAM: glutamate synthase alpha subunit domain protein; SPTR: Glutamate synthase alpha subunit domain protein; IMG reference gene:2505284224; PFAM: GXGXG motif YP_004625758.1 COGs: COG0067 Glutamate synthase domain 1; InterPro IPR000583:IPR017932; KEGG: geo:Geob_3276 glutamine amidotransferase class-II; PFAM: glutamine amidotransferase class-II; SPTR: Glutamine amidotransferase class-II; IMG reference gene:2505284225; PFAM: Glutamine amidotransferases class-II YP_004625759.1 COGs: COG0069 Glutamate synthase domain 2; InterPro IPR017900:IPR002932:IPR017896; KEGG: dde:Dde_1814 glutamate synthase (NADPH) GltB2 subunit; PFAM: ferredoxin-dependent glutamate synthase; PRIAM: Glutamate synthase (NADPH); SPTR: Glutamate synthase (NADPH) GltB2 subunit; IMG reference gene:2505284226; PFAM: 4Fe-4S binding domain; Conserved region in glutamate synthase YP_004625760.1 COGs: COG0061 sugar kinase; InterPro IPR002504; KEGG: geo:Geob_3461 ATP-NAD/AcoX kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase; IMG reference gene:2505284227; PFAM: ATP-NAD kinase YP_004625761.1 KEGG: tye:THEYE_A1391 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284228 YP_004625762.1 COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: chy:CHY_1063 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033563; SPTR: Putative uncharacterized protein; IMG reference gene:2505284230; PFAM: Protein of unknown function (DUF1015) YP_004625763.1 KEGG: apo:Arcpr_0951 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284231 YP_004625764.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterProIPR016131:IPR004089:IPR004090:IPR003660:IPR 012312:IPR012827; KEGG: mgm:Mmc1_0310 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Hemerythrin HHE cation binding domain protein; SMART: chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis sensory transducer; TIGRFAM: hemerythrin-like metal-binding protein; IMG reference gene:2505284232; PFAM: Hemerythrin HHE cation binding domain; Methyl-accepting chemotaxis protein (MCP) signaling domain; TIGRFAM: hemerythrin-like metal-binding domain YP_004625765.1 InterPro IPR002482:IPR008258:IPR018392; KEGG: dal:Dalk_1929 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SPTR: Lytic transglycosylase catalytic; IMG reference gene:2505284233; PFAM: Transglycosylase SLT domain; LysM domain YP_004625766.1 COGs: COG1525 Micrococcal nuclease (thermonuclease) homologs; InterPro IPR006021; KEGG: dal:Dalk_0740 nuclease (SNase domain protein); PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); SPTR: Nuclease (SNase domain protein); IMG reference gene:2505284235; PFAM: Staphylococcal nuclease homologue YP_004625767.1 COGs: COG0077 Prephenate dehydratase; InterProIPR018528:IPR020822:IPR001086:IPR002912:IPR 008242:IPR002701; KEGG: dak:DaAHT2_0619 prephenate dehydratase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; PRIAM: Prephenate dehydratase; SPTR: Prephenate dehydratase:Chorismate mutase:Amino acid-binding ACT; IMG reference gene:2505284236; PFAM: Prephenate dehydratase; ACT domain; Chorismate mutase type II YP_004625768.1 KEGG: dal:Dalk_0095 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284237 YP_004625769.1 COGs: COG2331 conserved hypothetical protein; InterPro IPR013429; KEGG: dal:Dalk_4244 regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; SPTR: Regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; IMG reference gene:2505284238; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family YP_004625770.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR006036:IPR003148:IPR006037; KEGG: dba:Dbac_0339 TrkA-N domain protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: TrkA-N domain protein; IMG reference gene:2505284239; PFAM: TrkA-N domain; TrkA-C domain YP_004625771.1 COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: sat:SYN_01091 potassium uptake protein; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: K+ transporter Trk; IMG reference gene:2505284240; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family YP_004625772.1 COGs: COG0531 Amino acid transporter; InterPro IPR004841:IPR002293; KEGG: nis:NIS_0790 amino acid transporter; PFAM: amino acid permease-associated region; SPTR: Amino acid transporter; IMG reference gene:2505284241; PFAM: Amino acid permease YP_004625773.1 COGs: COG0621 2-methylthioadenine synthetase; InterProIPR020612:IPR006638:IPR006463:IPR013848:IPR 007197:IPR002792:IPR005839; KEGG: dak:DaAHT2_0803 RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; IMG reference gene:2505284242; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; radical SAM methylthiotransferase, MiaB/RimO family YP_004625774.1 COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: sfu:Sfum_0418 hypothetical protein; PFAM: protein of unknown function DUF151; SPTR: Putative uncharacterized protein; IMG reference gene:2505284243; PFAM: Spumavirus aspartic protease (A9); Uncharacterised ACR, COG1259 YP_004625775.1 COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR003141:IPR004013; KEGG: dak:DaAHT2_0804 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: PHP domain protein; IMG reference gene:2505284244; PFAM: PHP domain YP_004625776.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212:IPR014016:IPR014017; KEGG: nde:NIDE1291 ATP-dependent DNA helicase; PFAM: UvrD/REP helicase; SPTR: UvrD/REP helicase; IMG reference gene:2505284245; PFAM: UvrD/REP helicase YP_004625777.1 COGs: COG0287 Prephenate dehydrogenase; InterPro IPR004455:IPR003099; KEGG: dal:Dalk_1765 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; SPTR: Prephenate dehydrogenase; IMG reference gene:2505284246; PFAM: Prephenate dehydrogenase YP_004625778.1 KEGG: chl:Chy400_3406 binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; IMG reference gene:2505284247 YP_004625779.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505284248 YP_004625780.1 COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterProIPR002078:IPR003018:IPR003593:IPR020441:IPR 002197; KEGG: dak:DaAHT2_1641 transcriptional regulator, NifA subfamily, fis family; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: GAF domain protein; AAA ATPase; SPTR: Transcriptional regulator, NifA subfamily, Fis Family; IMG reference gene:2505284249; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: Nif-specific regulatory protein YP_004625781.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646; KEGG: dak:DaAHT2_1536 polynucleotide adenylyltransferase; PFAM: Polynucleotide adenylyltransferase region; SPTR: Polynucleotide adenylyltransferase; IMG reference gene:2505284250; PFAM: Poly A polymerase head domain; TIGRFAM: poly(A) polymerase YP_004625782.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005833:IPR005834:IPR006328:IPR006388; KEGG: abi:Aboo_0736 haloacid dehalogenase, type II; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Haloacid dehalogenase, type II; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); IMG reference gene:2505284251; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase; 2-haloalkanoic acid dehalogenase, type II YP_004625783.1 KEGG: ngr:NAEGRDRAFT_72219 hypothetical protein; SPTR: Predicted protein; IMG reference gene:2505284252 YP_004625784.1 COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: det:DET1628 metallo-beta-lactamase family protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284253; PFAM: Metallo-beta-lactamase superfamily YP_004625785.1 COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR006118:IPR000836; KEGG: slp:Slip_0837 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; IMG reference gene:2505284254; PFAM: Phosphoribosyl transferase domain YP_004625786.1 COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143:IPR003142:IPR004408; KEGG: afl:Aflv_1125 biotin operon repressor containing HTH and biotin-(acetyl-CoA carboxylase) ligase domains; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; SPTR: Biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; IMG reference gene:2505284255; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region YP_004625787.1 COGs: COG0547 Anthranilate phosphoribosyltransferase; InterPro IPR005940:IPR017459:IPR000312; KEGG: dol:Dole_1567 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; IMG reference gene:2505284256; PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase YP_004625788.1 COGs: COG0012 GTPase probable translation factor; InterPro IPR006073:IPR013029:IPR004396; KEGG: dal:Dalk_1131 protein of unknown function DUF933; PFAM: protein of unknown function DUF933; SPTR: Putative uncharacterized protein; IMG reference gene:2505284257; PFAM: Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF YP_004625789.1 COGs: COG0621 2-methylthioadenine synthetase; InterProIPR020612:IPR006638:IPR013848:IPR007197:IPR 005839:IPR006467:IPR002792; KEGG: glo:Glov_2224 MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: MiaB-like tRNA modifying enzyme; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; IMG reference gene:2505284258; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; radical SAM methylthiotransferase, MiaB/RimO family YP_004625790.1 KEGG: ddf:DEFDS_0515 cardiolipin synthetase; SPTR: Putative uncharacterized protein; IMG reference gene:2505284259 YP_004625791.1 COGs: COG0177 EndoIII-related endonuclease; InterProIPR004035:IPR004036:IPR003265:IPR003651:IPR 005759; KEGG: dtu:Dtur_0683 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: Endonuclease III; TIGRFAM: endonuclease III; IMG reference gene:2505284260; PFAM: HhH-GPD superfamily base excision DNA repair protein; Iron-sulfur binding domain of endonuclease III; TIGRFAM: endonuclease III YP_004625792.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: abi:Aboo_0171 peptidase M20; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: Peptidase family M20/M25/M40; IMG reference gene:2505284262; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain YP_004625793.1 COGs: COG0456 Acetyltransferase; InterPro IPR000182; KEGG: adg:Adeg_1670 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; IMG reference gene:2505284263; PFAM: Acetyltransferase (GNAT) family YP_004625794.1 KEGG: nmr:Nmar_1084 metallophosphoesterase; SPTR: Putative uncharacterized protein; IMG reference gene:2505284264 YP_004625795.1 COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR016037:IPR002658:IPR016303; KEGG: dak:DaAHT2_0294 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; IMG reference gene:2505284265; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase YP_004625796.1 COGs: COG1280 Putative threonine efflux protein; InterPro IPR001123; KEGG: pfl:PFL_5120 amino acid transporter LysE; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Transporter, LysE family; IMG reference gene:2505284266; PFAM: LysE type translocator; TIGRFAM: The Resistance to Homoserine/Threonine (RhtB) Family protein YP_004625797.1 COGs: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain; InterPro IPR004646; KEGG: drm:Dred_1872 fumarate hydratase; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; PRIAM: Fumarate hydratase; SPTR: Fumarase alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; IMG reference gene:2505284267; PFAM: Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region YP_004625798.1 COGs: COG4087 Soluble P-type ATPase; KEGG: dvm:DvMF_1180 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284268; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004625799.1 COGs: COG0450 Peroxiredoxin; InterPro IPR000866:IPR019479:IPR017936; KEGG: dae:Dtox_2806 peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; SPTR: Peroxiredoxin; manually curated; selenocysteine-containing protein; IMG reference gene:2505284269; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family YP_004625800.1 COGs: COG1773 Rubredoxin; InterPro IPR018527:IPR001052:IPR004039; KEGG: pmo:Pmob_1630 rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; IMG reference gene:2505284270; PFAM: Rubredoxin YP_004625801.1 COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: sul:SYO3AOP1_1539 transposase mutator type; PFAM: transposase mutator type; SPTR: Transposase mutator type; IMG reference gene:2505284272; PFAM: Transposase, Mutator family YP_004625802.1 KEGG: smm:Smp_160620.1 subfamily M12B unassigned peptidase (M12 family); SPTR: Subfamily M12B unassigned peptidase (M12 family); IMG reference gene:2505284274 YP_004625803.1 COGs: COG1085 Galactose-1-phosphate uridylyltransferase; KEGG: sfu:Sfum_1834 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284275 YP_004625804.1 InterPro IPR000326; KEGG: pin:Ping_1712 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: Phosphoesterase, PA-phosphatase related; IMG reference gene:2505284276; PFAM: PAP2 superfamily YP_004625805.1 COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR001433:IPR019480:IPR012165:IPR017927; KEGG: gem:GM21_1819 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein; IMG reference gene:2505284277; PFAM: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain YP_004625806.1 COGs: COG0107 Imidazoleglycerol-phosphate synthase; InterProIPR010139:IPR000991:IPR006062:IPR014640:IPR 004651:IPR017926; KEGG: dps:DP2167 bifunctional histidine biosynthesis protein (HisHF); PFAM: histidine biosynthesis protein; glutamine amidotransferase class-I; SPTR: Related to bifunctional histidine biosynthesis protein (HisHF); TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IMG reference gene:2505284278; PFAM: Glutamine amidotransferase class-I; Histidine biosynthesis protein; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; imidazoleglycerol phosphate synthase, cyclase subunit YP_004625807.1 KEGG: tye:THEYE_A1521 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284279 YP_004625808.1 COGs: COG1038 Pyruvate carboxylase; InterPro IPR001882:IPR000891:IPR003379:IPR000089; KEGG: cts:Ctha_2637 oxaloacetate decarboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Conserved carboxylase region; pyruvate carboxyltransferase; PRIAM: Pyruvate carboxylase; SPTR: Oxaloacetate decarboxylase; IMG reference gene:2505284281; PFAM: HMGL-like; Biotin-requiring enzyme; Conserved carboxylase domain YP_004625809.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterProIPR005479:IPR005481:IPR005482:IPR011761:IPR 011764; KEGG: rca:Rcas_2955 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; SPTR: Carbamoyl-phosphate synthase L chain ATP-binding; IMG reference gene:2505284282; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain YP_004625810.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160:IPR001633:IPR003018; KEGG: rfr:Rfer_1825 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); TIGRFAM: diguanylate cyclase; IMG reference gene:2505284283; PFAM: EAL domain; GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004625811.1 COGs: COG4651 Kef-type K+ transport system predicted NAD-binding component; InterPro IPR006153:IPR003148; KEGG: dol:Dole_0855 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; SPTR: Sodium/hydrogen exchanger; IMG reference gene:2505284284; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family YP_004625812.1 COGs: COG3688 RNA-binding protein containing a PIN domain; InterPro IPR010298; KEGG: sat:SYN_01764 putative cytoplasmic protein; PFAM: protein of unknown function DUF901; SPTR: Hypothetical cytosolic protein; IMG reference gene:2505284285; PFAM: Protein of unknown function (DUF901) YP_004625813.1 COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: dak:DaAHT2_2007 ParB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: Putative uncharacterized protein; TIGRFAM: parB-like partition protein; IMG reference gene:2505284286; PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins YP_004625814.1 COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: ppd:Ppro_0583 cobyrinic acid a,c-diamide synthase; SPTR: Chromosome segregation ATPase; IMG reference gene:2505284287; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004625815.1 COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: tag:Tagg_1069 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; IMG reference gene:2505284288; PFAM: 5-formyltetrahydrofolate cyclo-ligase family YP_004625816.1 COGs: COG0797 Lipoprotein; InterPro IPR005132:IPR007730:IPR012997; KEGG: dak:DaAHT2_1328 rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein; SPTR: Rare lipoprotein A; TIGRFAM: rare lipoprotein A; IMG reference gene:2505284289; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Sporulation related domain; TIGRFAM: rare lipoprotein A YP_004625817.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR017871:IPR003593:IPR003439:IPR013563:IPR 010066; KEGG: apo:Arcpr_0085 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; IMG reference gene:2505284290; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004625818.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR017871:IPR003593:IPR003439:IPR013563:IPR 010066; KEGG: apo:Arcpr_0086 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; IMG reference gene:2505284291; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004625819.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: apo:Arcpr_0087 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; IMG reference gene:2505284292; PFAM: Binding-protein-dependent transport system inner membrane component YP_004625820.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: fpl:Ferp_1497 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; IMG reference gene:2505284293; PFAM: Binding-protein-dependent transport system inner membrane component YP_004625821.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: apo:Arcpr_0089 extracellular solute-binding protein family 5; PFAM: extracellular solute-binding protein family 5; SPTR: Extracellular solute-binding protein family 5; IMG reference gene:2505284294; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004625822.1 COGs: COG0571 dsRNA-specific ribonuclease; InterPro IPR000999:IPR001159:IPR011907; KEGG: sfu:Sfum_0876 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; PRIAM: Ribonuclease III; SMART: ribonuclease III; double-stranded RNA binding domain protein; SPTR: Ribonuclease 3; TIGRFAM: ribonuclease III; IMG reference gene:2505284295; PFAM: Double-stranded RNA binding motif; RNase3 domain; TIGRFAM: ribonuclease III, bacterial YP_004625823.1 COGs: COG1159 GTPase; InterProIPR005662:IPR006073:IPR002917:IPR004044:IPR 005225; KEGG: dps:DP1689 GTP-binding protein Era-like protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; SPTR: GTP-binding protein era homolog; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; IMG reference gene:2505284296; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain YP_004625824.1 COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; InterPro IPR004463; KEGG: mxa:MXAN_4967 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; SPTR: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; IMG reference gene:2505284297; PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase YP_004625825.1 COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR001453:IPR008136:IPR008135; KEGG: dps:DP2957 competence-damage inducible protein (CinA); PFAM: CinA domain protein; molybdopterin binding domain; SPTR: CinA-like protein; TIGRFAM: competence/damage-inducible protein CinA; IMG reference gene:2505284298; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain YP_004625826.1 COGs: COG1514 2'-5' RNA ligase; InterPro IPR014051:IPR004175; KEGG: sfu:Sfum_2529 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; SPTR: 2'-5' RNA ligase; TIGRFAM: 2'-5' RNA ligase; IMG reference gene:2505284299; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase YP_004625827.1 COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR002195:IPR006680:IPR004722; KEGG: gme:Gmet_1770 dihydroorotase; PFAM: amidohydrolase; SPTR: Dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; IMG reference gene:2505284300; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type YP_004625828.1 COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; InterPro IPR006130:IPR002082:IPR006132:IPR006131; KEGG: tjr:TherJR_1833 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; IMG reference gene:2505284301; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase YP_004625829.1 COGs: COG1528 Ferritin-like protein; InterPro IPR008331:IPR009040; KEGG: drt:Dret_0514 ferroxidase; PFAM: Ferritin Dps family protein; PRIAM: Ferroxidase; SPTR: Ferroxidase; IMG reference gene:2505284302; PFAM: Ferritin-like domain YP_004625830.1 COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814:IPR004636; KEGG: tte:TTE2495 PLP-dependent aminotransferase; PFAM: aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Acetylornithine and succinylornithine aminotransferases subfamily; TIGRFAM: acetylornithine and succinylornithine aminotransferase; IMG reference gene:2505284303; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases YP_004625831.1 COGs: COG1278 Cold shock protein; InterPro IPR019844:IPR011129:IPR002059:IPR012156; KEGG: tma:TM1683 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold shock-like protein; IMG reference gene:2505284304; PFAM: 'Cold-shock' DNA-binding domain YP_004625832.1 COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; InterPro IPR004528:IPR003329; KEGG: dak:DaAHT2_0943 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; IMG reference gene:2505284305; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_004625833.1 COGs: COG0662 Mannose-6-phosphate isomerase; InterPro IPR013096; KEGG: tye:THEYE_A1401 cupin domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2 conserved barrel domain protein; IMG reference gene:2505284306; PFAM: Cupin domain YP_004625834.1 COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496; KEGG: dsa:Desal_3796 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; PRIAM: Phosphoribosyl-AMP cyclohydrolase; SPTR: Phosphoribosyl-AMP cyclohydrolase; IMG reference gene:2505284307; PFAM: Phosphoribosyl-AMP cyclohydrolase YP_004625835.1 COGs: COG0040 ATP phosphoribosyltransferase; InterPro IPR018198:IPR020621:IPR013820:IPR013115; KEGG: dak:DaAHT2_1355 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; IMG reference gene:2505284308; PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase YP_004625836.1 COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR019734:IPR001440:IPR013026; KEGG: dal:Dalk_4399 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein; IMG reference gene:2505284309; PFAM: Tetratricopeptide repeat; TIGRFAM: type IV pilus biogenesis/stability protein PilW YP_004625837.1 KEGG: tye:THEYE_A0874 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284310; PFAM: Protein of unknown function (DUF2905) YP_004625838.1 COGs: COG1636 conserved hypothetical protein; InterPro IPR003828; KEGG: ddf:DEFDS_1431 hypothetical protein; PFAM: protein of unknown function DUF208; SPTR: Putative uncharacterized protein; IMG reference gene:2505284311; PFAM: Uncharacterized BCR, COG1636 YP_004625839.1 COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: ank:AnaeK_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III beta chain; SPTR: DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; IMG reference gene:2505284312; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit YP_004625840.1 COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR018522:IPR003594:IPR001241:IPR000565:IPR 013506:IPR006171:IPR002288:IPR011557; KEGG: dak:DaAHT2_2107 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; IMG reference gene:2505284313; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit YP_004625841.1 KEGG: dol:Dole_2595 hypothetical protein; SPTR: Conserved hypothetical cytosolic protein; IMG reference gene:2505284314 YP_004625842.1 InterPro IPR011449:IPR013424; KEGG: tmz:Tmz1t_1138 protein of unknown function DUF1555; PFAM: protein of unknown function DUF1555; SPTR: Putative uncharacterized protein; IMG reference gene:2505284316; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM putative exosortase interaction domain YP_004625843.1 COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: ddf:DEFDS_0032 cobalt ABC transporter substrate-binding protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: Cobalt ABC transporter, substrate-binding protein; IMG reference gene:2505284317; PFAM: Nickel uptake substrate-specific transmembrane region YP_004625844.1 COGs: COG0310 ABC-type Co2+ transport system permease component; InterPro IPR002751; KEGG: dsa:Desal_0774 cobalt transport protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; SPTR: Cobalamin (Vitamin B12) biosynthesis CbiM protein; IMG reference gene:2505284318; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM YP_004625845.1 KEGG: aco:Amico_0065 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284319 YP_004625846.1 COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339:IPR012809; KEGG: tye:THEYE_A1922 cobalt ABC transporter, permease protein CbiQ; PFAM: cobalt transport protein; SPTR: Cobalt ABC transporter, permease protein CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; IMG reference gene:2505284320; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ YP_004625847.1 COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: dsa:Desal_3208 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; IMG reference gene:2505284321; PFAM: ABC transporter YP_004625848.1 InterPro IPR005358; KEGG: dsa:Desal_3363 protein of unknown function UPF0153; PFAM: protein of unknown function UPF0153; SPTR: Putative uncharacterized protein; IMG reference gene:2505284322; PFAM: Uncharacterised protein family (UPF0153) YP_004625849.1 COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: dak:DaAHT2_0640 iojap-like protein; PFAM: Iojap-related protein; SPTR: Iojap-like protein; TIGRFAM: iojap-like protein; IMG reference gene:2505284323; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein YP_004625850.1 COGs: COG0696 Phosphoglyceromutase; InterPro IPR005995:IPR011258:IPR006124; KEGG: ade:Adeh_0235 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; PRIAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; IMG reference gene:2505284324; PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_004625851.1 COGs: COG0348 Polyferredoxin; KEGG: dak:DaAHT2_0879 polyferredoxin-like protein; SPTR: Polyferredoxin-like protein; manually curated; IMG reference gene:2505284325 YP_004625852.1 COGs: COG0780 Enzyme related to GTP cyclohydrolase I; InterPro IPR016856:IPR020602; KEGG: tal:Thal_1252 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: PreQ(1) synthase; SPTR: NADPH-dependent 7-cyano-7-deazaguanine reductase; TIGRFAM: 7-cyano-7-deazaguanine reductase; IMG reference gene:2505284326; PFAM: GTP cyclohydrolase I; TIGRFAM: 7-cyano-7-deazaguanine reductase YP_004625853.1 COGs: COG2982 Uncharacterized protein involved in outer membrane biogenesis; InterPro IPR007844; KEGG: geo:Geob_2842 AsmA family protein; PFAM: AsmA family protein; SPTR: AsmA family protein; IMG reference gene:2505284327; PFAM: AsmA family YP_004625854.1 COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: mtp:Mthe_0567 cation diffusion facilitator family transporter; PFAM: cation efflux protein; SPTR: Cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; IMG reference gene:2505284328; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_004625855.1 COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterPro IPR010048:IPR004137; KEGG: dae:Dtox_1609 hydroxylamine reductase; PFAM: Prismane; SPTR: Hybrid cluster protein; TIGRFAM: hybrid cluster protein; IMG reference gene:2505284330; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: hydroxylamine reductase YP_004625856.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005833:IPR005834:IPR006402:IPR006439; KEGG: ana:alr4095 hypothetical protein; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Alr4095 protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; IMG reference gene:2505284331; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase; REG-2-like, HAD superfamily (subfamily IA) hydrolase YP_004625857.1 InterPro IPR007197; KEGG: dtu:Dtur_0924 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; IMG reference gene:2505284332 YP_004625858.1 COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterProIPR001110:IPR003010:IPR004820:IPR011914:IPR 004821; KEGG: aae:aq_185 glycerol-3-phosphate cytidyltransferase; PFAM: cytidylyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Glycerol-3-phosphate cytidyltransferase; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; IMG reference gene:2505284333; PFAM: Cytidylyltransferase; Carbon-nitrogen hydrolase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain YP_004625859.1 COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: cth:Cthe_2248 phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: Phosphoribosyltransferase; IMG reference gene:2505284334; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein YP_004625860.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478:IPR001940:IPR001254:IPR011782; KEGG: nhl:Nhal_1160 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Protease Do; TIGRFAM: protease Do; IMG reference gene:2505284335; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; periplasmic serine pepetdase DegS YP_004625861.1 InterPro IPR013249:IPR014284; KEGG: oan:Oant_4467 FliA/WhiG family RNA polymerase sigma 28 subunit; PFAM: Sigma-70 region 4 type 2; SPTR: Putative RNA polymerase, sigma 28 subunit, FliA/WhiG family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; IMG reference gene:2505284336; PFAM: Sigma-70, region 4; Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004625862.1 COGs: COG1624 conserved hypothetical protein; InterPro IPR003390; KEGG: caa:Caka_1512 protein of unknown function DUF147; PFAM: protein of unknown function DUF147; SPTR: Putative uncharacterized protein; IMG reference gene:2505284337; PFAM: DisA bacterial checkpoint controller nucleotide-binding YP_004625863.1 COGs: COG3359 exonuclease; KEGG: dal:Dalk_5288 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284338 YP_004625864.1 InterPro IPR000297; KEGG: cac:CA_C0279 peptidil-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; IMG reference gene:2505284339; PFAM: PPIC-type PPIASE domain YP_004625865.1 COGs: COG2344 AT-rich DNA-binding protein; InterPro IPR009718:IPR003781; KEGG: sfu:Sfum_1603 redox-sensing transcriptional repressor REX; PFAM: CoA-binding domain protein; Rex DNA-binding domain protein; SPTR: Redox-sensing transcriptional repressor rex; IMG reference gene:2505284340; PFAM: CoA binding domain; Putative DNA-binding protein N-terminus YP_004625866.1 COGs: COG0536 GTPase; InterProIPR006074:IPR006073:IPR006169:IPR002917:IPR 014100:IPR005225; KEGG: aae:aq_2069 GTPase ObgE; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; small GTP-binding protein; IMG reference gene:2505284341; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain YP_004625867.1 COGs: COG0263 Glutamate 5-kinase; InterProIPR019797:IPR002478:IPR001057:IPR001048:IPR 011529:IPR005715; KEGG: dak:DaAHT2_1156 glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein; SPTR: Glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; IMG reference gene:2505284342; PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase YP_004625868.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR006638:IPR007197:IPR005244:IPR020050; KEGG: dak:DaAHT2_0567 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; IMG reference gene:2505284343; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily; menaquinone biosynthesis protein, SCO4550 family YP_004625869.1 COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: dak:DaAHT2_0568 amidohydrolase; PFAM: amidohydrolase; SPTR: Amidohydrolase; IMG reference gene:2505284344; PFAM: Amidohydrolase family YP_004625870.1 KEGG: dvl:Dvul_2509 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284345 YP_004625871.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: fpl:Ferp_1052 PfkB domain protein; PFAM: PfkB domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284346; PFAM: pfkB family carbohydrate kinase YP_004625872.1 COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: tye:THEYE_A0931 protein TldD; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Protein TldD; IMG reference gene:2505284347; PFAM: Putative modulator of DNA gyrase YP_004625873.1 COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterProIPR018087:IPR000583:IPR000836:IPR005854:IPR 017932; KEGG: dak:DaAHT2_1636 amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; IMG reference gene:2505284348; PFAM: Phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase YP_004625874.1 COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: dma:DMR_21400 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: Carboxylyase-related protein; SPTR: UbiD family decarboxylase; TIGRFAM: UbiD family decarboxylase; IMG reference gene:2505284349; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: menaquinone biosynthesis decarboxylase, SCO4490 family; UbiD family decarboxylases YP_004625875.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR017900:IPR004089:IPR017896; KEGG: clj:CLJU_c20370 putative transcriptional regulator; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Putative uncharacterized protein; IMG reference gene:2505284350; PFAM: Iron only hydrogenase large subunit, C-terminal domain; 4Fe-4S binding domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004625876.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR018109:IPR013221:IPR004101:IPR001645; KEGG: dal:Dalk_0204 FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; PRIAM: Tetrahydrofolate synthase; SPTR: FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; IMG reference gene:2505284351; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_004625877.1 COGs: COG4147 symporter; InterPro IPR001734:IPR019900; KEGG: dau:Daud_0272 SSS family solute/sodium (Na+) symporter; PFAM: Na+/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; IMG reference gene:2505284352; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family YP_004625878.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015:IPR006016; KEGG: dau:Daud_0271 UspA domain-containing protein; PFAM: UspA domain-containing protein; SPTR: UspA domain protein; IMG reference gene:2505284353; PFAM: Universal stress protein family YP_004625879.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: ddf:DEFDS_0015 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: N-acetylmuramoyl-L-alanine amidase; IMG reference gene:2505284354; PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes YP_004625880.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterProIPR000432:IPR007696:IPR005748:IPR007695:IPR 007860:IPR007861; KEGG: gsu:GSU1822 DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; SMART: MutS III domain protein; DNA mismatch repair protein MutS domain protein; SPTR: DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; IMG reference gene:2505284355; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS YP_004625881.1 COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122:IPR005273; KEGG: rpf:Rpic12D_1308 phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; SPTR: Putative uncharacterized protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; IMG reference gene:2505284356; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase family domain; uracil-DNA glycosylase, family 4 YP_004625882.1 COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterProIPR002078:IPR003018:IPR003593:IPR020441:IPR 002197; KEGG: sfu:Sfum_1010 NifA subfamily transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: GAF domain protein; AAA ATPase; SPTR: Transcriptional regulator, NifA subfamily, Fis Family; IMG reference gene:2505284357; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: Nif-specific regulatory protein YP_004625883.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR002034:IPR000891; KEGG: dsa:Desal_0448 pyruvate carboxyltransferase; PFAM: pyruvate carboxyltransferase; SPTR: Pyruvate carboxyltransferase; IMG reference gene:2505284358; PFAM: HMGL-like YP_004625884.1 COGs: COG1348 Nitrogenase subunit NifH (ATPase); InterPro IPR000392:IPR005977; KEGG: slp:Slip_2130 nitrogenase iron protein; PFAM: NifH/frxC-family protein; PRIAM: Nitrogenase; SPTR: Nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; IMG reference gene:2505284359; PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; TIGRFAM: nitrogenase iron protein YP_004625885.1 COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR017918:IPR002187; KEGG: mfs:MFS40622_0032 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: Nitrogen regulatory protein P-II; IMG reference gene:2505284360; PFAM: Nitrogen regulatory protein P-II YP_004625886.1 COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR017918:IPR002187; KEGG: mba:Mbar_A2279 P-II family nitrogen regulatory protein; PFAM: nitrogen regulatory protein P-II; SPTR: Nitrogen regulatory protein P-II; IMG reference gene:2505284361; PFAM: Nitrogen regulatory protein P-II YP_004625887.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: rci:RCIX325 hypothetical protein; PFAM: Radical SAM domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284362; PFAM: Radical SAM superfamily; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB YP_004625888.1 COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000318:IPR000510:IPR005974:IPR010143; KEGG: dau:Daud_0146 nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; SPTR: Nitrogenase protein alpha chain; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase alpha chain; manually curated; selenocysteine-containing protein; IMG reference gene:2505284363; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase alpha chain YP_004625889.1 COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000318:IPR000510; KEGG: dau:Daud_0147 nitrogenase; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: Nitrogenase; IMG reference gene:2505284364; PFAM: Nitrogenase component 1 type Oxidoreductase YP_004625890.1 COGs: COG1513 Cyanate lyase; InterPro IPR008076:IPR003712; KEGG: syw:SYNW2490 cyanate hydratase; PFAM: Cyanate lyase domain protein; PRIAM: Cyanase; SPTR: Cyanate hydratase; TIGRFAM: cyanate lyase; IMG reference gene:2505284365; PFAM: Cyanate lyase C-terminal domain; TIGRFAM: cyanate hydratase YP_004625891.1 COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000318:IPR000510; KEGG: mfs:MFS40622_0041 oxidoreductase/nitrogenase component 1; PFAM: oxidoreductase/nitrogenase component 1; SPTR: Oxidoreductase/nitrogenase component 1; IMG reference gene:2505284366; PFAM: Nitrogenase component 1 type Oxidoreductase YP_004625892.1 COGs: COG5561 metal-binding protein; InterPro IPR014925; KEGG: dat:HRM2_49320 hypothetical protein; PFAM: protein of unknown function CGGC region; SPTR: Putative uncharacterized protein; IMG reference gene:2505284367; PFAM: CGGC domain YP_004625893.1 COGs: COG0708 Exonuclease III; InterPro IPR005135:IPR000097:IPR004808; KEGG: gvi:glr0140 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: Exodeoxyribonuclease III; SPTR: Exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; IMG reference gene:2505284368; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth) YP_004625894.1 COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: pho:PH1527 Frv operon protein FrvX; PFAM: peptidase M42 family protein; SPTR: Tetrahedral aminopeptidase; IMG reference gene:2505284369; PFAM: M42 glutamyl aminopeptidase YP_004625895.1 KEGG: dau:Daud_1123 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284370 YP_004625896.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR000014:IPR003661:IPR003594:IPR004358:IPR 013767:IPR005467; KEGG: sfu:Sfum_2495 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; IMG reference gene:2505284371; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004625897.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR000103:IPR013027:IPR001327; KEGG: tye:THEYE_A0446 oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Oxidoreductase; IMG reference gene:2505284372; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004625898.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015:IPR006016; KEGG: dma:DMR_17860 putative universal stress protein; PFAM: UspA domain-containing protein; SPTR: UspA; IMG reference gene:2505284373; PFAM: Universal stress protein family YP_004625899.1 COGs: COG0613 metal-dependent phosphoesterase (PHP family); InterPro IPR003141:IPR004013; KEGG: chy:CHY_2227 phosphotransferase domain-containing protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: PHP domain protein; IMG reference gene:2505284374; PFAM: PHP domain YP_004625900.1 COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR018496:IPR002942:IPR006145:IPR000748; KEGG: adg:Adeg_1292 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; IMG reference gene:2505284375; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase YP_004625901.1 COGs: COG0196 FAD synthase; InterPro IPR015864:IPR015865:IPR002606; KEGG: dak:DaAHT2_1659 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; SPTR: Riboflavin kinase / FAD synthetase; TIGRFAM: riboflavin biosynthesis protein RibF; IMG reference gene:2505284376; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase YP_004625902.1 KEGG: sfu:Sfum_0344 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284377; PFAM: Domain of unknown function (DUF2760) YP_004625903.1 COGs: COG0505 Carbamoylphosphate synthase small subunit; InterProIPR001317:IPR011702:IPR006220:IPR002474:IPR 000991:IPR006274:IPR017926; KEGG: dak:DaAHT2_0900 carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; SPTR: Carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; IMG reference gene:2505284378; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit YP_004625904.1 KEGG: lbf:LBF_1866 signal transduction protein; SPTR: Transcription termination factor Rho; IMG reference gene:2505284379 YP_004625905.1 COGs: COG0125 Thymidylate kinase; InterProIPR018095:IPR003593:IPR018094:IPR004948:IPR 000062; KEGG: apo:Arcpr_0346 thymidylate kinase; PFAM: thymidylate kinase; protein of unknown function DUF265; PRIAM: Nucleoside-triphosphatase., dTMP kinase; SMART: AAA ATPase; SPTR: Probable thymidylate kinase; TIGRFAM: thymidylate kinase; IMG reference gene:2505284380; PFAM: Protein of unknown function, DUF265; Thymidylate kinase; TIGRFAM: thymidylate kinase YP_004625906.1 COGs: COG2840 conserved hypothetical protein; InterPro IPR002625; KEGG: dal:Dalk_1036 Smr protein/MutS2; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; SPTR: Smr protein/MutS2; IMG reference gene:2505284381; PFAM: Smr domain YP_004625907.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR000014:IPR003594:IPR001789:IPR004358:IPR 013767:IPR005467; KEGG: ddf:DEFDS_0784 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; response regulator receiver; SPTR: Putative uncharacterized protein; TIGRFAM: PAS sensor protein; IMG reference gene:2505284382; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box YP_004625908.1 COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR003607:IPR006674:IPR006261; KEGG: dps:DP1797 deoxyguanosinetriphosphate triphosphohydrolase-like protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Related to deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; IMG reference gene:2505284383; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative YP_004625909.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: aae:aq_894 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; IMG reference gene:2505284384; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_004625910.1 COGs: COG1391 Glutamine synthetase adenylyltransferase; InterPro IPR005190:IPR013546; KEGG: gme:Gmet_0071 glutamate-ammonia ligase adenylyltransferase; PFAM: GlnD PII-uridylyltransferase; glutamate-ammonia ligase adenylyltransferase; PRIAM: [Glutamate--ammonia-ligase] adenylyltransferase; SPTR: Glutamate-ammonia ligase adenylyltransferase; IMG reference gene:2505284385; PFAM: GlnD PII-uridylyltransferase; Glutamate-ammonia ligase adenylyltransferase YP_004625911.1 COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR003557:IPR002541:IPR017562; KEGG: sfu:Sfum_0695 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Probable cytochrome c biogenesis protein (CcsA); TIGRFAM: cytochrome c-type biogenesis protein CcsB; IMG reference gene:2505284386; PFAM: Cytochrome C assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB YP_004625912.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR020053:IPR001789:IPR003661:IPR003594:IPR 004358:IPR005467; KEGG: cts:Ctha_2310 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SPTR: Putative Histidine kinase; IMG reference gene:2505284387; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004625913.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: hmo:HM1_3019 nitroreductase family protein; PFAM: nitroreductase; SPTR: Nitroreductase family protein; IMG reference gene:2505284388; PFAM: Nitroreductase family YP_004625914.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: dvm:DvMF_1483 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Inner-membrane translocator; IMG reference gene:2505284389; PFAM: Branched-chain amino acid transport system / permease component YP_004625915.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: sfu:Sfum_0384 ABC transporter related; PFAM: inner-membrane translocator; SPTR: ABC transporter related; IMG reference gene:2505284390; PFAM: Branched-chain amino acid transport system / permease component YP_004625916.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ank:AnaeK_1445 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; IMG reference gene:2505284391; PFAM: Glycosyl transferases group 1 YP_004625917.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: bts:Btus_0502 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; IMG reference gene:2505284392; PFAM: Polysaccharide deacetylase YP_004625918.1 InterPro IPR005242; KEGG: geo:Geob_3377 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284393; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein YP_004625919.1 InterPro IPR001455:IPR019870; KEGG: drm:Dred_1242 SirA family protein; PFAM: SirA-like domain-containing protein; SPTR: Transcriptional regulator; TIGRFAM: selenium metabolism protein YedF; IMG reference gene:2505284394; PFAM: DsrE/DsrF-like family; SirA-like protein; TIGRFAM: selenium metabolism protein YedF YP_004625920.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR020578:IPR000192:IPR010969; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase; PFAM: aminotransferase class V; SPTR: Cysteine desulfurase / selenocysteine lyase; TIGRFAM: cysteine desulfurase family protein; IMG reference gene:2505284395; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein YP_004625921.1 KEGG: gsu:GSU0640 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284396; PFAM: Protein of unknown function (DUF3343) YP_004625922.1 COGs: COG0691 tmRNA-binding protein; InterPro IPR020081:IPR000037; KEGG: ate:Athe_0463 SsrA-binding protein; PFAM: SmpB protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; tmRNA as predicted by Rfam (RF00023), score 220.13; IMG reference gene:2505284397; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein YP_004625923.1 COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR002355:IPR001763:IPR013027:IPR004099; KEGG: dps:DP2890 NADH oxidase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; SPTR: Related to NADH oxidase; IMG reference gene:2505284398; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Rhodanese-like domain; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_004625924.1 KEGG: tye:THEYE_A0926 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284399; PFAM: Protein of unknown function (DUF2934) YP_004625925.1 COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963:IPR006656:IPR006657:IPR017896; KEGG: dma:DMR_26720 molybdopterin oxidoreductase; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; SPTR: Molybdopterin oxidoreductase; IMG reference gene:2505284400; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain YP_004625926.1 COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: aba:Acid345_2396 transglutaminase-like; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein; SPTR: Transglutaminase-like; IMG reference gene:2505284401; PFAM: Transglutaminase-like superfamily YP_004625927.1 InterPro IPR004843:IPR004365; KEGG: mif:Metin_0769 metallophosphoesterase; PFAM: metallophosphoesterase; nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Putative uncharacterized protein; IMG reference gene:2505284402; PFAM: Calcineurin-like phosphoesterase YP_004625928.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063:IPR012089; KEGG: dal:Dalk_1237 PP-loop domain protein; PFAM: PP-loop domain protein; SPTR: PP-loop domain protein; IMG reference gene:2505284403; PFAM: PP-loop family YP_004625929.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: nca:Noca_2984 chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Chemotaxis sensory transducer; IMG reference gene:2505284404; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004625930.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709:IPR001828; KEGG: sit:TM1040_3178 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor; IMG reference gene:2505284405; PFAM: Receptor family ligand binding region YP_004625931.1 COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR001451; KEGG: dps:DP2923 bifunctional GlmU protein; SPTR: Probable bifunctional GlmU protein; IMG reference gene:2505284406 YP_004625932.1 COGs: COG0467 RecA-superfamily ATPase implicated in signal transduction; InterPro IPR014774:IPR010624; KEGG: aae:aq_204 hypothetical protein; PFAM: Circadian clock protein KaiC central region; SPTR: Putative uncharacterized protein; IMG reference gene:2505284407; PFAM: KaiC; TIGRFAM: KaiC domain protein, AF_0795 family YP_004625933.1 COGs: COG0448 ADP-glucose pyrophosphorylase; InterPro IPR005836:IPR018103:IPR005835; KEGG: dak:DaAHT2_1367 nucleotidyl transferase; PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate adenylyltransferase; IMG reference gene:2505284408; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase YP_004625934.1 COGs: COG2930 conserved hypothetical protein; KEGG: dps:DP2816 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284409; PFAM: Family of unknown function (DUF500) YP_004625935.1 COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: nam:NAMH_1777 metal-dependent hydrolase of the beta-lactamase superfamily; SPTR: Putative uncharacterized protein; IMG reference gene:2505284410; PFAM: Metallo-beta-lactamase superfamily YP_004625936.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dsa:Desal_1121 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor; IMG reference gene:2505284411; PFAM: Receptor family ligand binding region YP_004625937.1 COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR003661:IPR003594:IPR001789:IPR004358:IPR 000014:IPR005467; KEGG: ddf:DEFDS_0784 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SPTR: Putative uncharacterized protein; TIGRFAM: PAS sensor protein; IMG reference gene:2505284412; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; TIGRFAM: PAS domain S-box YP_004625938.1 KEGG: bmy:Bm1_07165 ATPase, AAA family protein; SPTR: ATPase, AAA family protein; IMG reference gene:2505284413 YP_004625939.1 COGs: COG0422 Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: dak:DaAHT2_1551 thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; SPTR: Thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; IMG reference gene:2505284414; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC YP_004625940.1 COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006130:IPR002292:IPR006132:IPR006131; KEGG: dak:DaAHT2_2211 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; SPTR: Ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; IMG reference gene:2505284415; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase YP_004625941.1 COGs: COG3893 Inactivated superfamily I helicase; KEGG: dsa:Desal_2713 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284416 YP_004625942.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505284417 YP_004625943.1 COGs: COG1533 DNA repair photolyase; KEGG: dal:Dalk_0910 DNA repair photolyase-like protein; SPTR: DNA repair photolyase-like protein; IMG reference gene:2505284418 YP_004625944.1 InterPro IPR011031; KEGG: sse:Ssed_4024 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284419 YP_004625945.1 COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR000241:IPR002478; KEGG: chy:CHY_1437 hypothetical protein; PFAM: RNA methylase; SPTR: Putative uncharacterized protein; IMG reference gene:2505284420; PFAM: S-adenosylmethionine-dependent methyltransferase YP_004625946.1 COGs: COG1796 DNA polymerase IV (family X); InterProIPR002054:IPR003583:IPR003141:IPR002008:IPR 004013; KEGG: adg:Adeg_1792 DNA-directed DNA polymerase; PFAM: PHP domain protein; SMART: DNA polymerase X; Helix-hairpin-helix DNA-binding class 1; phosphoesterase PHP domain protein; SPTR: DNA-directed DNA polymerase; IMG reference gene:2505284421; PFAM: PHP domain YP_004625947.1 InterPro IPR019127:IPR013426; KEGG: dde:Dde_0847 hypothetical protein; PFAM: Exosortase EpsH-related; SPTR: Membrane protein, putative; TIGRFAM: eight transmembrane protein EpsH; IMG reference gene:2505284422; PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: eight transmembrane protein EpsH (proposed exosortase) YP_004625948.1 InterPro IPR014263; KEGG: sus:Acid_6339 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: EpsI family protein; IMG reference gene:2505284423; PFAM: Protein of unknown function (DUF3485); TIGRFAM: EpsI family protein YP_004625949.1 COGs: COG0693 Putative intracellular protease/amidase; InterPro IPR002818:IPR006287; KEGG: tal:Thal_0984 DJ-1 family protein; PFAM: ThiJ/PfpI domain-containing protein; SPTR: DJ-1 family protein; TIGRFAM: DJ-1 family protein; IMG reference gene:2505284424; PFAM: DJ-1/PfpI family; TIGRFAM: DJ-1 family protein YP_004625950.1 COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR015977:IPR007229:IPR006405; KEGG: sfu:Sfum_2602 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; SPTR: Nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; IMG reference gene:2505284426; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: putative nicotinate phosphoribosyltransferase YP_004625951.1 COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: sfu:Sfum_2603 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: Isochorismatase hydrolase; IMG reference gene:2505284427; PFAM: Isochorismatase family YP_004625952.1 COGs: COG1639 signal transduction protein; InterPro IPR003607:IPR013976:IPR006675; KEGG: dal:Dalk_3991 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; IMG reference gene:2505284428; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG YP_004625953.1 COGs: COG3039 Transposase and inactivated derivatives IS5 family; InterPro IPR002559; KEGG: cyn:Cyan7425_5319 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: Transposase; IMG reference gene:2505284429; PFAM: Transposase DDE domain; Transposase domain (DUF772) YP_004625954.1 KEGG: cth:Cthe_0307 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284430 YP_004625955.1 KEGG: afw:Anae109_4344 hypothetical protein; SPTR: Predicted protein; IMG reference gene:2505284431; PFAM: Protein of unknown function (DUF2752) YP_004625956.1 COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR001468:IPR013798; KEGG: dak:DaAHT2_0450 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: Indole-3-glycerol-phosphate synthase; manually curated; IMG reference gene:2505284432; PFAM: Indole-3-glycerol phosphate synthase YP_004625957.1 InterPro IPR000834:IPR003961; KEGG: dps:DP0434 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284433 YP_004625958.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR002986; KEGG: dma:DMR_21290 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; IMG reference gene:2505284434; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase YP_004625959.1 COGs: COG0253 Diaminopimelate epimerase; InterPro IPR018510:IPR001653; KEGG: sfu:Sfum_0057 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; IMG reference gene:2505284435; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase YP_004625960.1 COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR020624:IPR020625:IPR002220:IPR005263; KEGG: gbm:Gbem_4054 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; IMG reference gene:2505284436; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase YP_004625961.1 COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR000846:IPR011770; KEGG: dak:DaAHT2_2218 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; IMG reference gene:2505284437; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase YP_004625962.1 COGs: COG3039 Transposase and inactivated derivatives IS5 family; InterPro IPR002559; KEGG: cyn:Cyan7425_5319 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: Transposase; IMG reference gene:2505284438; PFAM: Transposase DDE domain; Transposase domain (DUF772) YP_004625963.1 KEGG: llm:llmg_1806 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284440 YP_004625964.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR002078:IPR001789:IPR003593:IPR020441:IPR 002197; KEGG: dal:Dalk_0340 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; IMG reference gene:2505284441; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004625965.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661:IPR003594:IPR004358:IPR005467; KEGG: dma:DMR_02390 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Cell cycle histidine kinase CckA; IMG reference gene:2505284442; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004625966.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR000792:IPR006685; KEGG: dol:Dole_1640 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: MscS Mechanosensitive ion channel; IMG reference gene:2505284443; PFAM: Mechanosensitive ion channel YP_004625967.1 COGs: COG3004 Na+/H+ antiporter; InterPro IPR004670; KEGG: tdn:Suden_1784 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; SPTR: Na+/H+ antiporter NhaA; TIGRFAM: Na+/H+ antiporter NhaA; IMG reference gene:2505284444; PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA YP_004625968.1 KEGG: lpa:lpa_02799 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284445; PFAM: Archaeal ATPase YP_004625969.1 COGs: COG2231 Uncharacterized protein related to Endonuclease III; InterPro IPR003265:IPR003651; KEGG: hor:Hore_02160 HhH-GPD family protein; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284446; PFAM: HhH-GPD superfamily base excision DNA repair protein; Iron-sulfur binding domain of endonuclease III YP_004625970.1 COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: dal:Dalk_5014 amidohydrolase; PFAM: amidohydrolase; SPTR: Amidohydrolase; IMG reference gene:2505284447; PFAM: Amidohydrolase family YP_004625971.1 COGs: COG0804 Urea amidohydrolase (urease) alpha subunit; InterProIPR017950:IPR005848:IPR017952:IPR011612:IPR 006680:IPR017951; KEGG: tjr:TherJR_0607 urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain-containing protein; PRIAM: Urease; SPTR: Urease subunit alpha; TIGRFAM: urease, alpha subunit; IMG reference gene:2505284448; PFAM: Urease alpha-subunit, N-terminal domain; Amidohydrolase family; TIGRFAM: urease, alpha subunit YP_004625972.1 COGs: COG0832 Urea amidohydrolase (urease) beta subunit; InterPro IPR002019; KEGG: ant:Arnit_1070 urease subunit gamma; PFAM: Urease beta subunit; PRIAM: Urease; SPTR: Urease, gamma subunit; TIGRFAM: urease, beta subunit; IMG reference gene:2505284449; PFAM: Urease beta subunit; TIGRFAM: urease, beta subunit YP_004625973.1 COGs: COG0831 Urea amidohydrolase (urease) gamma subunit; InterPro IPR012010:IPR002026; KEGG: tjr:TherJR_0605 urease, gamma subunit; PFAM: Urease gamma subunit region; PRIAM: Urease; SPTR: Urease subunit gamma; TIGRFAM: urease, gamma subunit; IMG reference gene:2505284450; PFAM: Urease, gamma subunit; TIGRFAM: urease, gamma subunit YP_004625974.1 COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterProIPR002078:IPR003018:IPR003593:IPR020441:IPR 002197; KEGG: aae:aq_218 NifA family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; GAF domain protein; SPTR: Transcriptional regulator (NifA family); IMG reference gene:2505284451; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004625975.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828:IPR006311:IPR017777:IPR017909; KEGG: csc:Csac_2475 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor; TIGRFAM: urea ABC transporter, urea binding protein; IMG reference gene:2505284452; PFAM: Receptor family ligand binding region; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; urea ABC transporter, urea binding protein YP_004625976.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851:IPR017779; KEGG: abo:ABO_1984 branched-chain amino acid ABC transporter,permease protein; PFAM: inner-membrane translocator; SPTR: Branched-chain amino acid ABC transporter,permease protein; TIGRFAM: urea ABC transporter, permease protein UrtB; IMG reference gene:2505284453; PFAM: Branched-chain amino acid transport system / permease component; TIGRFAM: urea ABC transporter, permease protein UrtB YP_004625977.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851:IPR017778; KEGG: cth:Cthe_1821 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Inner-membrane translocator; TIGRFAM: urea ABC transporter, permease protein UrtC; IMG reference gene:2505284454; PFAM: Branched-chain amino acid transport system / permease component; TIGRFAM: urea ABC transporter, permease protein UrtC YP_004625978.1 COGs: COG4674 Uncharacterized ABC-type transport system ATPase component; InterPro IPR003439:IPR017781; KEGG: sde:Sde_2972 response regulator receiver domain-containing protein; PFAM: ABC transporter related; SPTR: ABC transporter related; TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; IMG reference gene:2505284455; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; TIGRFAM: urea ABC transporter, ATP-binding protein UrtD YP_004625979.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439:IPR017780; KEGG: vap:Vapar_3141 UreA ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Urea ABC transporter, ATP-binding protein UrtE; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; IMG reference gene:2505284456; PFAM: ABC transporter; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE YP_004625980.1 COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269:IPR005268; KEGG: cyn:Cyan7425_0411 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: Putative uncharacterized protein; IMG reference gene:2505284458; PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein YP_004625981.1 COGs: COG2518 Protein-L-isoaspartate carboxylmethyltransferase; InterPro IPR000682; KEGG: sfu:Sfum_2480 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; PRIAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: Protein-L-isoaspartate O-methyltransferase 1; TIGRFAM: protein-L-isoaspartate O-methyltransferase; IMG reference gene:2505284459; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004625982.1 KEGG: pct:PC1_1608 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284460; PFAM: SmpA / OmlA family YP_004625983.1 KEGG: pfh:PFHG_05453 predicted protein; SPTR: Antigen 332, DBL-like protein; IMG reference gene:2505284461 YP_004625984.1 COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689:IPR013026; KEGG: dal:Dalk_2404 outer membrane assembly lipoprotein YfiO; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO; IMG reference gene:2505284462; TIGRFAM: outer membrane assembly lipoprotein YfiO YP_004625985.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR008255:IPR000103:IPR013027:IPR005982; KEGG: tte:TTE2220 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin reductase; TIGRFAM: thioredoxin reductase; IMG reference gene:2505284463; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase YP_004625986.1 COGs: COG3118 Thioredoxin domain-containing protein; InterProIPR017937:IPR006662:IPR013766:IPR005746:IPR 017936; KEGG: dsa:Desal_1817 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; IMG reference gene:2505284464; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_004625987.1 KEGG: dak:DaAHT2_0556 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284466 YP_004625988.1 COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382:IPR007085:IPR005252; KEGG: dau:Daud_1595 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; IMG reference gene:2505284467; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic YP_004625989.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR001131:IPR000587:IPR000994; KEGG: dak:DaAHT2_1915 peptidase M24; PFAM: peptidase M24; creatinase; SPTR: Peptidase M24; IMG reference gene:2505284468; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_004625990.1 InterPro IPR003856; KEGG: pmx:PERMA_0007 chain length determinant protein; PFAM: lipopolysaccharide biosynthesis protein; SPTR: Chain length determinant protein; IMG reference gene:2505284469; PFAM: Chain length determinant protein YP_004625991.1 COGs: COG0293 23S rRNA methylase; InterPro IPR002877:IPR016448; KEGG: dba:Dbac_3489 ribosomal RNA methyltransferase RrmJ/FtsJ; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; SPTR: Ribosomal RNA methyltransferase RrmJ/FtsJ; IMG reference gene:2505284470; PFAM: FtsJ-like methyltransferase; TIGRFAM: cell division protein FtsJ YP_004625992.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: ddf:DEFDS_0657 branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Branched-chain amino acid ABC transporter, ATP-binding protein; IMG reference gene:2505284471; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_004625993.1 COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171; KEGG: tjr:TherJR_2661 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; SPTR: Methylenetetrahydrofolate reductase; IMG reference gene:2505284472; PFAM: Methylene-tetrahydrofolate reductase C terminal; Methylenetetrahydrofolate reductase YP_004625994.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR002078:IPR001789:IPR003593:IPR020441:IPR 002197; KEGG: sfu:Sfum_1934 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; IMG reference gene:2505284473; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004625995.1 COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterProIPR003660:IPR000014:IPR003661:IPR003594:IPR 004358:IPR013767:IPR017232:IPR005467; KEGG: geo:Geob_2314 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; histidine kinase A domain protein; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; IMG reference gene:2505284474; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004625996.1 KEGG: dat:HRM2_11180 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284475 YP_004625997.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: dak:DaAHT2_0557 nitroreductase; PFAM: nitroreductase; SPTR: Nitroreductase; IMG reference gene:2505284476; PFAM: Nitroreductase family YP_004625998.1 COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: iho:Igni_0620 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: NADPH-dependent FMN reductase; IMG reference gene:2505284477; PFAM: NADPH-dependent FMN reductase YP_004625999.1 COGs: COG0421 Spermidine synthase; InterPro IPR001045; KEGG: pla:Plav_0583 spermidine synthase; PFAM: Spermine synthase; SPTR: Spermidine synthase; IMG reference gene:2505284478; PFAM: Spermine/spermidine synthase; TIGRFAM: spermidine synthase YP_004626000.1 COGs: COG2046 ATP sulfurylase (sulfate adenylyltransferase); InterPro IPR002650; KEGG: adg:Adeg_1712 sulfate adenylyltransferase; PFAM: ATP-sulfurylase; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; IMG reference gene:2505284479; PFAM: ATP-sulfurylase; TIGRFAM: ATP sulphurylase YP_004626001.1 KEGG: pas:Pars_1241 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284480 YP_004626002.1 COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: dak:DaAHT2_0978 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: Putative uncharacterized protein; IMG reference gene:2505284481; PFAM: Protein of unknown function (DUF1343) YP_004626003.1 COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667; KEGG: dak:DaAHT2_1369 phosphoesterase RecJ domain protein; PFAM: phosphoesterase RecJ domain protein; SPTR: Phosphoesterase, RecJ-like:Phosphoesterase, DHHA1; IMG reference gene:2505284482; PFAM: DHH family YP_004626004.1 InterPro IPR013429; KEGG: sfu:Sfum_1903 FmdB family regulatory protein; PFAM: Putative regulatory protein FmdB; SPTR: Putative regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; IMG reference gene:2505284483; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family YP_004626005.1 COGs: COG0448 ADP-glucose pyrophosphorylase; InterPro IPR005836:IPR005835; KEGG: dak:DaAHT2_1368 nucleotidyl transferase; PFAM: Nucleotidyl transferase; SPTR: Nucleotidyl transferase; IMG reference gene:2505284484; PFAM: Nucleotidyl transferase YP_004626006.1 COGs: COG1925 Phosphotransferase system HPr-related protein; InterPro IPR001020:IPR005698:IPR000032; KEGG: mta:Moth_0015 HPrNtr; PFAM: phosphoryl transfer system HPr; SPTR: HPrNtr; TIGRFAM: phosphocarrier, HPr family; IMG reference gene:2505284485; PFAM: PTS HPr component phosphorylation site; TIGRFAM: Phosphotransferase System HPr (HPr) Family YP_004626007.1 COGs: COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component); InterPro IPR000121:IPR006318:IPR008731:IPR008279; KEGG: sfu:Sfum_0772 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; SPTR: Phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; IMG reference gene:2505284486; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase YP_004626008.1 InterPro IPR003856; KEGG: pmx:PERMA_0007 chain length determinant protein; PFAM: lipopolysaccharide biosynthesis protein; SPTR: Chain length determinant protein; IMG reference gene:2505284487 YP_004626009.1 KEGG: gem:GM21_1506 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284488 YP_004626010.1 COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: gsu:GSU1899 virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; SPTR: Virulence factor Mce family protein; IMG reference gene:2505284489; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein YP_004626011.1 COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: sat:SYN_00410 ABC-type transport system, ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC-type transport system, ATP-binding component; IMG reference gene:2505284490; PFAM: ABC transporter YP_004626012.1 COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component; PFAM: protein of unknown function DUF140; SPTR: ABC-type transport system involved in resistance to organic solvents, permease component; IMG reference gene:2505284491; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein YP_004626013.1 COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: adg:Adeg_1934 protein-tyrosine phosphatase, low molecular weight; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Protein-tyrosine phosphatase, low molecular weight; IMG reference gene:2505284492; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_004626014.1 COGs: COG4277 DNA-binding protein with the Helix-hairpin-helix motif; InterPro IPR006638:IPR003583:IPR007197:IPR000445; KEGG: dth:DICTH_1688 radical SAM; PFAM: Radical SAM domain protein; helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; Elongator protein 3/MiaB/NifB; SPTR: Radical SAM; IMG reference gene:2505284493; PFAM: Radical SAM superfamily; Helix-hairpin-helix motif YP_004626015.1 KEGG: nam:NAMH_0673 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284494 YP_004626016.1 InterPro IPR000326; KEGG: hth:HTH_0940 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: Phosphoesterase, PA-phosphatase related; IMG reference gene:2505284495; PFAM: PAP2 superfamily YP_004626017.1 InterPro IPR011528; KEGG: dba:Dbac_0218 NERD domain protein; PFAM: NERD domain protein; SPTR: NERD domain protein; IMG reference gene:2505284496; PFAM: Nuclease-related domain YP_004626018.1 KEGG: bba:Bd3656 MFS permease; SPTR: MFS permease; IMG reference gene:2505284498 YP_004626019.1 InterPro IPR000182; KEGG: bid:Bind_1082 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; IMG reference gene:2505284499; PFAM: Acetyltransferase (GNAT) family YP_004626020.1 COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: aba:Acid345_3437 beta-lactamase-like; SPTR: UPF0173 metal-dependent hydrolase Acid345_3437; IMG reference gene:2505284500; PFAM: Metallo-beta-lactamase superfamily YP_004626021.1 COGs: COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; KEGG: dps:DP1766 molybdopterin-guanine dinucleotide biosynthesis protein B; SPTR: Related to molybdopterin-guanine dinucleotide biosynthesis protein B; IMG reference gene:2505284501; PFAM: Molybdopterin guanine dinucleotide synthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_004626022.1 COGs: COG1351 alternative thymidylate synthase; InterPro IPR003669; KEGG: hya:HY04AAS1_0508 thymidylate synthase complementing protein ThyX; PFAM: thymidylate synthase complementing protein ThyX; SPTR: Thymidylate synthase complementing protein ThyX; IMG reference gene:2505284502; PFAM: Thymidylate synthase complementing protein; TIGRFAM: thymidylate synthase, flavin-dependent YP_004626023.1 COGs: COG0756 dUTPase; InterPro IPR008180:IPR008181; KEGG: drm:Dred_0491 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; SPTR: Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; IMG reference gene:2505284503; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) YP_004626024.1 COGs: COG1542 conserved hypothetical protein; InterPro IPR007548; KEGG: trq:TRQ2_1791 hypothetical protein; PFAM: protein of unknown function DUF505; SPTR: Putative uncharacterized protein; IMG reference gene:2505284504; PFAM: Protein of unknown function (DUF505) YP_004626025.1 COGs: COG1379 conserved hypothetical protein; InterPro IPR004013; KEGG: dtu:Dtur_1268 PHP domain protein; PFAM: PHP domain protein; SPTR: PHP domain protein; IMG reference gene:2505284505; TIGRFAM: TIGR00375 family protein YP_004626026.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR004358:IPR013656:IPR013767:IPR005467:IPR000700; KEGG: ppd:Ppro_0904 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; SPTR: PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; IMG reference gene:2505284506; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004626027.1 COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR003682; KEGG: dat:HRM2_24880 GidB; PFAM: glucose inhibited division protein; SPTR: Ribosomal RNA small subunit methyltransferase G; TIGRFAM: methyltransferase GidB; IMG reference gene:2505284507; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB YP_004626028.1 KEGG: dol:Dole_1867 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2505284508 YP_004626029.1 COGs: COG0556 Helicase subunit of the DNA excision repair complex; InterProIPR014001:IPR001650:IPR004807:IPR006935:IPR 001943:IPR014021; KEGG: gme:Gmet_3219 excinuclease ABC subunit B; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: UvrABC system protein B; TIGRFAM: excinuclease ABC, B subunit; IMG reference gene:2505284509; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit YP_004626030.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR018483:IPR006224:IPR006145; KEGG: dtu:Dtur_0345 pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: Pseudouridine synthase; IMG reference gene:2505284510; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family YP_004626031.1 KEGG: tmt:Tmath_0891 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284511; PFAM: Protein of unknown function (DUF1049) YP_004626032.1 InterPro IPR005358; KEGG: dal:Dalk_2850 protein of unknown function UPF0153; PFAM: protein of unknown function UPF0153; SPTR: Putative uncharacterized protein; IMG reference gene:2505284512; PFAM: Uncharacterised protein family (UPF0153) YP_004626033.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: gur:Gura_4185 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; IMG reference gene:2505284513; PFAM: Phosphoglycerate mutase family YP_004626034.1 KEGG: ade:Adeh_3903 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284514 YP_004626035.1 COGs: COG1420 Transcriptional regulator of heat shock gene; InterPro IPR002571:IPR021153; KEGG: gme:Gmet_3534 heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like; SPTR: Heat-inducible transcription repressor hrcA; TIGRFAM: heat-inducible transcription repressor HrcA; IMG reference gene:2505284515; PFAM: Domain of unknown function; HrcA protein C terminal domain; TIGRFAM: heat shock gene repressor HrcA YP_004626036.1 COGs: COG0576 Molecular chaperone GrpE (heat shock protein); InterPro IPR000740; KEGG: dak:DaAHT2_0057 GrpE protein; PFAM: GrpE protein; SPTR: GrpE protein; IMG reference gene:2505284516; PFAM: GrpE YP_004626037.1 COGs: COG0443 Molecular chaperone; InterPro IPR018181:IPR012725:IPR001023:IPR013126; KEGG: ddf:DEFDS_2114 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein dnaK; TIGRFAM: chaperone protein DnaK; IMG reference gene:2505284517; PFAM: Hsp70 protein; TIGRFAM: Fe-S protein assembly chaperone HscA; chaperone protein DnaK YP_004626038.1 COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398; KEGG: drm:Dred_2085 putative methyltransferase; PFAM: Conserved hypothetical protein CHP00095; SPTR: Putative uncharacterized protein; TIGRFAM: methyltransferase; IMG reference gene:2505284518; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family YP_004626039.1 COGs: COG0669 Phosphopantetheine adenylyltransferase; InterPro IPR001980:IPR004820:IPR004821; KEGG: dak:DaAHT2_0546 pantetheine-phosphate adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; IMG reference gene:2505284519; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain YP_004626040.1 KEGG: dak:DaAHT2_0614 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284520; PFAM: Protein of unknown function (DUF3108) YP_004626041.1 COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: tko:TK2132 L-fuculose phosphate aldolase; PFAM: class II aldolase/adducin family protein; SPTR: Fuculose-1-phosphate aldolase; IMG reference gene:2505284521; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase YP_004626042.1 COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732:IPR014026:IPR014027:IPR017476; KEGG: ddf:DEFDS_0115 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; IMG reference gene:2505284523; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004626043.1 KEGG: sat:SYN_00762 hypothetical protein; SPTR: Hypothetical membrane protein; IMG reference gene:2505284524 YP_004626044.1 COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; InterPro IPR010916:IPR020565:IPR000807; KEGG: cbh:CLC_1599 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; PRIAM: Imidazoleglycerol-phosphate dehydratase; SPTR: Imidazoleglycerol-phosphate dehydratase; IMG reference gene:2505284525; PFAM: Imidazoleglycerol-phosphate dehydratase YP_004626045.1 KEGG: tpr:Tpau_3474 crotonyl-CoA reductase; SPTR: Crotonyl-CoA reductase; IMG reference gene:2505284526 YP_004626046.1 COGs: COG0151 Phosphoribosylamine-glycine ligase; InterProIPR020559:IPR000115:IPR020562:IPR020561:IPR 020560:IPR000031:IPR011761; KEGG: dal:Dalk_2057 phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: Phosphoribosylamine--glycine ligase., Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylamine/glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; IMG reference gene:2505284527; PFAM: Phosphoribosylglycinamide synthetase, N domain; AIR carboxylase; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; phosphoribosylaminoimidazole carboxylase, PurE protein YP_004626047.1 COGs: COG2510 membrane protein; InterPro IPR000620; KEGG: cce:Ccel_0424 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative uncharacterized protein; IMG reference gene:2505284528; PFAM: EamA-like transporter family YP_004626048.1 KEGG: dps:DP3093 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284529 YP_004626049.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR008089:IPR001509; KEGG: ckr:CKR_1837 hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Putative uncharacterized protein; IMG reference gene:2505284530; PFAM: NAD dependent epimerase/dehydratase family YP_004626050.1 COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; InterPro IPR005855:IPR000583:IPR001347:IPR017932; KEGG: dak:DaAHT2_2371 glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; SPTR: Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; IMG reference gene:2505284531; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_004626051.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017475:IPR017464:IPR003362; KEGG: dat:HRM2_19690 CpsE; PFAM: sugar transferase; SPTR: CpsE; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; IMG reference gene:2505284532; PFAM: Bacterial sugar transferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_004626052.1 COGs: COG0489 ATPase involved in chromosome partitioning; KEGG: dat:HRM2_19680 putative exopolysaccharide biosynthesis protein (protein-tyrosine kinase); SPTR: Putative exopolysaccharide biosynthesis protein (Protein-tyrosine kinase); IMG reference gene:2505284533 YP_004626053.1 COGs: COG3267 Type II secretory pathway component ExeA (predicted ATPase); InterPro IPR003593; KEGG: dak:DaAHT2_1740 AAA ATPase; SMART: AAA ATPase; SPTR: AAA ATPase; IMG reference gene:2505284534; PFAM: Archaeal ATPase YP_004626054.1 COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; InterPro IPR014345:IPR003856; KEGG: dat:HRM2_19670 GumC1; PFAM: lipopolysaccharide biosynthesis protein; SPTR: GumC1; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; IMG reference gene:2505284535; PFAM: Chain length determinant protein; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily YP_004626055.1 KEGG: dat:HRM2_19710 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284536; PFAM: Uncharacterized protein conserved in bacteria (DUF2320); TIGRFAM: uncharacterized protein, PEP-CTERM system associated YP_004626056.1 COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: dat:HRM2_19700 periplasmic polysaccharide export protein; PFAM: polysaccharide export protein; Soluble ligand binding domain; SPTR: Periplasmic polysaccharide export protein; IMG reference gene:2505284537; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; TIGRFAM: putative polysaccharide export protein, PEP-CTERM sytem-associated YP_004626057.1 InterPro IPR003615:IPR002711; KEGG: ddf:DEFDS_1462 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; IMG reference gene:2505284538; PFAM: HNH endonuclease YP_004626058.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR020050:IPR006638:IPR007197:IPR005244; KEGG: chy:CHY_1806 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; IMG reference gene:2505284539; PFAM: Radical SAM superfamily; TIGRFAM: putative menaquinone biosynthesis protein, SCO4494 family; radical SAM domain protein, CofH subfamily YP_004626059.1 COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR005743:IPR002205:IPR006691; KEGG: gbm:Gbem_0005 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; IMG reference gene:2505284540; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit YP_004626060.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: dak:DaAHT2_0323 hydroxyacylglutathione hydrolase; SPTR: Beta-lactamase-like; IMG reference gene:2505284541; PFAM: Metallo-beta-lactamase superfamily YP_004626061.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR013027:IPR000103; KEGG: dak:DaAHT2_0308 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin-disulfide reductase; IMG reference gene:2505284542; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004626062.1 COGs: COG3024 conserved hypothetical protein; InterPro IPR005584; KEGG: geo:Geob_2922 protein of unknown function DUF329; PFAM: protein of unknown function DUF329; SPTR: UPF0243 zinc-binding protein Geob_2922; IMG reference gene:2505284543; PFAM: Domain of unknown function (DUF329) YP_004626063.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: dol:Dole_1866 UspA domain-containing protein; PFAM: UspA domain-containing protein; SPTR: UspA domain protein; IMG reference gene:2505284544; PFAM: Universal stress protein family YP_004626064.1 COGs: COG0353 Recombinational DNA repair protein (RecF pathway); InterPro IPR000093:IPR006154:IPR015967:IPR006171; KEGG: dak:DaAHT2_1246 recombination protein RecR; PFAM: TOPRIM domain-containing protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain-containing protein; SPTR: RecR protein:TOPRIM; TIGRFAM: recombination protein RecR; IMG reference gene:2505284545; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR YP_004626065.1 COGs: COG0718 conserved hypothetical protein; InterPro IPR004401; KEGG: tjr:TherJR_0069 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: Putative uncharacterized protein; IMG reference gene:2505284546; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family YP_004626066.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR012763:IPR003593:IPR003959; KEGG: gme:Gmet_3422 DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; IMG reference gene:2505284547; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau YP_004626067.1 InterPro IPR008407; KEGG: mja:MJ1155.1 hypothetical protein; PFAM: branched-chain amino acid transport; SPTR: Uncharacterized protein MJ1155.1; IMG reference gene:2505284548; PFAM: Branched-chain amino acid transport protein (AzlD) YP_004626068.1 COGs: COG1296 branched-chain amino acid permease (azaleucine resistance); InterPro IPR011606; KEGG: ttj:TTHA0235 hypothetical protein; PFAM: AzlC family protein; SPTR: Transporter; IMG reference gene:2505284549; PFAM: AzlC protein; TIGRFAM: 4-azaleucine resistance probable transporter AzlC YP_004626069.1 InterPro IPR001387:IPR013096; KEGG: amc:MADE_03313 transcriptional regulator, Cro/CI family protein; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, Cro/CI family protein; IMG reference gene:2505284550; PFAM: Helix-turn-helix YP_004626070.1 COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR012840:IPR007197:IPR001989; KEGG: hth:HTH_1738 pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; SPTR: Pyruvate formate-lyase activating enzyme; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; IMG reference gene:2505284551; PFAM: Radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein YP_004626071.1 COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: wsu:WS1322 hypothetical protein; PFAM: peptidase M48 Ste24p; SPTR: Peptidase M48, Ste24p; IMG reference gene:2505284552; PFAM: Peptidase family M48 YP_004626072.1 COGs: COG0541 Signal recognition particle GTPase; InterProIPR004780:IPR003593:IPR013822:IPR000897:IPR 004125; KEGG: dol:Dole_2310 signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase; SPTR: Signal recognition particle protein; TIGRFAM: signal recognition particle protein; IMG reference gene:2505284553; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein YP_004626073.1 COGs: COG0228 Ribosomal protein S16; InterPro IPR000307; KEGG: csc:Csac_2157 30S ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; IMG reference gene:2505284554; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16 YP_004626074.1 COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR020627:IPR004088; KEGG: dba:Dbac_3306 RNA-binding protein (KH domain); SPTR: RNA-binding protein (KH domain); IMG reference gene:2505284555 YP_004626075.1 COGs: COG0806 RimM protein required for 16S rRNA processing; InterPro IPR011961:IPR002676:IPR007903; KEGG: syd:Syncc9605_0130 16S rRNA-processing protein RimM; PFAM: PRC-barrel domain protein; RimM protein; SPTR: 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; IMG reference gene:2505284556; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM YP_004626076.1 COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR011904:IPR000873:IPR020845; KEGG: dak:DaAHT2_2198 acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Acetate/CoA ligase; TIGRFAM: acetate/CoA ligase; IMG reference gene:2505284557; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase YP_004626077.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825; KEGG: dba:Dbac_1810 SufBD protein; PFAM: SufBD protein; SPTR: SufBD protein; IMG reference gene:2505284558; PFAM: Uncharacterized protein family (UPF0051) YP_004626078.1 COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003593:IPR003439; KEGG: deg:DehalGT_0696 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Iron-regulated ABC transporter, atp-binding protein, SufC; IMG reference gene:2505284559; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC YP_004626079.1 COGs: COG0787 Alanine racemase; InterPro IPR000821:IPR001608:IPR011079:IPR020622; KEGG: sfu:Sfum_0562 alanine racemase; PFAM: alanine racemase domain protein; PRIAM: Alanine racemase; SPTR: Alanine racemase; TIGRFAM: alanine racemase; manually curated; IMG reference gene:2505284560; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase YP_004626080.1 COGs: COG1826 Sec-independent protein secretion pathway components; InterPro IPR018448:IPR003369:IPR003998; KEGG: sul:SYO3AOP1_1474 twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Twin-arginine translocation protein, TatB subunit; TIGRFAM: twin-arginine translocation protein, TatB subunit; IMG reference gene:2505284561; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; twin arginine-targeting protein translocase TatB YP_004626081.1 COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR002033; KEGG: dsa:Desal_1554 sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; SPTR: Sec-independent protein translocase, TatC subunit; IMG reference gene:2505284562; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC YP_004626082.1 InterPro IPR020942:IPR002322:IPR011031; KEGG: tye:THEYE_A1056 cytochrome c3 chain A; PFAM: Cytochrome c, class III, conserved region; SPTR: Chain A, Cytochrome C3 From Desulfomicrobium Baculatus; IMG reference gene:2505284563; PFAM: Class III cytochrome C family YP_004626083.1 COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017900:IPR017896; KEGG: glo:Glov_3347 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; IMG reference gene:2505284564 YP_004626084.1 InterPro IPR011031; KEGG: glo:Glov_3348 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284565 YP_004626085.1 COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterProIPR000014:IPR003593:IPR013656:IPR013767:IPR 002078:IPR002197:IPR020441:IPR000700; KEGG: drt:Dret_0447 putative sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain containing protein; SPTR: Putative sigma54 specific transcriptional regulator; TIGRFAM: PAS sensor protein; IMG reference gene:2505284566; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box YP_004626086.1 KEGG: rpb:RPB_0594 apolipoprotein N-acyltransferase; IMG reference gene:2505284567 YP_004626087.1 COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: glo:Glov_3346 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: Polysulphide reductase NrfD; IMG reference gene:2505284568; PFAM: Polysulphide reductase, NrfD YP_004626088.1 COGs: COG0789 transcriptional regulator protein; InterPro IPR000551; KEGG: sfu:Sfum_0360 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Transcriptional regulator, MerR family; IMG reference gene:2505284569; PFAM: MerR family regulatory protein YP_004626089.1 COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: glo:Glov_3346 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: Polysulphide reductase NrfD; IMG reference gene:2505284570; PFAM: Polysulphide reductase, NrfD YP_004626090.1 COGs: COG0218 GTPase; InterPro IPR019987:IPR005225:IPR002917; KEGG: tte:TTE0628 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; SPTR: Probable GTP-binding protein engB; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; small GTP-binding protein; IMG reference gene:2505284571; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain YP_004626091.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR011704; KEGG: sus:Acid_7147 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; SPTR: ATPase associated with various cellular activities, AAA_5; IMG reference gene:2505284572; PFAM: AAA domain (dynein-related subfamily) YP_004626092.1 KEGG: gur:Gura_0167 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284573 YP_004626093.1 COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR000241:IPR002052:IPR004114; KEGG: pca:Pcar_2256 N6-adenine-specific DNA methylase; PFAM: RNA methylase; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: Putative RNA methylase; IMG reference gene:2505284574; PFAM: Putative RNA methylase family UPF0020 YP_004626094.1 COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: tte:TTE0716 RNA processing exonuclease; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Predicted exonuclease of the beta-lactamase fold involved in RNA processing; IMG reference gene:2505284575; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain YP_004626095.1 InterPro IPR009875; KEGG: ade:Adeh_2361 hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: Conserved region 2266; IMG reference gene:2505284576; PFAM: PilZ domain YP_004626096.1 COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627:IPR000045:IPR014032; KEGG: ppd:Ppro_0982 prepilin peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; PRIAM: Prepilin peptidase; SPTR: Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A; IMG reference gene:2505284577; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family YP_004626097.1 KEGG: dak:DaAHT2_0915 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284578 YP_004626098.1 KEGG: dak:DaAHT2_0914 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284579; PFAM: Cell division protein ZapA YP_004626099.1 COGs: COG1418 HD superfamily hydrolase; InterProIPR017705:IPR006675:IPR004087:IPR003607:IPR 018111:IPR006674:IPR004088; KEGG: sfu:Sfum_2578 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; SPTR: HDIG; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; IMG reference gene:2505284581; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG YP_004626100.1 COGs: COG1692 conserved hypothetical protein; InterPro IPR005235:IPR004843; KEGG: mta:Moth_1083 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; IMG reference gene:2505284582; TIGRFAM: metallophosphoesterase, MG_246/BB_0505 family YP_004626101.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481:IPR007167; KEGG: dal:Dalk_1640 ferric uptake regulator, Fur family; PFAM: FeoA family protein; ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; IMG reference gene:2505284583; PFAM: FeoA domain; Ferric uptake regulator family YP_004626102.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011946:IPR002104; KEGG: cpb:Cphamn1_1145 putative transcriptional regulator, TetR family; PFAM: integrase family protein; SPTR: Putative transcriptional regulator, TetR family; TIGRFAM: integron integrase; IMG reference gene:2505284584; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: integron integrase YP_004626103.1 KEGG: pyo:PY06876 hypothetical protein; SPTR: Putative uncharacterized protein PY06876; IMG reference gene:2505284585 YP_004626104.1 KEGG: pfh:PFHG_02988 conserved hypothetical protein; SPTR: Glycerophosphoryl diester phosphodiesterase; IMG reference gene:2505284586 YP_004626105.1 KEGG: tal:Thal_1286 type III restriction protein res subunit; SPTR: Integral membrane sensor signal transduction histidine kinase; IMG reference gene:2505284587 YP_004626106.1 KEGG: gla:GL50803_16039 hypothetical protein; IMG reference gene:2505284588 YP_004626107.1 COGs: COG3039 Transposase and inactivated derivatives IS5 family; InterPro IPR002559; KEGG: cyn:Cyan7425_5319 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: Transposase; IMG reference gene:2505284589; PFAM: Transposase DDE domain; Transposase domain (DUF772) YP_004626108.1 KEGG: pph:Ppha_2428 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284591 YP_004626109.1 InterPro IPR018841; KEGG: dat:HRM2_09460 predicted death-on-curing family protein; PFAM: Protein of unknown function DUF2442; SPTR: Putative uncharacterized protein; IMG reference gene:2505284592; PFAM: Protein of unknown function (DUF2442) YP_004626110.1 COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR004800:IPR000644:IPR001347; KEGG: dak:DaAHT2_1635 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; PRIAM: Arabinose-5-phosphate isomerase; SMART: CBS domain containing protein; SPTR: KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; IMG reference gene:2505284593; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein YP_004626111.1 COGs: COG0297 Glycogen synthase; InterPro IPR013534:IPR001296; KEGG: dak:DaAHT2_2094 starch synthase catalytic domain protein; PFAM: Starch synthase catalytic domain-containing protein; glycosyl transferase group 1; SPTR: Starch (Bacterial glycogen) synthase; IMG reference gene:2505284594; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type YP_004626112.1 COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB); InterPro IPR006316:IPR001926:IPR006653; KEGG: dau:Daud_1205 tryptophan synthase subunit beta; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; PRIAM: Tryptophan synthase; SPTR: Pyridoxal-phosphate dependent TrpB-like enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme; IMG reference gene:2505284595; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme YP_004626113.1 COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482:IPR003593:IPR000523:IPR001208; KEGG: dal:Dalk_5279 Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; SPTR: Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; IMG reference gene:2505284596; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein YP_004626114.1 COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: nam:NAMH_0449 inner membrane protein YbiR; PFAM: Citrate transporter; SPTR: Inner membrane protein YbiR; IMG reference gene:2505284597; PFAM: Citrate transporter YP_004626115.1 KEGG: bfo:BRAFLDRAFT_106578 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284598 YP_004626116.1 COGs: COG0585 conserved hypothetical protein; InterPro IPR001656:IPR020119:IPR011760; KEGG: tye:THEYE_A0547 tRNA pseudouridine synthase D; PFAM: tRNA pseudouridine synthase D TruD; SPTR: tRNA pseudouridine synthase D; IMG reference gene:2505284599; PFAM: tRNA pseudouridine synthase D (TruD); TIGRFAM: tRNA pseudouridine synthase, TruD family YP_004626117.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); InterProIPR000185:IPR011115:IPR011130:IPR011116:IPR 004027:IPR020937:IPR014018; KEGG: gme:Gmet_0951 preprotein translocase subunit SecA; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein; SPTR: Protein translocase subunit secA; TIGRFAM: preprotein translocase, SecA subunit; IMG reference gene:2505284600; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit YP_004626118.1 COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: dat:HRM2_30590 TolQ1; PFAM: MotA/TolQ/ExbB proton channel; SPTR: TolQ1; IMG reference gene:2505284601; PFAM: MotA/TolQ/ExbB proton channel family YP_004626119.1 COGs: COG2107 periplasmic solute-binding protein; KEGG: dde:Dde_0799 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284602; PFAM: Putative periplasminc binding protein (DUF178) YP_004626120.1 InterPro IPR019963:IPR000845; KEGG: dak:DaAHT2_0723 futalosine nucleosidase; PFAM: purine or other phosphorylase family 1; SPTR: Futalosine nucleosidase; TIGRFAM: futalosine nucleosidase; IMG reference gene:2505284603; PFAM: Phosphorylase superfamily; TIGRFAM: futalosine nucleosidase YP_004626121.1 COGs: COG0704 Phosphate uptake regulator; InterPro IPR008170:IPR002727:IPR018445; KEGG: dal:Dalk_1431 phosphate uptake regulator, PhoU; PFAM: PhoU family protein; Putitive phosphate transport regulator; SPTR: Phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; IMG reference gene:2505284604; PFAM: Protein of unknown function DUF47; PhoU domain; TIGRFAM: TIGR00153 family protein; phosphate transport system regulatory protein PhoU YP_004626122.1 COGs: COG1117 ABC-type phosphate transport system ATPase component; InterProIPR005670:IPR003593:IPR003439:IPR017871:IPR 015850; KEGG: dtu:Dtur_0477 phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; IMG reference gene:2505284605; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein YP_004626123.1 COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR005672:IPR000515; KEGG: gem:GM21_2504 phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; IMG reference gene:2505284606; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA YP_004626124.1 COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR011864:IPR000515; KEGG: pmu:PM0435 hypothetical protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Phosphate transport system permease protein pstC; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; IMG reference gene:2505284607; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC; phosphate ABC transporter, permease protein PstA YP_004626125.1 COGs: COG2768 Uncharacterized Fe-S center protein; InterPro IPR017900:IPR017896; KEGG: dol:Dole_2297 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; IMG reference gene:2505284608; PFAM: 4Fe-4S binding domain YP_004626126.1 COGs: COG1656 conserved hypothetical protein; InterPro IPR002782; KEGG: sfu:Sfum_0072 hypothetical protein; PFAM: protein of unknown function DUF82; SPTR: Putative uncharacterized protein; IMG reference gene:2505284609; PFAM: Protein of unknown function DUF82 YP_004626127.1 InterPro IPR019613; KEGG: ddf:DEFDS_0032 cobalt ABC transporter substrate-binding protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: Cobalt ABC transporter, substrate-binding protein; IMG reference gene:2505284610; PFAM: Nickel uptake substrate-specific transmembrane region YP_004626128.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: dal:Dalk_3805 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; IMG reference gene:2505284611; PFAM: Beta-lactamase YP_004626129.1 COGs: COG1281 Disulfide bond chaperones of the HSP33 family; InterPro IPR000397; KEGG: geo:Geob_0020 HSP33-like chaperonin; PFAM: Hsp33 protein; SPTR: 33 kDa chaperonin; IMG reference gene:2505284612; PFAM: Hsp33 protein YP_004626130.1 COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR000304:IPR004455; KEGG: dak:DaAHT2_1074 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; IMG reference gene:2505284613; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase YP_004626131.1 COGs: COG0165 Argininosuccinate lyase; InterPro IPR009049:IPR000362:IPR020557:IPR003031; KEGG: pca:Pcar_2418 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; IMG reference gene:2505284614; PFAM: Lyase; TIGRFAM: argininosuccinate lyase YP_004626132.1 COGs: COG0124 Histidyl-tRNA synthetase; InterProIPR015807:IPR002314:IPR004154:IPR004516:IPR 006195; KEGG: sat:SYN_02534 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; IMG reference gene:2505284615; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase YP_004626133.1 InterPro IPR002781; KEGG: sfu:Sfum_2931 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Putative uncharacterized protein; IMG reference gene:2505284616; PFAM: Sulfite exporter TauE/SafE YP_004626134.1 InterPro IPR011752:IPR009875; KEGG: scl:sce5854 putative type IV pilus assembly protein; PFAM: type IV pilus assembly PilZ; SPTR: Putative type IV pilus assembly protein; IMG reference gene:2505284617; PFAM: PilZ domain; TIGRFAM: Myxococcus xanthus paralogous domain TIGR02266 YP_004626135.1 KEGG: dak:DaAHT2_2538 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284618 YP_004626136.1 KEGG: sat:SYN_00587 hypothetical protein; SPTR: Hypothetical membrane protein; IMG reference gene:2505284619; PFAM: ATP synthase I chain YP_004626137.1 COGs: COG0356 F0F1-type ATP synthase subunit a; InterPro IPR000568; KEGG: sfu:Sfum_1605 ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; SPTR: ATP synthase subunit a; TIGRFAM: ATP synthase F0, A subunit; IMG reference gene:2505284620; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) YP_004626138.1 InterPro IPR005953:IPR002379:IPR020537:IPR000454; KEGG: dds:Ddes_2255 ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; SPTR: ATP synthase subunit c; TIGRFAM: ATP synthase F0, C subunit; IMG reference gene:2505284621; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c YP_004626139.1 COGs: COG1729 conserved hypothetical protein; InterPro IPR014162:IPR019734:IPR013026; KEGG: gbm:Gbem_3515 tol-pal system protein YbgF; SMART: Tetratricopeptide repeat; SPTR: Tol-pal system protein YbgF; TIGRFAM: tol-pal system protein YbgF; IMG reference gene:2505284622; PFAM: Tetratricopeptide repeat; TIGRFAM: tol-pal system protein YbgF YP_004626140.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: gur:Gura_2130 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor; IMG reference gene:2505284623; PFAM: Receptor family ligand binding region YP_004626141.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: sti:Sthe_0513 heat shock protein HSP20; SPTR: Heat shock protein Hsp20; IMG reference gene:2505284624; PFAM: Hsp20/alpha crystallin family YP_004626142.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR011908:IPR002201; KEGG: tye:THEYE_A0945 lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; SPTR: Lipopolysaccharide heptosyltransferase II; TIGRFAM: lipopolysaccharide heptosyltransferase I; IMG reference gene:2505284625; PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase II YP_004626143.1 COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR006543:IPR006549:IPR005834; KEGG: nde:NIDE3031 bifunctional lipopolysaccharide heptosyltransferase II/D, D-heptose 1,7-bisphosphate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; PRIAM: Histidinol-phosphatase; SPTR: Putative uncharacterized protein; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; IMG reference gene:2505284626; PFAM: Polynucleotide kinase 3 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family domain; histidinol-phosphatase YP_004626144.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR011910:IPR002201; KEGG: pna:Pnap_0149 lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; SPTR: ADP-heptose--LPS heptosyltransferase II (Modular protein); TIGRFAM: lipopolysaccharide heptosyltransferase II; IMG reference gene:2505284627; PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II YP_004626145.1 COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; InterPro IPR006063:IPR006062; KEGG: pca:Pcar_2685 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; IMG reference gene:2505284628; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_004626146.1 COGs: COG0557 Exoribonuclease R; InterPro IPR001900; KEGG: dak:DaAHT2_0510 exoribonuclease II; PFAM: ribonuclease II; SPTR: Exoribonuclease II; IMG reference gene:2505284629; PFAM: RNB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases YP_004626147.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160:IPR001789; KEGG: dak:DaAHT2_1538 response regulator receiver modulated diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver; SPTR: Response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; IMG reference gene:2505284630; PFAM: Response regulator receiver domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004626148.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086:IPR020084:IPR020476; KEGG: geo:Geob_3053 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; IMG reference gene:2505284631; PFAM: NUDIX domain YP_004626149.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760:IPR020583:IPR020550; KEGG: dak:DaAHT2_0139 inositol monophosphatase; PFAM: inositol monophosphatase; SPTR: Inositol monophosphatase; IMG reference gene:2505284632; PFAM: Inositol monophosphatase family YP_004626150.1 COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; InterPro IPR005251:IPR011559:IPR000649; KEGG: pca:Pcar_2170 aIF-2BI family translation initiation factor; PFAM: initiation factor 2B related; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; SPTR: Methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; IMG reference gene:2505284633; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase YP_004626151.1 COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); InterPro IPR004413:IPR006075:IPR018027:IPR017958; KEGG: ddf:DEFDS_1934 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B; PFAM: GatB region; Asn/Gln amidotransferase; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; IMG reference gene:2505284634; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit YP_004626152.1 COGs: COG2703 Hemerythrin; InterPro IPR012827:IPR012312:IPR016131; KEGG: tmz:Tmz1t_1809 hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; SPTR: Hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; IMG reference gene:2505284635; PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain YP_004626153.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004527:IPR020058:IPR001412:IPR020060; KEGG: sfu:Sfum_1366 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: Glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; IMG reference gene:2505284636; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_004626154.1 COGs: COG1355 dioxygenase; InterPro IPR002737; KEGG: geo:Geob_3013 protein of unknown function DUF52; PFAM: protein of unknown function DUF52; SPTR: Putative uncharacterized protein; IMG reference gene:2505284637; PFAM: Memo-like protein YP_004626155.1 COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: dak:DaAHT2_1933 cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; SPTR: Cell shape determining protein, MreB/Mrl family; TIGRFAM: cell shape determining protein, MreB/Mrl family; IMG reference gene:2505284638; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family YP_004626156.1 COGs: COG1792 Cell shape-determining protein; InterPro IPR005223:IPR007221; KEGG: gur:Gura_2860 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; IMG reference gene:2505284639; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC YP_004626157.1 KEGG: neu:NE2068 rod shape-determining MreD transmembrane protein; SPTR: Possible rod shape-determining MreD transmembrane protein; IMG reference gene:2505284640 YP_004626158.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR017790:IPR005311:IPR001460; KEGG: dat:HRM2_35240 MrdA; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: MrdA; TIGRFAM: penicillin-binding protein 2; IMG reference gene:2505284641; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2 YP_004626159.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: sat:SYN_00550 rod shape-determining protein; PFAM: cell cycle protein; SPTR: Rod shape-determining protein RodA; IMG reference gene:2505284642; PFAM: Cell cycle protein YP_004626160.1 InterPro IPR002146; KEGG: dak:DaAHT2_1901 H+transporting two-sector ATPase B/B' subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: H+transporting two-sector ATPase B/B' subunit; IMG reference gene:2505284643; PFAM: ATP synthase B/B' CF(0) YP_004626161.1 COGs: COG0711 F0F1-type ATP synthase subunit b; InterPro IPR005864:IPR002146; KEGG: dak:DaAHT2_1900 H+transporting two-sector ATPase B/B' subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: H+-transporting two-sector ATPase, B/B' subunit; TIGRFAM: ATP synthase F0, B subunit; IMG reference gene:2505284644; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b YP_004626162.1 COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); InterPro IPR000711; KEGG: dps:DP0831 F0F1 ATP synthase subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; SPTR: ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; IMG reference gene:2505284645; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit YP_004626163.1 COGs: COG0056 F0F1-type ATP synthase alpha subunit; InterProIPR005294:IPR004100:IPR000194:IPR000793:IPR 020003; KEGG: dol:Dole_0601 F0F1 ATP synthase subunit alpha; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SPTR: ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; IMG reference gene:2505284646; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit YP_004626164.1 COGs: COG0224 F0F1-type ATP synthase gamma subunit; InterPro IPR000131; KEGG: dak:DaAHT2_1897 ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; SPTR: ATP synthase F1, gamma subunit; TIGRFAM: ATP synthase F1, gamma subunit; IMG reference gene:2505284647; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit YP_004626165.1 COGs: COG0055 F0F1-type ATP synthase beta subunit; InterProIPR005722:IPR004100:IPR000194:IPR000793:IPR 020003; KEGG: sfu:Sfum_2582 F0F1 ATP synthase subunit beta; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SPTR: ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; IMG reference gene:2505284648; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit YP_004626166.1 COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); InterPro IPR001469:IPR020546:IPR020547; KEGG: dak:DaAHT2_1895 ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like; SPTR: ATP synthase F1, epsilon subunit; TIGRFAM: ATP synthase F1, epsilon subunit; IMG reference gene:2505284649; PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; ATP synthase, Delta/Epsilon chain, long alpha-helix domain; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria) YP_004626167.1 COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR005835; KEGG: dae:Dtox_0205 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucosamine-1-phosphate N-acetyltransferase; SPTR: Bifunctional protein glmU; IMG reference gene:2505284650; PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase YP_004626168.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: rmr:Rmar_1290 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: tRNA/rRNA methyltransferase (SpoU); IMG reference gene:2505284651; PFAM: SpoU rRNA Methylase family YP_004626169.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: cbc:CbuK_0640 hypothetical ATPase; SPTR: Hypothetical ATPase; IMG reference gene:2505284652 YP_004626170.1 InterPro IPR014082; KEGG: mru:mru_1188 CRISPR-associated protein TIGR02710 family; SPTR: CRISPR-associated protein TIGR02710 family; TIGRFAM: CRISPR-associated protein, TIGR02710 family; IMG reference gene:2505284653; PFAM: CRISPR-associated protein (Cas_Cas02710); TIGRFAM: CRISPR-associated protein, TIGR02710 family YP_004626171.1 COGs: COG1604 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR010172:IPR005537; KEGG: sat:SYN_02247 putative cytoplasmic protein; PFAM: protein of unknown function DUF324; SPTR: Hypothetical cytosolic protein; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; IMG reference gene:2505284654; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr6 YP_004626172.1 InterPro IPR010160; KEGG: sat:SYN_02248 putative cytoplasmic protein; PFAM: CRISPR-associated protein TM1791.1; SPTR: Hypothetical cytosolic protein; TIGRFAM: CRISPR-associated protein, Cmr5 family; IMG reference gene:2505284655; PFAM: CRISPR-associated protein (Cas_Cmr5); TIGRFAM: CRISPR type III-B/RAMP module-associated protein Cmr5 YP_004626173.1 COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR013410:IPR005537; KEGG: sat:SYN_02249 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Hypothetical exported protein; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; IMG reference gene:2505284656; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr4 YP_004626174.1 COGs: COG4634 conserved hypothetical protein; KEGG: xfa:XF2029 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284657 YP_004626175.1 COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: ava:Ava_2493 hypothetical protein; PFAM: protein of unknown function DUF433; SPTR: Putative uncharacterized protein; IMG reference gene:2505284658; PFAM: Protein of unknown function (DUF433) YP_004626176.1 InterPro IPR019117; KEGG: sat:SYN_02250 putative cytoplasmic protein; PFAM: CRISPR-associated protein, Cmr3; SPTR: Hypothetical cytosolic protein; IMG reference gene:2505284659; PFAM: CRISPR-associated protein (Cas_Cmr3); TIGRFAM: CRISPR type III-B/RAMP module-associated protein Cmr3 YP_004626177.1 COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR013407; KEGG: sat:SYN_02251 HD superfamily hydrolase; SPTR: Hydrolase of the HD superfamily; TIGRFAM: CRISPR-associated protein, Crm2 family; IMG reference gene:2505284660; PFAM: CRISPR-associated protein; TIGRFAM: CRISPR-associated protein Cas10/Cmr2, subtype III-B YP_004626178.1 COGs: COG1367 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR007522:IPR005537; KEGG: app:CAP2UW1_2204 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; IMG reference gene:2505284661; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr1 YP_004626179.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: dol:Dole_3137 putative GTP-binding protein; SPTR: Putative GTP-binding protein; IMG reference gene:2505284662 YP_004626180.1 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR021127; KEGG: cph:Cpha266_2060 CRISPR-associated Cas2 family protein; SPTR: CRISPR-associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2; IMG reference gene:2505284663; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2 YP_004626181.1 InterPro IPR019734:IPR001440:IPR013026; KEGG: sfu:Sfum_1354 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; IMG reference gene:2505284664 YP_004626182.1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729; KEGG: dae:Dtox_2974 CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; SPTR: CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; IMG reference gene:2505284665; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1 YP_004626183.1 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR021127; KEGG: ava:Ava_4177 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas2; IMG reference gene:2505284666; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2 YP_004626184.1 KEGG: nhl:Nhal_2827 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284667; PFAM: Uncharacterized conserved protein (DUF2276); TIGRFAM: CRISPR-associated endoribonuclease Cas6 YP_004626185.1 COGs: COG1606 ATP-utilizing protein of the PP-loop superfamily; InterPro IPR005232:IPR001962; KEGG: ate:Athe_1202 PP-loop domain protein; PFAM: asparagine synthase; SPTR: PP-loop domain protein; IMG reference gene:2505284668; PFAM: Asparagine synthase; TIGRFAM: TIGR00268 family protein YP_004626186.1 COGs: COG1900 conserved hypothetical protein; InterPro IPR002708; KEGG: dal:Dalk_1368 protein of unknown function DUF39; PFAM: protein of unknown function DUF39; SPTR: Putative uncharacterized protein; IMG reference gene:2505284669; PFAM: Domain of unknown function DUF39 YP_004626187.1 COGs: COG0517 FOG: CBS domain; InterPro IPR000644; KEGG: dak:DaAHT2_0620 putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: Putative signal transduction protein with CBS domains; IMG reference gene:2505284670; PFAM: CBS domain YP_004626188.1 COGs: COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); InterPro IPR008275:IPR002731:IPR018709; KEGG: tye:THEYE_A0388 (R)-2-hydroxyglutaryl-CoA dehydratase activator-related protein; PFAM: ATPase BadF/BadG/BcrA/BcrD type; Protein of unknown function DUF2229, CoA enzyme activase; SPTR: Putative uncharacterized protein; TIGRFAM: CoA-substrate-specific enzyme activase; IMG reference gene:2505284671; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; BadF/BadG/BcrA/BcrD ATPase family; CoA enzyme activase uncharacterised domain (DUF2229); TIGRFAM: CoA-substrate-specific enzyme activase, putative YP_004626189.1 InterPro IPR000086; KEGG: drm:Dred_1568 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; IMG reference gene:2505284673; PFAM: NUDIX domain YP_004626190.1 InterPro IPR002716; KEGG: pmx:PERMA_1863 PIN domain protein; PFAM: PilT protein domain protein; SPTR: PIN domain protein; IMG reference gene:2505284674; PFAM: PIN domain YP_004626191.1 KEGG: pmx:PERMA_1862 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2505284675 YP_004626192.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013217; KEGG: mba:Mbar_A0730 hypothetical protein; PFAM: Methyltransferase type 12; SPTR: Putative uncharacterized protein; IMG reference gene:2505284676; PFAM: Methyltransferase domain YP_004626193.1 InterPro IPR004919:IPR018651; KEGG: tai:Taci_1486 protein of unknown function DUF262; PFAM: protein of unknown function DUF262; Protein of unknown function DUF2081; SPTR: Putative uncharacterized protein; IMG reference gene:2505284677; PFAM: Uncharacterized conserved protein (DUF2081); Protein of unknown function DUF262 YP_004626194.1 KEGG: kpe:KPK_4939 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284678 YP_004626195.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011946:IPR002104; KEGG: cpb:Cphamn1_1145 putative transcriptional regulator, TetR family; PFAM: integrase family protein; SPTR: Putative transcriptional regulator, TetR family; TIGRFAM: integron integrase; IMG reference gene:2505284679; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: integron integrase YP_004626196.1 COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterProIPR006311:IPR013352:IPR004108:IPR003149:IPR 006058:IPR017900:IPR017909:IPR017896; KEGG: pth:PTH_0668 iron only hydrogenase large subunit; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; PRIAM: Ferredoxin hydrogenase; SPTR: Iron only hydrogenase large subunit, C-terminal domain; TIGRFAM: hydrogenase, Fe-only; IMG reference gene:2505284680; PFAM: Iron only hydrogenase large subunit, C-terminal domain; Iron hydrogenase small subunit; TIGRFAM: hydrogenase, Fe-only YP_004626197.1 InterPro IPR000850; KEGG: dol:Dole_1146 adenylate kinase-like kinase; PFAM: adenylate kinase; SPTR: Adenylate kinase; IMG reference gene:2505284681; PFAM: Adenylate kinase YP_004626198.1 COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390:IPR003593:IPR013822:IPR000897; KEGG: sfu:Sfum_2460 signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; SPTR: Cell division transporter substrate-binding protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; IMG reference gene:2505284682; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_004626199.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR005786:IPR001544:IPR018300; KEGG: dak:DaAHT2_2175 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain-amino-acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; IMG reference gene:2505284683; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II YP_004626200.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078; KEGG: aae:aq_164 NtrC family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; SPTR: Transcriptional regulator (NtrC family); IMG reference gene:2505284684; PFAM: Sigma-54 interaction domain YP_004626201.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: nde:NIDE3338 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC-type multidrug transport system, ATPase component; manually curated; IMG reference gene:2505284686; PFAM: ABC transporter YP_004626202.1 InterPro IPR013525:IPR000412; KEGG: nde:NIDE3335 putative ABC transporter ATP-binding and permease; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; IMG reference gene:2505284687; PFAM: ABC-2 type transporter YP_004626203.1 COGs: COG0102 Ribosomal protein L13; InterPro IPR005823:IPR005822; KEGG: trq:TRQ2_1346 50S ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; IMG reference gene:2505284688; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type YP_004626204.1 COGs: COG0103 Ribosomal protein S9; InterPro IPR000754:IPR020574; KEGG: dak:DaAHT2_0353 ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: 30S ribosomal protein S9; IMG reference gene:2505284689; PFAM: Ribosomal protein S9/S16 YP_004626205.1 COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; InterPro IPR000706:IPR000534:IPR012280; KEGG: tye:THEYE_A1632 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; IMG reference gene:2505284690; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form YP_004626206.1 COGs: COG0101 Pseudouridylate synthase; InterPro IPR001406:IPR020097; KEGG: sat:SYN_01395 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; SPTR: tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; IMG reference gene:2505284691; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_004626207.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839:IPR004838:IPR001176; KEGG: tye:THEYE_A0342 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: Aspartate aminotransferase; IMG reference gene:2505284692; PFAM: Aminotransferase class I and II YP_004626208.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: noc:Noc_1269 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; IMG reference gene:2505284693; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004626209.1 KEGG: rip:RIEPE_0519 glutamate racemase; SPTR: Glutamate racemase; IMG reference gene:2505284694 YP_004626210.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR001789:IPR003660:IPR 004358:IPR005467; KEGG: dba:Dbac_1409 PAS/PAC sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: PAS/PAC sensor hybrid histidine kinase; IMG reference gene:2505284695; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004626211.1 COGs: COG0060 Isoleucyl-tRNA synthetase; InterProIPR002301:IPR002300:IPR013155:IPR010663:IPR 001412:IPR015905; KEGG: gme:Gmet_0351 isoleucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; IMG reference gene:2505284696; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Zinc finger found in FPG and IleRS; TIGRFAM: isoleucyl-tRNA synthetase YP_004626212.1 COGs: COG0597 Lipoprotein signal peptidase; InterPro IPR001872; KEGG: tkm:TK90_2555 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; SPTR: Lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; IMG reference gene:2505284697; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase YP_004626213.1 KEGG: dba:Dbac_0689 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284698 YP_004626214.1 COGs: COG0234 Co-chaperonin GroES (HSP10); InterPro IPR020818:IPR018369:IPR001476; KEGG: dol:Dole_0549 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; IMG reference gene:2505284699; PFAM: Chaperonin 10 Kd subunit YP_004626215.1 COGs: COG0459 Chaperonin GroEL (HSP60 family); InterPro IPR001844:IPR002423:IPR018370; KEGG: mxa:MXAN_4895 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin 2; TIGRFAM: chaperonin GroEL; IMG reference gene:2505284700; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_004626216.1 KEGG: sfu:Sfum_3889 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284701 YP_004626217.1 COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterPro IPR001915:IPR013026; KEGG: sat:SYN_03195 zinc metalloprotease; PFAM: peptidase M48 Ste24p; SPTR: Zinc metalloprotease; IMG reference gene:2505284702; PFAM: Peptidase family M48 YP_004626218.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR004540:IPR005225:IPR000795:IPR004161:IPR 005517:IPR000640; KEGG: sfu:Sfum_1044 translation elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Translation elongation factor 2 (EF-2/EF-G); TIGRFAM: translation elongation factor G; small GTP-binding protein; IMG reference gene:2505284703; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004626219.1 COGs: COG0344 membrane protein; InterPro IPR020788:IPR003811; KEGG: dps:DP0538 hypothetical protein; PFAM: protein of unknown function DUF205; SPTR: Glycerol-3-phosphate acyltransferase; IMG reference gene:2505284704; PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase YP_004626220.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505284705; PFAM: Transposase IS200 like YP_004626221.1 COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: aco:Amico_1908 transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; SPTR: Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; IMG reference gene:2505284706; PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein YP_004626222.1 COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR005117:IPR006067:IPR006066:IPR017220; KEGG: mtp:Mthe_0744 nitrite and sulphite reductase 4Fe-4S region; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; SPTR: Nitrite reductase (NAD(P)H); IMG reference gene:2505284707; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain YP_004626223.1 KEGG: dps:DP0114 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284708 YP_004626224.1 COGs: COG4923 conserved hypothetical protein; KEGG: oan:Oant_1073 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284709; PFAM: Protein of unknown function (DUF429) YP_004626225.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594; KEGG: dba:Dbac_2230 hypothetical protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: UBA/THIF-type NAD/FAD binding protein; IMG reference gene:2505284710; PFAM: ThiF family YP_004626226.1 COGs: COG2122 conserved hypothetical protein; InterPro IPR003374:IPR007183; KEGG: dal:Dalk_4001 ApbE family lipoprotein; PFAM: ApbE family lipoprotein; SPTR: ApbE family lipoprotein; IMG reference gene:2505284711; PFAM: ApbE family YP_004626227.1 COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006269:IPR006218; KEGG: dps:DP0765 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-8-phosphooctulonate synthase; SPTR: 3-deoxy-8-phosphooctulonate synthase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; IMG reference gene:2505284712; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; phospho-2-dehydro-3-deoxyheptonate aldolase YP_004626228.1 COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023:IPR006549; KEGG: sfu:Sfum_2073 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PRIAM: 3-deoxy-manno-octulosonate-8-phosphatase; SPTR: Phosphatase kdsC; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; IMG reference gene:2505284713; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family YP_004626229.1 InterPro IPR010664; KEGG: sat:SYN_00948 hypothetical protein; PFAM: protein of unknown function DUF1239; SPTR: Hypothetical membrane protein; IMG reference gene:2505284714; PFAM: Protein of unknown function (DUF1239) YP_004626230.1 COGs: COG1934 conserved hypothetical protein; InterPro IPR014340:IPR005653; KEGG: gme:Gmet_1281 OstA-like protein; PFAM: OstA family protein; SPTR: OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; IMG reference gene:2505284715; PFAM: OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA YP_004626231.1 COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: glo:Glov_2167 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; IMG reference gene:2505284716; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_004626232.1 COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: sat:SYN_00945 RNA polymerase sigma-54 factor; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; SPTR: RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; IMG reference gene:2505284717; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54, DNA binding domain; Sigma-54 factor, core binding domain; TIGRFAM: RNA polymerase sigma-54 factor YP_004626233.1 COGs: COG1544 Ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: dal:Dalk_1360 sigma 54 modulation protein/ribosomal protein S30EA; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; SPTR: Sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal subunit interface protein; IMG reference gene:2505284718; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein YP_004626234.1 COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178; KEGG: dat:HRM2_27890 PtsN2; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: PtsN2; IMG reference gene:2505284719; PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_004626235.1 COGs: COG1660 P-loop-containing kinase; InterPro IPR005337; KEGG: dal:Dalk_1358 hypothetical protein; SPTR: UPF0042 nucleotide-binding protein Dalk_1358; IMG reference gene:2505284720; PFAM: P-loop ATPase protein family YP_004626236.1 COGs: COG2893 Phosphotransferase system mannose/fructose-specific component IIA; InterPro IPR004701; KEGG: dal:Dalk_1357 PTS system fructose subfamily IIA component; PFAM: PTS system fructose subfamily IIA component; SPTR: PTS system fructose subfamily IIA component; IMG reference gene:2505284721; PFAM: PTS system fructose IIA component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA component YP_004626237.1 COGs: COG0456 Acetyltransferase; InterPro IPR006464:IPR000182; KEGG: tpd:Teth39_1743 ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; IMG reference gene:2505284722; PFAM: Acetyltransferase (GNAT) family; TIGRFAM: ribosomal-protein-alanine acetyltransferase YP_004626238.1 COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR006424:IPR020828:IPR020829:IPR020830:IPR 010916:IPR020832:IPR020831; KEGG: dak:DaAHT2_2095 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; IMG reference gene:2505284723; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_004626239.1 COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192:IPR008279; KEGG: dak:DaAHT2_2096 pyruvate phosphate dikinase PEP/pyruvate-binding protein; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; SPTR: Pyruvate phosphate dikinase PEP/pyruvate-binding protein; IMG reference gene:2505284724; PFAM: PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain YP_004626240.1 COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020828:IPR020829:IPR020830:IPR020832; KEGG: dol:Dole_0222 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase (Phosphorylating); manually curated; IMG reference gene:2505284725; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_004626241.1 COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR001576:IPR015911; KEGG: dak:DaAHT2_0036 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; IMG reference gene:2505284726; PFAM: Phosphoglycerate kinase YP_004626242.1 COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652:IPR020861; KEGG: gbm:Gbem_2338 triosephosphate isomerase; PFAM: triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; IMG reference gene:2505284727; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase YP_004626243.1 COGs: COG1314 Preprotein translocase subunit SecG; InterPro IPR004692; KEGG: dat:HRM2_27940 SecG; PFAM: Preprotein translocase SecG subunit; SPTR: SecG; TIGRFAM: preprotein translocase, SecG subunit; IMG reference gene:2505284728; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_004626244.1 COGs: COG0373 Glutamyl-tRNA reductase; InterProIPR000343:IPR015895:IPR006151:IPR015896:IPR 018214; KEGG: dal:Dalk_3439 glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; SPTR: Glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; IMG reference gene:2505284729; PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase YP_004626245.1 COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR017562:IPR002541; KEGG: gme:Gmet_3232 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB; IMG reference gene:2505284730; PFAM: Cytochrome C assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB YP_004626246.1 COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: slp:Slip_1776 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SPTR: Putative uncharacterized protein; IMG reference gene:2505284731; PFAM: HDOD domain YP_004626247.1 COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646:IPR013099; KEGG: dal:Dalk_3538 ion transport 2 domain protein; PFAM: Ion transport 2 domain protein ; pentapeptide repeat protein; SPTR: Ion transport 2 domain protein; IMG reference gene:2505284732; PFAM: Pentapeptide repeats (8 copies); Ion channel YP_004626248.1 COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR011894:IPR019752; KEGG: sat:SYN_00157 pyruvate:ferredoxin oxidoreductase gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; SPTR: Pyruvate:ferredoxin oxidoreductase gamma subunit; TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; IMG reference gene:2505284733; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family YP_004626249.1 COGs: COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase delta subunit; InterPro IPR011898:IPR017900:IPR017896; KEGG: sfu:Sfum_2793 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; SPTR: Pyruvate ferredoxin oxidoreductase, delta subunit; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; IMG reference gene:2505284734; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family YP_004626250.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880; KEGG: sat:SYN_00155 pyruvate:ferredoxin oxidoreductase alpha subunit; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SPTR: Pyruvate:ferredoxin oxidoreductase alpha subunit; IMG reference gene:2505284735; PFAM: domain YP_004626251.1 COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: sfu:Sfum_2795 thiamine pyrophosphate binding domain-containing protein; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; SPTR: Pyruvate ferredoxin oxidoreductase, beta subunit; IMG reference gene:2505284736; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004626252.1 COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterPro IPR010047:IPR004137; KEGG: pca:Pcar_0057 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; PRIAM: Carbon-monoxide dehydrogenase (acceptor); SPTR: Carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; IMG reference gene:2505284738; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit YP_004626253.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: pca:Pcar_0056 response regulator; PFAM: LytTr DNA-binding region; SPTR: Response regulator of the LytR/AlgR family; IMG reference gene:2505284739; PFAM: LytTr DNA-binding domain YP_004626254.1 COGs: COG0466 ATP-dependent Lon protease; InterProIPR004815:IPR003111:IPR003593:IPR003959:IPR 008268:IPR001984; KEGG: dth:DICTH_1451 ATP-dependent protease La; PFAM: AAA ATPase central domain protein; peptidase S16 lon domain protein; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; AAA ATPase; SPTR: Lon protease; TIGRFAM: ATP-dependent protease La; IMG reference gene:2505284741; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La YP_004626255.1 COGs: COG1273 conserved hypothetical protein; InterPro IPR009187:IPR006164; KEGG: sth:STH1798 hypothetical protein; PFAM: Ku domain protein; SMART: Ku domain protein; SPTR: Probable DNA repair protein STH1798; TIGRFAM: Ku protein; IMG reference gene:2505284742; PFAM: Ku70/Ku80 beta-barrel domain; TIGRFAM: Ku protein, prokaryotic YP_004626256.1 COGs: COG1793 ATP-dependent DNA ligase; InterPro IPR014146:IPR012310:IPR012309:IPR016059; KEGG: mta:Moth_1488 ATP dependent DNA ligase, central; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; SPTR: ATP dependent DNA ligase, central; TIGRFAM: DNA polymerase LigD, ligase domain protein; IMG reference gene:2505284743; PFAM: ATP dependent DNA ligase domain; ATP dependent DNA ligase C terminal region; TIGRFAM: DNA polymerase LigD, ligase domain YP_004626257.1 COGs: COG0039 Malate/lactate dehydrogenase; InterPro IPR011275:IPR001236:IPR001557; KEGG: dak:DaAHT2_0941 malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; SPTR: Malate dehydrogenase, NAD-dependent; TIGRFAM: malate dehydrogenase, NAD-dependent; IMG reference gene:2505284744; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent YP_004626258.1 InterPro IPR015011; KEGG: sfu:Sfum_0182 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284745; PFAM: Archaea-specific editing domain of threonyl-tRNA synthetase YP_004626259.1 InterPro IPR005243; KEGG: rsq:Rsph17025_1409 hypothetical protein; SPTR: Redox-active disulfide protein 2; TIGRFAM: redox-active disulfide protein 2; IMG reference gene:2505284747; TIGRFAM: small redox-active disulfide protein 2 YP_004626260.1 InterPro IPR001845:IPR001808; KEGG: gct:GC56T3_3243 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; regulatory protein Crp; SPTR: Transcriptional regulator (ArsR family); IMG reference gene:2505284749; PFAM: Bacterial regulatory protein, arsR family YP_004626261.1 KEGG: oan:Oant_3315 L-2-amino-thiazoline-4-carboxylic acid hydrolase; SPTR: L-2-amino-thiazoline-4-carboxylic acid hydrolase; IMG reference gene:2505284750 YP_004626262.1 COGs: COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; InterPro IPR003203; KEGG: ddf:DEFDS_2051 adenosylcobinamide-phosphate guanylyltransferase; PFAM: cobalbumin biosynthesis protein; PRIAM: Adenosylcobinamide-phosphate guanylyltransferase; SPTR: Adenosylcobinamide-phosphate guanylyltransferase; IMG reference gene:2505284751; PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase YP_004626263.1 COGs: COG3894 Uncharacterized metal-binding protein; InterPro IPR001041; KEGG: dak:DaAHT2_1982 ferredoxin; PFAM: ferredoxin; SPTR: Ferredoxin; IMG reference gene:2505284752; PFAM: 2Fe-2S iron-sulfur cluster binding domain YP_004626264.1 COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR000489; KEGG: dak:DaAHT2_1991 dihydropteroate synthase DhpS; PFAM: dihydropteroate synthase DHPS; SPTR: Dihydropteroate synthase DHPS; IMG reference gene:2505284753; PFAM: Pterin binding enzyme YP_004626265.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505284754; PFAM: Transposase IS200 like YP_004626266.1 COGs: COG0701 permease; InterPro IPR005524; KEGG: pru:PRU_1127 putative permease; PFAM: permease; SPTR: Putative permease; IMG reference gene:2505284755; PFAM: Predicted permease YP_004626267.1 KEGG: dvm:DvMF_2257 methyl-accepting chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis sensory transducer; IMG reference gene:2505284756 YP_004626268.1 InterPro IPR000415; KEGG: dat:HRM2_20180 hypothetical protein; PFAM: nitroreductase; SPTR: Putative dinucleotide-utilizing biosynthesis family protein (Molybdopterin and thiamine biosynthesis family protein); IMG reference gene:2505284758; PFAM: Nitroreductase family YP_004626269.1 InterPro IPR013424:IPR011449; KEGG: tbd:Tbd_0194 hypothetical protein; PFAM: protein of unknown function DUF1555; SPTR: Putative uncharacterized protein; IMG reference gene:2505284759; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM putative exosortase interaction domain YP_004626270.1 COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR006158:IPR007197; KEGG: gbm:Gbem_1024 Radical SAM domain protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; IMG reference gene:2505284760; PFAM: Radical SAM superfamily; B12 binding domain YP_004626271.1 KEGG: dba:Dbac_2228 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284762 YP_004626272.1 COGs: COG1402 Uncharacterized protein putative amidase; InterPro IPR003785; KEGG: sfu:Sfum_0661 creatininase; PFAM: Creatininase; SPTR: Creatininase; IMG reference gene:2505284763; PFAM: Creatinine amidohydrolase YP_004626273.1 InterPro IPR013740:IPR017937:IPR017936; KEGG: dps:DP3083 cytochrome c biogenesis protein (TlpA); PFAM: Redoxin domain protein; SPTR: Related to cytochrome c biogenesis protein (TlpA); IMG reference gene:2505284764; PFAM: Redoxin YP_004626274.1 COGs: COG0709 Selenophosphate synthase; InterPro IPR004536:IPR000728:IPR010918; KEGG: adg:Adeg_0304 selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; SPTR: Selenide, water dikinase; TIGRFAM: selenide, water dikinase; manually curated; selenocysteine-containing protein; IMG reference gene:2505284765; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: selenium donor protein YP_004626275.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR000014:IPR003661:IPR003594:IPR001789:IPR 004358:IPR005467; KEGG: dat:HRM2_39140 two domain fusion protein (N:methyl-accepting chemotaxis protein-C:sensory box histidine kinase/response regulator); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; SPTR: Two domain fusion protein (N:Methyl-accepting chemotaxis protein-C:sensory box histidine kinase/response regulator); IMG reference gene:2505284766; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004626276.1 InterPro IPR013429; KEGG: alv:Alvin_0718 regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; SPTR: Regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; IMG reference gene:2505284767; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family YP_004626277.1 InterPro IPR007202; KEGG: dak:DaAHT2_0716 Fe-S cluster domain protein; PFAM: Fe-S cluster domain protein; SPTR: Putative Fe-S cluster; IMG reference gene:2505284768; PFAM: Putative Fe-S cluster YP_004626278.1 COGs: COG1110 Reverse gyrase; InterProIPR005736:IPR014001:IPR006154:IPR003601:IPR 003602:IPR011545:IPR006171:IPR013497:IPR000380:IPR014021; KEGG: aae:aq_1159 reverse gyrase; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DEAD/DEAH box helicase domain protein; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; DEAD-like helicase; SPTR: Reverse gyrase; TIGRFAM: reverse gyrase; IMG reference gene:2505284769; PFAM: Toprim domain; DEAD/DEAH box helicase; DNA topoisomerase; TIGRFAM: reverse gyrase YP_004626279.1 COGs: COG3707 Response regulator with putative antiterminator output domain; InterPro IPR001789:IPR005561:IPR008327; KEGG: rca:Rcas_3118 response regulator receiver/ANTAR domain-containing protein; PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; SPTR: Response regulator receiver and ANTAR domain protein; IMG reference gene:2505284770; PFAM: Response regulator receiver domain; ANTAR domain YP_004626280.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505284771 YP_004626281.1 COGs: COG0752 Glycyl-tRNA synthetase alpha subunit; InterPro IPR002310:IPR006194; KEGG: sat:SYN_01536 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; IMG reference gene:2505284772; PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit YP_004626282.1 COGs: COG0751 Glycyl-tRNA synthetase beta subunit; InterPro IPR015944:IPR002311:IPR008909:IPR006194; KEGG: sat:SYN_01537 glycyl-tRNA synthetase subunit beta; PFAM: glycyl-tRNA synthetase beta subunit; DALR anticodon binding domain protein; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit; IMG reference gene:2505284773; PFAM: Glycyl-tRNA synthetase beta subunit; DALR anticodon binding domain; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit YP_004626283.1 KEGG: tva:TVAG_315830 Adenylate and Guanylate cyclase catalytic domain containing protein; SPTR: Arf guanyl-nucleotide exchange factor; IMG reference gene:2505284774 YP_004626284.1 COGs: COG0048 Ribosomal protein S12; InterPro IPR005679:IPR006032; KEGG: saf:SULAZ_1761 ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; IMG reference gene:2505284776; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle YP_004626285.1 COGs: COG0049 Ribosomal protein S7; InterPro IPR005717:IPR000235:IPR020606; KEGG: dsa:Desal_1182 ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; IMG reference gene:2505284777; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle YP_004626286.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR004540:IPR005225:IPR000795:IPR004161:IPR 005517:IPR000640; KEGG: mta:Moth_2463 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; IMG reference gene:2505284778; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004626287.1 COGs: COG0050 GTPase - translation elongation factors; InterProIPR004541:IPR005225:IPR000795:IPR004161:IPR 004160; KEGG: ddf:DEFDS_1787 translation elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; SPTR: Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; IMG reference gene:2505284779; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_004626288.1 COGs: COG0051 Ribosomal protein S10; InterPro IPR005731:IPR001848:IPR018268; KEGG: bba:Bd2978 30S ribosomal protein S10; PFAM: ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; IMG reference gene:2505284780; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_004626289.1 COGs: COG0087 Ribosomal protein L3; InterPro IPR019927:IPR000597; KEGG: dps:DP1124 50S ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; IMG reference gene:2505284781; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial YP_004626290.1 COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: tmt:Tmath_1932 ribosomal protein L4/L1e; PFAM: ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; IMG reference gene:2505284782; PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle YP_004626291.1 COGs: COG0089 Ribosomal protein L23; InterPro IPR013025:IPR001014; KEGG: hor:Hore_01190 ribosomal protein L25/L23; PFAM: Ribosomal protein L25/L23; SPTR: Ribosomal protein L25/L23; IMG reference gene:2505284783; PFAM: Ribosomal protein L23 YP_004626292.1 COGs: COG0090 Ribosomal protein L2; InterPro IPR005880:IPR002171; KEGG: hor:Hore_01200 50S ribosomal protein L2; PFAM: ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; IMG reference gene:2505284784; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar YP_004626293.1 COGs: COG0185 Ribosomal protein S19; InterPro IPR005732:IPR002222:IPR020934; KEGG: ddf:DEFDS_1768 30S ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; IMG reference gene:2505284785; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle YP_004626294.1 COGs: COG0091 Ribosomal protein L22; InterPro IPR005727:IPR001063:IPR018260; KEGG: adg:Adeg_1519 ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; IMG reference gene:2505284786; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type YP_004626295.1 COGs: COG0092 Ribosomal protein S3; InterProIPR005704:IPR004087:IPR008282:IPR004044:IPR 001351:IPR018280; KEGG: gsu:GSU2851 30S ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; SMART: KH domain protein; SPTR: SSU ribosomal protein S3p (S3e); TIGRFAM: ribosomal protein S3; IMG reference gene:2505284787; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type YP_004626296.1 COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR000114:IPR016180:IPR020798; KEGG: csc:Csac_2280 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; IMG reference gene:2505284788; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle YP_004626297.1 InterPro IPR001854:IPR018254; KEGG: bts:Btus_0161 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: Ribosomal protein L29; TIGRFAM: ribosomal protein L29; IMG reference gene:2505284789; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29 YP_004626298.1 COGs: COG0186 Ribosomal protein S17; InterPro IPR019984:IPR000266:IPR019979; KEGG: tna:CTN_1002 30S ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; IMG reference gene:2505284790; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17 YP_004626299.1 COGs: COG0093 Ribosomal protein L14; InterPro IPR005745:IPR000218:IPR019972; KEGG: pca:Pcar_0711 50S ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; IMG reference gene:2505284791; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle YP_004626300.1 COGs: COG0198 Ribosomal protein L24; InterPro IPR003256:IPR005824:IPR005825; KEGG: pth:PTH_0331 50S ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; SPTR: 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; IMG reference gene:2505284792; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle YP_004626301.1 COGs: COG0094 Ribosomal protein L5; InterPro IPR002132; KEGG: dol:Dole_0720 50S ribosomal protein L5; SPTR: 50S ribosomal protein L5; IMG reference gene:2505284793; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5 YP_004626302.1 COGs: COG0199 Ribosomal protein S14; InterPro IPR001209:IPR018271; KEGG: chy:CHY_2296 30S ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: 30S ribosomal protein S14 type Z; IMG reference gene:2505284794; PFAM: Ribosomal protein S14p/S29e YP_004626303.1 COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: aac:Aaci_2697 ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: Ribosomal protein S8; IMG reference gene:2505284795; PFAM: Ribosomal protein S8 YP_004626304.1 COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR019906:IPR020040:IPR002358:IPR000702; KEGG: ddf:DEFDS_1757 50S ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; IMG reference gene:2505284796; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type YP_004626305.1 COGs: COG0256 Ribosomal protein L18; InterPro IPR004389:IPR005484; KEGG: tnp:Tnap_1325 ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; SPTR: 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; IMG reference gene:2505284797; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type YP_004626306.1 COGs: COG0098 Ribosomal protein S5; InterPro IPR005712:IPR013810:IPR005324:IPR018192; KEGG: pth:PTH_0336 30S ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein; SPTR: 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; IMG reference gene:2505284798; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type YP_004626307.1 COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR005996:IPR000517:IPR018038; KEGG: mcu:HMPREF0573_10320 50S ribosomal protein L30; PFAM: ribosomal protein L30; SPTR: 50S ribosomal protein l30; TIGRFAM: ribosomal protein L30; IMG reference gene:2505284799; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle YP_004626308.1 COGs: COG0200 Ribosomal protein L15; InterPro IPR005749:IPR001196; KEGG: sth:STH3056 50S ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15; IMG reference gene:2505284800; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle YP_004626309.1 COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: dma:DMR_12400 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase subunit secY; TIGRFAM: preprotein translocase, SecY subunit; IMG reference gene:2505284801; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit YP_004626310.1 COGs: COG0563 Adenylate kinase and related kinase; InterPro IPR006259:IPR000850:IPR007862; KEGG: apo:Arcpr_1334 adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain-containing protein; SPTR: Adenylate kinase; TIGRFAM: adenylate kinase; IMG reference gene:2505284802; PFAM: Adenylate kinase, active site lid; Adenylate kinase; TIGRFAM: adenylate kinases YP_004626311.1 COGs: COG0024 Methionine aminopeptidase; InterPro IPR002467:IPR000994:IPR001714; KEGG: sfu:Sfum_1577 methionine aminopeptidase, type I; PFAM: peptidase M24; SPTR: Methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; manually curated; IMG reference gene:2505284803; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_004626312.1 COGs: COG0361 Translation initiation factor 1 (IF-1); InterPro IPR004368:IPR006196; KEGG: dps:DP1147 translation initiation factor IF-1; PFAM: S1 IF1 family protein; SPTR: Translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; IMG reference gene:2505284804; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: eukaryotic/archaeal initiation factor 1A; translation initiation factor IF-1 YP_004626313.1 COGs: COG0099 Ribosomal protein S13; InterPro IPR019980:IPR001892:IPR018269; KEGG: sfu:Sfum_1579 30S ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; IMG reference gene:2505284805; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13 YP_004626314.1 COGs: COG0100 Ribosomal protein S11; InterPro IPR019981:IPR001971:IPR018102; KEGG: tte:TTE2265 30S ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; IMG reference gene:2505284806; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11 YP_004626315.1 COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR005709:IPR002942:IPR001912:IPR018079; KEGG: gem:GM21_3302 30S ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; IMG reference gene:2505284807; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type YP_004626316.1 COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; InterProIPR011773:IPR011263:IPR011261:IPR011262:IPR 011260; KEGG: sfu:Sfum_1582 DNA-directed RNA polymerase subunit alpha; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; SMART: RNA polymerase RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; IMG reference gene:2505284808; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type YP_004626317.1 COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: dol:Dole_0734 50S ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; IMG reference gene:2505284809; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17 YP_004626318.1 COGs: COG1409 phosphohydrolase; InterPro IPR004843; KEGG: mar:MAE_46320 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Metallophosphoesterase; IMG reference gene:2505284810; PFAM: Calcineurin-like phosphoesterase YP_004626319.1 COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593:IPR003959; KEGG: tte:TTE1784 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase; IMG reference gene:2505284811; PFAM: MgsA AAA+ ATPase C terminal; Holliday junction DNA helicase ruvB N-terminus YP_004626320.1 COGs: COG0854 Pyridoxal phosphate biosynthesis protein; InterPro IPR002036:IPR004569:IPR020549; KEGG: dak:DaAHT2_0453 pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; protein of unknown function UPF0054; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Putative uncharacterized protein; TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; IMG reference gene:2505284812; PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family; pyridoxine 5'-phosphate synthase YP_004626321.1 KEGG: drt:Dret_2466 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284813 YP_004626322.1 COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047; KEGG: drt:Dret_2267 ammonium transporter; PFAM: ammonium transporter; SPTR: Ammonium transporter; TIGRFAM: ammonium transporter; IMG reference gene:2505284814; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter YP_004626323.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: dma:DMR_34440 site-specific recombinase; PFAM: integrase family protein; SPTR: Integrase family protein; IMG reference gene:2505284815; PFAM: Phage integrase family YP_004626324.1 KEGG: cyn:Cyan7425_5352 protein of unknown function UPF0175; SPTR: Putative uncharacterized protein; IMG reference gene:2505284816; PFAM: Uncharacterised protein family (UPF0175) YP_004626325.1 COGs: COG2405 nucleic acid-binding protein contains PIN domain; KEGG: ter:Tery_4273 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284817; PFAM: Domain of unknown function (DUF3368) YP_004626326.1 KEGG: mja:MJ0650 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284819 YP_004626327.1 KEGG: cak:Caul_3843 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284820 YP_004626328.1 InterPro IPR015330; KEGG: drt:Dret_2544 hypothetical protein; PFAM: Bifunctional DNA primase/polymerase; SPTR: Putative uncharacterized protein; IMG reference gene:2505284821; PFAM: Bifunctional DNA primase/polymerase, N-terminal YP_004626329.1 KEGG: uma:UM02574.1 hypothetical protein; IMG reference gene:2505284822 YP_004626330.1 COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014001:IPR001650:IPR006935:IPR014021; KEGG: wch:wcw_p0014 putative helicase; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: Putative helicase; IMG reference gene:2505284823; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit YP_004626331.1 KEGG: nde:NIDE3988 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284824 YP_004626332.1 KEGG: afn:Acfer_1949 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284825 YP_004626333.1 KEGG: vsp:VS_1096 cell division protein MukB; SPTR: Possible exodeoxyribonuclease V gamma chain; IMG reference gene:2505284826 YP_004626334.1 KEGG: cbf:CLI_3874 putative R-2-hydroxyglutaryl-CoA dehydratase subunit; SPTR: 2-hydroxyglutaryl-CoA dehydratase, D-component; IMG reference gene:2505284827 YP_004626335.1 KEGG: dae:Dtox_3705 phage protein; SPTR: Phage replication protein; IMG reference gene:2505284828 YP_004626336.1 KEGG: ckr:CKR_0097 hypothetical protein; SPTR: Altronate dehydratase; IMG reference gene:2505284829 YP_004626337.1 KEGG: dak:DaAHT2_2064 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284831 YP_004626338.1 KEGG: dba:Dbac_1389 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; selenocysteine-containing protein; IMG reference gene:2505284832 YP_004626339.1 COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR005986:IPR000534:IPR012280:IPR012080; KEGG: aae:aq_1866 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; IMG reference gene:2505284833; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) YP_004626340.1 COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604:IPR003593:IPR003395:IPR002078; KEGG: sub:SUB1271 DNA repair protein; PFAM: SMC domain protein; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; TIGRFAM: DNA repair protein RecN; IMG reference gene:2505284834; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN YP_004626341.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; KEGG: dtu:Dtur_1496 protein of unknown function DUF814; SPTR: Putative uncharacterized protein; IMG reference gene:2505284835; PFAM: Domain of unknown function (DUF814); Thiamine biosynthesis protein (ThiI) YP_004626342.1 COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR007691:IPR020573:IPR001451; KEGG: dsa:Desal_2522 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; IMG reference gene:2505284836; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_004626343.1 COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR013114; KEGG: cak:Caul_2794 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; SPTR: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; IMG reference gene:2505284837; PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ YP_004626344.1 COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR010137:IPR001451; KEGG: llo:LLO_2684 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR: UDP-N-acetylglucosamine acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; IMG reference gene:2505284838; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YP_004626345.1 COGs: COG3494 conserved hypothetical protein; InterPro IPR010415; KEGG: dps:DP2942 hypothetical protein; PFAM: protein of unknown function DUF1009; SPTR: Putative uncharacterized protein; IMG reference gene:2505284839; PFAM: Protein of unknown function (DUF1009) YP_004626346.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: gme:Gmet_2352 oxidoreductase-like; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Oxidoreductase-like; IMG reference gene:2505284840; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_004626347.1 COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: glo:Glov_0767 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; SPTR: Lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; IMG reference gene:2505284841; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase YP_004626348.1 COGs: COG3408 Glycogen debranching protein; InterPro IPR010401; KEGG: geo:Geob_1924 amylo-alpha-16-glucosidase; PFAM: Amylo-alpha-16-glucosidase; SPTR: Amylo-alpha-16-glucosidase; IMG reference gene:2505284842; PFAM: Amylo-alpha-1,6-glucosidase YP_004626349.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: nwa:Nwat_1578 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; IMG reference gene:2505284843; PFAM: Glycosyl transferases group 1 YP_004626350.1 COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: rce:RC1_2898 NAD-dependent deacetylase; PFAM: Silent information regulator protein Sir2; SPTR: NAD-dependent deacetylase; IMG reference gene:2505284844; PFAM: Sir2 family YP_004626351.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR005225:IPR000795:IPR004161:IPR005517:IPR 000640; KEGG: sat:SYN_02930 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Protein translation elongation factor G; TIGRFAM: small GTP-binding protein; IMG reference gene:2505284845; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G YP_004626352.1 COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR020817:IPR008284:IPR001453; KEGG: pca:Pcar_1966 molybdenum cofactor biosynthesis protein; PFAM: molybdopterin binding domain; SPTR: Molybdenum cofactor biosynthesis protein; TIGRFAM: molybdenum cofactor synthesis domain protein; IMG reference gene:2505284846; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain YP_004626353.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015:IPR006016; KEGG: mif:Metin_0312 UspA domain protein; PFAM: UspA domain-containing protein; SPTR: UspA domain protein; IMG reference gene:2505284847; PFAM: Universal stress protein family YP_004626354.1 InterPro IPR014995; KEGG: sfu:Sfum_3650 hypothetical protein; PFAM: Domain of unknown function DUF1844; SPTR: Conserved hypothetical cytosolic protein; IMG reference gene:2505284848; PFAM: Domain of unknown function (DUF1844) YP_004626355.1 COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; InterPro IPR004424:IPR006204:IPR013750; KEGG: pca:Pcar_2005 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; IMG reference gene:2505284849; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_004626356.1 COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR005946:IPR000842:IPR000836; KEGG: dps:DP2734 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; IMG reference gene:2505284850; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_004626357.1 COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc); InterPro IPR001021:IPR020055; KEGG: hor:Hore_21220 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like; SPTR: 50S ribosomal protein L25; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; IMG reference gene:2505284851; PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form YP_004626358.1 COGs: COG0193 Peptidyl-tRNA hydrolase; InterPro IPR001328:IPR018171; KEGG: tle:Tlet_0454 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; IMG reference gene:2505284852; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase YP_004626359.1 COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: sat:SYN_01003 appr-1-p histone processing protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; SPTR: Appr-1-p histone processing protein; IMG reference gene:2505284853; PFAM: Macro domain YP_004626360.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR003095:IPR012724:IPR001623:IPR001305:IPR 018253:IPR002939; KEGG: tte:TTE0956 molecular chaperone; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Chaperone protein dnaJ; TIGRFAM: chaperone protein DnaJ; IMG reference gene:2505284854; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ YP_004626361.1 COGs: COG1570 Exonuclease VII large subunit; InterPro IPR003753:IPR004365:IPR020579; KEGG: sth:STH1846 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Exodeoxyribonuclease 7 large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; IMG reference gene:2505284855; PFAM: Exonuclease VII, large subunit; OB-fold nucleic acid binding domain; TIGRFAM: exodeoxyribonuclease VII, large subunit YP_004626362.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: hha:Hhal_1684 peptidase M23B; PFAM: Peptidase M23; SPTR: Peptidase M23; IMG reference gene:2505284856; PFAM: Peptidase family M23 YP_004626363.1 InterPro IPR003761; KEGG: gur:Gura_2177 exodeoxyribonuclease VII small subunit; PFAM: Exonuclease VII small subunit; SPTR: Exodeoxyribonuclease 7 small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; IMG reference gene:2505284857; PFAM: Exonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit YP_004626364.1 COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: pth:PTH_1194 geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; SPTR: Geranylgeranyl pyrophosphate synthase; IMG reference gene:2505284858; PFAM: Polyprenyl synthetase YP_004626365.1 COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153; KEGG: dal:Dalk_1995 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; SPTR: Sodium/hydrogen exchanger; IMG reference gene:2505284859; PFAM: Sodium/hydrogen exchanger family YP_004626366.1 COGs: COG1154 Deoxyxylulose-5-phosphate synthase; InterProIPR005477:IPR005474:IPR020826:IPR005475:IPR 005476; KEGG: dak:DaAHT2_1033 deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain-containing protein; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; IMG reference gene:2505284860; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase YP_004626367.1 COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: dba:Dbac_2229 patched family protein; SPTR: Patched; IMG reference gene:2505284861; PFAM: MMPL family YP_004626368.1 KEGG: dba:Dbac_2226 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284862 YP_004626369.1 KEGG: dba:Dbac_2225 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284863; PFAM: Protein of unknown function (DUF1329) YP_004626370.1 KEGG: sfu:Sfum_0603 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284864 YP_004626371.1 COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR014732:IPR018089:IPR001754; KEGG: dat:HRM2_35880 PyrF; PFAM: Orotidine 5'-phosphate decarboxylase; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: PyrF; TIGRFAM: orotidine 5'-phosphate decarboxylase; IMG reference gene:2505284865; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 1 YP_004626372.1 COGs: COG1415 conserved hypothetical protein; InterPro IPR008482; KEGG: mta:Moth_0136 hypothetical protein; PFAM: protein of unknown function DUF763; SPTR: Putative uncharacterized protein; IMG reference gene:2505284866; PFAM: Protein of unknown function (DUF763) YP_004626373.1 KEGG: dde:Dde_2270 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284867 YP_004626374.1 COGs: COG2181 Nitrate reductase gamma subunit; InterPro IPR003816; KEGG: sfu:Sfum_1146 nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; SPTR: Nitrate reductase, gamma subunit; IMG reference gene:2505284868; PFAM: Nitrate reductase gamma subunit YP_004626375.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR017900:IPR006655; KEGG: drt:Dret_0236 4Fe-4S ferredoxin, iron-sulfur binding; SPTR: Membrane-bound menaquinol oxidoreductase, cytoplasmic ferredoxin subunit; IMG reference gene:2505284869 YP_004626376.1 InterPro IPR011031; KEGG: drt:Dret_0237 cytochrome c family protein; SPTR: Membrane-bound menaquinol oxidoreductase, cytochrome c subunit; IMG reference gene:2505284870 YP_004626377.1 COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR006311:IPR017909:IPR017896:IPR017900; KEGG: drt:Dret_0238 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Membrane-bound menaquinol oxidoreductase, periplasmic ferredoxin subunit; manually curated; IMG reference gene:2505284871 YP_004626378.1 COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: dhd:Dhaf_0260 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: Polysulphide reductase NrfD; IMG reference gene:2505284872; PFAM: Polysulphide reductase, NrfD YP_004626379.1 COGs: COG1797 Cobyrinic acid a c-diamide synthase; InterPro IPR004484:IPR017929:IPR011698; KEGG: sfu:Sfum_4044 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; SPTR: Cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (Glutamine-hydrolysing); TIGRFAM: cobyrinic acid a,c-diamide synthase; IMG reference gene:2505284873; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase YP_004626380.1 InterPro IPR017896:IPR017900; KEGG: dps:DP2755 ferredoxin III; SPTR: Probable ferredoxin III; IMG reference gene:2505284874; PFAM: 4Fe-4S binding domain YP_004626381.1 KEGG: fpl:Ferp_1592 SMC domain protein; SPTR: ErpL protein; IMG reference gene:2505284875 YP_004626382.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: dat:HRM2_27810 peptidase M23/M37 family protein; PFAM: Peptidase M23; SPTR: Peptidase M23/M37 family protein; IMG reference gene:2505284876; PFAM: Peptidase family M23 YP_004626383.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269; KEGG: ckr:CKR_0144 hypothetical protein; PFAM: dihydrouridine synthase DuS; SPTR: TIM-barrel protein, nifR3 family; IMG reference gene:2505284877; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: putative TIM-barrel protein, nifR3 family YP_004626384.1 InterPro IPR019825:IPR000771; KEGG: tye:THEYE_A1945 hypothetical protein; PFAM: ketose-bisphosphate aldolase class-II; SPTR: Putative uncharacterized protein; IMG reference gene:2505284878; PFAM: Fructose-bisphosphate aldolase class-II YP_004626385.1 COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase; InterPro IPR014816; KEGG: tai:Taci_1129 tRNA (adenine-N(1)-)-methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit; SPTR: tRNA (Adenine-N(1)-)-methyltransferase; IMG reference gene:2505284879; PFAM: tRNA methyltransferase complex GCD14 subunit YP_004626386.1 COGs: COG1362 Aspartyl aminopeptidase; InterPro IPR001948; KEGG: dal:Dalk_0808 putative aminopeptidase 1; PFAM: peptidase M18 aminopeptidase I; SPTR: M18 family aminopeptidase; IMG reference gene:2505284880; PFAM: Aminopeptidase I zinc metalloprotease (M18) YP_004626387.1 COGs: COG0616 Periplasmic serine protease (ClpP class); KEGG: ddf:DEFDS_0218 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284881; PFAM: Serine dehydrogenase proteinase YP_004626388.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: ddf:DEFDS_0217 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; IMG reference gene:2505284882; PFAM: Rhomboid family YP_004626389.1 COGs: COG4030 conserved hypothetical protein; KEGG: mth:MTH402 hypothetical protein; SPTR: Putative uncharacterized protein ehaR; IMG reference gene:2505284883 YP_004626390.1 KEGG: afw:Anae109_2844 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284884 YP_004626391.1 COGs: COG0519 GMP synthase PP-ATPase domain/subunit; InterProIPR011702:IPR006220:IPR001317:IPR004739:IPR 001674:IPR017926:IPR000991; KEGG: tye:THEYE_A0205 GMP synthase; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; SPTR: GMP synthase (Glutamine-hydrolyzing); TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; IMG reference gene:2505284885; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit YP_004626392.1 COGs: COG1592 Rubrerythrin; InterPro IPR004039:IPR009040:IPR003251; KEGG: dak:DaAHT2_2069 rubrerythrin; PFAM: Rubrerythrin; SPTR: Rubrerythrin; IMG reference gene:2505284886; PFAM: Rubrerythrin YP_004626393.1 COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR006168:IPR011128:IPR006109; KEGG: lbf:LBF_0334 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; IMG reference gene:2505284887; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YP_004626394.1 KEGG: slp:Slip_1886 PilT protein domain protein; SPTR: PilT protein domain protein; IMG reference gene:2505284888 YP_004626395.1 COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterProIPR004473:IPR014001:IPR014021:IPR007409:IPR 006935; KEGG: chl:Chy400_1964 type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; IMG reference gene:2505284890; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Domain of unknown function (DUF3387); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family YP_004626396.1 KEGG: lch:Lcho_1314 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284891 YP_004626397.1 KEGG: kol:Kole_1274 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284892 YP_004626398.1 COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: hin:HI1286 type I restriction/modification specificity protein; PFAM: restriction modification system DNA specificity domain; SPTR: Restriction modification system DNA specificity domain protein; IMG reference gene:2505284893; PFAM: Type I restriction modification DNA specificity domain YP_004626399.1 InterPro IPR000209; KEGG: bbr:BB0911 putative serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Subtilisin-like serine protease P4; IMG reference gene:2505284894; PFAM: Subtilase family YP_004626400.1 COGs: COG1223 ATPase (AAA+ superfamily); InterPro IPR003593:IPR003959; KEGG: bbr:BB0910 putative ATPase; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: Putative ATPase; IMG reference gene:2505284895; PFAM: ATPase family associated with various cellular activities (AAA) YP_004626401.1 COGs: COG4804 conserved hypothetical protein; InterPro IPR009362; KEGG: rrs:RoseRS_0273 hypothetical protein; PFAM: protein of unknown function DUF1016; SPTR: Putative uncharacterized protein; IMG reference gene:2505284896; PFAM: Protein of unknown function (DUF1016) YP_004626402.1 COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002296:IPR002052:IPR003356; KEGG: chl:Chy400_1958 N-6 DNA methylase; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: N-6 DNA methylase; IMG reference gene:2505284897; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM) YP_004626403.1 IMG reference gene:2505284898 YP_004626404.1 KEGG: nmr:Nmar_1213 SMC domain-containing protein; SPTR: Phage major capsid protein, HK97 family; IMG reference gene:2505284901 YP_004626405.1 COGs: COG1334 Uncharacterized flagellar protein FlaG; InterPro IPR005186; KEGG: pmx:PERMA_1619 flagellar protein FlaG; PFAM: flagellar protein FlaG protein; SPTR: Flagellar protein FlaG; IMG reference gene:2505284902; PFAM: FlaG protein YP_004626406.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dal:Dalk_0648 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; IMG reference gene:2505284903; PFAM: Response regulator receiver domain YP_004626407.1 COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR006675:IPR001789:IPR003607:IPR006674; KEGG: dat:HRM2_37390 predicted two-component system transcriptional regulator; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; SPTR: Predicted two-component system transcriptional regulator; TIGRFAM: metal dependent phophohydrolase; IMG reference gene:2505284904; PFAM: HD domain; Response regulator receiver domain; TIGRFAM: uncharacterized domain HDIG YP_004626408.1 KEGG: sfu:Sfum_3293 ATPase domain-containing protein; SPTR: ATP-binding region, ATPase domain protein domain protein; IMG reference gene:2505284905 YP_004626409.1 COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: gme:Gmet_0890 smf protein; PFAM: SMF family protein; SPTR: SMF protein; TIGRFAM: DNA protecting protein DprA; IMG reference gene:2505284906; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA YP_004626410.1 COGs: COG0550 Topoisomerase IA; InterProIPR000380:IPR005733:IPR006154:IPR003601:IPR 003602:IPR006171:IPR013497:IPR013498; KEGG: dak:DaAHT2_2318 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; SPTR: DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; IMG reference gene:2505284907; PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial; DNA topoisomerase I, archaeal YP_004626411.1 COGs: COG2820 Uridine phosphorylase; InterPro IPR000845; KEGG: dat:HRM2_28110 putative purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; SPTR: Putative purine nucleoside phosphorylase; IMG reference gene:2505284908; PFAM: Phosphorylase superfamily YP_004626412.1 InterPro IPR003998:IPR006312:IPR003369; KEGG: dps:DP2620 sec-independent protein translocase protein TatE; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Related to Sec-independent protein translocase protein TatE; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; IMG reference gene:2505284909; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_004626413.1 COGs: COG1333 ResB protein required for cytochrome c biosynthesis; KEGG: dps:DP1682 cytochrome c-type forming protein Ccs1; SPTR: Related to cytochrome c-type forming protein Ccs1; IMG reference gene:2505284910; PFAM: ResB-like family YP_004626414.1 InterPro IPR005357; KEGG: swo:Swol_0620 hypothetical protein; PFAM: Uncharacterised protein family UPF0150; SPTR: Putative uncharacterized protein; IMG reference gene:2505284912; PFAM: Uncharacterised protein family (UPF0150) YP_004626415.1 COGs: COG1724 periplasmic or secreted lipoprotein; InterPro IPR012933; KEGG: mba:Mbar_A2121 hypothetical protein; PFAM: YcfA family protein; SPTR: Similar to tr|Q8YVZ2|Q8YVZ2; IMG reference gene:2505284913; PFAM: YcfA-like protein YP_004626416.1 COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR018158:IPR002320:IPR006195:IPR004095:IPR 012947:IPR002314:IPR004154; KEGG: dak:DaAHT2_1245 threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein; SPTR: Threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; IMG reference gene:2505284914; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: threonyl-tRNA synthetase YP_004626417.1 COGs: COG0290 Translation initiation factor 3 (IF-3); InterPro IPR001288:IPR019814:IPR019815; KEGG: sfu:Sfum_0425 translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; SPTR: Translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; IMG reference gene:2505284915; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3 YP_004626418.1 InterPro IPR001706:IPR018265:IPR021137; KEGG: cth:Cthe_1224 50S ribosomal protein L35P; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; IMG reference gene:2505284916; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35 YP_004626419.1 COGs: COG0292 Ribosomal protein L20; InterPro IPR005813; KEGG: ddf:DEFDS_1501 50S ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; IMG reference gene:2505284917; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20 YP_004626420.1 COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; InterPro IPR004529:IPR006195:IPR004188:IPR002319; KEGG: sat:SYN_01721 phenylalanyl-tRNA synthetase alpha chain; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; SPTR: Phenylalanyl-tRNA synthetase alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; IMG reference gene:2505284918; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit YP_004626421.1 COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterProIPR004532:IPR002547:IPR005121:IPR005146:IPR 005147; KEGG: sfu:Sfum_0429 phenylalanyl-tRNA synthetase, beta subunit; PFAM: B3/4 domain protein; t-RNA-binding domain-containing protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; SPTR: Phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; IMG reference gene:2505284919; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial YP_004626422.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: dar:Daro_1327 integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: Integration host factor subunit alpha 1; IMG reference gene:2505284920; PFAM: Bacterial DNA-binding protein YP_004626423.1 InterPro IPR000551; KEGG: wbm:Wbm0660 transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Predicted transcriptional regulator; IMG reference gene:2505284921; PFAM: MerR family regulatory protein YP_004626424.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); KEGG: sli:Slin_3239 alpha/beta hydrolase fold protein; SPTR: Alpha/beta hydrolase fold protein; IMG reference gene:2505284922; PFAM: alpha/beta hydrolase fold YP_004626425.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: tal:Thal_1434 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; manually curated; IMG reference gene:2505284923; PFAM: Glycosyl transferases group 1 YP_004626426.1 COGs: COG0438 Glycosyltransferase; InterPro IPR003141:IPR004013:IPR001296; KEGG: tal:Thal_1435 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: Glycosyl transferase group 1; IMG reference gene:2505284924; PFAM: PHP domain; Glycosyl transferases group 1 YP_004626427.1 COGs: COG3233 deacetylase; KEGG: tal:Thal_1436 deacetylase-like protein; SPTR: Deacetylase-like protein; IMG reference gene:2505284925; PFAM: Uncharacterized protein conserved in bacteria (DUF2334) YP_004626428.1 KEGG: nmu:Nmul_A0032 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284926 YP_004626429.1 KEGG: dat:HRM2_41330 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284927 YP_004626430.1 KEGG: nhl:Nhal_1388 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284928 YP_004626431.1 COGs: COG0474 Cation transport ATPase; InterProIPR001757:IPR000695:IPR018303:IPR004014:IPR 008250:IPR005834:IPR006068; KEGG: cyt:cce_2606 cation-transporting ATPase; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: ATPase, P-type (Transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; IMG reference gene:2505284929; PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; Cation transporter/ATPase, N-terminus; haloacid dehalogenase-like hydrolase; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004626432.1 COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: nmu:Nmul_A0036 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (MAT); TIGRFAM: S-adenosylmethionine synthetase; IMG reference gene:2505284930; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase YP_004626433.1 KEGG: nmu:Nmul_A0035 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284931 YP_004626434.1 InterPro IPR003220; KEGG: sfu:Sfum_2900 hypothetical protein; PFAM: Insertion element protein; SPTR: ISCpe7, transposase; IMG reference gene:2505284932; PFAM: Topoisomerase DNA binding C4 zinc finger; Insertion element protein YP_004626435.1 InterPro IPR013433; KEGG: maq:Maqu_3414 putative polyhydroxyalkanoic acid system protein; SPTR: Putative uncharacterized protein; TIGRFAM: polyhydroxyalkanoic acid system protein; IMG reference gene:2505284933; PFAM: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); TIGRFAM: putative polyhydroxyalkanoic acid system protein YP_004626436.1 COGs: COG1242 Fe-S oxidoreductase; InterPro IPR005911:IPR006638:IPR007197; KEGG: dol:Dole_0964 putative radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical protein; IMG reference gene:2505284934; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family YP_004626437.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505284935; PFAM: Transposase IS200 like YP_004626438.1 KEGG: dak:DaAHT2_0838 thymidylate synthase complementing protein ThyX; SPTR: Thymidylate synthase complementing protein ThyX; IMG reference gene:2505284936 YP_004626439.1 COGs: COG1048 Aconitase A; InterPro IPR001030:IPR006250:IPR020781:IPR000573; KEGG: dak:DaAHT2_1713 aconitate hydratase; PFAM: aconitate hydratase domain-containing protein; SPTR: Putative aconitate hydratase; TIGRFAM: aconitate hydratase; IMG reference gene:2505284937; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, putative, Aquifex type YP_004626440.1 COGs: COG1615 conserved hypothetical protein; InterPro IPR005372; KEGG: gem:GM21_2279 protein of unknown function UPF0182; PFAM: protein of unknown function UPF0182; SPTR: UPF0182 protein DAMO_1249; IMG reference gene:2505284938; PFAM: Uncharacterised protein family (UPF0182) YP_004626441.1 KEGG: sfu:Sfum_2762 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284939 YP_004626442.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358:IPR000014:IPR003661:IPR003594:IPR 005467:IPR000700:IPR013767; KEGG: sfu:Sfum_2763 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; IMG reference gene:2505284940; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004626443.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR020441:IPR001789:IPR003593:IPR002078:IPR 002197; KEGG: dak:DaAHT2_0272 putative two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Helix-turn-helix, Fis-type; IMG reference gene:2505284941; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004626444.1 InterPro IPR002781; KEGG: dal:Dalk_2526 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: Putative uncharacterized protein; IMG reference gene:2505284942; PFAM: Sulfite exporter TauE/SafE YP_004626445.1 KEGG: dde:Dde_0600 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284943 YP_004626446.1 COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006655:IPR006963:IPR006656:IPR006657; KEGG: sfu:Sfum_1318 molybdopterin oxidoreductase; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; SPTR: Molybdopterin oxidoreductase; IMG reference gene:2505284944; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain YP_004626447.1 COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017896:IPR017900; KEGG: tye:THEYE_A1127 anaerobic dimethyl sulfoxide reductase chain B; SPTR: Anaerobic dimethyl sulfoxide reductase chain B; IMG reference gene:2505284945 YP_004626448.1 COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017896:IPR017900; KEGG: sse:Ssed_0517 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; IMG reference gene:2505284946 YP_004626449.1 COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); InterPro IPR000440; KEGG: gem:GM21_4010 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; SPTR: NADH-quinone oxidoreductase subunit; IMG reference gene:2505284947; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_004626450.1 COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; InterPro IPR006138:IPR006137; KEGG: tye:THEYE_A1126 NADH-quinone oxidoreductase chain b 2; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit B 2; TIGRFAM: NADH-quinone oxidoreductase, B subunit; manually curated; selenocysteine-containing protein; IMG reference gene:2505284948; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit YP_004626451.1 COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; InterPro IPR010218:IPR020396:IPR001268; KEGG: tye:THEYE_A0913 NADH-quinone oxidoreductase chain C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: NADH-quinone oxidoreductase; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; IMG reference gene:2505284949; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C YP_004626452.1 COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; InterPro IPR010219:IPR001135; KEGG: dds:Ddes_1662 NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase I, D subunit; TIGRFAM: NADH dehydrogenase I, D subunit; IMG reference gene:2505284950; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; TIGRFAM: NADH dehydrogenase I, D subunit YP_004626453.1 COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); InterPro IPR018086:IPR001694; KEGG: dds:Ddes_1661 NADH dehydrogenase (quinone); PFAM: respiratory-chain NADH dehydrogenase subunit 1; SPTR: NADH dehydrogenase (Quinone); IMG reference gene:2505284951; PFAM: NADH dehydrogenase YP_004626454.1 COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR010226:IPR017896:IPR017900; KEGG: tye:THEYE_A1124 NADH-quinone oxidoreductase, chain I subfamily, putative; SPTR: NADH-quinone oxidoreductase, chain i subfamily, putative; TIGRFAM: NADH-quinone oxidoreductase, chain I; IMG reference gene:2505284952; PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I YP_004626455.1 COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: ddf:DEFDS_1976 NADH-quinone oxidoreductase subunit J; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; SPTR: NADH-quinone oxidoreductase, J subunit; IMG reference gene:2505284953; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004626456.1 COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); InterPro IPR001133; KEGG: chl:Chy400_3144 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: Putative NADH dehydrogenase (Ubiquinone), chain 4L; IMG reference gene:2505284954; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YP_004626457.1 COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterProIPR003916:IPR018393:IPR003945:IPR001516:IPR 001750; KEGG: dds:Ddes_1657 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: Proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; IMG reference gene:2505284955; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 C-terminus; NADH dehydrogenase subunit 5 C-terminus; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L YP_004626458.1 COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR003918:IPR010227:IPR001750; KEGG: tye:THEYE_A0920 NADH-quinone oxidoreductase chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: NADH-quinone oxidoreductase chain m; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; IMG reference gene:2505284956; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-ubiquinone oxidoreductase chain 4, amino terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M YP_004626459.1 COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); InterPro IPR003916:IPR010096:IPR001750; KEGG: ret:RHE_CH03735 NADH-ubiquinone oxidoreductase chain N protein; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: Putative proton-translocating NADH-quinone oxidoreductase, N subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; IMG reference gene:2505284957; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N YP_004626460.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR020845:IPR000873; KEGG: cce:Ccel_2472 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Putative long-chain-fatty-acid CoA ligase; IMG reference gene:2505284958; PFAM: AMP-binding enzyme YP_004626461.1 KEGG: dak:DaAHT2_0705 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284959 YP_004626462.1 COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078:IPR001608; KEGG: pmx:PERMA_0107 pyridoxal phosphate enzyme, YggS family; PFAM: alanine racemase domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284960; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family YP_004626463.1 COGs: COG1801 conserved hypothetical protein; InterPro IPR002763; KEGG: pho:PH0152 hypothetical protein; PFAM: protein of unknown function DUF72; SPTR: Putative uncharacterized protein PH0152; IMG reference gene:2505284961; PFAM: Protein of unknown function DUF72 YP_004626464.1 COGs: COG1490 D-Tyr-tRNAtyr deacylase; InterPro IPR003732; KEGG: taf:THA_1655 dtd D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; IMG reference gene:2505284962; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004626465.1 COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR007848; KEGG: adg:Adeg_0609 ribosomal protein L11 methyltransferase; PFAM: methyltransferase small; SPTR: Ribosomal protein L11 methyltransferase; IMG reference gene:2505284963; PFAM: Ribosomal protein L11 methyltransferase (PrmA) YP_004626466.1 COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR005290:IPR000589; KEGG: ddf:DEFDS_1521 30S ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; IMG reference gene:2505284964; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle YP_004626467.1 COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); InterProIPR012162:IPR004087:IPR004088:IPR003029:IPR 001247:IPR015847:IPR015848:IPR018111; KEGG: sfu:Sfum_1234 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; PRIAM: Polyribonucleotide nucleotidyltransferase; SMART: KH domain protein; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; IMG reference gene:2505284965; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease family, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase YP_004626468.1 COGs: COG1406 inhibitor of MCP methylation homolog of CheC; KEGG: dat:HRM2_37370 CheX2; SPTR: CheX2; IMG reference gene:2505284966 YP_004626469.1 COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: dal:Dalk_3455 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: NADPH-dependent FMN reductase; IMG reference gene:2505284967; PFAM: NADPH-dependent FMN reductase YP_004626470.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593:IPR003439:IPR017871; KEGG: shc:Shell_0533 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; IMG reference gene:2505284968; PFAM: ABC transporter YP_004626471.1 COGs: COG0555 ABC-type sulfate transport system permease component; InterPro IPR000515; KEGG: pmo:Pmob_0378 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; IMG reference gene:2505284969; PFAM: Binding-protein-dependent transport system inner membrane component YP_004626472.1 COGs: COG3039 Transposase and inactivated derivatives IS5 family; InterPro IPR002559; KEGG: cyn:Cyan7425_5319 transposase IS4 family protein; PFAM: transposase IS4 family protein; SPTR: Transposase; IMG reference gene:2505284971; PFAM: Transposase DDE domain; Transposase domain (DUF772) YP_004626473.1 KEGG: mfe:Mefer_0233 molybdate ABC transporter periplasmic substrate-binding protein; SPTR: Extracellular solute-binding protein family 1; IMG reference gene:2505284972 YP_004626474.1 COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: ppd:Ppro_1945 beta-lactamase domain-containing protein; SPTR: Beta-lactamase domain protein; IMG reference gene:2505284973; PFAM: Metallo-beta-lactamase superfamily YP_004626475.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: sfu:Sfum_1827 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; IMG reference gene:2505284974; PFAM: ABC transporter YP_004626476.1 InterPro IPR013526:IPR000412:IPR013525; KEGG: ppd:Ppro_1264 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; IMG reference gene:2505284975; PFAM: ABC-2 type transporter; TIGRFAM: ABC-2 type transporter, NodJ family YP_004626477.1 COGs: COG1318 transcriptional regulator protein; KEGG: abi:Aboo_0950 bacterio-opsin activator HTH domain protein; SPTR: Bacterio-opsin activator HTH domain protein; IMG reference gene:2505284976; TIGRFAM: probable regulatory domain YP_004626478.1 COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: bth:BT_0584 putative outer membrane protein; SPTR: Putative outer membrane protein; IMG reference gene:2505284977; PFAM: Metallo-beta-lactamase superfamily YP_004626479.1 COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterProIPR019999:IPR005802:IPR018300:IPR001202:IPR 015890:IPR001544; KEGG: dak:DaAHT2_0244 para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; aminotransferase class IV; SPTR: Para-aminobenzoate synthase, component I; TIGRFAM: para-aminobenzoate synthase, subunit I; IMG reference gene:2505284978; PFAM: Aminotransferase class IV; chorismate binding enzyme; TIGRFAM: aminodeoxychorismate synthase, component I, bacterial clade YP_004626480.1 COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterProIPR010066:IPR003593:IPR003439:IPR017871:IPR 013563; KEGG: mac:MA3047 oligopeptide ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: Oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; IMG reference gene:2505284979; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region YP_004626481.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR010066:IPR003593:IPR003439:IPR017871:IPR 013563; KEGG: mla:Mlab_0717 hypothetical protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; IMG reference gene:2505284980; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004626482.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: kcr:Kcr_0931 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease protein; IMG reference gene:2505284981; PFAM: Binding-protein-dependent transport system inner membrane component YP_004626483.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dae:Dtox_0449 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease protein; IMG reference gene:2505284982; PFAM: Binding-protein-dependent transport system inner membrane component YP_004626484.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: dae:Dtox_0450 extracellular solute-binding protein family 5; PFAM: extracellular solute-binding protein family 5; SPTR: Extracellular solute-binding protein family 5; IMG reference gene:2505284983; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004626485.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358:IPR003594:IPR001789:IPR005467; KEGG: cau:Caur_1383 PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator receiver; SPTR: PAS sensor protein; IMG reference gene:2505284984; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain YP_004626486.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089:IPR003660; KEGG: dat:HRM2_43840 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis sensory transducer; IMG reference gene:2505284985; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004626487.1 KEGG: pca:Pcar_1778 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284986; PFAM: Ribbon-helix-helix protein, copG family YP_004626488.1 KEGG: pca:Pcar_1777 cytotoxic translational repressor of toxin-antitoxin stability system; SPTR: Putative uncharacterized protein; IMG reference gene:2505284987 YP_004626489.1 COGs: COG1751 conserved hypothetical protein; InterPro IPR015074; KEGG: ctc:CTC01351 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505284988; PFAM: Pyruvate kinase, alpha/beta domain YP_004626490.1 COGs: COG2206 HD-GYP domain; InterPro IPR003607:IPR006674; KEGG: dvm:DvMF_0995 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase; IMG reference gene:2505284989; PFAM: HD domain YP_004626491.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587:IPR000994; KEGG: dol:Dole_2186 peptidase M24; PFAM: peptidase M24; creatinase; SPTR: Peptidase M24; IMG reference gene:2505284990; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_004626492.1 COGs: COG2951 Membrane-bound lytic murein transglycosylase B; KEGG: drt:Dret_1382 MltB; SPTR: MltB; IMG reference gene:2505284991 YP_004626493.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cco:CCC13826_0386 two component transcriptional regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; IMG reference gene:2505284992; PFAM: Response regulator receiver domain YP_004626494.1 COGs: COG0529 Adenylylsulfate kinase and related kinase; InterPro IPR002891; KEGG: ttr:Tter_0038 adenylylsulfate kinase; PFAM: adenylylsulfate kinase; PRIAM: Adenylyl-sulfate kinase; SPTR: Adenylyl-sulfate kinase; TIGRFAM: adenylylsulfate kinase; IMG reference gene:2505284993; PFAM: Adenylylsulphate kinase; TIGRFAM: adenylylsulfate kinase (apsK) YP_004626495.1 KEGG: dba:Dbac_2210 glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; IMG reference gene:2505284994 YP_004626496.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: dps:DP0999 hypothetical protein; PFAM: Peptidase M23; SPTR: Peptidase M23B; IMG reference gene:2505284996; PFAM: Peptidase family M23 YP_004626497.1 COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR004498:IPR010456; KEGG: sat:SYN_02277 ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; IMG reference gene:2505284997; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase YP_004626498.1 COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: cth:Cthe_1319 hypothetical protein; PFAM: protein of unknown function DUF558; SPTR: Putative uncharacterized protein; IMG reference gene:2505284998; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family YP_004626499.1 COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: pmx:PERMA_0749 putative protease HtpX homolog; PFAM: peptidase M48 Ste24p; SPTR: Probable protease htpX homolog; IMG reference gene:2505284999; PFAM: Peptidase family M48 YP_004626500.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505285000; PFAM: Transposase IS200 like YP_004626501.1 COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; InterPro IPR003758; KEGG: gem:GM21_3412 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; IMG reference gene:2505285001; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase YP_004626502.1 COGs: COG1489 DNA-binding protein stimulates sugar fermentation; InterPro IPR005224; KEGG: abi:Aboo_0871 sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; SPTR: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; manually curated; IMG reference gene:2505285002; PFAM: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein YP_004626503.1 InterPro IPR022265:IPR019734:IPR013026; KEGG: sus:Acid_7234 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: hypothetical protein; IMG reference gene:2505285003; TIGRFAM: TIGR03790 family protein YP_004626504.1 COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR005886:IPR001509; KEGG: pmx:PERMA_2007 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; IMG reference gene:2505285004; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase YP_004626505.1 COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: dak:DaAHT2_0346 porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; PRIAM: Porphobilinogen synthase; SPTR: Porphobilinogen synthase; IMG reference gene:2505285005; PFAM: Delta-aminolevulinic acid dehydratase YP_004626506.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: dat:HRM2_06810 putative membrane efflux protein (permease); PFAM: major facilitator superfamily MFS_1; SPTR: Putative membrane efflux protein (Permease); IMG reference gene:2505285006; PFAM: Major Facilitator Superfamily YP_004626507.1 COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: tye:THEYE_A0136 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: Putative uncharacterized protein; IMG reference gene:2505285007; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_004626508.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: pca:Pcar_0643 ssDNA-binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; IMG reference gene:2505285008; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_004626509.1 COGs: COG1196 Chromosome segregation ATPase; InterPro IPR003395; KEGG: csc:Csac_1621 chromosome segregation protein SMC; PFAM: SMC domain protein; SPTR: Condensin subunit Smc; IMG reference gene:2505285009; PFAM: RecF/RecN/SMC N terminal domain YP_004626510.1 COGs: COG0359 Ribosomal protein L9; InterPro IPR020594:IPR020070:IPR020069; KEGG: sfu:Sfum_3185 ribosomal protein L9; PFAM: Ribosomal protein L9-like; SPTR: 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; IMG reference gene:2505285010; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9 YP_004626511.1 COGs: COG0238 Ribosomal protein S18; InterPro IPR001648; KEGG: dal:Dalk_0918 30S ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; IMG reference gene:2505285011; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18 YP_004626512.1 COGs: COG0360 Ribosomal protein S6; InterPro IPR000529:IPR020814; KEGG: sfu:Sfum_3188 ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; IMG reference gene:2505285012; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6 YP_004626513.1 COGs: COG0127 Xanthosine triphosphate pyrophosphatase; InterPro IPR002637:IPR020922; KEGG: slp:Slip_2049 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1 family protein; PRIAM: Nucleoside-triphosphatase; SPTR: Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; IMG reference gene:2505285014; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family YP_004626514.1 COGs: COG0689 RNase PH; InterPro IPR002381:IPR018336:IPR001247:IPR015847; KEGG: gsu:GSU1795 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: Ribonuclease PH; TIGRFAM: ribonuclease PH; IMG reference gene:2505285015; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH YP_004626515.1 COGs: COG0348 Polyferredoxin; InterPro IPR017896:IPR017900; KEGG: drt:Dret_1785 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; IMG reference gene:2505285016 YP_004626516.1 COGs: COG0011 conserved hypothetical protein; InterPro IPR002767; KEGG: adg:Adeg_1578 protein of unknown function DUF77; PFAM: protein of unknown function DUF77; SPTR: Putative uncharacterized protein; IMG reference gene:2505285017; PFAM: Domain of unknown function DUF77; TIGRFAM: uncharacterized protein, MTH1187 family YP_004626517.1 COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; InterPro IPR004821:IPR005248:IPR004820; KEGG: dal:Dalk_4127 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; IMG reference gene:2505285018; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain YP_004626518.1 COGs: COG0014 Gamma-glutamyl phosphate reductase; InterPro IPR000965:IPR012134:IPR020593; KEGG: dak:DaAHT2_1155 gamma-glutamyl phosphate reductase; PRIAM: Glutamate-5-semialdehyde dehydrogenase; SPTR: Gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; IMG reference gene:2505285019; PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase YP_004626519.1 COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: chy:CHY_1812 fumarylacetoacetate hydrolase family protein; PFAM: fumarylacetoacetate (FAA) hydrolase; PRIAM: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; SPTR: Fumarylacetoacetate hydrolase family protein; IMG reference gene:2505285020; PFAM: Fumarylacetoacetate (FAA) hydrolase family YP_004626520.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014001:IPR014021:IPR001650:IPR014014:IPR 011545; KEGG: ppd:Ppro_1374 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; SPTR: DEAD/DEAH box helicase domain protein; IMG reference gene:2505285021; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_004626521.1 COGs: COG1871 Chemotaxis protein; stimulates methylation of MCP protein; KEGG: sat:SYN_00969 chemotaxis protein that stimulates methylation of MCP proteins; SPTR: CheD, stimulates methylation of MCP proteins; IMG reference gene:2505285022; PFAM: CheD YP_004626522.1 COGs: COG1639 signal transduction protein; InterPro IPR006675:IPR003607:IPR013976; KEGG: dal:Dalk_0653 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; IMG reference gene:2505285023; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG YP_004626523.1 COGs: COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB; InterPro IPR006135; KEGG: tye:THEYE_A0020 flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; SPTR: Flagellar biosynthetic protein FlhB; IMG reference gene:2505285024; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flhB C-terminus-related protein YP_004626524.1 COGs: COG1530 Ribonuclease G and E; InterPro IPR004659:IPR003029:IPR019307; KEGG: dak:DaAHT2_2248 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; SPTR: Ribonuclease E and G; TIGRFAM: ribonuclease, Rne/Rng family; IMG reference gene:2505285025; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family YP_004626525.1 InterPro IPR003448; KEGG: tye:THEYE_A0839 molybdopterin converting factor, subunit 2; PFAM: molybdopterin biosynthesis MoaE protein; SPTR: Protein involved in biosynthesis of molybdopterin; IMG reference gene:2505285026; PFAM: MoaE protein YP_004626526.1 KEGG: mxa:MXAN_5073 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285027 YP_004626527.1 InterPro IPR019734:IPR013026:IPR001440; KEGG: mar:MAE_03780 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2505285028; PFAM: Tetratricopeptide repeat YP_004626528.1 IMG reference gene:2505285031 YP_004626529.1 InterPro IPR002322:IPR011031:IPR020942; KEGG: tye:THEYE_A1056 cytochrome c3 chain A; PFAM: Cytochrome c, class III, conserved region; SPTR: Chain A, Cytochrome C3 From Desulfomicrobium Baculatus; IMG reference gene:2505285032; PFAM: Class III cytochrome C family YP_004626530.1 COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: dal:Dalk_1443 RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; IMG reference gene:2505285033; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family YP_004626531.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dal:Dalk_1444 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; IMG reference gene:2505285034; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004626532.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dal:Dalk_1445 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein; IMG reference gene:2505285035; PFAM: AcrB/AcrD/AcrF family YP_004626533.1 KEGG: sfr:Sfri_2603 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285036 YP_004626534.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003593:IPR003439:IPR017871; KEGG: tye:THEYE_A1038 excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Excinuclease ABC, A subunit; IMG reference gene:2505285037; PFAM: ABC transporter YP_004626535.1 KEGG: fpl:Ferp_1555 paREP15, putative coiled-coil protein; SPTR: Putative coiled-coil protein; IMG reference gene:2505285038 YP_004626536.1 COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR004559:IPR006638:IPR007197:IPR010723; KEGG: slp:Slip_1654 oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; IMG reference gene:2505285039; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase YP_004626537.1 COGs: COG0146 N-methylhydantoinase B/acetone carboxylase alpha subunit; InterPro IPR003692; KEGG: rca:Rcas_1968 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; PRIAM: 5-oxoprolinase (ATP-hydrolyzing); SPTR: 5-oxoprolinase (ATP-hydrolyzing); IMG reference gene:2505285040; PFAM: Hydantoinase B/oxoprolinase YP_004626538.1 COGs: COG1418 HD superfamily hydrolase; InterPro IPR006675:IPR003607:IPR006674; KEGG: dol:Dole_1644 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; IMG reference gene:2505285041; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_004626539.1 COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR002298:IPR018320:IPR002421:IPR008918:IPR 002562:IPR001098:IPR019760:IPR020046:IPR020047; KEGG: dal:Dalk_2747 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: DNA-directed DNA polymerase; 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase I; IMG reference gene:2505285042; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I YP_004626540.1 InterPro IPR009875; KEGG: dak:DaAHT2_2549 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: Type IV pilus assembly PilZ; IMG reference gene:2505285043; PFAM: PilZ domain YP_004626541.1 COGs: COG0565 rRNA methylase; InterPro IPR004384:IPR001537; KEGG: sfu:Sfum_1297 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: RNA methyltransferase, TrmH family, group 1; TIGRFAM: RNA methyltransferase, TrmH family, group 1; IMG reference gene:2505285044; PFAM: SpoU rRNA Methylase family; TIGRFAM: RNA methyltransferase, TrmH family, group 1 YP_004626542.1 COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR004655:IPR013751:IPR013747; KEGG: geo:Geob_2612 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; IMG reference gene:2505285045; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_004626543.1 COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; InterPro IPR012281:IPR003664; KEGG: dae:Dtox_1176 putative glycerol-3-phosphate acyltransferase PlsX; PFAM: fatty acid synthesis plsX protein; SPTR: Fatty acid synthesis plsX protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; IMG reference gene:2505285046; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX YP_004626544.1 COGs: COG0333 Ribosomal protein L32; InterPro IPR002677; KEGG: gur:Gura_1873 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: LSU ribosomal protein L32P; TIGRFAM: ribosomal protein L32; IMG reference gene:2505285047; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32 YP_004626545.1 COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: tye:THEYE_A1480 hypothetical protein; PFAM: protein of unknown function DUF177; SPTR: Putative uncharacterized protein; IMG reference gene:2505285048; PFAM: Uncharacterized ACR, COG1399 YP_004626546.1 COGs: COG2067 Long-chain fatty acid transport protein; InterPro IPR005017; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation; PFAM: membrane protein involved in aromatic hydrocarbon degradation; SPTR: Membrane protein involved in aromatic hydrocarbon degradation; IMG reference gene:2505285049; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX) YP_004626547.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119:IPR020816; KEGG: plt:Plut_1957 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: Histone-like bacterial DNA-binding protein; IMG reference gene:2505285050; PFAM: Bacterial DNA-binding protein YP_004626548.1 KEGG: dps:DP0127 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285051 YP_004626549.1 IMG reference gene:2505285052 YP_004626550.1 COGs: COG3016 Uncharacterized iron-regulated protein; InterPro IPR001478:IPR014782:IPR007314; KEGG: pmx:PERMA_0605 putative peptidase M1, membrane alanine aminopeptidase; PFAM: protein of unknown function DUF399; Peptidase M1 membrane alanine aminopeptidase ; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: Putative peptidase M1, membrane alanine aminopeptidase; IMG reference gene:2505285053; PFAM: Protein of unknown function, DUF399; PDZ domain (Also known as DHR or GLGF) YP_004626551.1 KEGG: mcc:721668 MAM domain containing 4; SPTR: Apical endosomal glycoprotein; IMG reference gene:2505285054 YP_004626552.1 COGs: COG1832 CoA-binding protein; InterPro IPR003781; KEGG: mta:Moth_2421 CoA-binding; PFAM: CoA-binding domain protein; SPTR: CoA-binding; IMG reference gene:2505285055; PFAM: CoA binding domain YP_004626553.1 KEGG: sfu:Sfum_0329 fibronectin, type III; SPTR: Putative uncharacterized protein; IMG reference gene:2505285056 YP_004626554.1 InterPro IPR012902:IPR001120; KEGG: mpt:Mpe_A2942 fimbrial biogenesis protein; SPTR: Fimbrial biogenesis protein; IMG reference gene:2505285057; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004626555.1 InterPro IPR012902; KEGG: emi:Emin_0584 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285058; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004626556.1 COGs: COG4970 Tfp pilus assembly protein FimT; InterPro IPR012902; KEGG: mta:Moth_1549 N-terminal methylation; SPTR: N-terminal methylation; IMG reference gene:2505285059; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004626557.1 KEGG: ppd:Ppro_2465 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285060 YP_004626558.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR001962; KEGG: mbu:Mbur_1580 asparagine synthase, glutamine-hydrolyzing; PFAM: asparagine synthase; SPTR: Glutamine amidotransferase class-II:Asparagine synthase; IMG reference gene:2505285061; PFAM: Asparagine synthase YP_004626559.1 COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: phe:Phep_1976 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase; IMG reference gene:2505285062; PFAM: UbiA prenyltransferase family YP_004626560.1 KEGG: xla:378615 histone deacetylase 9; SPTR: Histone deacetylase 9, MITR protein; IMG reference gene:2505285063 YP_004626561.1 InterPro IPR014942; KEGG: aae:aq_aa25 hypothetical protein; PFAM: Domain of unknown function DUF1814; SPTR: Uncharacterized protein aq_aa25; IMG reference gene:2505285064; PFAM: Domain of unknown function (DUF1814) YP_004626562.1 KEGG: taf:THA_599 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2505285065 YP_004626563.1 KEGG: rca:Rcas_3087 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285066 YP_004626564.1 InterPro IPR018631:IPR012547; KEGG: saf:SULAZ_0155 conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: AAA-ATPase-like; protein of unknown function DUF1703; SPTR: Conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; IMG reference gene:2505285067; PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_004626565.1 InterPro IPR003342; KEGG: cth:Cthe_2397 hypothetical protein; PFAM: glycosyl transferase family 39; SPTR: Putative uncharacterized protein; IMG reference gene:2505285068; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004626566.1 InterPro IPR000863; KEGG: rxy:Rxyl_3105 sulfotransferase; PFAM: sulfotransferase; SPTR: Sulfotransferase; IMG reference gene:2505285069; PFAM: Sulfotransferase domain YP_004626567.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pat:Patl_1191 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; IMG reference gene:2505285070; PFAM: Glycosyl transferases group 1 YP_004626568.1 InterPro IPR007016; KEGG: ppd:Ppro_2455 O-antigen polymerase; PFAM: O-antigen polymerase; SPTR: O-antigen polymerase; IMG reference gene:2505285071; PFAM: O-Antigen ligase; TIGRFAM: probable O-glycosylation ligase, exosortase system type 1-associated YP_004626569.1 COGs: COG2827 endonuclease containing a URI domain; InterPro IPR000305; KEGG: dol:Dole_2997 excinuclease ABC subunit C; PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285072; PFAM: GIY-YIG catalytic domain YP_004626570.1 IMG reference gene:2505285073 YP_004626571.1 COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase and inactivated derivative; IMG reference gene:2505285074; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004626572.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: tjr:TherJR_2108 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; IMG reference gene:2505285075; PFAM: Glycosyl transferases group 1 YP_004626573.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dth:DICTH_0207 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase; IMG reference gene:2505285076; PFAM: Glycosyl transferase family 2 YP_004626574.1 InterPro IPR000863; KEGG: ter:Tery_4121 sulfotransferase; PFAM: sulfotransferase; SPTR: Putative uncharacterized protein; IMG reference gene:2505285077; PFAM: Sulfotransferase domain YP_004626575.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR001509; KEGG: mno:Mnod_5601 oxidoreductase domain protein; PFAM: NAD-dependent epimerase/dehydratase; oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; IMG reference gene:2505285078; PFAM: NAD dependent epimerase/dehydratase family; Oxidoreductase family, NAD-binding Rossmann fold YP_004626576.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: ter:Tery_4771 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, family 2; IMG reference gene:2505285079; PFAM: Glycosyl transferase family 2 YP_004626577.1 InterPro IPR000169; KEGG: rxy:Rxyl_2693 hypothetical protein; SPTR: Sulfotransferase; IMG reference gene:2505285081; PFAM: Sulfotransferase domain YP_004626578.1 KEGG: pdi:BDI_2788 putative lipopolysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285082; PFAM: Polysaccharide biosynthesis protein YP_004626579.1 InterPro IPR019270; KEGG: sti:Sthe_3021 protein of unknown function DUF2283; PFAM: Protein of unknown function DUF2283; SPTR: Putative uncharacterized protein; IMG reference gene:2505285083; PFAM: Protein of unknown function (DUF2283) YP_004626580.1 InterPro IPR006442; KEGG: ddf:DEFDS_0549 prevent-host-death family protein; SPTR: Prevent-host-death family protein; TIGRFAM: prevent-host-death family protein; IMG reference gene:2505285085; PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein YP_004626581.1 KEGG: ddf:DEFDS_0548 plasmid stabilization system; SPTR: Plasmid stabilization system; IMG reference gene:2505285086; PFAM: Plasmid maintenance system killer protein; TIGRFAM: addiction module toxin, RelE/StbE family YP_004626582.1 COGs: COG1785 Alkaline phosphatase; InterPro IPR001952; KEGG: dsa:Desal_1742 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; SPTR: Alkaline phosphatase; IMG reference gene:2505285087; PFAM: Alkaline phosphatase YP_004626583.1 COGs: COG5438 multitransmembrane protein; InterPro IPR012507; KEGG: dsa:Desal_1743 YibE/F family protein; PFAM: YibE/F family protein; SPTR: YibE/F family protein; IMG reference gene:2505285088; PFAM: YibE/F-like protein YP_004626584.1 COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase and inactivated derivative; IMG reference gene:2505285090; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004626585.1 IMG reference gene:2505285091 YP_004626586.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR006675:IPR003607:IPR002646:IPR006674; KEGG: dak:DaAHT2_1316 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; IMG reference gene:2505285092; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG YP_004626587.1 COGs: COG2352 Phosphoenolpyruvate carboxylase; InterPro IPR001449; KEGG: mno:Mnod_4503 phosphoenolpyruvate carboxylase; SPTR: Phosphoenolpyruvate carboxylase; IMG reference gene:2505285093 YP_004626588.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807:IPR000644; KEGG: drt:Dret_2453 Cl-channel voltage-gated family protein; PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SPTR: Cl-channel voltage-gated family protein; IMG reference gene:2505285094; PFAM: CBS domain; Voltage gated chloride channel YP_004626589.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807:IPR000644; KEGG: aca:ACP_0460 chloride transporter, ClC family; PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein; SPTR: Chloride transporter, ClC family; IMG reference gene:2505285095; PFAM: CBS domain; Voltage gated chloride channel YP_004626590.1 COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: pca:Pcar_1231 putative ATP-binding protein in pho regulon; PFAM: PhoH family protein; SPTR: Putative ATP-binding protein in pho regulon; IMG reference gene:2505285096; PFAM: KH domain; PhoH-like protein YP_004626591.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR001453; KEGG: cbl:CLK_0402 putative molybdopterin binding protein; PFAM: molybdopterin binding domain; SPTR: Putative molybdopterin binding protein; IMG reference gene:2505285097; PFAM: Probable molybdopterin binding domain YP_004626592.1 InterPro IPR003425; KEGG: geo:Geob_1794 protein of unknown function YGGT; PFAM: protein of unknown function YGGT; SPTR: Putative uncharacterized protein; IMG reference gene:2505285098; PFAM: YGGT family YP_004626593.1 InterPro IPR019933:IPR007793; KEGG: bcy:Bcer98_2545 DivIVA family protein; PFAM: DivIVA family protein; SPTR: Cell division initiation protein DivIVA; TIGRFAM: DivIVA domain; IMG reference gene:2505285099; PFAM: DivIVA protein; TIGRFAM: DivIVA domain YP_004626594.1 COGs: COG1872 conserved hypothetical protein; InterPro IPR005228:IPR003746; KEGG: slp:Slip_0824 protein of unknown function DUF167; PFAM: protein of unknown function DUF167; SPTR: Putative uncharacterized protein; IMG reference gene:2505285100; PFAM: Uncharacterised ACR, YggU family COG1872; TIGRFAM: TIGR00251 family protein YP_004626595.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005833:IPR006402:IPR006439:IPR005834; KEGG: rsd:TGRD_051 putative phosphatase/phosphohexomutase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Putative phosphatase/phosphohexomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; IMG reference gene:2505285101; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_004626596.1 COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR011023:IPR018314:IPR001678; KEGG: mtp:Mthe_0282 NOL1/NOP2/sun family RNA methylase; PFAM: Fmu (Sun) domain protein; PRIAM: tRNA (cytosine-5-)-methyltransferase; SPTR: Ribosomal RNA methyltransferase NOP2; TIGRFAM: RNA methylase, NOL1/NOP2/sun family; IMG reference gene:2505285102; PFAM: NOL1/NOP2/sun family; TIGRFAM: NOL1/NOP2/sun family putative RNA methylase YP_004626597.1 KEGG: mtp:Mthe_0283 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285103 YP_004626598.1 COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit; InterPro IPR017896:IPR017900:IPR007516:IPR007525; KEGG: dol:Dole_1150 coenzyme F420 hydrogenase/dehydrogenase beta subunit; PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; SPTR: Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; IMG reference gene:2505285104; PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus YP_004626599.1 COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterPro IPR017896:IPR017900:IPR006076; KEGG: apo:Arcpr_1555 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: FAD dependent oxidoreductase; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; manually curated; selenocysteine-containing protein; IMG reference gene:2505285105; PFAM: 4Fe-4S binding domain YP_004626600.1 COGs: COG1150 Heterodisulfide reductase subunit C; InterPro IPR017896:IPR017900; KEGG: apo:Arcpr_1554 heterodisulfide reductase subunit C-like protein; SPTR: Heterodisulfide reductase subunit C; IMG reference gene:2505285106; TIGRFAM: CoB--CoM heterodisulfide reductase, subunit C YP_004626601.1 COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: apo:Arcpr_1553 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: CoB--CoM heterodisulfide reductase; IMG reference gene:2505285107; PFAM: Cysteine-rich domain; TIGRFAM: CoB--CoM heterodisulfide reductase, subunit B YP_004626602.1 COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit; InterPro IPR003813; KEGG: tye:THEYE_A1367 methyl viologen-reducing hydrogenase, subunit delta; PFAM: methyl-viologen-reducing hydrogenase delta subunit; SPTR: Methyl viologen-reducing hydrogenase, subunit delta; manually curated; selenocysteine-containing protein; IMG reference gene:2505285108; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit YP_004626603.1 COGs: COG1941 Coenzyme F420-reducing hydrogenase gamma subunit; InterPro IPR006137; KEGG: apo:Arcpr_1551 NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; SPTR: F420-non-reducing hydrogenase iron-sulfur subunit G; IMG reference gene:2505285109; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit YP_004626604.1 COGs: COG3259 Coenzyme F420-reducing hydrogenase alpha subunit; InterPro IPR001501; KEGG: apo:Arcpr_1550 nickel-dependent hydrogenase large subunit; PFAM: nickel-dependent hydrogenase large subunit; SPTR: Nickel-dependent hydrogenase large subunit; IMG reference gene:2505285110; PFAM: Nickel-dependent hydrogenase YP_004626605.1 COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: tye:THEYE_A1363 hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; SPTR: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; IMG reference gene:2505285111; PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease YP_004626606.1 KEGG: ctl:CTLon_0690 putative oxidoreductase; SPTR: Putative oxidoreductase; IMG reference gene:2505285112 YP_004626607.1 InterPro IPR013017:IPR001258; KEGG: dak:DaAHT2_0764 NHL repeat containing protein; PFAM: NHL repeat containing protein; SPTR: NHL repeat containing protein; IMG reference gene:2505285113; PFAM: SMP-30/Gluconolaconase/LRE-like region YP_004626608.1 InterPro IPR011031; KEGG: dak:DaAHT2_0394 doubled CXXCH domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285114; PFAM: Doubled CXXCH motif (Paired_CXXCH_1) YP_004626609.1 InterPro IPR011031; KEGG: dak:DaAHT2_0752 doubled CXXCH domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285115; PFAM: Doubled CXXCH motif (Paired_CXXCH_1) YP_004626610.1 KEGG: dak:DaAHT2_0402 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285116 YP_004626611.1 KEGG: dak:DaAHT2_0401 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285117; PFAM: Curli production assembly/transport component CsgG YP_004626612.1 KEGG: dak:DaAHT2_0400 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285118 YP_004626613.1 KEGG: dak:DaAHT2_0399 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285119 YP_004626614.1 KEGG: dak:DaAHT2_0398 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285120 YP_004626615.1 InterPro IPR010177:IPR011031:IPR003006; KEGG: dak:DaAHT2_0397 cytochrome c family protein; SPTR: Cytochrome C family protein; TIGRFAM: cytochrome C family protein; IMG reference gene:2505285121; PFAM: Doubled CXXCH motif (Paired_CXXCH_1); TIGRFAM: doubled CXXCH domain YP_004626616.1 InterPro IPR010177:IPR011031; KEGG: dak:DaAHT2_0396 cytochrome c family protein; SPTR: Putative uncharacterized protein; TIGRFAM: cytochrome C family protein; IMG reference gene:2505285122; PFAM: Doubled CXXCH motif (Paired_CXXCH_1); TIGRFAM: doubled CXXCH domain YP_004626617.1 InterPro IPR001258; KEGG: dak:DaAHT2_0395 NHL repeat containing protein; PFAM: NHL repeat containing protein; SPTR: NHL repeat containing protein; IMG reference gene:2505285123 YP_004626618.1 KEGG: dak:DaAHT2_0752 doubled CXXCH domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285124; PFAM: Doubled CXXCH motif (Paired_CXXCH_1) YP_004626619.1 InterPro IPR010177:IPR011031; KEGG: dak:DaAHT2_0390 cytochrome c family protein; SPTR: Cytochrome C family protein; TIGRFAM: cytochrome C family protein; IMG reference gene:2505285125; PFAM: Doubled CXXCH motif (Paired_CXXCH_1); TIGRFAM: doubled CXXCH domain YP_004626620.1 COGs: COG3391 conserved hypothetical protein; KEGG: dak:DaAHT2_0393 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285126 YP_004626621.1 InterPro IPR010177:IPR011031; KEGG: dak:DaAHT2_0749 doubled CXXCH domain protein; SPTR: Doubled CXXCH domain protein; TIGRFAM: cytochrome C family protein; IMG reference gene:2505285127; PFAM: Doubled CXXCH motif (Paired_CXXCH_1); TIGRFAM: doubled CXXCH domain YP_004626622.1 KEGG: dak:DaAHT2_0388 putative methyl-accepting chemotaxis sensory transducer; SPTR: Putative methyl-accepting chemotaxis sensory transducer; IMG reference gene:2505285128 YP_004626623.1 COGs: COG1635 Flavoprotein involved in thiazole biosynthesis; InterPro IPR003042:IPR002922; KEGG: mth:MTH1620 ribulose-1,5-biphosphate synthetase; SPTR: Thiazole biosynthesis enzyme; TIGRFAM: thiazole biosynthesis enzyme; IMG reference gene:2505285130; PFAM: Thi4 family; TIGRFAM: thiazole biosynthesis enzyme YP_004626624.1 COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR004393:IPR002638; KEGG: dth:DICTH_0588 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; IMG reference gene:2505285131; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase YP_004626625.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR020441:IPR001789:IPR003593:IPR002078:IPR 002197; KEGG: dal:Dalk_0661 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; IMG reference gene:2505285132; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: Nif-specific regulatory protein YP_004626626.1 InterPro IPR019734:IPR013026; KEGG: dak:DaAHT2_1194 tetratricopeptide TPR_4; SPTR: Tetratricopeptide TPR_4; IMG reference gene:2505285133 YP_004626627.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR020441:IPR003593:IPR002078:IPR001789:IPR 002197; KEGG: dak:DaAHT2_1192 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: AAA ATPase; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; IMG reference gene:2505285134; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004626628.1 COGs: COG1815 Flagellar basal body protein; InterPro IPR006300:IPR019776:IPR001444; KEGG: dak:DaAHT2_1191 flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; SPTR: Flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; IMG reference gene:2505285135; PFAM: Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgB YP_004626629.1 COGs: COG1558 Flagellar basal body rod protein; InterPro IPR006299:IPR010930; KEGG: dak:DaAHT2_1190 flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; SPTR: Flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; IMG reference gene:2505285136; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgC YP_004626630.1 COGs: COG1677 Flagellar hook-basal body protein; InterPro IPR001624; KEGG: tme:Tmel_1126 flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; SPTR: Flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; IMG reference gene:2505285137; PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE YP_004626631.1 COGs: COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; InterPro IPR000067:IPR006182:IPR013556; KEGG: dsa:Desal_1153 flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; SPTR: Flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; IMG reference gene:2505285138; PFAM: Flagellar M-ring protein C-terminal; Secretory protein of YscJ/FliF family; TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) YP_004626632.1 COGs: COG1536 Flagellar motor switch protein; InterPro IPR000090:IPR006668; KEGG: dak:DaAHT2_1187 flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; MgtE intracellular region; SPTR: Flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; IMG reference gene:2505285139; PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG YP_004626633.1 COGs: COG1317 Flagellar biosynthesis/type III secretory pathway protein; InterPro IPR018035; KEGG: dal:Dalk_0669 flagellar assembly protein FliH; PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; SPTR: Flagellar assembly protein FliH; IMG reference gene:2505285140; PFAM: Flagellar assembly protein FliH YP_004626634.1 COGs: COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; InterProIPR005714:IPR003593:IPR020003:IPR004100:IPR 000194; KEGG: dak:DaAHT2_1185 flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; SPTR: Flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; IMG reference gene:2505285141; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; flagellar protein export ATPase FliI YP_004626635.1 KEGG: nth:Nther_1395 flagellar export protein FliJ; SPTR: Flagellar export protein FliJ; IMG reference gene:2505285142; PFAM: Flagellar FliJ protein; TIGRFAM: flagellar export protein FliJ YP_004626636.1 InterPro IPR006668; KEGG: lip:LI1061 hypothetical protein; PFAM: MgtE intracellular region; SPTR: Uncharacterized conserved protein; IMG reference gene:2505285143; PFAM: MgtE intracellular N domain YP_004626637.1 KEGG: dps:DP1766 molybdopterin-guanine dinucleotide biosynthesis protein B; SPTR: Related to molybdopterin-guanine dinucleotide biosynthesis protein B; IMG reference gene:2505285144 YP_004626638.1 COGs: COG2864 Cytochrome b subunit of formate dehydrogenase; InterPro IPR006471; KEGG: nam:NAMH_1309 formate dehydrogenase subunit C; SPTR: Formate dehydrogenase subunit C; TIGRFAM: formate dehydrogenase, gamma subunit; IMG reference gene:2505285145; PFAM: Cytochrome b(N-terminal)/b6/petB; TIGRFAM: formate dehydrogenase, gamma subunit YP_004626639.1 COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017896:IPR017900; KEGG: ddf:DEFDS_1330 formate dehydrogenase subunit beta; SPTR: Formate dehydrogenase, beta subunit; IMG reference gene:2505285146; PFAM: 4Fe-4S binding domain YP_004626640.1 COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterProIPR006311:IPR017909:IPR006655:IPR006963:IPR 006656:IPR006657; KEGG: ddf:DEFDS_1331 formate dehydrogenase subunit alpha; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; PRIAM: Nitrate reductase; SPTR: Formate dehydrogenase, alpha subunit; manually curated; selenocysteine-containing protein; IMG reference gene:2505285147; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain YP_004626641.1 KEGG: ddf:DEFDS_1332 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285148; TIGRFAM: formate dehydrogenase region TAT target YP_004626642.1 COGs: COG3381 Uncharacterized component of anaerobic dehydrogenase; InterPro IPR001849; KEGG: ddf:DEFDS_1333 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285149; PFAM: Nitrate reductase delta subunit YP_004626643.1 InterPro IPR017896:IPR017900; KEGG: dps:DP1772 polyferredoxins; SPTR: Related to polyferredoxins; IMG reference gene:2505285150; PFAM: 4Fe-4S binding domain YP_004626644.1 InterPro IPR010916; KEGG: cyc:PCC7424_5189 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285151; PFAM: Bacterial OB fold (BOF) protein YP_004626645.1 COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: nis:NIS_1052 cation efflux protein; PFAM: cation efflux protein; SPTR: Cation efflux protein; TIGRFAM: cation diffusion facilitator family transporter; IMG reference gene:2505285152; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_004626646.1 COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR002302:IPR001412:IPR015413:IPR013155; KEGG: ddf:DEFDS_0790 leucyl-tRNA synthetase; PFAM: tRNA synthetase valyl/leucyl anticodon-binding; tRNA synthetase class I (M); SPTR: Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; IMG reference gene:2505285153; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family YP_004626647.1 COGs: COG0538 Isocitrate dehydrogenase; InterPro IPR004439:IPR019818:IPR001804; KEGG: hmo:HM1_1471 isocitrate dehydrogenase, nADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; IMG reference gene:2505285154; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type YP_004626648.1 COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001972:IPR001107:IPR018080; KEGG: cpc:Cpar_0824 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Band 7 protein; IMG reference gene:2505285155; PFAM: SPFH domain / Band 7 family YP_004626649.1 KEGG: nam:NAMH_0395 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285156 YP_004626650.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR020441:IPR002078:IPR001789:IPR002197:IPR 003593; KEGG: pph:Ppha_1319 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; IMG reference gene:2505285157; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004626651.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358:IPR003661:IPR003594:IPR005467; KEGG: pmx:PERMA_1548 sensor histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Histidine kinase; IMG reference gene:2505285158; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004626652.1 KEGG: dmo:Dmoj_GI16414 GI16414 gene product from transcript GI16414-RA; SPTR: GI16414; IMG reference gene:2505285159 YP_004626653.1 KEGG: kol:Kole_0653 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285160 YP_004626654.1 COGs: COG4089 membrane protein; InterPro IPR011672; KEGG: sfu:Sfum_0878 hypothetical protein; PFAM: protein of unknown function DUF1614; SPTR: Putative uncharacterized protein; IMG reference gene:2505285161; PFAM: Protein of unknown function (DUF1614) YP_004626655.1 COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: lsa:LSA1342 hypothetical protein; PFAM: Uncharacterised protein family UPF0079, ATPase; SPTR: Putative uncharacterized protein; IMG reference gene:2505285162; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family YP_004626656.1 COGs: COG0063 sugar kinase; InterPro IPR017953:IPR004443:IPR000631; KEGG: adg:Adeg_1759 carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain-containing protein; protein of unknown function UPF0031; SPTR: Carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; IMG reference gene:2505285163; PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF N-terminal region; yjeF C-terminal region, hydroxyethylthiazole kinase-related YP_004626657.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063:IPR015262:IPR012795:IPR012796; KEGG: tye:THEYE_A0896 tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase); PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; SPTR: tRNA(Ile)-lysidine synthase (TRNA(Ile)-lysidinesynthetase) (TRNA(Ile)-2-lysyl-cytidine synthase); TIGRFAM: tRNA(Ile)-lysidine synthetase; manually curated; IMG reference gene:2505285164; PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain YP_004626658.1 KEGG: dak:DaAHT2_0213 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285165 YP_004626659.1 COGs: COG1270 Cobalamin biosynthesis protein CobD/CbiB; InterPro IPR004485; KEGG: dal:Dalk_0457 cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; SPTR: Cobalamin biosynthesis protein CobD; TIGRFAM: cobalamin biosynthesis protein CobD; IMG reference gene:2505285166; PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD YP_004626660.1 COGs: COG2038 NaMN:DMB phosphoribosyltransferase; InterPro IPR017846:IPR003200; KEGG: gem:GM21_3897 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PRIAM: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; SPTR: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; manually curated; IMG reference gene:2505285167; PFAM: Phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_004626661.1 COGs: COG0368 Cobalamin-5-phosphate synthase; InterPro IPR003805:IPR000463; KEGG: mif:Metin_0804 cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; SPTR: Cobalamin 5'-phosphate synthase; IMG reference gene:2505285168; PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase YP_004626662.1 COGs: COG1913 Zn-dependent protease; InterPro IPR012091:IPR012962; KEGG: dth:DICTH_1693 hypothetical protein; PFAM: peptidase zinc-dependent; SPTR: Putative uncharacterized protein; IMG reference gene:2505285169; PFAM: Peptidase family M54 YP_004626663.1 COGs: COG0796 Glutamate racemase; InterPro IPR004391:IPR018187:IPR015942; KEGG: dal:Dalk_5046 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: glutamate racemase; IMG reference gene:2505285170; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase YP_004626664.1 COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: tme:Tmel_1752 flavin reductase domain-containing protein; PFAM: flavin reductase domain protein FMN-binding; SPTR: Flavin reductase domain protein, FMN-binding; IMG reference gene:2505285171; PFAM: Flavin reductase like domain YP_004626665.1 InterPro IPR013026; KEGG: dal:Dalk_1963 TPR repeat-containing protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285172; PFAM: Pilin accessory protein (PilO) YP_004626666.1 COGs: COG4902 conserved hypothetical protein; InterPro IPR019243; KEGG: mfs:MFS40622_1425 protein of unknown function DUF2202; PFAM: Protein of unknown function DUF2202; SPTR: Putative uncharacterized protein; IMG reference gene:2505285173; PFAM: Uncharacterized protein domain (DUF2202) YP_004626667.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: rrs:RoseRS_3963 ribokinase-like domain-containing protein; PFAM: PfkB domain protein; SPTR: PfkB domain protein; IMG reference gene:2505285174; PFAM: pfkB family carbohydrate kinase YP_004626668.1 COGs: COG0059 Ketol-acid reductoisomerase; InterPro IPR013116:IPR000506:IPR013023; KEGG: dds:Ddes_1905 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase; PRIAM: Ketol-acid reductoisomerase; SPTR: Ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; IMG reference gene:2505285175; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase YP_004626669.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dat:HRM2_01380 UbiE2; PFAM: Methyltransferase type 11; SPTR: UbiE2; IMG reference gene:2505285176; PFAM: ubiE/COQ5 methyltransferase family YP_004626670.1 COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: sfu:Sfum_3655 CarD family transcriptional regulator; PFAM: transcription factor CarD; SPTR: Transcriptional regulator, CarD family; IMG reference gene:2505285178; PFAM: CarD-like/TRCF domain YP_004626671.1 COGs: COG4956 Integral membrane protein (PIN domain superfamily); InterPro IPR002716:IPR002792:IPR006596; KEGG: sfu:Sfum_3656 PilT domain-containing protein; PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein PINc; SPTR: PilT protein domain protein; IMG reference gene:2505285179; PFAM: TRAM domain; PIN domain YP_004626672.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterProIPR008284:IPR005110:IPR001453:IPR005111:IPR 020817; KEGG: pth:PTH_2617 molybdopterin biosynthesis enzyme; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV; SPTR: Molybdopterin biosynthesis enzyme; TIGRFAM: molybdenum cofactor synthesis domain protein; IMG reference gene:2505285180; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_004626673.1 COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterProIPR001030:IPR011826:IPR018136:IPR011823:IPR 006251; KEGG: pfu:PF0938 3-isopropylmalate dehydratase large subunit; PFAM: aconitate hydratase domain-containing protein; SPTR: 3-isopropylmalate dehydratase large subunit 1; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; homoaconitate hydratase family protein; IMG reference gene:2505285181; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase family protein YP_004626674.1 COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR000573:IPR011824:IPR011827; KEGG: pth:PTH_0533 3-isopropylmalate dehydratase small subunit; PFAM: aconitate hydratase domain-containing protein; SPTR: 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; IMG reference gene:2505285182; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit YP_004626675.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: mfe:Mefer_0491 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Inner-membrane translocator; IMG reference gene:2505285185; PFAM: Branched-chain amino acid transport system / permease component YP_004626676.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: mfs:MFS40622_0662 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Inner-membrane translocator; IMG reference gene:2505285186; PFAM: Branched-chain amino acid transport system / permease component YP_004626677.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: mvu:Metvu_0680 ABC transporter releated protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Probable branched-chain amino acid transport ATP-binding protein livF; IMG reference gene:2505285187; PFAM: ABC transporter YP_004626678.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: mvu:Metvu_0681 ABC transporter releated protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter releated protein; IMG reference gene:2505285188; PFAM: ABC transporter YP_004626679.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: mfs:MFS40622_0666 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor; IMG reference gene:2505285189; PFAM: Receptor family ligand binding region YP_004626680.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: mfs:MFS40622_0666 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor; IMG reference gene:2505285190; PFAM: Receptor family ligand binding region YP_004626681.1 COGs: COG0466 ATP-dependent Lon protease; InterProIPR001984:IPR008268:IPR003111:IPR003959:IPR 003593:IPR004815; KEGG: dak:DaAHT2_2246 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; AAA ATPase; SPTR: ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; IMG reference gene:2505285191; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease; ATP-dependent protease La YP_004626682.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: gbm:Gbem_3532 ABC-3 protein; PFAM: ABC-3 protein; SPTR: ABC-3 protein; IMG reference gene:2505285192; PFAM: ABC 3 transport family YP_004626683.1 COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: bcr:BCAH187_A4415 putative cation ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: High-affinity zinc uptake system ATP-binding protein znuC; IMG reference gene:2505285193; PFAM: ABC transporter YP_004626684.1 InterPro IPR009698; KEGG: swi:Swit_3224 hypothetical protein; PFAM: protein of unknown function DUF1282; SPTR: Putative uncharacterized protein; IMG reference gene:2505285194; PFAM: Yip1 domain YP_004626685.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR020476:IPR020084:IPR000086; KEGG: tel:tll1077 adenine glycosylase; PFAM: NUDIX hydrolase; SPTR: Adenine glycosylase; IMG reference gene:2505285195; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein YP_004626686.1 COGs: COG0015 Adenylosuccinate lyase; InterProIPR000362:IPR003031:IPR020557:IPR019468:IPR 004769; KEGG: geo:Geob_2894 adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; SPTR: Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; IMG reference gene:2505285196; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase YP_004626687.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: aae:aq_1661 rRNA methylase SpoU; PFAM: tRNA/rRNA methyltransferase (SpoU); PRIAM: tRNA guanosine-2'-O-methyltransferase; SPTR: tRNA guanosine-2'-O-methyltransferase; IMG reference gene:2505285197; PFAM: SpoU rRNA Methylase family YP_004626688.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006224:IPR002942:IPR006145:IPR006225; KEGG: adg:Adeg_1604 pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; IMG reference gene:2505285198; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family YP_004626689.1 KEGG: sul:SYO3AOP1_0621 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285199 YP_004626690.1 COGs: COG0237 Dephospho-CoA kinase; InterPro IPR001977; KEGG: dtu:Dtur_0883 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; IMG reference gene:2505285200; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase YP_004626691.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR005110:IPR001453:IPR005111:IPR020817; KEGG: sat:SYN_02148 molybdopterin biosynthesis MoeA protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV; SPTR: Molybdopterin biosynthesis MoeA protein; TIGRFAM: molybdenum cofactor synthesis domain protein; IMG reference gene:2505285201; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_004626692.1 InterPro IPR001387:IPR013096; KEGG: gur:Gura_0980 XRE family transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; IMG reference gene:2505285202; PFAM: Cupin domain; Helix-turn-helix YP_004626693.1 COGs: COG1586 S-adenosylmethionine decarboxylase; InterPro IPR003826:IPR017716; KEGG: sfu:Sfum_0720 S-adenosylmethionine decarboxylase related; PFAM: S-adenosylmethionine decarboxylase related; SPTR: Adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; IMG reference gene:2505285203; PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Bacillus form YP_004626694.1 COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR020855:IPR006035:IPR005925; KEGG: sfu:Sfum_0721 putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: Agmatinase; TIGRFAM: agmatinase; IMG reference gene:2505285204; PFAM: Arginase family; TIGRFAM: agmatinase YP_004626695.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358:IPR003661:IPR003594:IPR005467; KEGG: drm:Dred_1311 sensory histidine kinase AtoS; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Signal transduction histidine-protein kinase atoS; IMG reference gene:2505285206; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004626696.1 COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; InterPro IPR016299:IPR000926:IPR000422; KEGG: tye:THEYE_A0208 riboflavin biosynthesis protein RibA; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; SPTR: Riboflavin biosynthesis protein RibA; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; IMG reference gene:2505285207; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_004626697.1 COGs: COG0054 Riboflavin synthase beta-chain; InterPro IPR002180; KEGG: adg:Adeg_1979 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; IMG reference gene:2505285208; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004626698.1 COGs: COG0781 Transcription termination factor; InterPro IPR006027:IPR011605; KEGG: dal:Dalk_3316 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; SPTR: N utilization substance protein B homolog; TIGRFAM: transcription antitermination factor NusB; IMG reference gene:2505285209; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB YP_004626699.1 InterPro IPR019734:IPR013026; KEGG: pfh:PFHG_03301 conserved hypothetical protein; SPTR: Pterin-4-alpha-carbinolamine dehydratase family protein; IMG reference gene:2505285210 YP_004626700.1 COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR001775:IPR004846; KEGG: pmx:PERMA_0972 putative pilus; PFAM: type II and III secretion system protein; SPTR: Putative type II secretion system protein; IMG reference gene:2505285211; PFAM: Bacterial type II and III secretion system protein; TIGRFAM: type IVB pilus formation outer membrane protein, R64 PilN family; pilus (MSHA type) biogenesis protein MshL YP_004626701.1 KEGG: uue:UUR10_0551 fibronectin repeat protein; SPTR: Alpha-/beta-galactoside alpha-2,3-sialyltransferase; IMG reference gene:2505285212 YP_004626702.1 KEGG: pfh:PFHG_03359 conserved hypothetical protein; SPTR: Chromosome undetermined scaffold_38, whole genome shotgun sequence; IMG reference gene:2505285213 YP_004626703.1 InterPro IPR007813; KEGG: xfn:XfasM23_1788 fimbrial assembly family protein; PFAM: Fimbrial assembly family protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285214 YP_004626704.1 COGs: COG3267 Type II secretory pathway component ExeA (predicted ATPase); InterPro IPR003593; KEGG: pmx:PERMA_0968 peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; SPTR: General secretion pathway protein, ATPase; IMG reference gene:2505285215; PFAM: Archaeal ATPase YP_004626705.1 COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR003004:IPR018076; KEGG: pmx:PERMA_0978 putative type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Putative type II secretion system protein; IMG reference gene:2505285216; PFAM: Bacterial type II secretion system protein F domain YP_004626706.1 COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482:IPR007831:IPR003593; KEGG: pmx:PERMA_0977 type IV pilus assembly protein TapB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; IMG reference gene:2505285217; PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein YP_004626707.1 InterPro IPR005829:IPR001120:IPR012902; KEGG: pmx:PERMA_0970 putative Ig family protein; SPTR: Putative Ig family protein; IMG reference gene:2505285218; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004626708.1 InterPro IPR001120:IPR012902; KEGG: tcx:Tcr_0472 methylation site; SPTR: Putative uncharacterized protein; IMG reference gene:2505285219; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004626709.1 COGs: COG1001 Adenine deaminase; InterPro IPR006679:IPR003016:IPR006680; KEGG: mfs:MFS40622_0890 adenine deaminase; PFAM: amidohydrolase; PRIAM: Adenine deaminase; SPTR: Adenine deaminase; TIGRFAM: adenine deaminase; IMG reference gene:2505285220; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase YP_004626710.1 COGs: COG2252 Permease; InterPro IPR006043; KEGG: mja:MJ0326 hypothetical protein; PFAM: Xanthine/uracil/vitamin C permease; SPTR: Putative permease MJ0326; IMG reference gene:2505285221; PFAM: Permease family YP_004626711.1 COGs: COG1980 fructose 1 6-bisphosphatase; InterPro IPR002803; KEGG: aae:aq_1790 hypothetical protein; PFAM: protein of unknown function DUF100; SPTR: Putative uncharacterized protein; IMG reference gene:2505285223; PFAM: Fructose-1,6-bisphosphatase YP_004626712.1 COGs: COG1406 inhibitor of MCP methylation homolog of CheC; KEGG: sdn:Sden_0523 CheC-like protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285224 YP_004626713.1 COGs: COG0419 ATPase involved in DNA repair; InterPro IPR007235; KEGG: mif:Metin_0813 SMC domain protein; PFAM: Glycosyltransferase 28 domain; SPTR: DNA double-strand break repair Rad50 ATPase; IMG reference gene:2505285225 YP_004626714.1 COGs: COG0420 DNA repair exonuclease; InterPro IPR004843; KEGG: mta:Moth_1789 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Exonuclease SbcD; IMG reference gene:2505285226; PFAM: Calcineurin-like phosphoesterase YP_004626715.1 COGs: COG1797 Cobyrinic acid a c-diamide synthase; InterPro IPR004484:IPR011698:IPR017929; KEGG: gur:Gura_4184 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; SPTR: Cobyrinic Acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; IMG reference gene:2505285227; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase YP_004626716.1 COGs: COG1010 Precorrin-3B methylase; InterPro IPR002750:IPR000878:IPR006363; KEGG: rrs:RoseRS_0572 precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; SPTR: Precorrin-3 methyltransferase / precorrin-2 dehydrogenase; TIGRFAM: precorrin-3B C17-methyltransferase; IMG reference gene:2505285228; PFAM: Cobalamin synthesis G C-terminus; Tetrapyrrole (Corrin/Porphyrin) Methylases; Cobalamin synthesis G N-terminal; TIGRFAM: precorrin-3B C17-methyltransferase YP_004626717.1 COGs: COG2875 Precorrin-4 methylase; InterPro IPR003043:IPR000878:IPR006362; KEGG: mfe:Mefer_1523 precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PRIAM: Precorrin-4 C(11)-methyltransferase; SPTR: Precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; IMG reference gene:2505285229; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-4 C11-methyltransferase YP_004626718.1 COGs: COG2242 Precorrin-6B methylase 2; InterProIPR006365:IPR000878:IPR003358:IPR012818:IPR 014008; KEGG: dal:Dalk_0449 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; methyltransferase; PRIAM: Precorrin-6Y C(5,15)-methyltransferase (decarboxylating); SPTR: Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; IMG reference gene:2505285230; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Putative methyltransferase; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit YP_004626719.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: dap:Dacet_0167 transport system permease protein; PFAM: transport system permease protein; SPTR: Transport system permease protein; IMG reference gene:2505285231; PFAM: FecCD transport family YP_004626720.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR017871:IPR003439:IPR003593; KEGG: mac:MA3919 iron ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Iron ABC transporter, ATP-binding protein; IMG reference gene:2505285232; PFAM: ABC transporter YP_004626721.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: ddf:DEFDS_2057 iron ABC transporter substrate-binding protein; PFAM: periplasmic binding protein; SPTR: Iron ABC transporter, substrate-binding protein; IMG reference gene:2505285233; PFAM: Periplasmic binding protein YP_004626722.1 COGs: COG4822 Cobalamin biosynthesis protein CbiK Co2+ chelatase; InterPro IPR010388:IPR019758; KEGG: sfu:Sfum_1101 anaerobic cobalt chelatase; PFAM: anaerobic cobalt chelatase; SPTR: Anaerobic cobaltochelatase; IMG reference gene:2505285234; PFAM: Cobalt chelatase (CbiK) YP_004626723.1 COGs: COG2243 Precorrin-2 methylase; InterPro IPR012382:IPR003043:IPR000878:IPR006364; KEGG: dat:HRM2_02310 CbiL; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: CbiL; TIGRFAM: precorrin-2 C20-methyltransferase; IMG reference gene:2505285235; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-2 C20-methyltransferase YP_004626724.1 COGs: COG1903 Cobalamin biosynthesis protein CbiD; InterPro IPR002748; KEGG: nmr:Nmar_0083 cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; SPTR: Putative cobalt-precorrin-6A synthase [deacetylating]; TIGRFAM: cobalamin biosynthesis protein CbiD; IMG reference gene:2505285236; PFAM: CbiD; TIGRFAM: cobalamin biosynthesis protein CbiD YP_004626725.1 COGs: COG2082 Precorrin isomerase; InterPro IPR003722; KEGG: amt:Amet_0069 precorrin-8X methylmutase CbiC/CobH; PFAM: Precorrin-8X methylmutase CbiC/CobH; PRIAM: Precorrin-8X methylmutase; SPTR: Precorrin-8X methylmutase; IMG reference gene:2505285237; PFAM: Precorrin-8X methylmutase YP_004626726.1 COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286:IPR003084; KEGG: sat:SYN_00740 histone deacetylase family protein; PFAM: histone deacetylase superfamily; SPTR: Histone deacetylase family protein; IMG reference gene:2505285238; PFAM: Histone deacetylase domain YP_004626727.1 COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: cti:RALTA_A2872 conserved hypothetical protein; putative antibiotic resistance protein MarC family; PFAM: multiple antibiotic resistance (MarC)-related protein; SPTR: Probable multiple antibiotic resistance protein MarC; IMG reference gene:2505285239; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family YP_004626728.1 COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143:IPR004408; KEGG: dak:DaAHT2_0465 biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; SPTR: Biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; IMG reference gene:2505285240; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region YP_004626729.1 COGs: COG2003 DNA repair protein; InterPro IPR020891:IPR001405; KEGG: dps:DP0715 DNA repair protein RadC; PFAM: DNA repair protein RadC; SPTR: Related to DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; IMG reference gene:2505285241; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc YP_004626730.1 COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451:IPR000537; KEGG: dat:HRM2_31890 IspH; PFAM: LytB protein; UbiA prenyltransferase; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: IspH; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; IMG reference gene:2505285242; PFAM: LytB protein; UbiA prenyltransferase family; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) YP_004626731.1 COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR016192:IPR002125; KEGG: dat:HRM2_17420 putative riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Putative riboflavin biosynthesis protein ribD; IMG reference gene:2505285243; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_004626732.1 COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR016431:IPR007197; KEGG: dak:DaAHT2_1232 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; IMG reference gene:2505285248; PFAM: Radical SAM superfamily YP_004626733.1 COGs: COG0309 Hydrogenase maturation factor; InterPro IPR011854:IPR000728:IPR010918; KEGG: ana:alr0698 hydrogenase expression/formation protein; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; SPTR: Hydrogenase expression/formation protein; TIGRFAM: hydrogenase expression/formation protein HypE; IMG reference gene:2505285249; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: hydrogenase expression/formation protein HypE YP_004626734.1 COGs: COG0162 Tyrosyl-tRNA synthetase; InterPro IPR002307:IPR001412:IPR002305:IPR002942; KEGG: dde:Dde_0228 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; IMG reference gene:2505285250; PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase YP_004626735.1 COGs: COG1322 conserved hypothetical protein; InterPro IPR003798; KEGG: hna:Hneap_0053 protein of unknown function DUF195; PFAM: protein of unknown function DUF195; SPTR: Putative uncharacterized protein; IMG reference gene:2505285251; PFAM: RmuC family YP_004626736.1 KEGG: tye:THEYE_A0863 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285252 YP_004626737.1 COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterProIPR000399:IPR012001:IPR012000:IPR011766:IPR 012846; KEGG: tye:THEYE_A1275 acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; SPTR: Acetolactate synthase; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; IMG reference gene:2505285253; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type YP_004626738.1 COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR002912:IPR019455:IPR004789; KEGG: dak:DaAHT2_0726 acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; SPTR: Acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; IMG reference gene:2505285254; PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit YP_004626739.1 COGs: COG0474 Cation transport ATPase; InterProIPR001757:IPR000695:IPR018303:IPR022272:IPR 004014:IPR008250:IPR005834:IPR006068; KEGG: tpe:Tpen_0197 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: ATPase, P-type (Transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; IMG reference gene:2505285255; PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; Cation transporter/ATPase, N-terminus; haloacid dehalogenase-like hydrolase; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004626740.1 COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708:IPR006151:IPR011342; KEGG: tko:TK0265 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; SPTR: Probable shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; IMG reference gene:2505285256; PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase YP_004626741.1 COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; InterPro IPR016228:IPR006264:IPR001986; KEGG: dak:DaAHT2_0008 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; IMG reference gene:2505285257; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase YP_004626742.1 COGs: COG0703 Shikimate kinase; InterPro IPR000623; KEGG: dal:Dalk_1763 shikimate kinase; PFAM: shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; IMG reference gene:2505285258; PFAM: Shikimate kinase YP_004626743.1 InterPro IPR005829; KEGG: ccs:CCNA_01817 nitrogen assimilation regulatory protein NtrX; SPTR: AmphC; IMG reference gene:2505285260 YP_004626744.1 KEGG: sat:SYN_01836 MreB-like ATPase involved in cell division; SPTR: Putative uncharacterized protein; IMG reference gene:2505285261 YP_004626745.1 KEGG: dvi:Dvir_GJ22244 GJ22244 gene product from transcript GJ22244-RA; SPTR: GA18591; IMG reference gene:2505285262 YP_004626746.1 KEGG: hth:HTH_0126 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285263 YP_004626747.1 KEGG: ppd:Ppro_0260 protein-disulfide isomerase; SPTR: Protein-disulfide isomerase; IMG reference gene:2505285264 YP_004626748.1 KEGG: sat:SYN_01859 hypothetical protein; SPTR: Hypothetical membrane protein; IMG reference gene:2505285265 YP_004626749.1 InterPro IPR009838; KEGG: ppd:Ppro_3782 hypothetical protein; SPTR: Conserved hypothetical membrane protein; TIGRFAM: type IV conjugative transfer system protein TraL; IMG reference gene:2505285266; PFAM: TraL protein; TIGRFAM: type IV conjugative transfer system protein TraL YP_004626750.1 KEGG: sat:SYN_01861 sex pilus assembly/synthesis protein; SPTR: Hypothetical sex pilus assembly and synthesis protein; IMG reference gene:2505285267; PFAM: TraE protein; TIGRFAM: type IV conjugative transfer system protein TraE YP_004626751.1 KEGG: sat:SYN_01862 hypothetical protein; SPTR: Hypothetical exported protein; IMG reference gene:2505285268; PFAM: TraK protein YP_004626752.1 KEGG: sat:SYN_01863 pilus assembly protein; SPTR: Pilus assembly protein; IMG reference gene:2505285269; PFAM: Bacterial conjugation TrbI-like protein YP_004626753.1 KEGG: sat:SYN_01864 hypothetical protein; SPTR: Hypothetical exported protein; IMG reference gene:2505285270; PFAM: Type IV conjugative transfer system lipoprotein (TraV) YP_004626754.1 KEGG: brm:Bmur_2211 peptidoglycan-binding lysin domain protein; SPTR: Peptidoglycan-binding lysin domain protein; IMG reference gene:2505285271 YP_004626755.1 COGs: COG4959 Type IV secretory pathway protease TraF; InterPro IPR000223:IPR019533; KEGG: gdj:Gdia_2802 conjugal transfer protein precursor; PFAM: Peptidase S26, conserved region; SPTR: Conjugal transfer protein; IMG reference gene:2505285272; PFAM: Peptidase S26 YP_004626756.1 KEGG: sat:SYN_01873 hypothetical protein; SPTR: Hypothetical exported protein; IMG reference gene:2505285273 YP_004626757.1 COGs: COG1569 nucleic acid-binding protein contains PIN domain; InterPro IPR002716:IPR006596:IPR002850; KEGG: tye:THEYE_A1622 hypothetical protein; PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; SPTR: Nucleotide binding protein PINc; IMG reference gene:2505285274; PFAM: PIN domain; TIGRFAM: putative toxin-antitoxin system toxin component, PIN family YP_004626758.1 KEGG: lbl:LBL_0974 ribbon-helix-helix protein; SPTR: Ribbon-helix-helix protein; IMG reference gene:2505285275; PFAM: Ribbon-helix-helix protein, copG family YP_004626759.1 KEGG: tmz:Tmz1t_0115 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285276 YP_004626760.1 InterPro IPR010927; KEGG: enc:ECL_B077 putative pilus assembly protein; PFAM: TraH family protein; SPTR: Putative pilus assembly protein (Hypothetical protein); IMG reference gene:2505285277; PFAM: Conjugative relaxosome accessory transposon protein YP_004626761.1 KEGG: sat:SYN_01875 DNA transfer and F pilus assembly protein; SPTR: DNA transfer and F pilus assembly protein; IMG reference gene:2505285278; PFAM: TraG-like protein, N-terminal region YP_004626762.1 KEGG: gga:771369 family with sequence similarity 8, member A1; IMG reference gene:2505285279 YP_004626763.1 KEGG: sas:SAS0044 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285280 YP_004626764.1 InterPro IPR020579; KEGG: tva:TVAG_210560 trichohyalin; PFAM: Exonuclease VII, large subunit-like; SPTR: Trichohyalin, putative; IMG reference gene:2505285281; PFAM: Exonuclease VII, large subunit YP_004626765.1 IMG reference gene:2505285282 YP_004626766.1 KEGG: dak:DaAHT2_2027 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285283 YP_004626767.1 KEGG: sgo:SGO_0373 malate permease; SPTR: Similar to precorrin-6 methyltransferase CbiE; IMG reference gene:2505285284 YP_004626768.1 KEGG: bth:BT_1254 hypothetical protein; IMG reference gene:2505285285 YP_004626769.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR011344; KEGG: pca:Pcar_0643 ssDNA-binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; IMG reference gene:2505285286; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_004626770.1 KEGG: sat:SYN_01891 hypothetical protein; SPTR: Na(+)/H(+) antiporter nhaA 1; IMG reference gene:2505285287 YP_004626771.1 KEGG: tma:TM1134 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285288 YP_004626772.1 KEGG: cal:CaO19.1877 potential G-patch domain protein, similar to S. cerevisiae YLR271W; SPTR: Putative uncharacterized protein; IMG reference gene:2505285289 YP_004626773.1 InterPro IPR009649; KEGG: glo:Glov_0311 TraU family protein; PFAM: TraU family protein; SPTR: TraU family protein; IMG reference gene:2505285290; PFAM: TraU protein YP_004626774.1 InterPro IPR019106; KEGG: ppd:Ppro_0250 hypothetical protein; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; SPTR: Conserved hypothetical cytosolic protein; IMG reference gene:2505285292; PFAM: Type-F conjugative transfer system pilin assembly protein YP_004626775.1 KEGG: mmu:216197 cytoskeleton-associated protein 4; SPTR: Cytoskeleton-associated protein 4; IMG reference gene:2505285293 YP_004626776.1 KEGG: glo:Glov_0314 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285294 YP_004626777.1 KEGG: glo:Glov_0315 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285295 YP_004626778.1 COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: sat:SYN_01865 sex pilus assembly protein; SPTR: Sex pilus assembly protein; IMG reference gene:2505285296; PFAM: F pilus assembly Type-IV secretion system for plasmid transfer; TIGRFAM: type-IV secretion system protein TraC YP_004626779.1 KEGG: dau:Daud_0511 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285297; TIGRFAM: YgiT-type zinc finger domain YP_004626780.1 KEGG: mta:Moth_1799 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285298 YP_004626781.1 COGs: COG4227 Antirestriction protein; InterPro IPR017113:IPR013610; KEGG: ecq:ECED1_3533 hypothetical protein; PFAM: domain of unknown function DUF1738; SPTR: Probable DNA primase; IMG reference gene:2505285299; PFAM: Domain of unknown function (DUF1738) YP_004626782.1 KEGG: saf:SULAZ_0343 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285300 YP_004626783.1 KEGG: fpl:Ferp_2046 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285301; PFAM: Protein of unknown function (DUF736) YP_004626784.1 InterPro IPR007404:IPR006674; KEGG: sat:SYN_01887 metal dependent phosphohydrolases; PFAM: metal-dependent phosphohydrolase HD sub domain; membrane-bound metal-dependent hydrolase; SPTR: Metal dependent phosphohydrolases; IMG reference gene:2505285302; PFAM: HD domain; Predicted membrane-bound metal-dependent hydrolase (DUF457) YP_004626785.1 KEGG: gsu:GSU2122 TraG family protein; SPTR: TraG family protein; IMG reference gene:2505285303; PFAM: TraG/TraD family YP_004626786.1 InterPro IPR002716:IPR006596; KEGG: saf:SULAZ_0262 putative PIN domain protein; PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; SPTR: Putative PIN domain protein; IMG reference gene:2505285304; PFAM: PIN domain YP_004626787.1 KEGG: mdo:100026581 similar to ATP-binding cassette transporter sub-family A member 14; SPTR: Putative uncharacterized protein; IMG reference gene:2505285305 YP_004626788.1 KEGG: tps:THAPSDRAFT_36310 hypothetical protein; SPTR: Predicted protein; IMG reference gene:2505285306 YP_004626789.1 KEGG: hps:HPSH_02420 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285307; PFAM: Protein of unknown function DUF88 YP_004626790.1 InterPro IPR001387; KEGG: rha:RHA1_ro11274 repressor protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative transcription regulator; IMG reference gene:2505285308; PFAM: Helix-turn-helix YP_004626791.1 KEGG: tcr:508987.30 protein kinase; SPTR: Protein kinase, putative; IMG reference gene:2505285309 YP_004626792.1 KEGG: pgu:PGUG_04933 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285310; PFAM: ParB-like nuclease domain YP_004626793.1 KEGG: vei:Veis_1966 putative indolepyruvate oxidoreductase subunit B; SPTR: Indolepyruvate ferredoxin oxidoreductase beta subunit; IMG reference gene:2505285311 YP_004626794.1 KEGG: tcr:506905.10 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285312 YP_004626795.1 KEGG: tbr:Tb927.1.620 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285313 YP_004626796.1 KEGG: dre:567594 similar to CG15877 CG15877-PA; SPTR: Normocyte binding protein 2a; IMG reference gene:2505285314 YP_004626797.1 KEGG: dap:Dacet_0701 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285315; TIGRFAM: DNA binding domain, excisionase family YP_004626798.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: dap:Dacet_0700 integrase family protein; PFAM: integrase family protein; SPTR: Phage integrase family protein; IMG reference gene:2505285316; PFAM: Phage integrase family YP_004626799.1 COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: sat:SYN_02617 trk system potassium uptake protein; PFAM: cation transporter; SPTR: Trk system potassium uptake protein; IMG reference gene:2505285317; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family YP_004626800.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR006036:IPR003148:IPR006037; KEGG: sat:SYN_02618 potassium transporter peripheral membrane component; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: Trk system potassium uptake protein; IMG reference gene:2505285318; PFAM: TrkA-N domain; TrkA-C domain YP_004626801.1 COGs: COG0141 Histidinol dehydrogenase; InterPro IPR012131:IPR001692; KEGG: sfu:Sfum_3299 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; IMG reference gene:2505285319; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase YP_004626802.1 COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: mpd:MCP_0732 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: Putative uncharacterized protein; IMG reference gene:2505285320; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_004626803.1 COGs: COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I C-terminal domain; InterPro IPR004647; KEGG: dak:DaAHT2_1200 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; SPTR: Fe-S type hydro-lyases tartrate/fumarate beta region; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; IMG reference gene:2505285321; PFAM: Fumarase C-terminus; TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region YP_004626804.1 COGs: COG1160 GTPase; InterPro IPR006073:IPR016484:IPR002917:IPR005225; KEGG: dal:Dalk_4099 GTP-binding protein EngA; PFAM: GTP-binding protein HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; IMG reference gene:2505285322; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; GTP-binding protein Era; small GTP-binding protein domain YP_004626805.1 COGs: COG0104 Adenylosuccinate synthase; InterPro IPR001114:IPR018220:IPR000408; KEGG: dps:DP1480 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; IMG reference gene:2505285323; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase YP_004626806.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterProIPR005479:IPR005481:IPR005482:IPR011761:IPR 011764; KEGG: dak:DaAHT2_0460 pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; PRIAM: Pyruvate carboxylase; SPTR: Pyruvate carboxylase; IMG reference gene:2505285324; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain YP_004626807.1 COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; InterPro IPR000438:IPR013838:IPR020582; KEGG: dak:DaAHT2_0461 acetyl-CoA carboxylase; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-CoA carboxylase; IMG reference gene:2505285325; PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YP_004626808.1 KEGG: dps:DP3087 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285326 YP_004626809.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505285327; PFAM: Transposase IS200 like YP_004626810.1 KEGG: cts:Ctha_2501 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285329 YP_004626811.1 COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR006260; KEGG: hth:HTH_1676 TonB family protein; PFAM: TonB domain; SPTR: TonB family protein; TIGRFAM: TonB family protein; IMG reference gene:2505285330; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004626812.1 COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: brm:Bmur_0273 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport exbD protein; IMG reference gene:2505285331; PFAM: Biopolymer transport protein ExbD/TolR YP_004626813.1 COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: min:Minf_0249 MotA/TolQ/ExbB proton channel family protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel family protein; IMG reference gene:2505285332; PFAM: MotA/TolQ/ExbB proton channel family YP_004626814.1 COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR000523:IPR003593; KEGG: adg:Adeg_0556 magnesium chelatase; PFAM: magnesium chelatase ChlI subunit; PRIAM: Magnesium chelatase; SMART: AAA ATPase; SPTR: Magnesium chelatase; IMG reference gene:2505285333; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: magnesium chelatase ATPase subunit I YP_004626815.1 COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR011704:IPR002035:IPR003593; KEGG: cts:Ctha_2443 magnesium chelatase; PFAM: ATPase associated with various cellular activities AAA_5; von Willebrand factor type A; PRIAM: Magnesium chelatase; SMART: von Willebrand factor type A; AAA ATPase; SPTR: Magnesium chelatase; IMG reference gene:2505285334; PFAM: von Willebrand factor type A domain; AAA domain (dynein-related subfamily); TIGRFAM: magnesium chelatase ATPase subunit D YP_004626816.1 KEGG: scl:sce3839 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285335 YP_004626817.1 InterPro IPR018391; KEGG: dal:Dalk_4066 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285336 YP_004626818.1 COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: dal:Dalk_4068 cobalt transport protein; PFAM: cobalt transport protein; SPTR: Cobalt transport protein; IMG reference gene:2505285337; PFAM: Cobalt transport protein YP_004626819.1 COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR017871:IPR002078:IPR003439:IPR003593; KEGG: tpe:Tpen_1541 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; IMG reference gene:2505285338; PFAM: ABC transporter YP_004626820.1 KEGG: nhl:Nhal_1747 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285339 YP_004626821.1 KEGG: dal:Dalk_4067 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285341 YP_004626822.1 KEGG: fpl:Ferp_1591 NurA domain protein; SPTR: NurA domain protein; IMG reference gene:2505285342 YP_004626823.1 COGs: COG1865 conserved hypothetical protein; InterPro IPR002808; KEGG: dal:Dalk_4062 protein of unknown function DUF105; PFAM: protein of unknown function DUF105; SPTR: Putative uncharacterized protein; IMG reference gene:2505285344; PFAM: Adenosylcobinamide amidohydrolase YP_004626824.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: glo:Glov_3556 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; IMG reference gene:2505285345; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent vitamin B12 receptor YP_004626825.1 COGs: COG0409 Hydrogenase maturation factor; InterPro IPR002780; KEGG: gsu:GSU0308 hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; SPTR: Hydrogenase expression/formation protein HypD; TIGRFAM: hydrogenase expression/formation protein HypD; IMG reference gene:2505285346; PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD YP_004626826.1 COGs: COG1801 conserved hypothetical protein; InterPro IPR002763; KEGG: sat:SYN_01732 putative cytoplasmic protein; PFAM: protein of unknown function DUF72; SPTR: Hypothetical cytosolic protein; IMG reference gene:2505285347; PFAM: Protein of unknown function DUF72 YP_004626827.1 KEGG: ara:Arad_12492 prenyltransferase, beta subunit; SPTR: Prenyltransferase, beta subunit; IMG reference gene:2505285348 YP_004626828.1 InterPro IPR002583; KEGG: ddf:DEFDS_1532 30S ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; IMG reference gene:2505285349; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20 YP_004626829.1 COGs: COG3635 phosphoglycerate mutase AP superfamily; InterPro IPR004456:IPR019304:IPR006124; KEGG: dak:DaAHT2_2657 phosphonopyruvate decarboxylase-related protein; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein; PRIAM: Phosphoglycerate mutase; SPTR: Cofactor-independent phosphoglycerate mutase, archaeal; TIGRFAM: phosphonopyruvate decarboxylase-related protein; IMG reference gene:2505285351; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Metalloenzyme superfamily; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form YP_004626830.1 COGs: COG1056 Nicotinamide mononucleotide adenylyltransferase; InterPro IPR004820:IPR004821; KEGG: sfu:Sfum_3306 nicotinamide mononucleotide adenylyltransferase; PFAM: cytidylyltransferase; SPTR: Nicotinamide mononucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; IMG reference gene:2505285352; PFAM: Cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain YP_004626831.1 COGs: COG2145 Hydroxyethylthiazole kinase sugar kinase family; InterPro IPR000417:IPR011144; KEGG: tsi:TSIB_0465 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase; PRIAM: Hydroxyethylthiazole kinase; SPTR: Hydroxyethylthiazole kinase; IMG reference gene:2505285353; PFAM: Hydroxyethylthiazole kinase family; TIGRFAM: hydroxyethylthiazole kinase YP_004626832.1 COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733; KEGG: pfu:PF1334 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; SPTR: Thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; IMG reference gene:2505285354; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase YP_004626833.1 COGs: COG2005 N-terminal domain of molybdenum-binding protein; InterPro IPR000847; KEGG: tye:THEYE_A0050 molybdenum transport regulatory protein ModE; PFAM: regulatory protein LysR; SPTR: Molybdenum transport regulatory protein ModE; IMG reference gene:2505285355; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain YP_004626834.1 COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR013548:IPR000182; KEGG: tye:THEYE_A0040 acetyl-CoA synthetase; PFAM: GCN5-related N-acetyltransferase; Plexin, cytoplasmic RasGAP domain; SPTR: Acetyl-CoA synthetase; IMG reference gene:2505285356; PFAM: Acetyltransferase (GNAT) family YP_004626835.1 COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: dps:DP2831 hypothetical protein; PFAM: histone deacetylase superfamily; SPTR: Putative uncharacterized protein; IMG reference gene:2505285357; PFAM: Histone deacetylase domain YP_004626836.1 COGs: COG1881 Phospholipid-binding protein; InterPro IPR008914:IPR005247; KEGG: drt:Dret_1202 PEBP family protein; PFAM: PEBP family protein; SPTR: PEBP family protein; IMG reference gene:2505285358; PFAM: Phosphatidylethanolamine-binding protein; TIGRFAM: Raf kinase inhibitor-like protein, YbhB/YbcL family YP_004626837.1 COGs: COG4664 TRAP-type mannitol/chloroaromatic compound transport system large permease component; InterPro IPR010656:IPR004681; KEGG: rmr:Rmar_2648 TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; IMG reference gene:2505285359; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit YP_004626838.1 COGs: COG4665 TRAP-type mannitol/chloroaromatic compound transport system small permease component; InterPro IPR007387; KEGG: ava:Ava_0885 tripartite ATP-independent periplasmic transporter DctQ; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; SPTR: Tripartite ATP-independent periplasmic transporter, DctQ component; IMG reference gene:2505285360; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component YP_004626839.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR012257:IPR017900:IPR004017:IPR017896; KEGG: tye:THEYE_A0667 iron-sulfur cluster-binding protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: Iron-sulfur cluster-binding protein; IMG reference gene:2505285361; PFAM: Cysteine-rich domain YP_004626840.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113:IPR016166; KEGG: tye:THEYE_A0668 glycolate oxidase subunit; PFAM: FAD linked oxidase domain protein; SPTR: Glycolate oxidase subunit; IMG reference gene:2505285362; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD YP_004626841.1 COGs: COG4663 TRAP-type mannitol/chloroaromatic compound transport system periplasmic component; InterPro IPR018389:IPR017909:IPR006311; KEGG: ttj:TTHA0196 transporter, periplasmic component; PFAM: Extracellular solute-binding protein, family 7; SPTR: Transporter, periplasmic component; IMG reference gene:2505285363; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004626842.1 COGs: COG2119 membrane protein; InterPro IPR001727; KEGG: amt:Amet_4793 hypothetical protein; PFAM: protein of unknown function UPF0016; SPTR: Putative uncharacterized protein; IMG reference gene:2505285364; PFAM: Uncharacterized protein family UPF0016 YP_004626843.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: dol:Dole_1440 glycosyl transferase family protein; PFAM: glycosyl transferase family 39; SPTR: Glycosyl transferase family 39; IMG reference gene:2505285365; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004626844.1 COGs: COG1526 Uncharacterized protein required for formate dehydrogenase activity; InterPro IPR003786; KEGG: dps:DP1777 formate dehydrogenase accessory protein; PFAM: formate dehydrogenase subunit FdhD; SPTR: Related to formate dehydrogenase accessory protein; TIGRFAM: formate dehydrogenase family accessory protein FdhD; IMG reference gene:2505285366; PFAM: FdhD/NarQ family; TIGRFAM: formate dehydrogenase family accessory protein FdhD YP_004626845.1 COGs: COG1773 Rubredoxin; InterPro IPR001052:IPR018527:IPR004039; KEGG: tnp:Tnap_0455 rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; IMG reference gene:2505285367; PFAM: Rubredoxin YP_004626846.1 COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004013:IPR011708:IPR004365:IPR003141:IPR 004805; KEGG: dak:DaAHT2_1400 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; IMG reference gene:2505285368; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_004626847.1 KEGG: mfs:MFS40622_1358 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285369 YP_004626848.1 KEGG: cbk:CLL_A1976 putative transcriptional regulator, Crp/Fnr family; SPTR: Putative transcriptional regulator, Crp/Fnr family; IMG reference gene:2505285370 YP_004626849.1 KEGG: dal:Dalk_0099 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285371 YP_004626850.1 COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein; InterPro IPR016431:IPR007197; KEGG: gur:Gura_2282 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; IMG reference gene:2505285372; PFAM: Radical SAM superfamily YP_004626851.1 InterPro IPR004843; KEGG: dol:Dole_0345 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Metallophosphoesterase; IMG reference gene:2505285373; PFAM: Calcineurin-like phosphoesterase YP_004626852.1 KEGG: mxa:MXAN_0742 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285374 YP_004626853.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104:IPR011932; KEGG: sat:SYN_00952 integrase/recombinase; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Integrase/recombinase; TIGRFAM: tyrosine recombinase XerD; IMG reference gene:2505285375; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerC; tyrosine recombinase XerD YP_004626854.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR000644:IPR002646; KEGG: tjr:TherJR_1640 polynucleotide adenylyltransferase region; PFAM: Polynucleotide adenylyltransferase region; CBS domain containing protein; SPTR: Polynucleotide adenylyltransferase region; IMG reference gene:2505285376; PFAM: CBS domain; Poly A polymerase head domain YP_004626855.1 COGs: COG1994 Zn-dependent protease; InterPro IPR008915; KEGG: drt:Dret_0766 peptidase M50; PFAM: peptidase M50; SPTR: Peptidase M50; IMG reference gene:2505285377; PFAM: Peptidase family M50 YP_004626856.1 KEGG: dat:HRM2_40610 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285379 YP_004626857.1 COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits; InterPro IPR017900:IPR013580:IPR006067:IPR017896; KEGG: dol:Dole_0748 proto-chlorophyllide reductase 57 kD subunit; PFAM: Proto-chlorophyllide reductase 57 kD subunit; nitrite and sulphite reductase 4Fe-4S region; SPTR: Proto-chlorophyllide reductase 57 kD subunit; IMG reference gene:2505285380; PFAM: 4Fe-4S binding domain; Nitrite and sulphite reductase 4Fe-4S domain; Proto-chlorophyllide reductase 57 kD subunit YP_004626858.1 InterPro IPR017900:IPR017896; KEGG: dak:DaAHT2_2337 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; IMG reference gene:2505285381; PFAM: 4Fe-4S binding domain YP_004626859.1 COGs: COG1543 conserved hypothetical protein; InterPro IPR004300; KEGG: pth:PTH_2228 hypothetical protein; PFAM: glycoside hydrolase family 57; SPTR: Uncharacterized conserved protein; IMG reference gene:2505285382; PFAM: Domain of unknown function (DUF1957); Glycosyl hydrolase family 57 YP_004626860.1 COGs: COG0301 Thiamine biosynthesis ATP pyrophosphatase; InterPro IPR020536; KEGG: pfu:PF1288 putative thiamin biosynthesis protein ThiI; PFAM: Thiamine biosynthesis protein-like; SPTR: Putative thiamin biosynthesis protein thiI; IMG reference gene:2505285383; PFAM: Thiamine biosynthesis protein (ThiI) YP_004626861.1 COGs: COG2105 conserved hypothetical protein; InterPro IPR009288; KEGG: pmx:PERMA_0889 hypothetical protein; PFAM: AIG2 family protein; SPTR: Conserved protein; IMG reference gene:2505285384; PFAM: AIG2-like family YP_004626862.1 COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: hma:rrnAC3218 mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: Mechanosensitive ion channel; IMG reference gene:2505285385; PFAM: Mechanosensitive ion channel YP_004626863.1 KEGG: caa:Caka_2052 protein of unknown function DUF1568; SPTR: Putative uncharacterized protein; IMG reference gene:2505285386; PFAM: Transposase IS200 like YP_004626864.1 COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; InterPro IPR010075:IPR017926; KEGG: dak:DaAHT2_0635 phosphoribosylformylglycinamidine synthase; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase I; IMG reference gene:2505285387; TIGRFAM: phosphoribosylformylglycinamidine synthase I YP_004626865.1 COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR002033; KEGG: dps:DP1763 sec-independent protein translocase protein TatC; PFAM: Sec-independent periplasmic protein translocase; SPTR: Related to Sec-independent protein translocase protein TatC; IMG reference gene:2505285388; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC YP_004626866.1 COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101:IPR017441; KEGG: pmx:PERMA_0102 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: Gamma-glutamyltransferase; IMG reference gene:2505285389; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase YP_004626867.1 COGs: COG2170 conserved hypothetical protein; InterPro IPR006336:IPR011793; KEGG: gvi:gll2294 hypothetical protein; PFAM: glutamate--cysteine ligase GCS2; SPTR: Carboxylate-amine ligase gll2294; IMG reference gene:2505285390; PFAM: Glutamate-cysteine ligase family 2(GCS2); TIGRFAM: carboxylate-amine ligase, YbdK family YP_004626868.1 COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR017439:IPR002933:IPR011650:IPR010168; KEGG: ava:Ava_4094 peptidase M20D, amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: Peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; IMG reference gene:2505285391; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase YP_004626869.1 COGs: COG2033 Desulfoferrodoxin; InterPro IPR004462:IPR002742:IPR004793; KEGG: dak:DaAHT2_2068 desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; SPTR: Desulfoferrodoxin; TIGRFAM: desulfoferrodoxin; IMG reference gene:2505285392; PFAM: Desulfoferrodoxin; Desulfoferrodoxin, N-terminal domain; TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain; desulfoferrodoxin; desulfoferrodoxin ferrous iron-binding domain YP_004626870.1 COGs: COG0426 flavoprotein; InterPro IPR016440:IPR008254; KEGG: dak:DaAHT2_2067 flavodoxin/nitric oxide synthase; PFAM: flavodoxin/nitric oxide synthase; SPTR: Flavodoxin/nitric oxide synthase; IMG reference gene:2505285393; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily YP_004626871.1 KEGG: dal:Dalk_2376 hypothetical protein; SPTR: HEAT; IMG reference gene:2505285394 YP_004626872.1 COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR003739:IPR007197; KEGG: kol:Kole_1669 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; PRIAM: Lysine 2,3-aminomutase; SPTR: Lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; IMG reference gene:2505285395; PFAM: Radical SAM superfamily; TIGRFAM: KamA family protein YP_004626873.1 COGs: COG0613 metal-dependent phosphoesterase (PHP family); InterPro IPR004013:IPR003141; KEGG: dal:Dalk_3059 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: PHP domain protein; IMG reference gene:2505285396; PFAM: PHP domain YP_004626874.1 COGs: COG1458 DNA-binding protein containing PIN domain; InterPro IPR014856; KEGG: tye:THEYE_A0318 hypothetical protein; SPTR: UPF0278 protein kuste3487; TIGRFAM: protein of unknown function UPF0278; IMG reference gene:2505285397; PFAM: UPF0278 family; TIGRFAM: RNA ligase partner, MJ_0950 family YP_004626875.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR013163:IPR004089:IPR000727:IPR003660; KEGG: tna:CTN_1065 methyl-accepting chemotaxis protein 4; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis protein 4; IMG reference gene:2505285398; PFAM: Cache domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004626876.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR020441:IPR002078:IPR001789:IPR002197:IPR 003593; KEGG: dvm:DvMF_0700 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; IMG reference gene:2505285399; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004626877.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR004358:IPR003660:IPR003661:IPR003594:IPR 005467; KEGG: dvm:DvMF_0701 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Integral membrane sensor signal transduction histidine kinase; IMG reference gene:2505285400; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004626878.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: tye:THEYE_A0743 response regulator HsfA; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; IMG reference gene:2505285401; PFAM: Response regulator receiver domain YP_004626879.1 COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192:IPR008279; KEGG: dvm:DvMF_0705 pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; SPTR: Pyruvate, water dikinase; IMG reference gene:2505285402; PFAM: PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain YP_004626880.1 InterPro IPR019088; KEGG: dvm:DvMF_0704 hypothetical protein; PFAM: hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285403; PFAM: Putative transmembrane protein (Alph_Pro_TM); TIGRFAM: conserved hypothetical protein YP_004626881.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: dvm:DvMF_0703 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: Putative uncharacterized protein; IMG reference gene:2505285404; PFAM: Sulfite exporter TauE/SafE YP_004626882.1 KEGG: hsa:6249 CAP-GLY domain containing linker protein 1; SPTR: Restin isoform a variant; IMG reference gene:2505285405 YP_004626883.1 COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterProIPR013027:IPR017900:IPR006076:IPR003953:IPR 017896; KEGG: adg:Adeg_1885 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; IMG reference gene:2505285406; PFAM: Pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase YP_004626884.1 COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit; InterPro IPR003813; KEGG: adg:Adeg_1332 methyl-viologen-reducing hydrogenase delta subunit; PFAM: methyl-viologen-reducing hydrogenase delta subunit; SPTR: Methyl-viologen-reducing hydrogenase delta subunit; IMG reference gene:2505285407; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit YP_004626885.1 InterPro IPR017900:IPR017896; KEGG: sfu:Sfum_1972 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; IMG reference gene:2505285408; PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus YP_004626886.1 InterPro IPR017900:IPR017896; KEGG: slp:Slip_2070 4Fe-4S ferredoxin, iron-sulfur binding protein; SPTR: Ferredoxin; IMG reference gene:2505285409 YP_004626887.1 COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterProIPR001834:IPR012165:IPR008333:IPR001433:IPR 019480:IPR017927; KEGG: dae:Dtox_1281 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein; IMG reference gene:2505285410; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain YP_004626888.1 COGs: COG2703 Hemerythrin; InterPro IPR012312:IPR012827; KEGG: mgm:Mmc1_1585 methyl-accepting chemotaxis sensory transducer; PFAM: Hemerythrin HHE cation binding domain protein; SPTR: Hemerythrin-like, metal-binding; TIGRFAM: hemerythrin-like metal-binding protein; IMG reference gene:2505285411; PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain YP_004626889.1 InterPro IPR002610; KEGG: geo:Geob_1665 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; IMG reference gene:2505285412; PFAM: Rhomboid family YP_004626890.1 KEGG: tye:THEYE_A1270 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285413 YP_004626891.1 KEGG: ddf:DEFDS_0397 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285414 YP_004626892.1 COGs: COG0013 Alanyl-tRNA synthetase; InterProIPR018164:IPR018152:IPR012947:IPR003156:IPR 018165:IPR002318; KEGG: sat:SYN_02026 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; IMG reference gene:2505285416; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase YP_004626893.1 KEGG: pin:Ping_1776 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285417 YP_004626894.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR006179:IPR004843:IPR008334:IPR006420; KEGG: dat:HRM2_09650 UshA; PFAM: 5'-Nucleotidase domain-containing protein; metallophosphoesterase; SPTR: NAD pyrophosphatase/5'-nucleotidase NadN; TIGRFAM: NAD pyrophosphatase/5'-nucleotidase NadN; IMG reference gene:2505285418; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain; TIGRFAM: NAD pyrophosphatase/5'-nucleotidase NadN YP_004626895.1 InterPro IPR001206; KEGG: avn:Avin_44360 hypothetical protein; PFAM: diacylglycerol kinase catalytic region; SPTR: DAG-kinase catalytic domain (Presumed); IMG reference gene:2505285419; PFAM: Diacylglycerol kinase catalytic domain YP_004626896.1 COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: pat:Patl_4048 acetyltransferase; SPTR: Acetyltransferase (Isoleucine patch superfamily)-like; IMG reference gene:2505285420 YP_004626897.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: dol:Dole_0836 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter-related protein; IMG reference gene:2505285421; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_004626898.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: glo:Glov_1865 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; IMG reference gene:2505285422; PFAM: ABC transporter YP_004626899.1 COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: dal:Dalk_1704 phenylacetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: Phenylacetate--CoA ligase; IMG reference gene:2505285423; PFAM: AMP-binding enzyme YP_004626900.1 COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR008915:IPR001478:IPR004387; KEGG: sfu:Sfum_1785 putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: RseP peptidase. Metallo peptidase. MEROPS family M50B; TIGRFAM: membrane-associated zinc metalloprotease; IMG reference gene:2505285425; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP YP_004626901.1 COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821:IPR013512:IPR013644; KEGG: pca:Pcar_1915 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; IMG reference gene:2505285426; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004626902.1 COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: glo:Glov_2713 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; IMG reference gene:2505285427; PFAM: Cytidylyltransferase family YP_004626903.1 COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441:IPR018520; KEGG: hmo:HM1_2261 undecaprenyl diphosphate synthase, putative; PFAM: Di-trans-poly-cis-decaprenylcistransferase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Undecaprenyl diphosphate synthase, putative; TIGRFAM: undecaprenyl diphosphate synthase; IMG reference gene:2505285428; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_004626904.1 COGs: COG0233 Ribosome recycling factor; InterPro IPR015998:IPR002661; KEGG: dtu:Dtur_1200 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: Ribosome-recycling factor; TIGRFAM: ribosome recycling factor; IMG reference gene:2505285429; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor YP_004626905.1 COGs: COG0528 Uridylate kinase; InterPro IPR011817:IPR001048:IPR015963; KEGG: sfu:Sfum_1780 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: Uridylate kinase; TIGRFAM: uridylate kinase; IMG reference gene:2505285430; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase YP_004626906.1 COGs: COG0264 Translation elongation factor Ts; InterPro IPR001816:IPR018101:IPR000449:IPR014039; KEGG: dak:DaAHT2_0968 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; SPTR: Translation elongation factor Ts; TIGRFAM: translation elongation factor Ts; IMG reference gene:2505285431; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts YP_004626907.1 COGs: COG0052 Ribosomal protein S2; InterPro IPR001865:IPR018130:IPR005706; KEGG: drt:Dret_1941 ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; IMG reference gene:2505285432; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type YP_004626908.1 COGs: COG1749 Flagellar hook protein FlgE; InterPro IPR011491:IPR010930:IPR020013; KEGG: dal:Dalk_1015 protein of unknown function DUF1078 domain protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: fagellar hook-basal body protein; IMG reference gene:2505285433; PFAM: Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins YP_004626909.1 COGs: COG1749 Flagellar hook protein FlgE; InterPro IPR019776:IPR011491:IPR020013; KEGG: dvm:DvMF_1808 protein of unknown function DUF1078 domain protein; PFAM: flagellar basal body FlaE domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: fagellar hook-basal body protein; IMG reference gene:2505285434; PFAM: Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins YP_004626910.1 COGs: COG1843 Flagellar hook capping protein; InterPro IPR005648; KEGG: tle:Tlet_1819 flagellar hook capping protein; PFAM: flagellar hook capping protein; SPTR: Flagellar hook capping protein; IMG reference gene:2505285435; PFAM: Flagellar hook capping protein YP_004626911.1 InterPro IPR021136; KEGG: cjr:CJE0040 hypothetical protein; PFAM: Flagellar hook-length control protein-like, C-terminal domain; SPTR: Putative uncharacterized protein; IMG reference gene:2505285436; PFAM: Flagellar hook-length control protein FliK YP_004626912.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR001270:IPR018368:IPR004176:IPR003959:IPR 013093:IPR019489:IPR003593:IPR017730; KEGG: tye:THEYE_A1928 chaperone ClpB 1; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: Chaperone ClpB 1; TIGRFAM: ATP-dependent chaperone ClpB; IMG reference gene:2505285437; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB; type VI secretion ATPase, ClpV1 family YP_004626913.1 COGs: COG0132 Dethiobiotin synthetase; InterPro IPR004472; KEGG: nmc:NMC0686 dithiobiotin synthetase; SPTR: Dethiobiotin synthetase; TIGRFAM: dethiobiotin synthase; IMG reference gene:2505285438; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: dethiobiotin synthase YP_004626914.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: plt:Plut_2067 biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; SPTR: Putative uncharacterized protein; IMG reference gene:2505285439; PFAM: Methyltransferase domain; TIGRFAM: biotin biosynthesis protein BioC YP_004626915.1 COGs: COG2830 conserved hypothetical protein; InterPro IPR007398; KEGG: bfs:BF1615 putative biotin synthesis-related fusion protein; PFAM: protein of unknown function DUF452; SPTR: Putative uncharacterized protein; IMG reference gene:2505285440; PFAM: Protein of unknown function (DUF452) YP_004626916.1 COGs: COG2187 conserved hypothetical protein; InterPro IPR002575; KEGG: tye:THEYE_A1962 Uma3; PFAM: aminoglycoside phosphotransferase; SPTR: Uma3; IMG reference gene:2505285441; PFAM: Chromatin associated protein KTI12 YP_004626917.1 COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002306:IPR001412:IPR002305; KEGG: geo:Geob_3016 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; IMG reference gene:2505285442; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase YP_004626918.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005833:IPR005834:IPR006439; KEGG: phe:Phep_1975 haloacid dehalogenase domain protein hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; IMG reference gene:2505285443; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_004626919.1 COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017900:IPR017896; KEGG: tpe:Tpen_1816 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; IMG reference gene:2505285444; PFAM: 4Fe-4S binding domain YP_004626920.1 COGs: COG2414 Aldehyde:ferredoxin oxidoreductase; InterPro IPR013983:IPR001203; KEGG: tye:THEYE_A0591 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; PRIAM: Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase; SPTR: Aldehyde ferredoxin oxidoreductase; IMG reference gene:2505285445; PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3 YP_004626921.1 KEGG: apo:Arcpr_1635 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285446 YP_004626922.1 COGs: COG2414 Aldehyde:ferredoxin oxidoreductase; InterPro IPR013983:IPR001203; KEGG: cpo:COPRO5265_0137 tungsten-containing aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; PRIAM: Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase; SPTR: Tungsten-containing aldehyde ferredoxin oxidoreductase; IMG reference gene:2505285447; PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3 YP_004626923.1 COGs: COG3276 Selenocysteine-specific translation elongation factor; InterProIPR000795:IPR005829:IPR004161:IPR015190:IPR 015191:IPR005225:IPR004535; KEGG: sfu:Sfum_1220 selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; PRIAM: Sulfate adenylyltransferase; SPTR: Selenocysteine-specific translation elongation factor SelB; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; IMG reference gene:2505285448; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; Elongation factor SelB, winged helix; TIGRFAM: selenocysteine-specific elongation factor SelB; small GTP-binding protein domain; translation elongation factor TU YP_004626924.1 COGs: COG1913 Zn-dependent protease; InterPro IPR012091:IPR012962; KEGG: dth:DICTH_1693 hypothetical protein; PFAM: peptidase zinc-dependent; SPTR: Putative uncharacterized protein; IMG reference gene:2505285449; PFAM: Peptidase family M54 YP_004626925.1 KEGG: dal:Dalk_0810 methyltransferase type 12; SPTR: Methyltransferase type 12; IMG reference gene:2505285450 YP_004626926.1 COGs: COG1354 conserved hypothetical protein; InterPro IPR003768; KEGG: gme:Gmet_1959 condensin subunit ScpA; PFAM: chromosome segregation and condensation protein ScpA; SPTR: Condensin subunit ScpA; IMG reference gene:2505285451; PFAM: ScpA/B protein YP_004626927.1 KEGG: dol:Dole_1955 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285452 YP_004626928.1 COGs: COG1720 conserved hypothetical protein; InterPro IPR001378; KEGG: tye:THEYE_A1086 hypothetical protein; PFAM: Uncharacterised protein family UPF0066; SPTR: Putative uncharacterized protein; IMG reference gene:2505285453; PFAM: Uncharacterised protein family UPF0066; TIGRFAM: putative methyltransferase, YaeB/AF_0241 family YP_004626929.1 COGs: COG1576 conserved hypothetical protein; InterPro IPR003742; KEGG: sub:SUB1867 rRNA large subunit methyltransferase; PFAM: protein of unknown function DUF163; SPTR: Ribosomal RNA large subunit methyltransferase H; IMG reference gene:2505285454; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH YP_004626930.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dal:Dalk_2812 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; IMG reference gene:2505285455; PFAM: Glycosyl transferase family 2 YP_004626931.1 InterPro IPR009875; KEGG: hoh:Hoch_6704 response regulator receiver modulated PilZ sensor protein; PFAM: type IV pilus assembly PilZ; SPTR: Response regulator receiver modulated PilZ sensor protein; IMG reference gene:2505285456; PFAM: PilZ domain YP_004626932.1 COGs: COG0143 Methionyl-tRNA synthetase; InterProIPR014758:IPR015413:IPR002547:IPR002304:IPR 004495; KEGG: dal:Dalk_0026 methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein; SPTR: Methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; IMG reference gene:2505285457; PFAM: Anticodon-binding domain; tRNA synthetases class I (M); Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase YP_004626933.1 COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: hor:Hore_20350 PSP1 domain protein; PFAM: PSP1 domain protein; SPTR: PSP1 domain protein; IMG reference gene:2505285458; PFAM: PSP1 C-terminal conserved region YP_004626934.1 KEGG: vvi:100244477 hypothetical protein LOC100244477; SPTR: Whole genome shotgun sequence of line PN40024, scaffold_9.assembly12x; IMG reference gene:2505285459 YP_004626935.1 COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: tye:THEYE_A0943 N-(5'phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; IMG reference gene:2505285460; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase YP_004626936.1 COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482:IPR007831:IPR003593; KEGG: dat:HRM2_30260 GspE3; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; SPTR: GspE3; IMG reference gene:2505285461; PFAM: Type II/IV secretion system protein YP_004626937.1 COGs: COG2165 Type II secretory pathway pseudopilin PulG; InterPro IPR000983:IPR012902:IPR013545:IPR010054; KEGG: tbd:Tbd_1293 tyep II secretion system protein G; PFAM: type II secretion system protein G; SPTR: Tyep II secretion system protein G; TIGRFAM: general secretion pathway protein G; IMG reference gene:2505285462; PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain YP_004626938.1 COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR003004:IPR018076; KEGG: alv:Alvin_3015 type II secretion system F domain protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system F domain protein; IMG reference gene:2505285463; PFAM: Bacterial type II secretion system protein F domain YP_004626939.1 InterPro IPR007813; KEGG: sfu:Sfum_3660 fimbrial assembly family protein; PFAM: Fimbrial assembly family protein; SPTR: Fimbrial assembly family protein; IMG reference gene:2505285464; PFAM: Fimbrial assembly protein (PilN) YP_004626940.1 KEGG: sai:Saci_1035 ABC transporter; SPTR: ABC transporter; IMG reference gene:2505285465 YP_004626941.1 KEGG: nwa:Nwat_2351 hypothetical protein; SPTR: High molecular weight basic nuclear protein; IMG reference gene:2505285466 YP_004626942.1 InterPro IPR001120:IPR012902; KEGG: sun:SUN_0022 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285467; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004626943.1 InterPro IPR001120:IPR010916:IPR012902; KEGG: sfu:Sfum_3664 general secretion pathway protein H; SPTR: General secretion pathway protein H; IMG reference gene:2505285468; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004626944.1 KEGG: sfu:Sfum_3661 type II secretory pathway component PulK-like; SPTR: Similar to general secretory pathway protein K; IMG reference gene:2505285469; PFAM: General secretion pathway protein K YP_004626945.1 COGs: COG1450 Type II secretory pathway component PulD; InterProIPR001775:IPR001814:IPR005644:IPR004846:IPR 013356; KEGG: ara:Arad_9991 general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; SPTR: General secretion pathway protein D; TIGRFAM: general secretion pathway protein D; IMG reference gene:2505285470; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D YP_004626946.1 InterPro IPR012902; KEGG: hth:HTH_0660 hypothetical protein; SPTR: 5-oxoprolinase; IMG reference gene:2505285471; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004626947.1 KEGG: geo:Geob_3815 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285472 YP_004626948.1 COGs: COG0172 Seryl-tRNA synthetase; InterProIPR018156:IPR002317:IPR015866:IPR002314:IPR 006195; KEGG: gme:Gmet_3528 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; PRIAM: Serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; IMG reference gene:2505285473; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase YP_004626949.1 COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004837:IPR004481; KEGG: tra:Trad_2429 Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; SPTR: Na+/Ca+ antiporter, CaCA family; TIGRFAM: Na+/Ca+ antiporter, CaCA family; IMG reference gene:2505285474; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein YP_004626950.1 COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: dak:DaAHT2_1973 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; IMG reference gene:2505285475; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_004626951.1 COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR018768; KEGG: dak:DaAHT2_1161 protein of unknown function DUF2344; PFAM: Protein of unknown function DUF2344; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Fe-S oxidoreductase; IMG reference gene:2505285476; PFAM: Uncharacterized protein conserved in bacteria (DUF2344); Radical SAM superfamily; TIGRFAM: radical SAM family uncharacterized protein; radical SAM-linked protein YP_004626952.1 COGs: COG1210 UDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005771; KEGG: dak:DaAHT2_0367 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: UTP--glucose-1-phosphate uridylyltransferase; SPTR: UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; IMG reference gene:2505285477; PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase YP_004626953.1 KEGG: dol:Dole_3051 response regulator receiver protein; SPTR: Response regulator receiver protein; IMG reference gene:2505285478 YP_004626954.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482:IPR006321; KEGG: dal:Dalk_3301 twitching motility protein; PFAM: type II secretion system protein E; SPTR: Twitching motility protein; TIGRFAM: twitching motility protein; IMG reference gene:2505285479; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_004626955.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR003593:IPR001482:IPR006321; KEGG: dak:DaAHT2_1068 twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: Twitching motility protein; TIGRFAM: twitching motility protein; IMG reference gene:2505285480; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_004626956.1 COGs: COG2884 ATPase involved in cell division; InterPro IPR003593:IPR003439:IPR017871:IPR005286; KEGG: ppd:Ppro_2412 cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; IMG reference gene:2505285481; PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE YP_004626957.1 COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: dak:DaAHT2_1197 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; IMG reference gene:2505285482; PFAM: Predicted permease YP_004626958.1 COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: glo:Glov_1921 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; IMG reference gene:2505285483; PFAM: Peptidase family M23 YP_004626959.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: sfu:Sfum_3063 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; PRIAM: C-terminal processing peptidase; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; IMG reference gene:2505285484; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004626960.1 COGs: COG2861 conserved hypothetical protein; InterPro IPR006837; KEGG: dol:Dole_2454 protein of unknown function DUF610 YibQ; PFAM: protein of unknown function DUF610 YibQ; SPTR: Putative uncharacterized protein; IMG reference gene:2505285485; PFAM: Divergent polysaccharide deacetylase YP_004626961.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839:IPR005861:IPR001917; KEGG: dak:DaAHT2_2672 histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; SPTR: Histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; IMG reference gene:2505285486; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase YP_004626962.1 COGs: COG0283 Cytidylate kinase; InterPro IPR000623:IPR011994:IPR003136; KEGG: tte:TTE1350 cytidylate kinase; PFAM: cytidylate kinase region; shikimate kinase; SPTR: Cytidylate kinase; TIGRFAM: cytidylate kinase; IMG reference gene:2505285487; PFAM: Cytidylate kinase; Adenylate kinase; TIGRFAM: cytidylate kinase YP_004626963.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: aae:aq_1899 dolichol-phosphate mannosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Dolichol-phosphate mannosyltransferase; IMG reference gene:2505285488; PFAM: Glycosyl transferase family 2 YP_004626964.1 InterPro IPR005242; KEGG: min:Minf_2171 hypothetical protein; SPTR: Uncharacterized conserved membrane protein; IMG reference gene:2505285489; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein YP_004626965.1 InterPro IPR000620; KEGG: dat:HRM2_13600 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative uncharacterized protein; IMG reference gene:2505285490; PFAM: EamA-like transporter family YP_004626966.1 COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376:IPR005793:IPR005794:IPR001555; KEGG: gme:Gmet_3339 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; IMG reference gene:2505285491; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase YP_004626967.1 COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027:IPR000103:IPR004099; KEGG: adg:Adeg_1429 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2505285492; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_004626968.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439:IPR017871:IPR004602; KEGG: alv:Alvin_0546 excinuclease ABC, A subunit; PFAM: ABC transporter related; SPTR: Excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; IMG reference gene:2505285493; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_004626969.1 COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: rca:Rcas_1244 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; IMG reference gene:2505285494; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase YP_004626970.1 COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; InterPro IPR000515; KEGG: ddf:DEFDS_1579 spermidine/putrescine ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type spermidine/putrescine transport system, permease component II; IMG reference gene:2505285495; PFAM: Binding-protein-dependent transport system inner membrane component YP_004626971.1 COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; InterPro IPR000515; KEGG: ant:Arnit_1316 binding-protein-dependent transporter inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type spermidine/putrescine transport system, permease component I; IMG reference gene:2505285496; PFAM: Binding-protein-dependent transport system inner membrane component YP_004626972.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593:IPR003439:IPR013611:IPR017871; KEGG: ddf:DEFDS_1581 spermidine/putrescine ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; SPTR: Spermidine/putrescine ABC transporter, ATP-binding protein (PotA); IMG reference gene:2505285497; PFAM: ABC transporter; TOBE domain YP_004626973.1 COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; InterPro IPR001188:IPR006059; KEGG: ddf:DEFDS_1582 spermidine/putrescine ABC transporter substrate-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: Spermidine/putrescine-binding periplasmic protein; IMG reference gene:2505285498; PFAM: Bacterial extracellular solute-binding protein YP_004626974.1 COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: pis:Pisl_0002 hypothetical protein; PFAM: protein of unknown function DUF62; SPTR: Putative uncharacterized protein; IMG reference gene:2505285499; PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase YP_004626975.1 COGs: COG4123 O-methyltransferase; InterPro IPR007848:IPR002052; KEGG: sat:SYN_01006 methyltransferase; PFAM: methyltransferase small; SPTR: Methyltransferase; IMG reference gene:2505285500; PFAM: Methyltransferase small domain YP_004626976.1 InterPro IPR007922; KEGG: dps:DP0932 hypothetical protein; PFAM: protein of unknown function DUF721; SPTR: Putative uncharacterized protein; IMG reference gene:2505285501; PFAM: Protein of unknown function (DUF721) YP_004626977.1 COGs: COG1109 Phosphomannomutase; InterProIPR005841:IPR005844:IPR005845:IPR005846:IPR 005843:IPR016066; KEGG: afw:Anae109_0166 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: Phosphomannomutase; IMG reference gene:2505285502; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_004626978.1 COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089:IPR004090:IPR000727; KEGG: ami:Amir_1755 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Methyl-accepting chemotaxis sensory transducer; IMG reference gene:2505285503; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_004626979.1 KEGG: dak:DaAHT2_0802 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285504 YP_004626980.1 COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR001667:IPR003156:IPR004610; KEGG: gsu:GSU2614 single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; IMG reference gene:2505285505; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ YP_004626981.1 InterPro IPR000119; KEGG: dde:Dde_0517 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: Histone-like DNA-binding protein; IMG reference gene:2505285506; PFAM: Bacterial DNA-binding protein YP_004626982.1 COGs: COG0148 Enolase; InterPro IPR000941:IPR020811:IPR020810:IPR020809; KEGG: tte:TTE1759 phosphopyruvate hydratase; PFAM: Enolase-like; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: enolase; IMG reference gene:2505285507; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase YP_004626983.1 COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: dak:DaAHT2_0562 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: Isochorismatase hydrolase; IMG reference gene:2505285508; PFAM: Isochorismatase family YP_004626984.1 COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains; InterPro IPR005144:IPR003796; KEGG: gem:GM21_1225 transcriptional regulator NrdR; PFAM: ATP-cone domain protein; SPTR: Transcriptional repressor nrdR; IMG reference gene:2505285509; PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR YP_004626985.1 COGs: COG1773 Rubredoxin; InterPro IPR001052:IPR004039:IPR018527; KEGG: dak:DaAHT2_1019 rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; IMG reference gene:2505285510; PFAM: Rubredoxin YP_004626986.1 KEGG: dak:DaAHT2_2128 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285511 YP_004626987.1 COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: sul:SYO3AOP1_1339 transposase IS116/IS110/IS902 family protein; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase and inactivated derivative; IMG reference gene:2505285512; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004626988.1 IMG reference gene:2505285513 YP_004626989.1 COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR000759:IPR001041:IPR013027:IPR006963:IPR 006656:IPR006657:IPR018247:IPR017900:IPR006655:IPR017896:I PR006478; KEGG: dak:DaAHT2_0823 formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; SPTR: Formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; manually curated; selenocysteine-containing protein; IMG reference gene:2505285514; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; 4Fe-4S binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: formate dehydrogenase, alpha subunit, archaeal-type YP_004626990.1 COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR003704:IPR005673; KEGG: dge:Dgeo_0649 periplasmic phosphate binding protein; PFAM: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; SPTR: ABC-type phosphate transport system, periplasmic component, PstS; TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; IMG reference gene:2505285515; PFAM: Bacterial extracellular solute-binding protein; CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; TIGRFAM: phosphate ABC transporter, phosphate-binding protein YP_004626991.1 COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR000489; KEGG: dak:DaAHT2_1991 dihydropteroate synthase DhpS; PFAM: dihydropteroate synthase DHPS; SPTR: Dihydropteroate synthase DHPS; IMG reference gene:2505285516; PFAM: Pterin binding enzyme YP_004626992.1 InterPro IPR010235; KEGG: slp:Slip_1892 nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; SPTR: Nucleotidyltransferase substrate binding protein, HI0074 family; IMG reference gene:2505285517; PFAM: Nucleotidyltransferase substrate binding protein like; TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family YP_004626993.1 InterPro IPR002934; KEGG: aae:aq_507 hypothetical protein; PFAM: DNA polymerase beta domain protein region; SPTR: Putative uncharacterized protein; IMG reference gene:2505285518; PFAM: Nucleotidyltransferase domain YP_004626994.1 COGs: COG1456 CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein); InterPro IPR007202:IPR016041:IPR016218; KEGG: dak:DaAHT2_0824 CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; Fe-S cluster domain protein; SPTR: CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; IMG reference gene:2505285519; PFAM: Putative Fe-S cluster; CO dehydrogenase/acetyl-CoA synthase delta subunit YP_004626995.1 COGs: COG1614 CO dehydrogenase/acetyl-CoA synthase beta subunit; InterPro IPR004461; KEGG: dak:DaAHT2_0825 CO dehydrogenase/acetyl-CoA synthase complex, beta subunit; PFAM: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; PRIAM: CO-methylating acetyl-CoA synthase; SPTR: CO dehydrogenase/acetyl-CoA synthase complex, beta subunit; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase complex, beta subunit; IMG reference gene:2505285520; PFAM: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; TIGRFAM: CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit YP_004626996.1 COGs: COG2069 CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein); InterPro IPR019734:IPR003171:IPR016041:IPR013026; KEGG: dak:DaAHT2_0826 CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; methylenetetrahydrofolate reductase; SPTR: CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; IMG reference gene:2505285521; PFAM: Methylenetetrahydrofolate reductase; CO dehydrogenase/acetyl-CoA synthase delta subunit; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase, delta subunit YP_004626997.1 KEGG: pth:PTH_1005 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285522; PFAM: Methylene-tetrahydrofolate reductase C terminal YP_004626998.1 COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit; InterPro IPR003813; KEGG: adg:Adeg_0343 methyl-viologen-reducing hydrogenase delta subunit; PFAM: methyl-viologen-reducing hydrogenase delta subunit; SPTR: Methyl-viologen-reducing hydrogenase delta subunit; IMG reference gene:2505285523; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit YP_004626999.1 COGs: COG1150 Heterodisulfide reductase subunit C; InterPro IPR017900:IPR017896; KEGG: dak:DaAHT2_1634 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding; IMG reference gene:2505285524 YP_004627000.1 COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit; InterPro IPR003813; KEGG: dak:DaAHT2_0821 methyl-viologen-reducing hydrogenase delta subunit; PFAM: methyl-viologen-reducing hydrogenase delta subunit; SPTR: Methyl-viologen-reducing hydrogenase delta subunit; manually curated; selenocysteine-containing protein; IMG reference gene:2505285525; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit YP_004627001.1 COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterProIPR013027:IPR006076:IPR003953:IPR017900:IPR 017896; KEGG: dak:DaAHT2_2650 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; SPTR: Fumarate reductase/succinate dehydrogenase flavoprotein domain protein; manually curated; selenocysteine-containing protein; IMG reference gene:2505285526; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004627002.1 COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterPro IPR004137:IPR010047; KEGG: adg:Adeg_0335 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; PRIAM: Carbon-monoxide dehydrogenase (acceptor); SPTR: Carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; IMG reference gene:2505285527; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit YP_004627003.1 COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR000672:IPR020630:IPR020631:IPR020867; KEGG: dak:DaAHT2_0828 methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methenyltetrahydrofolate cyclohydrolase; SPTR: Methylenetetrahydrofolate dehydrogenase (NADP(+)); IMG reference gene:2505285528; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004627004.1 COGs: COG2759 Formyltetrahydrofolate synthetase; InterPro IPR000559:IPR020628; KEGG: dak:DaAHT2_0837 formate--tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS; PRIAM: Formate--tetrahydrofolate ligase; SPTR: Formate--tetrahydrofolate ligase; IMG reference gene:2505285529; PFAM: Formate--tetrahydrofolate ligase YP_004627005.1 InterPro IPR009875; KEGG: sal:Sala_2190 XRE family transcriptional regulator; PFAM: type IV pilus assembly PilZ; SPTR: Putative uncharacterized protein; IMG reference gene:2505285530 YP_004627006.1 InterPro IPR017909:IPR006311; KEGG: dak:DaAHT2_0012 chain A, iron Centre cytochrome c protein; SPTR: Chain A, iron Centre cytochrome c protein; IMG reference gene:2505285531 YP_004627007.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sul:SYO3AOP1_1193 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; IMG reference gene:2505285532; PFAM: Methyltransferase domain YP_004627008.1 COGs: COG0174 Glutamine synthetase; InterPro IPR008147:IPR008146:IPR004809; KEGG: dal:Dalk_5100 glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; SPTR: Glutamine synthetase; TIGRFAM: glutamine synthetase, type I; IMG reference gene:2505285533; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I YP_004627009.1 COGs: COG2844 UTP:GlnB (protein PII) uridylyltransferase; InterProIPR003607:IPR002934:IPR013546:IPR006674:IPR 002912:IPR010043; KEGG: dps:DP0929 [protein-PII] uridylyltransferase; PFAM: GlnD PII-uridylyltransferase; DNA polymerase beta domain protein region; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; PRIAM: [Protein-PII] uridylyltransferase; SMART: metal-dependent phosphohydrolase HD region; SPTR: Probable [Protein-PII] uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; IMG reference gene:2505285534; PFAM: GlnD PII-uridylyltransferase; HD domain; Nucleotidyltransferase domain; TIGRFAM: [Protein-PII] uridylyltransferase YP_004627010.1 COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR002332:IPR017918; KEGG: pmx:PERMA_1585 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: Nitrogen regulatory protein P-II; IMG reference gene:2505285535; PFAM: Nitrogen regulatory protein P-II YP_004627011.1 InterPro IPR005358; KEGG: dak:DaAHT2_0703 protein of unknown function UPF0153; PFAM: protein of unknown function UPF0153; SPTR: Putative uncharacterized protein; IMG reference gene:2505285536; PFAM: Uncharacterised protein family (UPF0153) YP_004627012.1 COGs: COG0603 PP-loop superfamily ATPase; InterPro IPR018317:IPR004479; KEGG: ddf:DEFDS_0939 ExsB family transcriptional regulator; PFAM: Queuosine synthesis-like; SPTR: Transcriptional regulator, ExsB family; TIGRFAM: exsB protein; IMG reference gene:2505285537; PFAM: ExsB; TIGRFAM: queuosine biosynthesis protein QueC YP_004627013.1 COGs: COG0499 S-adenosylhomocysteine hydrolase; InterPro IPR000043:IPR015878:IPR020082; KEGG: tye:THEYE_A0111 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; S-adenosyl-L-homocysteine hydrolase; PRIAM: Adenosylhomocysteinase; SPTR: Adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; IMG reference gene:2505285538; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase YP_004627014.1 COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: sfu:Sfum_0367 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; IMG reference gene:2505285539; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase YP_004627015.1 COGs: COG2248 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR014426; KEGG: afu:AF0504 hypothetical protein; SPTR: UPF0282 protein AF_0504; IMG reference gene:2505285540; PFAM: Metallo-beta-lactamase superfamily YP_004627016.1 KEGG: sfu:Sfum_1584 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285543 YP_004627017.1 COGs: COG0533 Metal-dependent protease with possible chaperone activity; InterPro IPR017861:IPR000905; KEGG: hor:Hore_01980 putative metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Probable O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; IMG reference gene:2505285544; PFAM: Glycoprotease family; TIGRFAM: putative glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family YP_004627018.1 COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR020598:IPR001737:IPR011530:IPR020596; KEGG: dak:DaAHT2_0616 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase-like; SPTR: Dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; IMG reference gene:2505285545; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase YP_004627019.1 COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; InterPro IPR000991:IPR017926; KEGG: pmx:PERMA_0892 glutamine amidotransferase class-I; PFAM: glutamine amidotransferase class-I; SPTR: Glutamine amidotransferase class-I; IMG reference gene:2505285546; PFAM: Glutamine amidotransferase class-I YP_004627020.1 COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218; KEGG: aeh:Mlg_1445 DAHP synthetase I/KdsA; PFAM: DAHP synthetase I/KDSA; SPTR: DAHP synthetase I/KDSA; IMG reference gene:2505285547; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_004627021.1 COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: svo:SVI_1135 MarC family integral membrane protein; PFAM: multiple antibiotic resistance (MarC)-related protein; SPTR: MarC family integral membrane protein; IMG reference gene:2505285548; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family YP_004627022.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594:IPR007901; KEGG: pmo:Pmob_0383 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; SPTR: UBA/THIF-type NAD/FAD binding protein; IMG reference gene:2505285549; PFAM: MoeZ/MoeB domain; ThiF family YP_004627023.1 InterPro IPR003749:IPR010038; KEGG: pmo:Pmob_0384 MoaD family protein; PFAM: thiamineS protein; SPTR: MoaD family protein; TIGRFAM: MoaD family protein; IMG reference gene:2505285550; PFAM: ThiS family; TIGRFAM: MoaD family protein, archaeal YP_004627024.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR001176:IPR004839:IPR004838; KEGG: dak:DaAHT2_0099 aminotransferase class I and II; PFAM: aminotransferase class I and II; SPTR: Aminotransferase class I and II; IMG reference gene:2505285551; PFAM: Aminotransferase class I and II YP_004627025.1 COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: tye:THEYE_A0024 phenylacetate-coenzyme A ligase; PFAM: AMP-dependent synthetase and ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: Phenylacetate-coenzyme A ligase; IMG reference gene:2505285552; PFAM: AMP-binding enzyme YP_004627026.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269:IPR018517; KEGG: aae:aq_1598 hypothetical protein; PFAM: dihydrouridine synthase DuS; SPTR: Probable tRNA-dihydrouridine synthase; IMG reference gene:2505285553; PFAM: Dihydrouridine synthase (Dus) YP_004627027.1 COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: slt:Slit_2006 serine/threonine protein kinase; PFAM: Metal-dependent hydrolase HDOD; SPTR: Serine/threonine protein kinase; IMG reference gene:2505285554; PFAM: HDOD domain YP_004627028.1 COGs: COG1409 phosphohydrolase; InterPro IPR004843; KEGG: aae:aq_684 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; IMG reference gene:2505285555; PFAM: Calcineurin-like phosphoesterase YP_004627029.1 InterPro IPR011031; KEGG: ant:Arnit_1867 hydroxylamine oxidase; SPTR: Hydroxylamine oxidase; IMG reference gene:2505285556 YP_004627030.1 COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cytochrome c subunit; InterPro IPR005126:IPR011031; KEGG: pmx:PERMA_1457 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; PFAM: NapC/NirT cytochrome c domain protein; SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; IMG reference gene:2505285557; PFAM: NapC/NirT cytochrome c family, N-terminal region; TIGRFAM: cytochrome c nitrate reductase, small subunit YP_004627031.1 COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR004358:IPR 005467:IPR009056; KEGG: dba:Dbac_2092 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: Histidine kinase; IMG reference gene:2505285558; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Protein of unknown function (DUF3365) YP_004627032.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dba:Dbac_2095 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; IMG reference gene:2505285559; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004627033.1 COGs: COG0348 Polyferredoxin; InterPro IPR017900:IPR000463:IPR017896; KEGG: ddf:DEFDS_1823 periplasmic nitrate reductase NapH; SPTR: Periplasmic nitrate reductase NapH; IMG reference gene:2505285560; TIGRFAM: ferredoxin-type protein, NapH/MauN family YP_004627034.1 InterPro IPR017900:IPR017896; KEGG: dap:Dacet_0088 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; manually curated; IMG reference gene:2505285561; TIGRFAM: ferredoxin-type protein NapF; MauM/NapG family ferredoxin-type protein YP_004627035.1 InterPro IPR005623; KEGG: ctt:CtCNB1_2019 NapD family protein; PFAM: NapD family protein; SPTR: Periplasmic nitrate reductase NapD; IMG reference gene:2505285562; PFAM: NapD protein YP_004627036.1 COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterProIPR006963:IPR006656:IPR006657:IPR017909:IPR 006311; KEGG: ddf:DEFDS_1820 periplasmic nitrate reductase NapA; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; SPTR: Periplasmic nitrate reductase NapA; IMG reference gene:2505285563; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004627037.1 InterPro IPR011031; KEGG: ddf:DEFDS_1819 multiheme C-type cytochrome; SPTR: Multiheme c-type cytochrome; IMG reference gene:2505285564; PFAM: Class III cytochrome C family YP_004627038.1 COGs: COG0370 Fe2+ transport system protein B; InterProIPR006073:IPR002917:IPR011619:IPR011642:IPR 011640:IPR005225:IPR003373; KEGG: pph:Ppha_2843 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein; SPTR: Ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; IMG reference gene:2505285565; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain YP_004627039.1 KEGG: nam:NAMH_1746 transporter gate domain protein; SPTR: Transporter gate domain protein; IMG reference gene:2505285566; PFAM: Nucleoside recognition YP_004627040.1 COGs: COG1568 methyltransferase; InterPro IPR002723; KEGG: apo:Arcpr_0370 protein of unknown function DUF43; PFAM: protein of unknown function DUF43; SPTR: Putative uncharacterized protein; IMG reference gene:2505285567; PFAM: Protein of unknown function DUF43 YP_004627041.1 COGs: COG0864 transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; InterPro IPR014864; KEGG: tpd:Teth39_2019 nickel responsive regulator; PFAM: NikR nickel binding; SPTR: Similar to nickel response regulator; IMG reference gene:2505285568; PFAM: Ribbon-helix-helix protein, copG family; NikR C terminal nickel binding domain; TIGRFAM: nickel-responsive transcriptional regulator NikR YP_004627042.1 KEGG: nam:NAMH_1390 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2505285569 YP_004627043.1 COGs: COG1462 Uncharacterized protein involved in formation of curli polymers; InterPro IPR005534; KEGG: nam:NAMH_1389 putative curli production assembly/transport component CsgG subfamily; PFAM: Curli production assembly/transport component CsgG; SPTR: Putative curli production assembly/transport component CsgG subfamily; IMG reference gene:2505285570; PFAM: Curli production assembly/transport component CsgG YP_004627044.1 COGs: COG1324 conserved hypothetical protein involved in tolerance to divalent cations; InterPro IPR004323; KEGG: dal:Dalk_3429 CutA1 divalent ion tolerance protein; PFAM: CutA1 divalent ion tolerance protein; SPTR: CutA1 divalent ion tolerance protein; IMG reference gene:2505285571; PFAM: CutA1 divalent ion tolerance protein YP_004627045.1 KEGG: dat:HRM2_46600 transposase for insertion sequences IS116, IS110 and IS902 (IS111A/IS1328/IS1533 family protein); SPTR: Transposase; manually curated; IMG reference gene:2505285572; PFAM: Transposase IS116/IS110/IS902 family; Transposase