; retrieve-seq -v -org Treponema_pallidum_SS14_uid58977 -all -type downstream -feattype CDS -from 0 -to -2 -format wc -nocomment -label id,ctg,reg_left,reg_right,orf_strand -o /software/CC/bio/opt/rsat/rsa-tools//public_html/data/genomes/Treponema_pallidum_SS14_uid58977/genome/Treponema_pallidum_SS14_uid58977_stop_codons.wc
; organism      	Treponema_pallidum_SS14_uid58977
; sequence type 	downstream
; feature type  	cds
; Output format 	wc
; Line width    	60
; relative coordinates
;        from    -2
;        to      0
;        size    3
; Queries       	1028
;
YP_001933009.1|NC_010741.1|1396|1398|D	\TAG\
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YP_001933011.1|NC_010741.1|3832|3834|D	\TAA\
YP_001933012.1|NC_010741.1|4262|4264|D	\TAG\
YP_001933013.1|NC_010741.1|6830|6832|D	\TAA\
YP_001933014.1|NC_010741.1|7965|7967|D	\TAA\
YP_001933015.1|NC_010741.1|8258|8260|D	\TAA\
YP_001933016.1|NC_010741.1|10360|10362|D	\TGA\
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YP_001933021.1|NC_010741.1|15775|15777|D	\TAG\
YP_001933022.1|NC_010741.1|18311|18313|D	\TAG\
YP_001933023.1|NC_010741.1|19346|19348|D	\TGA\
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YP_001933039.1|NC_010741.1|41074|41076|R	\TGA\
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YP_001933076.1|NC_010741.1|75466|75468|R	\TGA\
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YP_001933078.1|NC_010741.1|79013|79015|D	\TAG\
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YP_001933204.1|NC_010741.1|211328|211330|D	\TGA\
YP_001933205.1|NC_010741.1|211651|211653|D	\TGA\
YP_001933206.1|NC_010741.1|212205|212207|D	\TAA\
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YP_001933208.1|NC_010741.1|212816|212818|D	\TAG\
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YP_001933210.1|NC_010741.1|213736|213738|D	\TAG\
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YP_001933220.1|NC_010741.1|218944|218946|D	\TGA\
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YP_001933234.1|NC_010741.1|239415|239417|D	\TAA\
YP_001933235.1|NC_010741.1|241393|241395|D	\TAG\
YP_001933236.1|NC_010741.1|242144|242146|D	\TGA\
YP_001933237.1|NC_010741.1|242360|242362|D	\TAG\
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YP_001933240.1|NC_010741.1|243670|243672|D	\TGA\
YP_001933241.1|NC_010741.1|244237|244239|D	\TGA\
YP_001933242.1|NC_010741.1|244784|244786|D	\TGA\
YP_001933243.1|NC_010741.1|245461|245463|D	\TAG\
YP_001933244.1|NC_010741.1|246005|246007|D	\TAG\
YP_001933245.1|NC_010741.1|246503|246505|D	\TAG\
YP_001933246.1|NC_010741.1|250302|250304|D	\TAA\
YP_001933247.1|NC_010741.1|254565|254567|D	\TGA\
YP_001933248.1|NC_010741.1|255042|255044|D	\TAG\
YP_001933249.1|NC_010741.1|255534|255536|D	\TAG\
YP_001933250.1|NC_010741.1|259013|259015|D	\TGA\
YP_001933251.1|NC_010741.1|260952|260954|D	\TAG\
YP_001933252.1|NC_010741.1|262076|262078|D	\TGA\
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YP_001933255.1|NC_010741.1|263956|263958|D	\TGA\
YP_001933256.1|NC_010741.1|264078|264080|D	\TGA\
YP_001933257.1|NC_010741.1|264427|264429|D	\TGA\
YP_001933258.1|NC_010741.1|266057|266059|D	\TGA\
YP_001933259.1|NC_010741.1|266461|266463|D	\TAG\
YP_001933260.1|NC_010741.1|268257|268259|D	\TGA\
YP_001933261.1|NC_010741.1|268579|268581|D	\TAG\
YP_001933262.1|NC_010741.1|269274|269276|D	\TAA\
YP_001933263.1|NC_010741.1|270441|270443|D	\TGA\
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YP_001933275.1|NC_010741.1|287211|287213|D	\TGA\
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YP_001933291.1|NC_010741.1|301437|301439|D	\TAA\
YP_001933292.1|NC_010741.1|301774|301776|D	\TGA\
YP_001933293.1|NC_010741.1|302364|302366|D	\TAA\
YP_001933294.1|NC_010741.1|303311|303313|D	\TGA\
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YP_001933296.1|NC_010741.1|305826|305828|D	\TAA\
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YP_001933298.1|NC_010741.1|307988|307990|D	\TAA\
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YP_001933301.1|NC_010741.1|310682|310684|D	\TAG\
YP_001933302.1|NC_010741.1|311403|311405|D	\TAA\
YP_001933303.1|NC_010741.1|312179|312181|D	\TAG\
YP_001933304.1|NC_010741.1|313343|313345|D	\TGA\
YP_001933305.1|NC_010741.1|313564|313566|D	\TGA\
YP_001933306.1|NC_010741.1|315099|315101|D	\TGA\
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YP_001933309.1|NC_010741.1|317150|317152|R	\TAA\
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YP_001933311.1|NC_010741.1|323883|323885|D	\TGA\
YP_001933312.1|NC_010741.1|324662|324664|D	\TAG\
YP_001933313.1|NC_010741.1|325777|325779|D	\TAG\
YP_001933314.1|NC_010741.1|326717|326719|D	\TAA\
YP_001933315.1|NC_010741.1|327601|327603|D	\TAA\
YP_001933316.1|NC_010741.1|327953|327955|D	\TGA\
YP_001933317.1|NC_010741.1|327934|327936|R	\TGA\
YP_001933318.1|NC_010741.1|329072|329074|D	\TAG\
YP_001933319.1|NC_010741.1|331451|331453|D	\TAG\
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YP_001933322.1|NC_010741.1|333573|333575|R	\TAG\
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YP_001933324.1|NC_010741.1|337062|337064|D	\TAA\
YP_001933325.1|NC_010741.1|337227|337229|D	\TAG\
YP_001933326.1|NC_010741.1|338904|338906|D	\TGA\
YP_001933327.1|NC_010741.1|340016|340018|D	\TGA\
YP_001933328.1|NC_010741.1|340963|340965|D	\TAA\
YP_001933329.1|NC_010741.1|342524|342526|D	\TGA\
YP_001933330.1|NC_010741.1|345472|345474|D	\TGA\
YP_001933331.1|NC_010741.1|348015|348017|D	\TAG\
YP_001933332.1|NC_010741.1|348590|348592|D	\TGA\
YP_001933333.1|NC_010741.1|351348|351350|D	\TAA\
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YP_001933335.1|NC_010741.1|353166|353168|R	\TAA\
YP_001933336.1|NC_010741.1|355192|355194|R	\TAG\
YP_001933337.1|NC_010741.1|356797|356799|D	\TAA\
YP_001933338.1|NC_010741.1|357527|357529|D	\TGA\
YP_001933339.1|NC_010741.1|358769|358771|D	\TAG\
YP_001933340.1|NC_010741.1|358768|358770|R	\TAG\
YP_001933341.1|NC_010741.1|360851|360853|D	\TAA\
YP_001933342.1|NC_010741.1|361689|361691|D	\TAG\
YP_001933343.1|NC_010741.1|362195|362197|D	\TGA\
YP_001933344.1|NC_010741.1|363202|363204|D	\TAG\
YP_001933345.1|NC_010741.1|363190|363192|R	\TAA\
YP_001933346.1|NC_010741.1|366124|366126|D	\TAA\
YP_001933347.1|NC_010741.1|366805|366807|D	\TAG\
YP_001933348.1|NC_010741.1|367632|367634|D	\TGA\
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YP_001933350.1|NC_010741.1|372303|372305|D	\TAG\
YP_001933351.1|NC_010741.1|373161|373163|D	\TGA\
YP_001933352.1|NC_010741.1|373960|373962|D	\TAG\
YP_001933353.1|NC_010741.1|373696|373698|R	\TAA\
YP_001933354.1|NC_010741.1|375075|375077|R	\TAG\
YP_001933355.1|NC_010741.1|377103|377105|D	\TGA\
YP_001933356.1|NC_010741.1|377990|377992|D	\TAG\
YP_001933357.1|NC_010741.1|378379|378381|D	\TAG\
YP_001933358.1|NC_010741.1|378378|378380|R	\TAG\
YP_001933359.1|NC_010741.1|379774|379776|D	\TAG\
YP_001933360.1|NC_010741.1|379743|379745|R	\TGA\
YP_001933361.1|NC_010741.1|380646|380648|D	\TAG\
YP_001933362.1|NC_010741.1|381488|381490|D	\TGA\
YP_001933363.1|NC_010741.1|381495|381497|R	\TGA\
YP_001933364.1|NC_010741.1|383087|383089|R	\TAA\
YP_001933365.1|NC_010741.1|384107|384109|D	\TAG\
YP_001933366.1|NC_010741.1|384106|384108|R	\TAG\
YP_001933367.1|NC_010741.1|385264|385266|D	\TGA\
YP_001933368.1|NC_010741.1|388194|388196|D	\TAG\
YP_001933369.1|NC_010741.1|389555|389557|D	\TAA\
YP_001933370.1|NC_010741.1|390041|390043|D	\TAA\
YP_001933371.1|NC_010741.1|390488|390490|D	\TGA\
YP_001933372.1|NC_010741.1|393617|393619|D	\TGA\
YP_001933373.1|NC_010741.1|393952|393954|D	\TGA\
YP_001933374.1|NC_010741.1|395499|395501|D	\TAG\
YP_001933375.1|NC_010741.1|395569|395571|R	\TAG\
YP_001933376.1|NC_010741.1|396832|396834|D	\TAG\
YP_001933377.1|NC_010741.1|397544|397546|D	\TAG\
YP_001933378.1|NC_010741.1|399037|399039|D	\TAA\
YP_001933379.1|NC_010741.1|401348|401350|D	\TAG\
YP_001933380.1|NC_010741.1|401715|401717|D	\TGA\
YP_001933381.1|NC_010741.1|402033|402035|R	\TGA\
YP_001933382.1|NC_010741.1|403130|403132|D	\TGA\
YP_001933383.1|NC_010741.1|403507|403509|D	\TGA\
YP_001933384.1|NC_010741.1|403584|403586|R	\TGA\
YP_001933385.1|NC_010741.1|406441|406443|R	\TAA\
YP_001933386.1|NC_010741.1|408399|408401|R	\TAG\
YP_001933387.1|NC_010741.1|409319|409321|D	\TAG\
YP_001933388.1|NC_010741.1|409796|409798|D	\TGA\
YP_001933389.1|NC_010741.1|410932|410934|D	\TAG\
YP_001933390.1|NC_010741.1|411319|411321|D	\TGA\
YP_001933391.1|NC_010741.1|412682|412684|D	\TGA\
YP_001933392.1|NC_010741.1|413833|413835|D	\TAG\
YP_001933393.1|NC_010741.1|414626|414628|D	\TAG\
YP_001933394.1|NC_010741.1|415883|415885|D	\TAA\
YP_001933395.1|NC_010741.1|417185|417187|D	\TGA\
YP_001933396.1|NC_010741.1|418102|418104|D	\TAG\
YP_001933397.1|NC_010741.1|418844|418846|D	\TGA\
YP_001933398.1|NC_010741.1|419749|419751|D	\TAG\
YP_001933399.1|NC_010741.1|421977|421979|D	\TAA\
YP_001933400.1|NC_010741.1|422863|422865|D	\TAG\
YP_001933401.1|NC_010741.1|423421|423423|D	\TAA\
YP_001933402.1|NC_010741.1|423895|423897|D	\TAG\
YP_001933403.1|NC_010741.1|424325|424327|D	\TAA\
YP_001933404.1|NC_010741.1|426145|426147|D	\TAG\
YP_001933405.1|NC_010741.1|427208|427210|D	\TAA\
YP_001933406.1|NC_010741.1|428185|428187|D	\TGA\
YP_001933407.1|NC_010741.1|429556|429558|D	\TGA\
YP_001933408.1|NC_010741.1|430037|430039|D	\TAA\
YP_001933409.1|NC_010741.1|430036|430038|R	\TAA\
YP_001933410.1|NC_010741.1|430566|430568|R	\TGA\
YP_001933411.1|NC_010741.1|432010|432012|D	\TGA\
YP_001933412.1|NC_010741.1|432812|432814|D	\TAG\
YP_001933413.1|NC_010741.1|436145|436147|D	\TGA\
YP_001933414.1|NC_010741.1|436370|436372|D	\TAA\
YP_001933415.1|NC_010741.1|438386|438388|D	\TGA\
YP_001933416.1|NC_010741.1|439645|439647|D	\TGA\
YP_001933417.1|NC_010741.1|439723|439725|R	\TAG\
YP_001933418.1|NC_010741.1|440047|440049|R	\TAA\
YP_001933419.1|NC_010741.1|443401|443403|D	\TAG\
YP_001933420.1|NC_010741.1|443915|443917|D	\TGA\
YP_001933421.1|NC_010741.1|443864|443866|R	\TAG\
YP_001933422.1|NC_010741.1|445215|445217|R	\TGA\
YP_001933423.1|NC_010741.1|448112|448114|D	\TGA\
YP_001933424.1|NC_010741.1|448672|448674|D	\TGA\
YP_001933425.1|NC_010741.1|448880|448882|D	\TGA\
YP_001933426.1|NC_010741.1|451065|451067|D	\TGA\
YP_001933427.1|NC_010741.1|452074|452076|D	\TAG\
YP_001933428.1|NC_010741.1|452905|452907|D	\TAG\
YP_001933429.1|NC_010741.1|453806|453808|D	\TGA\
YP_001933430.1|NC_010741.1|454044|454046|D	\TAG\
YP_001933431.1|NC_010741.1|455955|455957|D	\TAG\
YP_001933432.1|NC_010741.1|457251|457253|D	\TAG\
YP_001933433.1|NC_010741.1|457883|457885|D	\TGA\
YP_001933434.1|NC_010741.1|459748|459750|D	\TAG\
YP_001933435.1|NC_010741.1|460207|460209|D	\TAG\
YP_001933436.1|NC_010741.1|461062|461064|D	\TGA\
YP_001933437.1|NC_010741.1|461656|461658|D	\TAG\
YP_001933438.1|NC_010741.1|463525|463527|D	\TGA\
YP_001933439.1|NC_010741.1|463624|463626|R	\TAG\
YP_001933440.1|NC_010741.1|464225|464227|R	\TAA\
YP_001933441.1|NC_010741.1|465273|465275|R	\TAA\
YP_001933442.1|NC_010741.1|466640|466642|D	\TAG\
YP_001933443.1|NC_010741.1|467239|467241|D	\TAG\
YP_001933444.1|NC_010741.1|468480|468482|D	\TGA\
YP_001933445.1|NC_010741.1|469394|469396|D	\TGA\
YP_001933446.1|NC_010741.1|471108|471110|D	\TGA\
YP_001933447.1|NC_010741.1|471904|471906|D	\TAG\
YP_001933448.1|NC_010741.1|472938|472940|D	\TAG\
YP_001933449.1|NC_010741.1|473703|473705|D	\TGA\
YP_001933450.1|NC_010741.1|474959|474961|D	\TGA\
YP_001933451.1|NC_010741.1|476080|476082|D	\TAA\
YP_001933452.1|NC_010741.1|477220|477222|D	\TGA\
YP_001933453.1|NC_010741.1|477814|477816|D	\TGA\
YP_001933454.1|NC_010741.1|480002|480004|D	\TAA\
YP_001933455.1|NC_010741.1|479993|479995|R	\TGA\
YP_001933456.1|NC_010741.1|483727|483729|D	\TAG\
YP_001933457.1|NC_010741.1|484577|484579|D	\TAA\
YP_001933458.1|NC_010741.1|484929|484931|R	\TAG\
YP_001933459.1|NC_010741.1|485615|485617|R	\TGA\
YP_001933460.1|NC_010741.1|486676|486678|R	\TAA\
YP_001933461.1|NC_010741.1|489839|489841|D	\TAA\
YP_001933462.1|NC_010741.1|490508|490510|D	\TAA\
YP_001933463.1|NC_010741.1|491322|491324|D	\TAG\
YP_001933464.1|NC_010741.1|492072|492074|D	\TAG\
YP_001933465.1|NC_010741.1|492432|492434|D	\TAG\
YP_001933466.1|NC_010741.1|493479|493481|D	\TGA\
YP_001933467.1|NC_010741.1|493816|493818|D	\TAG\
YP_001933468.1|NC_010741.1|493877|493879|R	\TAA\
YP_001933469.1|NC_010741.1|494626|494628|R	\TGA\
YP_001933470.1|NC_010741.1|495431|495433|R	\TAA\
YP_001933471.1|NC_010741.1|496837|496839|D	\TGA\
YP_001933472.1|NC_010741.1|496809|496811|R	\TAG\
YP_001933473.1|NC_010741.1|498754|498756|R	\TAA\
YP_001933474.1|NC_010741.1|501094|501096|D	\TAG\
YP_001933475.1|NC_010741.1|501109|501111|R	\TAA\
YP_001933476.1|NC_010741.1|503259|503261|R	\TAG\
YP_001933477.1|NC_010741.1|503968|503970|R	\TAA\
YP_001933478.1|NC_010741.1|504846|504848|R	\TAG\
YP_001933479.1|NC_010741.1|506517|506519|R	\TAG\
YP_001933480.1|NC_010741.1|507930|507932|R	\TAG\
YP_001933481.1|NC_010741.1|508716|508718|R	\TAG\
YP_001933482.1|NC_010741.1|510336|510338|R	\TAG\
YP_001933483.1|NC_010741.1|511608|511610|D	\TAA\
YP_001933484.1|NC_010741.1|513073|513075|D	\TGA\
YP_001933485.1|NC_010741.1|513888|513890|D	\TAG\
YP_001933486.1|NC_010741.1|513956|513958|R	\TGA\
YP_001933487.1|NC_010741.1|515067|515069|R	\TAG\
YP_001933488.1|NC_010741.1|516976|516978|R	\TAA\
YP_001933489.1|NC_010741.1|518817|518819|R	\TGA\
YP_001933490.1|NC_010741.1|520501|520503|R	\TGA\
YP_001933491.1|NC_010741.1|524841|524843|D	\TAG\
YP_001933492.1|NC_010741.1|526257|526259|D	\TGA\
YP_001933493.1|NC_010741.1|526442|526444|D	\TAG\
YP_001933494.1|NC_010741.1|527483|527485|D	\TAA\
YP_001933495.1|NC_010741.1|529324|529326|D	\TGA\
YP_001933496.1|NC_010741.1|531156|531158|D	\TAG\
YP_001933497.1|NC_010741.1|531987|531989|D	\TAG\
YP_001933498.1|NC_010741.1|533306|533308|D	\TAG\
YP_001933499.1|NC_010741.1|534353|534355|D	\TGA\
YP_001933500.1|NC_010741.1|535221|535223|D	\TGA\
YP_001933501.1|NC_010741.1|535724|535726|D	\TAG\
YP_001933502.1|NC_010741.1|537599|537601|D	\TGA\
YP_001933503.1|NC_010741.1|538897|538899|D	\TAA\
YP_001933504.1|NC_010741.1|539819|539821|D	\TAG\
YP_001933505.1|NC_010741.1|540361|540363|D	\TAG\
YP_001933506.1|NC_010741.1|540483|540485|D	\TAG\
YP_001933507.1|NC_010741.1|540494|540496|R	\TAG\
YP_001933508.1|NC_010741.1|543889|543891|D	\TGA\
YP_001933509.1|NC_010741.1|544493|544495|D	\TAA\
YP_001933510.1|NC_010741.1|545727|545729|D	\TGA\
YP_001933511.1|NC_010741.1|546390|546392|D	\TAG\
YP_001933512.1|NC_010741.1|546573|546575|R	\TAA\
YP_001933513.1|NC_010741.1|549057|549059|D	\TGA\
YP_001933514.1|NC_010741.1|550301|550303|D	\TGA\
YP_001933515.1|NC_010741.1|551775|551777|D	\TAA\
YP_001933516.1|NC_010741.1|554771|554773|D	\TGA\
YP_001933517.1|NC_010741.1|557743|557745|D	\TAG\
YP_001933518.1|NC_010741.1|557759|557761|R	\TAA\
YP_001933519.1|NC_010741.1|559336|559338|R	\TGA\
YP_001933520.1|NC_010741.1|559908|559910|R	\TAG\
YP_001933521.1|NC_010741.1|560597|560599|R	\TGA\
YP_001933522.1|NC_010741.1|563168|563170|R	\TGA\
YP_001933523.1|NC_010741.1|564450|564452|R	\TAG\
YP_001933524.1|NC_010741.1|564926|564928|R	\TGA\
YP_001933525.1|NC_010741.1|566084|566086|R	\TGA\
YP_001933526.1|NC_010741.1|569426|569428|D	\TAG\
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YP_001933975.1|NC_010741.1|1065487|1065489|D	\TAA\
YP_001933976.1|NC_010741.1|1066710|1066712|D	\TAA\
YP_001933977.1|NC_010741.1|1067352|1067354|D	\TAA\
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YP_001933983.1|NC_010741.1|1074012|1074014|D	\TAG\
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YP_001934033.1|NC_010741.1|1136255|1136257|R	\TAG\
YP_001934034.1|NC_010741.1|1137585|1137587|D	\TAA\
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YP_001934036.1|NC_010741.1|1138665|1138667|R	\TAA\

; Host name	nic62
; Job started	2011_11_21.185441
; Job done	2011_11_21.185442
; Seconds	0.25