-- dump date 20111121_015444 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 455434000001 SEQ_END SEQ_END NC_010741.1 1139457 1139457 DR NC_010741.1; contig end 1139457..1139457 Treponema pallidum subsp. pallidum SS14 YP_001933009.1 CDS dnaA NC_010741.1 4 1398 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 4..1398 Treponema pallidum subsp. pallidum SS14 6333299 YP_001933010.1 CDS dnaN NC_010741.1 1641 2756 D DNA-directed DNA polymerase beta subunit 1641..2756 Treponema pallidum subsp. pallidum SS14 6333120 YP_001933011.1 CDS recF NC_010741.1 2623 3834 D recombination protein RecF 2623..3834 Treponema pallidum subsp. pallidum SS14 6333754 YP_001933012.1 CDS TPASS_0004 NC_010741.1 3827 4264 D hypothetical protein 3827..4264 Treponema pallidum subsp. pallidum SS14 6333119 YP_001933013.1 CDS gyrA NC_010741.1 4391 6832 D DNA gyrase subunit A; DNA topoisomerase (ATP-hydrolyzing) subunit A 4391..6832 Treponema pallidum subsp. pallidum SS14 6333755 YP_001933014.1 CDS TPASS_0006 NC_010741.1 7014 7967 D protein Tp75 7014..7967 Treponema pallidum subsp. pallidum SS14 6333118 YP_001933015.1 CDS TPASS_0008 NC_010741.1 7991 8260 D hypothetical protein 7991..8260 Treponema pallidum subsp. pallidum SS14 6333121 YP_001933016.1 CDS TPASS_0010 NC_010741.1 10237 10362 D hypothetical protein 10237..10362 Treponema pallidum subsp. pallidum SS14 6332864 YP_001933017.1 CDS tprB NC_010741.1 10396 12378 D protein TprB 10396..12378 Treponema pallidum subsp. pallidum SS14 6333131 YP_001933018.1 CDS TPASS_0012 NC_010741.1 12372 12545 D hypothetical protein 12372..12545 Treponema pallidum subsp. pallidum SS14 6333144 YP_001933019.1 CDS TPASS_0013 NC_010741.1 12542 13207 D hypothetical protein 12542..13207 Treponema pallidum subsp. pallidum SS14 6333129 YP_001933020.1 CDS TPASS_0014 NC_010741.1 13164 13772 D hypothetical protein 13164..13772 Treponema pallidum subsp. pallidum SS14 6333761 YP_001933021.1 CDS pheT NC_010741.1 13963 15777 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit beta 13963..15777 Treponema pallidum subsp. pallidum SS14 6333768 YP_001933022.1 CDS lon1 NC_010741.1 15740 18313 D ATP-dependent protease LA 15740..18313 Treponema pallidum subsp. pallidum SS14 6333130 YP_001933023.1 CDS TPASS_0017 NC_010741.1 18401 19348 D hypothetical protein 18401..19348 Treponema pallidum subsp. pallidum SS14 6333127 YP_001933024.1 CDS TPASS_0018 NC_010741.1 19415 21388 D transcription elongation factor 19415..21388 Treponema pallidum subsp. pallidum SS14 6332852 YP_001933025.1 CDS greA NC_010741.1 21555 22043 D transcription elongation factor GreA 21555..22043 Treponema pallidum subsp. pallidum SS14 6333766 YP_001933026.1 CDS TPASS_0020 NC_010741.1 22043 24166 D protein 76K 22043..24166 Treponema pallidum subsp. pallidum SS14 6333770 YP_001933027.1 CDS TPASS_0021 NC_010741.1 25104 25370 D hypothetical protein 25104..25370 Treponema pallidum subsp. pallidum SS14 6332872 YP_001933028.1 CDS TPASS_0022 NC_010741.1 25325 27493 D hypothetical protein 25325..27493 Treponema pallidum subsp. pallidum SS14 6333189 YP_001933029.1 CDS TPASS_0023 NC_010741.1 27554 28885 D sodium- and chloride- dependent transporter 27554..28885 Treponema pallidum subsp. pallidum SS14 6333184 YP_001933030.1 CDS TPASS_0024 NC_010741.1 29065 29775 D hypothetical protein 29065..29775 Treponema pallidum subsp. pallidum SS14 6333763 YP_001933031.1 CDS TPASS_0025 NC_010741.1 29854 32925 R hypothetical protein complement(29854..32925) Treponema pallidum subsp. pallidum SS14 6332893 YP_001933032.1 CDS fliG1 NC_010741.1 32954 33976 R flagellar motor switch protein complement(32954..33976) Treponema pallidum subsp. pallidum SS14 6332900 YP_001933033.1 CDS TPASS_0027 NC_010741.1 34202 35425 D hemolysin 34202..35425 Treponema pallidum subsp. pallidum SS14 6332891 YP_001933034.1 CDS TPASS_0028 NC_010741.1 35439 36800 D hemolysin 35439..36800 Treponema pallidum subsp. pallidum SS14 6333769 YP_001933035.1 CDS murA NC_010741.1 36908 38185 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 36908..38185 Treponema pallidum subsp. pallidum SS14 6333742 YP_001933036.1 CDS groEL NC_010741.1 38304 39938 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 38304..39938 Treponema pallidum subsp. pallidum SS14 6333183 YP_001933037.1 CDS TPASS_0031 NC_010741.1 40002 40280 D hypothetical protein 40002..40280 Treponema pallidum subsp. pallidum SS14 6333177 YP_001933038.1 CDS TPASS_0032 NC_010741.1 40277 41077 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(40277..41077) Treponema pallidum subsp. pallidum SS14 6332889 YP_001933039.1 CDS TPASS_0033 NC_010741.1 41074 41685 R hypothetical protein complement(41074..41685) Treponema pallidum subsp. pallidum SS14 6333152 YP_001933040.1 CDS TPASS_0034 NC_010741.1 41786 42736 R ABC transporter, periplasmic binding protein complement(41786..42736) Treponema pallidum subsp. pallidum SS14 6333179 YP_001933041.1 CDS TPASS_0035 NC_010741.1 42934 43650 D ABC transporter, ATP-binding protein 42934..43650 Treponema pallidum subsp. pallidum SS14 6333554 YP_001933042.1 CDS TPASS_0036 NC_010741.1 43650 44450 D ABC transporter, permease protein 43650..44450 Treponema pallidum subsp. pallidum SS14 6333115 YP_001933043.1 CDS TPASS_0037 NC_010741.1 44559 45554 R D-specific D-2-hydroxyacid dehydrogenase complement(44559..45554) Treponema pallidum subsp. pallidum SS14 6333173 YP_001933044.1 CDS pfoS/R NC_010741.1 45651 46703 R regulatory protein PfoS/R complement(45651..46703) Treponema pallidum subsp. pallidum SS14 6333176 YP_001933045.1 CDS TPASS_0039 NC_010741.1 46752 46910 D hypothetical protein 46752..46910 Treponema pallidum subsp. pallidum SS14 6332888 YP_001933046.1 CDS mcp1 NC_010741.1 47588 49381 D methyl-accepting chemotaxis protein 47588..49381 Treponema pallidum subsp. pallidum SS14 6333175 YP_001933047.1 CDS TPASS_0041 NC_010741.1 49383 49505 D hypothetical protein 49383..49505 Treponema pallidum subsp. pallidum SS14 6333169 YP_001933048.1 CDS TPASS_0042 NC_010741.1 49502 50434 D hypothetical protein 49502..50434 Treponema pallidum subsp. pallidum SS14 6333174 YP_001933049.1 CDS TPASS_0043 NC_010741.1 50415 52547 D soluble lytic transglycosylase 50415..52547 Treponema pallidum subsp. pallidum SS14 6333170 YP_001933050.1 CDS gidA NC_010741.1 52587 54479 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 52587..54479 Treponema pallidum subsp. pallidum SS14 6333171 YP_001933051.1 CDS TPASS_0045 NC_010741.1 54535 55434 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(54535..55434) Treponema pallidum subsp. pallidum SS14 6333165 YP_001933052.1 CDS TPASS_0046 NC_010741.1 55796 56497 R hypothetical protein complement(55796..56497) Treponema pallidum subsp. pallidum SS14 6332886 YP_001933053.1 CDS TPASS_0047 NC_010741.1 56515 57036 R hypothetical protein complement(56515..57036) Treponema pallidum subsp. pallidum SS14 6333759 YP_001933054.1 CDS TPASS_0048 NC_010741.1 57042 57473 R hypothetical protein complement(57042..57473) Treponema pallidum subsp. pallidum SS14 6333172 YP_001933055.1 CDS TPASS_0049 NC_010741.1 57495 58523 R hypothetical protein complement(57495..58523) Treponema pallidum subsp. pallidum SS14 6332885 YP_001933056.1 CDS TPASS_0050 NC_010741.1 58816 59424 R hypothetical protein complement(58816..59424) Treponema pallidum subsp. pallidum SS14 6333168 YP_001933057.1 CDS prfA NC_010741.1 59575 60630 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 59575..60630 Treponema pallidum subsp. pallidum SS14 6333162 YP_001933058.1 CDS hemK NC_010741.1 60600 61646 D protoporphyrinogen oxidase 60600..61646 Treponema pallidum subsp. pallidum SS14 6333163 YP_001933059.1 CDS nrdF NC_010741.1 61735 62790 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(61735..62790) Treponema pallidum subsp. pallidum SS14 6333166 YP_001933060.1 CDS TPASS_0054 NC_010741.1 62961 63920 D hypothetical protein 62961..63920 Treponema pallidum subsp. pallidum SS14 6333745 YP_001933061.1 CDS TPASS_0055 NC_010741.1 64127 64363 D hypothetical protein 64127..64363 Treponema pallidum subsp. pallidum SS14 6332884 YP_001933062.1 CDS oadA NC_010741.1 64360 66141 D catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 64360..66141 Treponema pallidum subsp. pallidum SS14 6332881 YP_001933063.1 CDS oadB NC_010741.1 66153 67562 D oxaloacetate decarboxylase, subunit beta 66153..67562 Treponema pallidum subsp. pallidum SS14 6333757 YP_001933064.1 CDS dnaB NC_010741.1 67637 68953 R replicative DNA helicase DnaB complement(67637..68953) Treponema pallidum subsp. pallidum SS14 6333161 YP_001933065.1 CDS TPASS_0059 NC_010741.1 68937 69164 R hypothetical protein complement(68937..69164) Treponema pallidum subsp. pallidum SS14 6333167 YP_001933066.1 CDS rplI NC_010741.1 69170 69640 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(69170..69640) Treponema pallidum subsp. pallidum SS14 6333160 YP_001933067.1 CDS rpsR NC_010741.1 69746 70045 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(69746..70045) Treponema pallidum subsp. pallidum SS14 6333823 YP_001933068.1 CDS ssb NC_010741.1 70162 70692 R single-strand DNA binding protein Ssb complement(70162..70692) Treponema pallidum subsp. pallidum SS14 6333157 YP_001933069.1 CDS rpsF NC_010741.1 70701 70982 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(70701..70982) Treponema pallidum subsp. pallidum SS14 6333158 YP_001933070.1 CDS TPASS_0064 NC_010741.1 71124 71699 D hypothetical protein 71124..71699 Treponema pallidum subsp. pallidum SS14 6332880 YP_001933071.1 CDS TPASS_0065 NC_010741.1 71773 72360 D hypothetical protein 71773..72360 Treponema pallidum subsp. pallidum SS14 6333159 YP_001933072.1 CDS TPASS_0066 NC_010741.1 72344 72658 D hypothetical protein 72344..72658 Treponema pallidum subsp. pallidum SS14 6333156 YP_001933073.1 CDS TPASS_0067 NC_010741.1 72646 73827 D hypothetical protein 72646..73827 Treponema pallidum subsp. pallidum SS14 6332879 YP_001933074.1 CDS TPASS_0068 NC_010741.1 74008 75030 D hypothetical protein 74008..75030 Treponema pallidum subsp. pallidum SS14 6333820 YP_001933075.1 CDS TPASS_0069 NC_010741.1 75086 75616 R hypothetical protein complement(75086..75616) Treponema pallidum subsp. pallidum SS14 6333154 YP_001933076.1 CDS TPASS_0070 NC_010741.1 75466 75852 R hypothetical protein complement(75466..75852) Treponema pallidum subsp. pallidum SS14 6333822 YP_001933077.1 CDS clpB NC_010741.1 75903 78539 R ATP-dependent Clp protease, subunit B complement(75903..78539) Treponema pallidum subsp. pallidum SS14 6332878 YP_001933078.1 CDS TPASS_0072 NC_010741.1 78743 79015 D hypothetical protein 78743..79015 Treponema pallidum subsp. pallidum SS14 6333819 YP_001933079.1 CDS TPASS_0073 NC_010741.1 79085 80626 R hypothetical protein complement(79085..80626) Treponema pallidum subsp. pallidum SS14 6333821 YP_001933080.1 CDS y4oP NC_010741.1 80931 82340 D sugar ABC transporter, periplasmic binding protein 80931..82340 Treponema pallidum subsp. pallidum SS14 6333180 YP_001933081.1 CDS y4oQ NC_010741.1 82459 83349 D sugar ABC transporter, permease protein 82459..83349 Treponema pallidum subsp. pallidum SS14 6333153 YP_001933082.1 CDS y4oR NC_010741.1 83389 84210 D sugar ABC transporter, permease protein 83389..84210 Treponema pallidum subsp. pallidum SS14 6332877 YP_001933083.1 CDS cap NC_010741.1 84251 85867 D capsular polysaccharide biosynthesis protein 84251..85867 Treponema pallidum subsp. pallidum SS14 6332876 YP_001933084.1 CDS spsC NC_010741.1 85872 87110 D spore coat polysaccharide biosynthesis protein 85872..87110 Treponema pallidum subsp. pallidum SS14 6333818 YP_001933085.1 CDS TPASS_0079 NC_010741.1 87038 89260 D hypothetical protein 87038..89260 Treponema pallidum subsp. pallidum SS14 6333203 YP_001933086.1 CDS TPASS_0080 NC_010741.1 89257 89724 D quinoline 2-oxidoreductase 89257..89724 Treponema pallidum subsp. pallidum SS14 6333815 YP_001933087.1 CDS TPASS_0081 NC_010741.1 89731 90579 D hypothetical protein 89731..90579 Treponema pallidum subsp. pallidum SS14 6332890 YP_001933088.1 CDS fhlA NC_010741.1 90626 92428 R formate hydrogenlyase transcriptional activator FhlA complement(90626..92428) Treponema pallidum subsp. pallidum SS14 6333205 YP_001933089.1 CDS TPASS_0083 NC_010741.1 93174 94454 D hypothetical protein 93174..94454 Treponema pallidum subsp. pallidum SS14 6333811 YP_001933090.1 CDS TPASS_0084 NC_010741.1 94434 94667 R hypothetical protein complement(94434..94667) Treponema pallidum subsp. pallidum SS14 6333817 YP_001933091.1 CDS ptsN1 NC_010741.1 94781 95227 R PTS system, nitrogen regulatory IIA component complement(94781..95227) Treponema pallidum subsp. pallidum SS14 6333813 YP_001933092.1 CDS TPASS_0086 NC_010741.1 95308 96252 D hypothetical protein 95308..96252 Treponema pallidum subsp. pallidum SS14 6333164 YP_001933093.1 CDS TPASS_0087 NC_010741.1 96255 96794 R hypothetical protein complement(96255..96794) Treponema pallidum subsp. pallidum SS14 6333150 YP_001933094.1 CDS TPASS_0088 NC_010741.1 96778 97392 R hypothetical protein complement(96778..97392) Treponema pallidum subsp. pallidum SS14 6333814 YP_001933095.1 CDS TPASS_0089 NC_010741.1 97422 98657 R cyclic nucleotide binding protein complement(97422..98657) Treponema pallidum subsp. pallidum SS14 6333073 YP_001933096.1 CDS murB NC_010741.1 98740 99804 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(98740..99804) Treponema pallidum subsp. pallidum SS14 6333812 YP_001933097.1 CDS cysS NC_010741.1 99986 101548 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 99986..101548 Treponema pallidum subsp. pallidum SS14 6333805 YP_001933098.1 CDS rpoE NC_010741.1 101619 102107 D RNA polymerase sigma-24 factor 101619..102107 Treponema pallidum subsp. pallidum SS14 6333791 YP_001933099.1 CDS TPASS_0093 NC_010741.1 102091 102738 D hypothetical protein 102091..102738 Treponema pallidum subsp. pallidum SS14 6333807 YP_001933100.1 CDS pta NC_010741.1 102876 103886 D phosphate acetyltransferase 102876..103886 Treponema pallidum subsp. pallidum SS14 6333808 YP_001933101.1 CDS TPASS_0095 NC_010741.1 103886 105832 D hypothetical protein 103886..105832 Treponema pallidum subsp. pallidum SS14 6332871 YP_001933102.1 CDS TPASS_0096 NC_010741.1 105906 106268 R dnaK suppressor complement(105906..106268) Treponema pallidum subsp. pallidum SS14 6333806 YP_001933103.1 CDS infA NC_010741.1 106438 106656 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 106438..106656 Treponema pallidum subsp. pallidum SS14 6333810 YP_001933104.1 CDS TPASS_0098 NC_010741.1 106716 107366 R heat-shock protein complement(106716..107366) Treponema pallidum subsp. pallidum SS14 6333149 YP_001933105.1 CDS pyrH NC_010741.1 107370 108125 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(107370..108125) Treponema pallidum subsp. pallidum SS14 6333125 YP_001933106.1 CDS TPASS_0100 NC_010741.1 108320 108922 D thioredoxin 108320..108922 Treponema pallidum subsp. pallidum SS14 6333809 YP_001933107.1 CDS ccdA NC_010741.1 108915 109709 D cytochrome c biogenesis protein 108915..109709 Treponema pallidum subsp. pallidum SS14 6332873 YP_001933108.1 CDS rep NC_010741.1 109747 111720 R Rep helicase, single-stranded DNA-dependent ATPase complement(109747..111720) Treponema pallidum subsp. pallidum SS14 6333802 YP_001933109.1 CDS TPASS_0103 NC_010741.1 111785 113608 D ATP-dependent DNA helicase 111785..113608 Treponema pallidum subsp. pallidum SS14 6333803 YP_001933110.1 CDS ushA NC_010741.1 113855 115636 D 5'-nucleotidase 113855..115636 Treponema pallidum subsp. pallidum SS14 6333801 YP_001933111.1 CDS polA NC_010741.1 115803 118796 D DNA polymerase I 115803..118796 Treponema pallidum subsp. pallidum SS14 6333146 YP_001933112.1 CDS TPASS_0106 NC_010741.1 118828 120360 R carnitine transporter complement(118828..120360) Treponema pallidum subsp. pallidum SS14 6333804 YP_001933113.1 CDS licC NC_010741.1 120341 121918 R protein LicC complement(120341..121918) Treponema pallidum subsp. pallidum SS14 6333148 YP_001933114.1 CDS pfk NC_010741.1 122272 123657 R catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase complement(122272..123657) Treponema pallidum subsp. pallidum SS14 6333147 YP_001933115.1 CDS TPASS_0109 NC_010741.1 123759 124637 R rRNA methylase complement(123759..124637) Treponema pallidum subsp. pallidum SS14 6333772 YP_001933116.1 CDS TPASS_0110 NC_010741.1 125178 126911 D hypothetical protein 125178..126911 Treponema pallidum subsp. pallidum SS14 6333793 YP_001933117.1 CDS rpoN NC_010741.1 126971 128398 D RNA polymerase sigma-54 factor 126971..128398 Treponema pallidum subsp. pallidum SS14 6332870 YP_001933118.1 CDS pepC NC_010741.1 128395 129747 R aminopeptidase C complement(128395..129747) Treponema pallidum subsp. pallidum SS14 6332875 YP_001933119.1 CDS hflK NC_010741.1 129889 130875 D Lambda CII stability-governing protein 129889..130875 Treponema pallidum subsp. pallidum SS14 6333141 YP_001933120.1 CDS hflC NC_010741.1 130880 131875 D Lambda CII stability-governing protein 130880..131875 Treponema pallidum subsp. pallidum SS14 6332859 YP_001933121.1 CDS thiD NC_010741.1 131900 132709 R phosphomethypyrimidine kinase complement(131900..132709) Treponema pallidum subsp. pallidum SS14 6332882 YP_001933122.1 CDS uvrB NC_010741.1 132860 134866 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 132860..134866 Treponema pallidum subsp. pallidum SS14 6333140 YP_001933123.1 CDS tprC NC_010741.1 134898 136694 R protein TprC complement(134898..136694) Treponema pallidum subsp. pallidum SS14 6332868 YP_001933124.1 CDS TPASS_0118 NC_010741.1 136774 138039 R hypothetical protein complement(136774..138039) Treponema pallidum subsp. pallidum SS14 6333788 YP_001933125.1 CDS yaeE NC_010741.1 138137 138796 R amino acid ABC transporter, permease protein complement(138137..138796) Treponema pallidum subsp. pallidum SS14 6333139 YP_001933126.1 CDS TPASS_0120 NC_010741.1 138796 139605 R amino acid ABC transporter, ATP-binding protein complement(138796..139605) Treponema pallidum subsp. pallidum SS14 6332906 YP_001933127.1 CDS TPASS_0121 NC_010741.1 139735 140802 D hypothetical protein 139735..140802 Treponema pallidum subsp. pallidum SS14 6333137 YP_001933128.1 CDS pckA NC_010741.1 141022 142878 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(141022..142878) Treponema pallidum subsp. pallidum SS14 6333142 YP_001933129.1 CDS TPASS_0123 NC_010741.1 142984 145554 D hypothetical protein 142984..145554 Treponema pallidum subsp. pallidum SS14 6332867 YP_001933130.1 CDS TPASS_0124 NC_010741.1 145568 146674 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 145568..146674 Treponema pallidum subsp. pallidum SS14 6333785 YP_001933131.1 CDS exoA NC_010741.1 146751 147545 D exodeoxyribonuclease 146751..147545 Treponema pallidum subsp. pallidum SS14 6333135 YP_001933132.1 CDS TPASS_0126 NC_010741.1 147609 148484 R hypothetical protein complement(147609..148484) Treponema pallidum subsp. pallidum SS14 6333787 YP_001933133.1 CDS TPASS_0127 NC_010741.1 149847 150227 D hypothetical protein 149847..150227 Treponema pallidum subsp. pallidum SS14 6333181 YP_001933134.1 CDS TPASS_0128 NC_010741.1 150729 151076 D hypothetical protein 150729..151076 Treponema pallidum subsp. pallidum SS14 6332902 YP_001933135.1 CDS TPASS_0129 NC_010741.1 151061 151537 D hypothetical protein 151061..151537 Treponema pallidum subsp. pallidum SS14 6333781 YP_001933136.1 CDS TPASS_0130 NC_010741.1 151866 152285 R hypothetical protein complement(151866..152285) Treponema pallidum subsp. pallidum SS14 6332866 YP_001933137.1 CDS tprD NC_010741.1 152357 154153 R protein TprD complement(152357..154153) Treponema pallidum subsp. pallidum SS14 6333783 YP_001933138.1 CDS TPASS_0132 NC_010741.1 154331 154408 R hypothetical protein complement(154331..154408) Treponema pallidum subsp. pallidum SS14 6333782 YP_001933139.1 CDS TPASS_0133 NC_010741.1 154393 155625 R hypothetical protein complement(154393..155625) Treponema pallidum subsp. pallidum SS14 6333784 YP_001933140.1 CDS TPASS_0134 NC_010741.1 155622 156752 R hypothetical protein complement(155622..156752) Treponema pallidum subsp. pallidum SS14 6333136 YP_001933141.1 CDS TPASS_0135 NC_010741.1 156704 157645 R hypothetical protein complement(156704..157645) Treponema pallidum subsp. pallidum SS14 6333778 YP_001933142.1 CDS TPASS_0136 NC_010741.1 157985 159463 D hypothetical protein 157985..159463 Treponema pallidum subsp. pallidum SS14 6333777 YP_001933143.1 CDS TPASS_0137 NC_010741.1 159442 159579 D hypothetical protein 159442..159579 Treponema pallidum subsp. pallidum SS14 6333780 YP_001933144.1 CDS TPASS_0138 NC_010741.1 159716 160453 R hypothetical protein complement(159716..160453) Treponema pallidum subsp. pallidum SS14 6333779 YP_001933145.1 CDS TPASS_0139 NC_010741.1 160461 161153 R hypothetical protein complement(160461..161153) Treponema pallidum subsp. pallidum SS14 6333134 YP_001933146.1 CDS ntpJ NC_010741.1 161193 162920 R K+ transport protein complement(161193..162920) Treponema pallidum subsp. pallidum SS14 6333775 YP_001933147.1 CDS dat NC_010741.1 163092 163625 D methylated-DNA-protein-cysteine S-methyltransferase 163092..163625 Treponema pallidum subsp. pallidum SS14 6333211 YP_001933148.1 CDS TPASS_0142 NC_010741.1 163576 164238 R thiamine ABC transporter ATP-binding protein complement(163576..164238) Treponema pallidum subsp. pallidum SS14 6333132 YP_001933149.1 CDS TPASS_0143 NC_010741.1 164231 166012 R thiamine ABC transporter permease complement(164231..166012) Treponema pallidum subsp. pallidum SS14 6333145 YP_001933150.1 CDS TPASS_0144 NC_010741.1 165970 166977 R thiamine ABC transporter, thiamine-binding periplasmic protein complement(165970..166977) Treponema pallidum subsp. pallidum SS14 6333774 YP_001933151.1 CDS TPASS_0145 NC_010741.1 167087 169057 D long-chain-fatty-acid--CoA ligase 167087..169057 Treponema pallidum subsp. pallidum SS14 6332894 YP_001933152.1 CDS TPASS_0147 NC_010741.1 170462 172321 R alpha-amylase 1 complement(170462..172321) Treponema pallidum subsp. pallidum SS14 6333202 YP_001933153.1 CDS TPASS_0148 NC_010741.1 172318 172896 R hypothetical protein complement(172318..172896) Treponema pallidum subsp. pallidum SS14 6333201 YP_001933154.1 CDS TPASS_0149 NC_010741.1 172890 173483 R hypothetical protein complement(172890..173483) Treponema pallidum subsp. pallidum SS14 6333200 YP_001933155.1 CDS TPASS_0150 NC_010741.1 173476 173943 R hypothetical protein complement(173476..173943) Treponema pallidum subsp. pallidum SS14 6332898 YP_001933156.1 CDS TPASS_0151 NC_010741.1 173927 174946 R hypothetical protein complement(173927..174946) Treponema pallidum subsp. pallidum SS14 6332899 YP_001933157.1 CDS rnfC NC_010741.1 174933 176477 R nitrogen fixation protein complement(174933..176477) Treponema pallidum subsp. pallidum SS14 6333196 YP_001933158.1 CDS TPASS_0153 NC_010741.1 176553 177044 R hypothetical protein complement(176553..177044) Treponema pallidum subsp. pallidum SS14 6333195 YP_001933159.1 CDS TPASS_0154 NC_010741.1 177269 178306 D hypothetical protein 177269..178306 Treponema pallidum subsp. pallidum SS14 6333194 YP_001933160.1 CDS TPASS_0155 NC_010741.1 178312 179427 D fibronectin binding protein 178312..179427 Treponema pallidum subsp. pallidum SS14 6333197 YP_001933161.1 CDS TPASS_0156 NC_010741.1 179468 179872 R hypothetical protein complement(179468..179872) Treponema pallidum subsp. pallidum SS14 6333198 YP_001933162.1 CDS TPASS_0157 NC_010741.1 179869 180771 R hypothetical protein complement(179869..180771) Treponema pallidum subsp. pallidum SS14 6333190 YP_001933163.1 CDS TPASS_0158 NC_010741.1 180768 181454 R hypothetical protein complement(180768..181454) Treponema pallidum subsp. pallidum SS14 6333188 YP_001933164.1 CDS TPASS_0159 NC_010741.1 181458 182486 R hypothetical protein complement(181458..182486) Treponema pallidum subsp. pallidum SS14 6333192 YP_001933165.1 CDS proS NC_010741.1 182602 184455 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(182602..184455) Treponema pallidum subsp. pallidum SS14 6333191 YP_001933166.1 CDS TPASS_0161 NC_010741.1 184458 184550 R hypothetical protein complement(184458..184550) Treponema pallidum subsp. pallidum SS14 6332897 YP_001933167.1 CDS ruvB NC_010741.1 184567 185619 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(184567..185619) Treponema pallidum subsp. pallidum SS14 6333193 YP_001933168.1 CDS troA NC_010741.1 185794 186720 D ABC transporter, periplasmic binding protein 185794..186720 Treponema pallidum subsp. pallidum SS14 6333216 YP_001933169.1 CDS troB NC_010741.1 186868 187668 D ABC transporter, ATP-binding protein 186868..187668 Treponema pallidum subsp. pallidum SS14 6333799 YP_001933170.1 CDS troC NC_010741.1 187640 188536 D ABC transporter, permease protein 187640..188536 Treponema pallidum subsp. pallidum SS14 6333199 YP_001933171.1 CDS troD NC_010741.1 188540 189643 D ABC transporter, permease protein 188540..189643 Treponema pallidum subsp. pallidum SS14 6332907 YP_001933172.1 CDS troR NC_010741.1 189653 190114 D cation-activated repressor protein 189653..190114 Treponema pallidum subsp. pallidum SS14 6333204 YP_001933173.1 CDS gpmA NC_010741.1 190194 190949 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 190194..190949 Treponema pallidum subsp. pallidum SS14 6333606 YP_001933174.1 CDS TPASS_0169 NC_010741.1 191173 191271 D hypothetical protein 191173..191271 Treponema pallidum subsp. pallidum SS14 6333795 YP_001933175.1 CDS pfs NC_010741.1 191268 192077 D protein Pfs 191268..192077 Treponema pallidum subsp. pallidum SS14 6333603 YP_001933176.1 CDS tpp15 NC_010741.1 192177 192605 D lipoprotein, 15 kDa 192177..192605 Treponema pallidum subsp. pallidum SS14 6333602 YP_001933177.1 CDS TPASS_0172 NC_010741.1 192753 193280 R hypothetical protein complement(192753..193280) Treponema pallidum subsp. pallidum SS14 6333604 YP_001933178.1 CDS TPASS_0173 NC_010741.1 193315 193998 R hypothetical protein complement(193315..193998) Treponema pallidum subsp. pallidum SS14 6332822 YP_001933179.1 CDS TPASS_0174 NC_010741.1 193967 194809 R hypothetical protein complement(193967..194809) Treponema pallidum subsp. pallidum SS14 6333039 YP_001933180.1 CDS TPASS_0175 NC_010741.1 194559 195191 R hypothetical protein complement(194559..195191) Treponema pallidum subsp. pallidum SS14 6333600 YP_001933181.1 CDS TPASS_0176 NC_010741.1 195222 195488 R hypothetical protein complement(195222..195488) Treponema pallidum subsp. pallidum SS14 6333038 YP_001933182.1 CDS TPASS_0177 NC_010741.1 195485 196795 R hypothetical protein complement(195485..196795) Treponema pallidum subsp. pallidum SS14 6332821 YP_001933183.1 CDS TPASS_0178 NC_010741.1 196889 197815 R hypothetical protein complement(196889..197815) Treponema pallidum subsp. pallidum SS14 6333037 YP_001933184.1 CDS TPASS_0179 NC_010741.1 197815 199698 R hypothetical protein complement(197815..199698) Treponema pallidum subsp. pallidum SS14 6332820 YP_001933185.1 CDS TPASS_0180 NC_010741.1 199640 199798 R hypothetical protein complement(199640..199798) Treponema pallidum subsp. pallidum SS14 6333601 YP_001933186.1 CDS TPASS_0181 NC_010741.1 199791 200234 D hypothetical protein 199791..200234 Treponema pallidum subsp. pallidum SS14 6333597 YP_001933187.1 CDS TPASS_0182 NC_010741.1 200074 200853 D hypothetical protein 200074..200853 Treponema pallidum subsp. pallidum SS14 6333036 YP_001933188.1 CDS TPASS_0183 NC_010741.1 200856 201701 R hypothetical protein complement(200856..201701) Treponema pallidum subsp. pallidum SS14 6333034 YP_001933189.1 CDS smpB NC_010741.1 201706 202170 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(201706..202170) Treponema pallidum subsp. pallidum SS14 6333595 YP_001933190.1 CDS sip NC_010741.1 202258 202965 D signal peptidase I 202258..202965 Treponema pallidum subsp. pallidum SS14 6333592 YP_001933191.1 CDS TPASS_0186 NC_010741.1 203020 204201 D oxygen-independent coproporphyrinogen III oxidase 203020..204201 Treponema pallidum subsp. pallidum SS14 6333591 YP_001933192.1 CDS tuf NC_010741.1 204265 205752 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 204265..205752 Treponema pallidum subsp. pallidum SS14 6333586 YP_001933193.1 CDS rpsJ NC_010741.1 205824 206132 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 205824..206132 Treponema pallidum subsp. pallidum SS14 6333593 YP_001933194.1 CDS rplC NC_010741.1 206179 206805 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 206179..206805 Treponema pallidum subsp. pallidum SS14 6333033 YP_001933195.1 CDS rplD NC_010741.1 206819 207469 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 206819..207469 Treponema pallidum subsp. pallidum SS14 6333590 YP_001933196.1 CDS rplW NC_010741.1 207456 207740 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 207456..207740 Treponema pallidum subsp. pallidum SS14 6332819 YP_001933197.1 CDS rplB NC_010741.1 207796 208617 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 207796..208617 Treponema pallidum subsp. pallidum SS14 6332817 YP_001933198.1 CDS rpsS NC_010741.1 208627 208914 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 208627..208914 Treponema pallidum subsp. pallidum SS14 6333585 YP_001933199.1 CDS rplV NC_010741.1 208923 209297 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 208923..209297 Treponema pallidum subsp. pallidum SS14 6333032 YP_001933200.1 CDS rpsC NC_010741.1 209281 210024 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 209281..210024 Treponema pallidum subsp. pallidum SS14 6333030 YP_001933201.1 CDS rplP NC_010741.1 210028 210447 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 210028..210447 Treponema pallidum subsp. pallidum SS14 6333029 YP_001933202.1 CDS rpmC NC_010741.1 210462 210680 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 210462..210680 Treponema pallidum subsp. pallidum SS14 6333584 YP_001933203.1 CDS rpsQ NC_010741.1 210695 210949 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 210695..210949 Treponema pallidum subsp. pallidum SS14 6333583 YP_001933204.1 CDS rplN NC_010741.1 210962 211330 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 210962..211330 Treponema pallidum subsp. pallidum SS14 6333581 YP_001933205.1 CDS rplX NC_010741.1 211342 211653 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 211342..211653 Treponema pallidum subsp. pallidum SS14 6333028 YP_001933206.1 CDS rplE NC_010741.1 211650 212207 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 211650..212207 Treponema pallidum subsp. pallidum SS14 6332816 YP_001933207.1 CDS rpsN NC_010741.1 212219 212404 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 212219..212404 Treponema pallidum subsp. pallidum SS14 6333582 YP_001933208.1 CDS rpsH NC_010741.1 212420 212818 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 212420..212818 Treponema pallidum subsp. pallidum SS14 6332815 YP_001933209.1 CDS rplF NC_010741.1 212828 213367 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 212828..213367 Treponema pallidum subsp. pallidum SS14 6333571 YP_001933210.1 CDS rplR NC_010741.1 213376 213738 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 213376..213738 Treponema pallidum subsp. pallidum SS14 6333026 YP_001933211.1 CDS rpsE NC_010741.1 213747 214265 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 213747..214265 Treponema pallidum subsp. pallidum SS14 6333580 YP_001933212.1 CDS rpmD NC_010741.1 214268 214453 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 214268..214453 Treponema pallidum subsp. pallidum SS14 6333025 YP_001933213.1 CDS rplO NC_010741.1 214453 214914 D late assembly protein; 50S ribosomal protein L15 214453..214914 Treponema pallidum subsp. pallidum SS14 6333576 YP_001933214.1 CDS secY NC_010741.1 214922 216274 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 214922..216274 Treponema pallidum subsp. pallidum SS14 6333569 YP_001933215.1 CDS rpmJ NC_010741.1 216279 216392 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 216279..216392 Treponema pallidum subsp. pallidum SS14 6333578 YP_001933216.1 CDS rpsM NC_010741.1 216408 216773 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 216408..216773 Treponema pallidum subsp. pallidum SS14 6333024 YP_001933217.1 CDS rpsK NC_010741.1 216791 217171 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 216791..217171 Treponema pallidum subsp. pallidum SS14 6333573 YP_001933218.1 CDS rpoA NC_010741.1 217186 218241 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 217186..218241 Treponema pallidum subsp. pallidum SS14 6333572 YP_001933219.1 CDS rplQ NC_010741.1 218231 218725 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 218231..218725 Treponema pallidum subsp. pallidum SS14 6333570 YP_001933220.1 CDS TPASS_0214 NC_010741.1 218749 218946 D hypothetical protein 218749..218946 Treponema pallidum subsp. pallidum SS14 6333566 YP_001933221.1 CDS grpE NC_010741.1 219152 219814 D chaperone protein GrpE 219152..219814 Treponema pallidum subsp. pallidum SS14 6332813 YP_001933222.1 CDS dnaK NC_010741.1 219930 221837 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 219930..221837 Treponema pallidum subsp. pallidum SS14 6333567 YP_001933223.1 CDS TPASS_0218 NC_010741.1 223384 224853 D sigma factor SigB regulation protein 223384..224853 Treponema pallidum subsp. pallidum SS14 6332812 YP_001933224.1 CDS TPASS_0219 NC_010741.1 224857 227004 D sigma factor SigB regulation protein 224857..227004 Treponema pallidum subsp. pallidum SS14 6333565 YP_001933225.1 CDS spoIIAA1 NC_010741.1 227033 227359 D anti-sigma F factor antagonist 227033..227359 Treponema pallidum subsp. pallidum SS14 6333562 YP_001933226.1 CDS TPASS_0221 NC_010741.1 227360 228142 D D,D-carboxypeptidase 227360..228142 Treponema pallidum subsp. pallidum SS14 6332811 YP_001933227.1 CDS TPASS_0222 NC_010741.1 228152 228598 D hypothetical protein 228152..228598 Treponema pallidum subsp. pallidum SS14 6333561 YP_001933228.1 CDS TPASS_0223 NC_010741.1 228866 230173 D hypothetical protein 228866..230173 Treponema pallidum subsp. pallidum SS14 6333564 YP_001933229.1 CDS TPASS_0224 NC_010741.1 230210 230314 D hypothetical protein 230210..230314 Treponema pallidum subsp. pallidum SS14 6333020 YP_001933230.1 CDS TPASS_0225 NC_010741.1 230360 231100 D leucine-rich repeat protein TpLRR 230360..231100 Treponema pallidum subsp. pallidum SS14 6332810 YP_001933231.1 CDS TPASS_0226 NC_010741.1 236252 236938 R hypothetical protein complement(236252..236938) Treponema pallidum subsp. pallidum SS14 6333555 YP_001933232.1 CDS TPASS_0227 NC_010741.1 236991 237758 R cobalt ABC transporter, ATP-binding protein complement(236991..237758) Treponema pallidum subsp. pallidum SS14 6333018 YP_001933233.1 CDS TPASS_0228 NC_010741.1 237825 238640 R biotin synthase complement(237825..238640) Treponema pallidum subsp. pallidum SS14 6332808 YP_001933234.1 CDS TPASS_0229 NC_010741.1 238584 239417 D DNA polymerase, bacteriophage-type 238584..239417 Treponema pallidum subsp. pallidum SS14 6333016 YP_001933235.1 CDS priA NC_010741.1 239422 241395 D primosomal protein N 239422..241395 Treponema pallidum subsp. pallidum SS14 6333015 YP_001933236.1 CDS TPASS_0231 NC_010741.1 241496 242146 D hypothetical protein 241496..242146 Treponema pallidum subsp. pallidum SS14 6333017 YP_001933237.1 CDS TPASS_0232 NC_010741.1 242246 242362 D hypothetical protein 242246..242362 Treponema pallidum subsp. pallidum SS14 6333552 YP_001933238.1 CDS TPASS_0233 NC_010741.1 242393 242938 D anti-sigma F factor antagonist 242393..242938 Treponema pallidum subsp. pallidum SS14 6332807 YP_001933239.1 CDS rpmG NC_010741.1 243173 243343 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 243173..243343 Treponema pallidum subsp. pallidum SS14 6333551 YP_001933240.1 CDS secE NC_010741.1 243493 243672 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 243493..243672 Treponema pallidum subsp. pallidum SS14 6333548 YP_001933241.1 CDS nusG NC_010741.1 243682 244239 D transcription antitermination protein 243682..244239 Treponema pallidum subsp. pallidum SS14 6333014 YP_001933242.1 CDS rplK NC_010741.1 244346 244786 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 244346..244786 Treponema pallidum subsp. pallidum SS14 6333013 YP_001933243.1 CDS rplA NC_010741.1 244783 245463 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 244783..245463 Treponema pallidum subsp. pallidum SS14 6333544 YP_001933244.1 CDS rplJ NC_010741.1 245465 246007 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 245465..246007 Treponema pallidum subsp. pallidum SS14 6333541 YP_001933245.1 CDS rplL NC_010741.1 246116 246505 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 246116..246505 Treponema pallidum subsp. pallidum SS14 6333012 YP_001933246.1 CDS rpoB NC_010741.1 246768 250304 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 246768..250304 Treponema pallidum subsp. pallidum SS14 6333545 YP_001933247.1 CDS rpoC NC_010741.1 250317 254567 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 250317..254567 Treponema pallidum subsp. pallidum SS14 6333543 YP_001933248.1 CDS rpsL NC_010741.1 254670 255044 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 254670..255044 Treponema pallidum subsp. pallidum SS14 6332806 YP_001933249.1 CDS rpsG NC_010741.1 255066 255536 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 255066..255536 Treponema pallidum subsp. pallidum SS14 6333011 YP_001933250.1 CDS TPASS_0245 NC_010741.1 255560 259015 D hypothetical protein 255560..259015 Treponema pallidum subsp. pallidum SS14 6333539 YP_001933251.1 CDS TPASS_0246 NC_010741.1 259161 260954 D hypothetical protein 259161..260954 Treponema pallidum subsp. pallidum SS14 6333538 YP_001933252.1 CDS amiA NC_010741.1 261005 262078 D N-acetylmuramoyl-L-alanine amidase 261005..262078 Treponema pallidum subsp. pallidum SS14 6332803 YP_001933253.1 CDS TPASS_0248 NC_010741.1 262145 262549 D hypothetical protein 262145..262549 Treponema pallidum subsp. pallidum SS14 6333533 YP_001933254.1 CDS flaA1 NC_010741.1 262628 263680 D flagellar filament outer layer protein 262628..263680 Treponema pallidum subsp. pallidum SS14 6333537 YP_001933255.1 CDS TPASS_0250a NC_010741.1 263731 263958 D hypothetical protein 263731..263958 Treponema pallidum subsp. pallidum SS14 6333532 YP_001933256.1 CDS rpsT NC_010741.1 263793 264080 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 263793..264080 Treponema pallidum subsp. pallidum SS14 6333536 YP_001933257.1 CDS TPASS_0251 NC_010741.1 264112 264429 D DNA-binding protein II 264112..264429 Treponema pallidum subsp. pallidum SS14 6333535 YP_001933258.1 CDS TPASS_0252 NC_010741.1 264419 266059 D apolipoprotein N-acyltransferase 264419..266059 Treponema pallidum subsp. pallidum SS14 6333534 YP_001933259.1 CDS TPASS_0253 NC_010741.1 266050 266463 D hypothetical protein 266050..266463 Treponema pallidum subsp. pallidum SS14 6333526 YP_001933260.1 CDS rho NC_010741.1 266700 268259 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 266700..268259 Treponema pallidum subsp. pallidum SS14 6333531 YP_001933261.1 CDS rpmE NC_010741.1 268378 268581 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 268378..268581 Treponema pallidum subsp. pallidum SS14 6333529 YP_001933262.1 CDS pgsA NC_010741.1 268626 269276 D CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 268626..269276 Treponema pallidum subsp. pallidum SS14 6333530 YP_001933263.1 CDS glpQ NC_010741.1 269373 270443 D hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 269373..270443 Treponema pallidum subsp. pallidum SS14 6332802 YP_001933264.1 CDS TPASS_0258 NC_010741.1 270509 271219 R hypothetical protein complement(270509..271219) Treponema pallidum subsp. pallidum SS14 6333004 YP_001933265.1 CDS TPASS_0259 NC_010741.1 271298 271909 D hypothetical protein 271298..271909 Treponema pallidum subsp. pallidum SS14 6333527 YP_001933266.1 CDS TPASS_0260 NC_010741.1 272040 273386 R hypothetical protein complement(272040..273386) Treponema pallidum subsp. pallidum SS14 6333524 YP_001933267.1 CDS TPASS_0261 NC_010741.1 273501 274544 D catabolite gene activator 273501..274544 Treponema pallidum subsp. pallidum SS14 6333002 YP_001933268.1 CDS crp NC_010741.1 274522 275196 D catabolite gene activator 274522..275196 Treponema pallidum subsp. pallidum SS14 6333003 YP_001933269.1 CDS TPASS_0263 NC_010741.1 275211 276995 D hypothetical protein 275211..276995 Treponema pallidum subsp. pallidum SS14 6332801 YP_001933270.1 CDS deoC NC_010741.1 277000 277656 D deoxyribose-phosphate aldolase 277000..277656 Treponema pallidum subsp. pallidum SS14 6333525 YP_001933271.1 CDS braC NC_010741.1 278088 279455 R amino acid ABC transporter, permease protein complement(278088..279455) Treponema pallidum subsp. pallidum SS14 6333001 YP_001933272.1 CDS TPASS_0266 NC_010741.1 279506 279631 D hypothetical protein 279506..279631 Treponema pallidum subsp. pallidum SS14 6333521 YP_001933273.1 CDS TPASS_0267 NC_010741.1 284740 285105 D hypothetical protein 284740..285105 Treponema pallidum subsp. pallidum SS14 6333000 YP_001933274.1 CDS TPASS_0268 NC_010741.1 285102 285755 D hypothetical protein 285102..285755 Treponema pallidum subsp. pallidum SS14 6333517 YP_001933275.1 CDS TPASS_0269 NC_010741.1 285765 287213 D hypothetical protein 285765..287213 Treponema pallidum subsp. pallidum SS14 6333513 YP_001933276.1 CDS pcnA NC_010741.1 287287 288723 D polynucleotide adenylyltransferase 287287..288723 Treponema pallidum subsp. pallidum SS14 6333518 YP_001933277.1 CDS parB NC_010741.1 288720 289694 R chromosome partitioning protein complement(288720..289694) Treponema pallidum subsp. pallidum SS14 6332798 YP_001933278.1 CDS parA NC_010741.1 289681 290442 R chromosome partitioning protein complement(289681..290442) Treponema pallidum subsp. pallidum SS14 6333515 YP_001933279.1 CDS TPASS_0273 NC_010741.1 290575 291366 D hypothetical protein 290575..291366 Treponema pallidum subsp. pallidum SS14 6333514 YP_001933280.1 CDS TPASS_0274 NC_010741.1 291404 291904 R deoxycytidylate deaminase complement(291404..291904) Treponema pallidum subsp. pallidum SS14 6332998 YP_001933281.1 CDS TPASS_0275 NC_010741.1 291993 292742 R UDP-N-acetyl-D-mannosamine transferase complement(291993..292742) Treponema pallidum subsp. pallidum SS14 6333516 YP_001933282.1 CDS TPASS_0276 NC_010741.1 292721 293605 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(292721..293605) Treponema pallidum subsp. pallidum SS14 6333512 YP_001933283.1 CDS ctp NC_010741.1 293778 295124 R carboxyl-terminal protease complement(293778..295124) Treponema pallidum subsp. pallidum SS14 6333508 YP_001933284.1 CDS TPASS_0278 NC_010741.1 295252 295380 D hypothetical protein 295252..295380 Treponema pallidum subsp. pallidum SS14 6333511 YP_001933285.1 CDS rpsA NC_010741.1 295426 298017 D proteins from Treponema appear to be a fusion of cytidylate kinase and multiple (up to 6) S1 domains; bifunctional cytidylate kinase/ribosomal protein S1 295426..298017 Treponema pallidum subsp. pallidum SS14 6332996 YP_001933286.1 CDS TPASS_0280 NC_010741.1 298014 298142 D hypothetical protein 298014..298142 Treponema pallidum subsp. pallidum SS14 6333507 YP_001933287.1 CDS TPASS_0281 NC_010741.1 298159 298287 D hypothetical protein 298159..298287 Treponema pallidum subsp. pallidum SS14 6333509 YP_001933288.1 CDS TPASS_0282 NC_010741.1 298280 298999 D hypothetical protein 298280..298999 Treponema pallidum subsp. pallidum SS14 6332995 YP_001933289.1 CDS kdtB NC_010741.1 299177 299656 D lipopolysaccharide core biosynthesis protein 299177..299656 Treponema pallidum subsp. pallidum SS14 6333506 YP_001933290.1 CDS TPASS_0284 NC_010741.1 299761 300420 D hypothetical protein 299761..300420 Treponema pallidum subsp. pallidum SS14 6332797 YP_001933291.1 CDS TPASS_0285 NC_010741.1 300360 301439 D hypothetical protein 300360..301439 Treponema pallidum subsp. pallidum SS14 6333505 YP_001933292.1 CDS TPASS_0286 NC_010741.1 301411 301776 D hypothetical protein 301411..301776 Treponema pallidum subsp. pallidum SS14 6332993 YP_001933293.1 CDS TPASS_0287 NC_010741.1 301743 302366 D hypothetical protein 301743..302366 Treponema pallidum subsp. pallidum SS14 6333504 YP_001933294.1 CDS spsF NC_010741.1 302366 303313 D spore coat polysaccharide biosynthesis protein F 302366..303313 Treponema pallidum subsp. pallidum SS14 6333502 YP_001933295.1 CDS TPASS_0289 NC_010741.1 303336 304940 D hypothetical protein 303336..304940 Treponema pallidum subsp. pallidum SS14 6332992 YP_001933296.1 CDS TPASS_0290 NC_010741.1 304995 305828 D hypothetical protein 304995..305828 Treponema pallidum subsp. pallidum SS14 6333501 YP_001933297.1 CDS TPASS_0291 NC_010741.1 305865 306746 D hypothetical protein 305865..306746 Treponema pallidum subsp. pallidum SS14 6333499 YP_001933298.1 CDS tpn50 NC_010741.1 306737 307990 D outer membrane protein TpN50 306737..307990 Treponema pallidum subsp. pallidum SS14 6333503 YP_001933299.1 CDS TPASS_0293 NC_010741.1 308002 308178 D hypothetical protein 308002..308178 Treponema pallidum subsp. pallidum SS14 6332990 YP_001933300.1 CDS prs NC_010741.1 308156 309421 D Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 308156..309421 Treponema pallidum subsp. pallidum SS14 6332991 YP_001933301.1 CDS xylB NC_010741.1 309440 310684 D carhohydrate kinase 309440..310684 Treponema pallidum subsp. pallidum SS14 6332989 YP_001933302.1 CDS TPASS_0296 NC_010741.1 310770 311405 D hypothetical protein 310770..311405 Treponema pallidum subsp. pallidum SS14 6333498 YP_001933303.1 CDS TPASS_0297 NC_010741.1 311369 312181 D hypothetical protein 311369..312181 Treponema pallidum subsp. pallidum SS14 6333495 YP_001933304.1 CDS tpn38b NC_010741.1 312314 313345 D exported protein TpN38b 312314..313345 Treponema pallidum subsp. pallidum SS14 6333497 YP_001933305.1 CDS TPASS_0299 NC_010741.1 313342 313566 D hypothetical protein 313342..313566 Treponema pallidum subsp. pallidum SS14 6332988 YP_001933306.1 CDS rbsA1 NC_010741.1 313551 315101 D ribose/galactose ABC transporter, ATP-binding protein 313551..315101 Treponema pallidum subsp. pallidum SS14 6332986 YP_001933307.1 CDS TPASS_0301 NC_010741.1 315098 316231 D hypothetical protein 315098..316231 Treponema pallidum subsp. pallidum SS14 6332987 YP_001933308.1 CDS TPASS_0302 NC_010741.1 316222 317163 D hypothetical protein 316222..317163 Treponema pallidum subsp. pallidum SS14 6333496 YP_001933309.1 CDS mutL NC_010741.1 317150 319096 R DNA mismatch repair protein MutL complement(317150..319096) Treponema pallidum subsp. pallidum SS14 6333489 YP_001933310.1 CDS TPASS_0304 NC_010741.1 319109 322225 R hypothetical protein complement(319109..322225) Treponema pallidum subsp. pallidum SS14 6333493 YP_001933311.1 CDS pyrG NC_010741.1 322152 323885 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 322152..323885 Treponema pallidum subsp. pallidum SS14 6333491 YP_001933312.1 CDS rpsD NC_010741.1 324050 324664 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 324050..324664 Treponema pallidum subsp. pallidum SS14 6333490 YP_001933313.1 CDS TPASS_0307 NC_010741.1 324751 325779 D hypothetical protein 324751..325779 Treponema pallidum subsp. pallidum SS14 6332982 YP_001933314.1 CDS hisJ NC_010741.1 325754 326719 D amino acid ABC transporter, periplasmic binding protein 325754..326719 Treponema pallidum subsp. pallidum SS14 6332985 YP_001933315.1 CDS TPASS_0309 NC_010741.1 326785 327603 D amino acid ABC transporter, periplasmic binding protein 326785..327603 Treponema pallidum subsp. pallidum SS14 6333486 YP_001933316.1 CDS TPASS_0310 NC_010741.1 327572 327955 D hypothetical protein 327572..327955 Treponema pallidum subsp. pallidum SS14 6332983 YP_001933317.1 CDS TPASS_0311 NC_010741.1 327934 328077 R hypothetical protein complement(327934..328077) Treponema pallidum subsp. pallidum SS14 6332984 YP_001933318.1 CDS TPASS_0312 NC_010741.1 328061 329074 D hypothetical protein 328061..329074 Treponema pallidum subsp. pallidum SS14 6333485 YP_001933319.1 CDS tprE NC_010741.1 329165 331453 D protein TprE 329165..331453 Treponema pallidum subsp. pallidum SS14 6333483 YP_001933320.1 CDS TPASS_0314 NC_010741.1 331510 331656 R hypothetical protein complement(331510..331656) Treponema pallidum subsp. pallidum SS14 6333484 YP_001933321.1 CDS TPASS_0315 NC_010741.1 331679 332326 R hypothetical protein complement(331679..332326) Treponema pallidum subsp. pallidum SS14 6333480 YP_001933322.1 CDS tprG NC_010741.1 333573 335843 R protein TprG complement(333573..335843) Treponema pallidum subsp. pallidum SS14 6332981 YP_001933323.1 CDS TPASS_0318 NC_010741.1 335795 335974 R hypothetical protein complement(335795..335974) Treponema pallidum subsp. pallidum SS14 6333478 YP_001933324.1 CDS tmpC NC_010741.1 336003 337064 D membrane lipoprotein TmpC 336003..337064 Treponema pallidum subsp. pallidum SS14 6332978 YP_001933325.1 CDS TPASS_0320 NC_010741.1 337074 337229 D hypothetical protein 337074..337229 Treponema pallidum subsp. pallidum SS14 6333479 YP_001933326.1 CDS rbsA2 NC_010741.1 337305 338906 D ribose/galactose ABC transporter, ATP-binding protein 337305..338906 Treponema pallidum subsp. pallidum SS14 6332977 YP_001933327.1 CDS rbsC1 NC_010741.1 338816 340018 D ribose/galactose ABC transporter, permease protein 338816..340018 Treponema pallidum subsp. pallidum SS14 6332979 YP_001933328.1 CDS rbsC2 NC_010741.1 340015 340965 D ribose/galactose ABC transporter, permease protein 340015..340965 Treponema pallidum subsp. pallidum SS14 6333474 YP_001933329.1 CDS TPASS_0324 NC_010741.1 341069 342526 D hypothetical protein 341069..342526 Treponema pallidum subsp. pallidum SS14 6332976 YP_001933330.1 CDS TPASS_0325 NC_010741.1 342508 345474 D hypothetical protein 342508..345474 Treponema pallidum subsp. pallidum SS14 6333473 YP_001933331.1 CDS TPASS_0326 NC_010741.1 345456 348017 D outer membrane protein 345456..348017 Treponema pallidum subsp. pallidum SS14 6333472 YP_001933332.1 CDS ompH NC_010741.1 348074 348592 D cationic outer membrane protein 348074..348592 Treponema pallidum subsp. pallidum SS14 6332974 YP_001933333.1 CDS mutS NC_010741.1 348648 351350 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 348648..351350 Treponema pallidum subsp. pallidum SS14 6332975 YP_001933334.1 CDS glyA NC_010741.1 351468 353192 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 351468..353192 Treponema pallidum subsp. pallidum SS14 6332973 YP_001933335.1 CDS TPASS_0330 NC_010741.1 353166 354962 R cell division protein complement(353166..354962) Treponema pallidum subsp. pallidum SS14 6333467 YP_001933336.1 CDS gnd NC_010741.1 355192 356658 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(355192..356658) Treponema pallidum subsp. pallidum SS14 6333465 YP_001933337.1 CDS TPASS_0332 NC_010741.1 356674 356799 D hypothetical protein 356674..356799 Treponema pallidum subsp. pallidum SS14 6333464 YP_001933338.1 CDS TPASS_0333 NC_010741.1 356837 357529 D hypothetical protein 356837..357529 Treponema pallidum subsp. pallidum SS14 6333459 YP_001933339.1 CDS TPASS_0334 NC_010741.1 357554 358771 D hypothetical protein 357554..358771 Treponema pallidum subsp. pallidum SS14 6332972 YP_001933340.1 CDS TPASS_0335 NC_010741.1 358768 359310 R hypothetical protein complement(358768..359310) Treponema pallidum subsp. pallidum SS14 6333460 YP_001933341.1 CDS TPASS_0336 NC_010741.1 359153 360853 D protein ComE 359153..360853 Treponema pallidum subsp. pallidum SS14 6333463 YP_001933342.1 CDS ksgA NC_010741.1 360834 361691 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 360834..361691 Treponema pallidum subsp. pallidum SS14 6332952 YP_001933343.1 CDS TPASS_0338 NC_010741.1 361709 362197 D hypothetical protein 361709..362197 Treponema pallidum subsp. pallidum SS14 6333456 YP_001933344.1 CDS TPASS_0339 NC_010741.1 362209 363204 D hypothetical protein 362209..363204 Treponema pallidum subsp. pallidum SS14 6333457 YP_001933345.1 CDS folC NC_010741.1 363190 364662 R folylpolyglutamate synthetase complement(363190..364662) Treponema pallidum subsp. pallidum SS14 6333454 YP_001933346.1 CDS murC NC_010741.1 364681 366126 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 364681..366126 Treponema pallidum subsp. pallidum SS14 6333455 YP_001933347.1 CDS cmk NC_010741.1 366247 366807 D catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 366247..366807 Treponema pallidum subsp. pallidum SS14 6333453 YP_001933348.1 CDS TPASS_0343 NC_010741.1 366801 367634 D A/G-specific adenine glycosylase 366801..367634 Treponema pallidum subsp. pallidum SS14 6333450 YP_001933349.1 CDS trcF NC_010741.1 367639 371061 R transcription-repair coupling factor complement(367639..371061) Treponema pallidum subsp. pallidum SS14 6332964 YP_001933350.1 CDS mraY NC_010741.1 371214 372305 D phospho-N-acetylmuramoyl-pentapeptide- transferase 371214..372305 Treponema pallidum subsp. pallidum SS14 6333452 YP_001933351.1 CDS TPASS_0346 NC_010741.1 372462 373163 D hypothetical protein 372462..373163 Treponema pallidum subsp. pallidum SS14 6333451 YP_001933352.1 CDS TPASS_0347 NC_010741.1 373132 373962 D hypothetical protein 373132..373962 Treponema pallidum subsp. pallidum SS14 6333445 YP_001933353.1 CDS TPASS_0348 NC_010741.1 373696 375105 R hypothetical protein complement(373696..375105) Treponema pallidum subsp. pallidum SS14 6332968 YP_001933354.1 CDS slyD NC_010741.1 375075 375605 R peptidyl-prolyl cis-trans isomerase, FKBP-type complement(375075..375605) Treponema pallidum subsp. pallidum SS14 6332967 YP_001933355.1 CDS proA NC_010741.1 375819 377105 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 375819..377105 Treponema pallidum subsp. pallidum SS14 6333448 YP_001933356.1 CDS proB NC_010741.1 377102 377992 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 377102..377992 Treponema pallidum subsp. pallidum SS14 6332966 YP_001933357.1 CDS TPASS_0352 NC_010741.1 378124 378381 D hypothetical protein 378124..378381 Treponema pallidum subsp. pallidum SS14 6332965 YP_001933358.1 CDS rnhA NC_010741.1 378378 378887 R ribonuclease H complement(378378..378887) Treponema pallidum subsp. pallidum SS14 6333444 YP_001933359.1 CDS tmk NC_010741.1 379150 379776 D thymidylate kinase 379150..379776 Treponema pallidum subsp. pallidum SS14 6333447 YP_001933360.1 CDS TPASS_0355 NC_010741.1 379743 380126 R hypothetical protein complement(379743..380126) Treponema pallidum subsp. pallidum SS14 6333442 YP_001933361.1 CDS TPASS_0356 NC_010741.1 380331 380648 D RNA-binding protein 380331..380648 Treponema pallidum subsp. pallidum SS14 6333441 YP_001933362.1 CDS birA NC_010741.1 380750 381490 D biotin--acetyl-CoA-carboxylase ligase 380750..381490 Treponema pallidum subsp. pallidum SS14 6332963 YP_001933363.1 CDS TPASS_0358 NC_010741.1 381495 383075 R hypothetical protein complement(381495..383075) Treponema pallidum subsp. pallidum SS14 6333387 YP_001933364.1 CDS TPASS_0359 NC_010741.1 383087 383722 R hypothetical protein complement(383087..383722) Treponema pallidum subsp. pallidum SS14 6332938 YP_001933365.1 CDS TPASS_0360 NC_010741.1 383933 384109 D hypothetical protein 383933..384109 Treponema pallidum subsp. pallidum SS14 6333443 YP_001933366.1 CDS TPASS_0361 NC_010741.1 384106 384954 R lysophosphatidic acid acyltransferase complement(384106..384954) Treponema pallidum subsp. pallidum SS14 6333439 YP_001933367.1 CDS rpmB NC_010741.1 385030 385266 D required for 70S ribosome assembly; 50S ribosomal protein L28 385030..385266 Treponema pallidum subsp. pallidum SS14 6333386 YP_001933368.1 CDS cheA NC_010741.1 385758 388196 D chemotaxis histidine kinase 385758..388196 Treponema pallidum subsp. pallidum SS14 6333440 YP_001933369.1 CDS cheW1 NC_010741.1 388190 389557 D purine-binding chemotaxis protein 388190..389557 Treponema pallidum subsp. pallidum SS14 6333436 YP_001933370.1 CDS cheX NC_010741.1 389579 390043 D chemotaxis protein 389579..390043 Treponema pallidum subsp. pallidum SS14 6333427 YP_001933371.1 CDS cheY NC_010741.1 390056 390490 D chemotaxis response regulator 390056..390490 Treponema pallidum subsp. pallidum SS14 6333437 YP_001933372.1 CDS TPASS_0367 NC_010741.1 390794 393619 D chromosome segregation protein 390794..393619 Treponema pallidum subsp. pallidum SS14 6333433 YP_001933373.1 CDS TPASS_0368 NC_010741.1 393619 393954 D hypothetical protein 393619..393954 Treponema pallidum subsp. pallidum SS14 6333432 YP_001933374.1 CDS TPASS_0369 NC_010741.1 393951 395501 D hypothetical protein 393951..395501 Treponema pallidum subsp. pallidum SS14 6332954 YP_001933375.1 CDS TPASS_0370 NC_010741.1 395569 395985 R hypothetical protein complement(395569..395985) Treponema pallidum subsp. pallidum SS14 6332958 YP_001933376.1 CDS TPASS_0371 NC_010741.1 395959 396834 D hypothetical protein 395959..396834 Treponema pallidum subsp. pallidum SS14 6333425 YP_001933377.1 CDS ctc NC_010741.1 396956 397546 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 396956..397546 Treponema pallidum subsp. pallidum SS14 6333415 YP_001933378.1 CDS TPASS_0373 NC_010741.1 397606 399039 D hypothetical protein 397606..399039 Treponema pallidum subsp. pallidum SS14 6332951 YP_001933379.1 CDS TPASS_0374 NC_010741.1 398975 401350 D hypothetical protein 398975..401350 Treponema pallidum subsp. pallidum SS14 6333405 YP_001933380.1 CDS TPASS_0375 NC_010741.1 401508 401717 D hypothetical protein 401508..401717 Treponema pallidum subsp. pallidum SS14 6332945 YP_001933381.1 CDS TPASS_0376 NC_010741.1 402033 402938 R hypothetical protein complement(402033..402938) Treponema pallidum subsp. pallidum SS14 6332948 YP_001933382.1 CDS TPASS_0377 NC_010741.1 403007 403132 D hypothetical protein 403007..403132 Treponema pallidum subsp. pallidum SS14 6333403 YP_001933383.1 CDS TPASS_0378 NC_010741.1 403129 403509 D flagellar protein 403129..403509 Treponema pallidum subsp. pallidum SS14 6333399 YP_001933384.1 CDS secA NC_010741.1 403584 406334 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(403584..406334) Treponema pallidum subsp. pallidum SS14 6333400 YP_001933385.1 CDS TPASS_0380 NC_010741.1 406441 408261 R DNA repair helicase complement(406441..408261) Treponema pallidum subsp. pallidum SS14 6333398 YP_001933386.1 CDS TPASS_0381 NC_010741.1 408399 409115 R hypothetical protein complement(408399..409115) Treponema pallidum subsp. pallidum SS14 6333396 YP_001933387.1 CDS TPASS_0382 NC_010741.1 409199 409321 D hypothetical protein 409199..409321 Treponema pallidum subsp. pallidum SS14 6333393 YP_001933388.1 CDS TPASS_0383 NC_010741.1 409349 409798 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 409349..409798 Treponema pallidum subsp. pallidum SS14 6332942 YP_001933389.1 CDS TPASS_0384 NC_010741.1 409795 410934 D hypothetical protein 409795..410934 Treponema pallidum subsp. pallidum SS14 6333390 YP_001933390.1 CDS TPASS_0385 NC_010741.1 410947 411321 D hypothetical protein 410947..411321 Treponema pallidum subsp. pallidum SS14 6332927 YP_001933391.1 CDS murF NC_010741.1 411305 412684 D UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine 411305..412684 Treponema pallidum subsp. pallidum SS14 6333392 YP_001933392.1 CDS ftsW NC_010741.1 412681 413835 D cell division protein 412681..413835 Treponema pallidum subsp. pallidum SS14 6333389 YP_001933393.1 CDS ftsQ NC_010741.1 413813 414628 D cell division protein 413813..414628 Treponema pallidum subsp. pallidum SS14 6332931 YP_001933394.1 CDS ftsA NC_010741.1 414641 415885 D cell division protein 414641..415885 Treponema pallidum subsp. pallidum SS14 6332930 YP_001933395.1 CDS ftsZ NC_010741.1 415931 417187 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 415931..417187 Treponema pallidum subsp. pallidum SS14 6332932 YP_001933396.1 CDS codV NC_010741.1 417184 418104 D integrase/recombinase 417184..418104 Treponema pallidum subsp. pallidum SS14 6333376 YP_001933397.1 CDS TPASS_0392 NC_010741.1 417887 418846 D hypothetical protein 417887..418846 Treponema pallidum subsp. pallidum SS14 6333379 YP_001933398.1 CDS smf NC_010741.1 418843 419751 D protein Smf 418843..419751 Treponema pallidum subsp. pallidum SS14 6333377 YP_001933399.1 CDS topA NC_010741.1 419784 421979 D DNA topoisomerase I 419784..421979 Treponema pallidum subsp. pallidum SS14 6333446 YP_001933400.1 CDS xprB NC_010741.1 421972 422865 D integrase/recombinase 421972..422865 Treponema pallidum subsp. pallidum SS14 6333461 YP_001933401.1 CDS flgB NC_010741.1 423013 423423 D flagellar basal-body rod protein 423013..423423 Treponema pallidum subsp. pallidum SS14 6333381 YP_001933402.1 CDS flgC NC_010741.1 423508 423897 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 423508..423897 Treponema pallidum subsp. pallidum SS14 6333458 YP_001933403.1 CDS fliE NC_010741.1 423953 424327 D forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 423953..424327 Treponema pallidum subsp. pallidum SS14 6333475 YP_001933404.1 CDS fliF NC_010741.1 424444 426147 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 424444..426147 Treponema pallidum subsp. pallidum SS14 6333470 YP_001933405.1 CDS fliG NC_010741.1 426152 427210 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 426152..427210 Treponema pallidum subsp. pallidum SS14 6333477 YP_001933406.1 CDS fliH NC_010741.1 427258 428187 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 427258..428187 Treponema pallidum subsp. pallidum SS14 6332980 YP_001933407.1 CDS fliI NC_010741.1 428215 429558 D flagellum-specific ATP synthase 428215..429558 Treponema pallidum subsp. pallidum SS14 6333494 YP_001933408.1 CDS TPASS_0403 NC_010741.1 429587 430039 D flagellar protein 429587..430039 Treponema pallidum subsp. pallidum SS14 6333487 YP_001933409.1 CDS TPASS_0404 NC_010741.1 430036 430569 R hypothetical protein complement(430036..430569) Treponema pallidum subsp. pallidum SS14 6333523 YP_001933410.1 CDS TPASS_0405 NC_010741.1 430566 431015 R protein McbG complement(430566..431015) Treponema pallidum subsp. pallidum SS14 6333540 YP_001933411.1 CDS murI NC_010741.1 431206 432012 D glutamate racemase 431206..432012 Treponema pallidum subsp. pallidum SS14 6332997 YP_001933412.1 CDS gph1 NC_010741.1 432140 432814 D phosphoglycolate phosphatase 432140..432814 Treponema pallidum subsp. pallidum SS14 6333010 YP_001933413.1 CDS TPASS_0408 NC_010741.1 432893 436147 D hypothetical protein 432893..436147 Treponema pallidum subsp. pallidum SS14 6333557 YP_001933414.1 CDS TPASS_0409 NC_010741.1 436187 436372 D hypothetical protein 436187..436372 Treponema pallidum subsp. pallidum SS14 6333542 YP_001933415.1 CDS secD NC_010741.1 436637 438388 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 436637..438388 Treponema pallidum subsp. pallidum SS14 6333563 YP_001933416.1 CDS secF NC_010741.1 438385 439647 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 438385..439647 Treponema pallidum subsp. pallidum SS14 6333614 YP_001933417.1 CDS TPASS_0412 NC_010741.1 439723 440028 R hypothetical protein complement(439723..440028) Treponema pallidum subsp. pallidum SS14 6332827 YP_001933418.1 CDS TPASS_0413 NC_010741.1 440047 441945 R phosphoglucomutase complement(440047..441945) Treponema pallidum subsp. pallidum SS14 6333618 YP_001933419.1 CDS dagA NC_010741.1 442048 443403 D D-alanine glycine permease 442048..443403 Treponema pallidum subsp. pallidum SS14 6333050 YP_001933420.1 CDS TPASS_0415 NC_010741.1 443384 443917 D hypothetical protein 443384..443917 Treponema pallidum subsp. pallidum SS14 6333643 YP_001933421.1 CDS ffh NC_010741.1 443864 445222 R signal recognition particle protein complement(443864..445222) Treponema pallidum subsp. pallidum SS14 6333624 YP_001933422.1 CDS lnt NC_010741.1 445215 446894 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(445215..446894) Treponema pallidum subsp. pallidum SS14 6333053 YP_001933423.1 CDS TPASS_0418 NC_010741.1 446921 448114 D galactokinase 446921..448114 Treponema pallidum subsp. pallidum SS14 6333658 YP_001933424.1 CDS TPASS_0419 NC_010741.1 448111 448674 D survival protein 448111..448674 Treponema pallidum subsp. pallidum SS14 6332837 YP_001933425.1 CDS TPASS_0420 NC_010741.1 448655 448882 D hypothetical protein 448655..448882 Treponema pallidum subsp. pallidum SS14 6333654 YP_001933426.1 CDS TPASS_0421 NC_010741.1 449016 451067 D hypothetical protein 449016..451067 Treponema pallidum subsp. pallidum SS14 6333062 YP_001933427.1 CDS TPASS_0422 NC_010741.1 451051 452076 D hypothetical protein 451051..452076 Treponema pallidum subsp. pallidum SS14 6333057 YP_001933428.1 CDS TPASS_0423 NC_010741.1 452101 452907 D hypothetical protein 452101..452907 Treponema pallidum subsp. pallidum SS14 6333060 YP_001933429.1 CDS TPASS_0424 NC_010741.1 453110 453808 D produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E 453110..453808 Treponema pallidum subsp. pallidum SS14 6333044 YP_001933430.1 CDS TPASS_0425 NC_010741.1 453786 454046 D hypothetical protein 453786..454046 Treponema pallidum subsp. pallidum SS14 6333623 YP_001933431.1 CDS atpA1 NC_010741.1 454188 455957 D produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 454188..455957 Treponema pallidum subsp. pallidum SS14 6333056 YP_001933432.1 CDS atpB1 NC_010741.1 455961 457253 D produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 455961..457253 Treponema pallidum subsp. pallidum SS14 6333622 YP_001933433.1 CDS atpD1 NC_010741.1 457265 457885 D produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 457265..457885 Treponema pallidum subsp. pallidum SS14 6333605 YP_001933434.1 CDS atpI1 NC_010741.1 457882 459750 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 457882..459750 Treponema pallidum subsp. pallidum SS14 6333608 YP_001933435.1 CDS atpK1 NC_010741.1 459787 460209 D produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 459787..460209 Treponema pallidum subsp. pallidum SS14 6333599 YP_001933436.1 CDS TPASS_0431 NC_010741.1 460243 461064 D hypothetical protein 460243..461064 Treponema pallidum subsp. pallidum SS14 6333579 YP_001933437.1 CDS TPASS_0432 NC_010741.1 461107 461658 D hypothetical protein 461107..461658 Treponema pallidum subsp. pallidum SS14 6333022 YP_001933438.1 CDS arp NC_010741.1 461713 463527 D acidic repeat protein 461713..463527 Treponema pallidum subsp. pallidum SS14 6333577 YP_001933439.1 CDS tpp17 NC_010741.1 463624 464094 R lipoprotein, 17 kDa complement(463624..464094) Treponema pallidum subsp. pallidum SS14 6333547 YP_001933440.1 CDS TPASS_0436 NC_010741.1 464225 465307 R hypothetical protein complement(464225..465307) Treponema pallidum subsp. pallidum SS14 6333546 YP_001933441.1 CDS TPASS_0437 NC_010741.1 465273 465803 R hypothetical protein complement(465273..465803) Treponema pallidum subsp. pallidum SS14 6333558 YP_001933442.1 CDS TPASS_0438 NC_010741.1 465833 466642 D hypothetical protein 465833..466642 Treponema pallidum subsp. pallidum SS14 6333091 YP_001933443.1 CDS cheW2 NC_010741.1 466729 467241 D purine-binding chemotaxis protein 466729..467241 Treponema pallidum subsp. pallidum SS14 6333740 YP_001933444.1 CDS TPASS_0440 NC_010741.1 467331 468482 D spore coat polysaccharide biosynthesis protein 467331..468482 Treponema pallidum subsp. pallidum SS14 6333356 YP_001933445.1 CDS TPASS_0441 NC_010741.1 468479 469396 D hypothetical protein 468479..469396 Treponema pallidum subsp. pallidum SS14 6333698 YP_001933446.1 CDS recN NC_010741.1 469389 471110 D DNA repair protein 469389..471110 Treponema pallidum subsp. pallidum SS14 6333699 YP_001933447.1 CDS TPASS_0443 NC_010741.1 471052 471906 D hypothetical protein 471052..471906 Treponema pallidum subsp. pallidum SS14 6333088 YP_001933448.1 CDS TPASS_0444 NC_010741.1 471912 472940 D hypothetical protein 471912..472940 Treponema pallidum subsp. pallidum SS14 6333752 YP_001933449.1 CDS thiJ NC_010741.1 473076 473705 D 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme 473076..473705 Treponema pallidum subsp. pallidum SS14 6333704 YP_001933450.1 CDS gcpE NC_010741.1 473747 474961 D 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 473747..474961 Treponema pallidum subsp. pallidum SS14 6333696 YP_001933451.1 CDS TPASS_0447 NC_010741.1 474958 476082 D hypothetical protein 474958..476082 Treponema pallidum subsp. pallidum SS14 6333695 YP_001933452.1 CDS TPASS_0448 NC_010741.1 476140 477222 D uracil phosphoribosyltransferase 476140..477222 Treponema pallidum subsp. pallidum SS14 6333087 YP_001933453.1 CDS TPASS_0449 NC_010741.1 477226 477816 D hypothetical protein 477226..477816 Treponema pallidum subsp. pallidum SS14 6333086 YP_001933454.1 CDS fusA1 NC_010741.1 477953 480004 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 477953..480004 Treponema pallidum subsp. pallidum SS14 6333694 YP_001933455.1 CDS TPASS_0451 NC_010741.1 479993 480175 R hypothetical protein complement(479993..480175) Treponema pallidum subsp. pallidum SS14 6333692 YP_001933456.1 CDS ileS NC_010741.1 480454 483729 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 480454..483729 Treponema pallidum subsp. pallidum SS14 6333693 YP_001933457.1 CDS TPASS_0453 NC_010741.1 483716 484579 D hypothetical protein 483716..484579 Treponema pallidum subsp. pallidum SS14 6333093 YP_001933458.1 CDS TPASS_0454 NC_010741.1 484929 485618 R hypothetical protein complement(484929..485618) Treponema pallidum subsp. pallidum SS14 6332846 YP_001933459.1 CDS TPASS_0455 NC_010741.1 485615 486619 R hypothetical protein complement(485615..486619) Treponema pallidum subsp. pallidum SS14 6333085 YP_001933460.1 CDS TPASS_0456 NC_010741.1 486676 487992 R hypothetical protein complement(486676..487992) Treponema pallidum subsp. pallidum SS14 6333691 YP_001933461.1 CDS TPASS_0457 NC_010741.1 488060 489841 D hypothetical protein 488060..489841 Treponema pallidum subsp. pallidum SS14 6333690 YP_001933462.1 CDS TPASS_0458 NC_010741.1 489932 490510 D hypothetical protein 489932..490510 Treponema pallidum subsp. pallidum SS14 6333084 YP_001933463.1 CDS TPASS_0459 NC_010741.1 490539 491324 D hypothetical protein 490539..491324 Treponema pallidum subsp. pallidum SS14 6333689 YP_001933464.1 CDS TPASS_0460 NC_010741.1 491367 492074 D hypothetical protein 491367..492074 Treponema pallidum subsp. pallidum SS14 6333688 YP_001933465.1 CDS TPASS_0461 NC_010741.1 492075 492434 D hypothetical protein 492075..492434 Treponema pallidum subsp. pallidum SS14 6333083 YP_001933466.1 CDS TPASS_0462 NC_010741.1 492639 493481 D hypothetical protein 492639..493481 Treponema pallidum subsp. pallidum SS14 6332845 YP_001933467.1 CDS TPASS_0463 NC_010741.1 493486 493818 D hypothetical protein 493486..493818 Treponema pallidum subsp. pallidum SS14 6333687 YP_001933468.1 CDS TPASS_0464 NC_010741.1 493877 494629 R hypothetical protein complement(493877..494629) Treponema pallidum subsp. pallidum SS14 6333686 YP_001933469.1 CDS TPASS_0465 NC_010741.1 494626 495498 R hypothetical protein complement(494626..495498) Treponema pallidum subsp. pallidum SS14 6333082 YP_001933470.1 CDS TPASS_0466 NC_010741.1 495431 496600 R hypothetical protein complement(495431..496600) Treponema pallidum subsp. pallidum SS14 6332844 YP_001933471.1 CDS TPASS_0467 NC_010741.1 496591 496839 D hypothetical protein 496591..496839 Treponema pallidum subsp. pallidum SS14 6333685 YP_001933472.1 CDS TPASS_0468 NC_010741.1 496809 498761 R hypothetical protein complement(496809..498761) Treponema pallidum subsp. pallidum SS14 6333027 YP_001933473.1 CDS TPASS_0470 NC_010741.1 498754 499695 R hypothetical protein complement(498754..499695) Treponema pallidum subsp. pallidum SS14 6333673 YP_001933474.1 CDS TPASS_0471 NC_010741.1 499687 501096 D hypothetical protein 499687..501096 Treponema pallidum subsp. pallidum SS14 6333682 YP_001933475.1 CDS uvrC NC_010741.1 501109 503184 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(501109..503184) Treponema pallidum subsp. pallidum SS14 6333081 YP_001933476.1 CDS TPASS_0473 NC_010741.1 503259 503903 R hypothetical protein complement(503259..503903) Treponema pallidum subsp. pallidum SS14 6333080 YP_001933477.1 CDS TPASS_0474 NC_010741.1 503968 504705 R hypothetical protein complement(503968..504705) Treponema pallidum subsp. pallidum SS14 6333683 YP_001933478.1 CDS pgi NC_010741.1 504846 506453 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(504846..506453) Treponema pallidum subsp. pallidum SS14 6333079 YP_001933479.1 CDS ack NC_010741.1 506517 507863 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(506517..507863) Treponema pallidum subsp. pallidum SS14 6333364 YP_001933480.1 CDS TPASS_0477 NC_010741.1 507930 508655 R glucose-6-phosphate 1-dehydrogenase complement(507930..508655) Treponema pallidum subsp. pallidum SS14 6333681 YP_001933481.1 CDS zwf NC_010741.1 508716 510263 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(508716..510263) Treponema pallidum subsp. pallidum SS14 6333679 YP_001933482.1 CDS TPASS_0479 NC_010741.1 510336 511010 R hypothetical protein complement(510336..511010) Treponema pallidum subsp. pallidum SS14 6333680 YP_001933483.1 CDS TPASS_0480 NC_010741.1 511122 511610 D hypothetical protein 511122..511610 Treponema pallidum subsp. pallidum SS14 6333078 YP_001933484.1 CDS TPASS_0481 NC_010741.1 511642 513075 D hypothetical protein 511642..513075 Treponema pallidum subsp. pallidum SS14 6333106 YP_001933485.1 CDS TPASS_0482 NC_010741.1 513042 513890 D hypothetical protein 513042..513890 Treponema pallidum subsp. pallidum SS14 6333677 YP_001933486.1 CDS TPASS_0483 NC_010741.1 513956 515080 R fibronectin-binding protein complement(513956..515080) Treponema pallidum subsp. pallidum SS14 6333706 YP_001933487.1 CDS TPASS_0484 NC_010741.1 515067 517082 R hypothetical protein complement(515067..517082) Treponema pallidum subsp. pallidum SS14 6333678 YP_001933488.1 CDS TPASS_0485 NC_010741.1 516976 518820 R adenylate cyclase complement(516976..518820) Treponema pallidum subsp. pallidum SS14 6332842 YP_001933489.1 CDS TPASS_0486 NC_010741.1 518817 520412 R antigen, p83/100 complement(518817..520412) Treponema pallidum subsp. pallidum SS14 6333076 YP_001933490.1 CDS TPASS_0487 NC_010741.1 520501 522078 R hypothetical protein complement(520501..522078) Treponema pallidum subsp. pallidum SS14 6333676 YP_001933491.1 CDS mcp2 NC_010741.1 522306 524843 D methyl-accepting chemotaxis protein 522306..524843 Treponema pallidum subsp. pallidum SS14 6333075 YP_001933492.1 CDS TPASS_0489 NC_010741.1 525291 526259 D hypothetical protein 525291..526259 Treponema pallidum subsp. pallidum SS14 6333074 YP_001933493.1 CDS TPASS_0490 NC_010741.1 526256 526444 D hypothetical protein 526256..526444 Treponema pallidum subsp. pallidum SS14 6333758 YP_001933494.1 CDS TPASS_0491 NC_010741.1 526451 527485 D hypothetical protein 526451..527485 Treponema pallidum subsp. pallidum SS14 6333714 YP_001933495.1 CDS dnaG NC_010741.1 527509 529326 D DNA primase 527509..529326 Treponema pallidum subsp. pallidum SS14 6332840 YP_001933496.1 CDS rpoD NC_010741.1 529323 531158 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 529323..531158 Treponema pallidum subsp. pallidum SS14 6333097 YP_001933497.1 CDS TPASS_0494 NC_010741.1 531168 531989 D hypothetical protein 531168..531989 Treponema pallidum subsp. pallidum SS14 6332850 YP_001933498.1 CDS TPASS_0496 NC_010741.1 532319 533308 D hypothetical protein 532319..533308 Treponema pallidum subsp. pallidum SS14 6333713 YP_001933499.1 CDS mreB NC_010741.1 533321 534355 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 533321..534355 Treponema pallidum subsp. pallidum SS14 6333096 YP_001933500.1 CDS mreC NC_010741.1 534360 535223 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 534360..535223 Treponema pallidum subsp. pallidum SS14 6333095 YP_001933501.1 CDS mreD NC_010741.1 535220 535726 D rod shape-determining protein 535220..535726 Treponema pallidum subsp. pallidum SS14 6333711 YP_001933502.1 CDS pbp1 NC_010741.1 535727 537601 D penicillin-binding protein 535727..537601 Treponema pallidum subsp. pallidum SS14 6333710 YP_001933503.1 CDS rodA NC_010741.1 537598 538899 D rod shape-determining protein 537598..538899 Treponema pallidum subsp. pallidum SS14 6333712 YP_001933504.1 CDS TPASS_0502 NC_010741.1 538925 539821 D hypothetical protein 538925..539821 Treponema pallidum subsp. pallidum SS14 6333709 YP_001933505.1 CDS TPASS_0503 NC_010741.1 539800 540363 D hypothetical protein 539800..540363 Treponema pallidum subsp. pallidum SS14 6332849 YP_001933506.1 CDS TPASS_0504 NC_010741.1 540345 540485 D hypothetical protein 540345..540485 Treponema pallidum subsp. pallidum SS14 6333708 YP_001933507.1 CDS hxk NC_010741.1 540494 541828 R hexokinase complement(540494..541828) Treponema pallidum subsp. pallidum SS14 6333707 YP_001933508.1 CDS tig NC_010741.1 542563 543891 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 542563..543891 Treponema pallidum subsp. pallidum SS14 6333760 YP_001933509.1 CDS clpP NC_010741.1 543884 544495 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 543884..544495 Treponema pallidum subsp. pallidum SS14 6333715 YP_001933510.1 CDS clpX NC_010741.1 544482 545729 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 544482..545729 Treponema pallidum subsp. pallidum SS14 6333098 YP_001933511.1 CDS ahpC NC_010741.1 545826 546392 D alkyl hydroperoxide reductase 545826..546392 Treponema pallidum subsp. pallidum SS14 6332851 YP_001933512.1 CDS lepA NC_010741.1 546573 548390 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(546573..548390) Treponema pallidum subsp. pallidum SS14 6333071 YP_001933513.1 CDS carD NC_010741.1 548433 549059 D transcription factor 548433..549059 Treponema pallidum subsp. pallidum SS14 6333668 YP_001933514.1 CDS TPASS_0512 NC_010741.1 549056 550303 D hypothetical protein 549056..550303 Treponema pallidum subsp. pallidum SS14 6333669 YP_001933515.1 CDS trkA NC_010741.1 550377 551777 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 550377..551777 Treponema pallidum subsp. pallidum SS14 6333362 YP_001933516.1 CDS uvrA NC_010741.1 551891 554773 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 551891..554773 Treponema pallidum subsp. pallidum SS14 6333670 YP_001933517.1 CDS TPASS_0515 NC_010741.1 554770 557745 D hypothetical protein 554770..557745 Treponema pallidum subsp. pallidum SS14 6333671 YP_001933518.1 CDS mviN NC_010741.1 557759 559339 R virulence factor complement(557759..559339) Treponema pallidum subsp. pallidum SS14 6333729 YP_001933519.1 CDS ruvC NC_010741.1 559336 559926 R Holliday junction nuclease, subunit C complement(559336..559926) Treponema pallidum subsp. pallidum SS14 6332839 YP_001933520.1 CDS TPASS_0518 NC_010741.1 559908 560600 R hypothetical protein complement(559908..560600) Treponema pallidum subsp. pallidum SS14 6333730 YP_001933521.1 CDS atoC NC_010741.1 560597 561973 R response regulatory protein complement(560597..561973) Treponema pallidum subsp. pallidum SS14 6333724 YP_001933522.1 CDS TPASS_0521 NC_010741.1 563168 564439 R DNA polymerase III, gamma and tau subunits complement(563168..564439) Treponema pallidum subsp. pallidum SS14 6333726 YP_001933523.1 CDS TPASS_0522 NC_010741.1 564450 564929 R hypothetical protein complement(564450..564929) Treponema pallidum subsp. pallidum SS14 6332853 YP_001933524.1 CDS murG NC_010741.1 564926 566080 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(564926..566080) Treponema pallidum subsp. pallidum SS14 6333684 YP_001933525.1 CDS lon2 NC_010741.1 566084 568729 R ATP-dependent protease LA complement(566084..568729) Treponema pallidum subsp. pallidum SS14 6333104 YP_001933526.1 CDS efp NC_010741.1 568865 569428 D translation elongation factor P 568865..569428 Treponema pallidum subsp. pallidum SS14 6333725 YP_001933527.1 CDS hrpA NC_010741.1 569576 571582 D ATP-dependent helicase 569576..571582 Treponema pallidum subsp. pallidum SS14 6333101 YP_001933528.1 CDS atpD2 NC_010741.1 571630 572259 R V-type ATPase, subunit D complement(571630..572259) Treponema pallidum subsp. pallidum SS14 6333720 YP_001933529.1 CDS atpB2 NC_010741.1 572354 573796 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(572354..573796) Treponema pallidum subsp. pallidum SS14 6333723 YP_001933530.1 CDS atpA2 NC_010741.1 573793 575610 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(573793..575610) Treponema pallidum subsp. pallidum SS14 6333722 YP_001933531.1 CDS TPASS_0530 NC_010741.1 575607 576233 R V-type ATPase, subunit E complement(575607..576233) Treponema pallidum subsp. pallidum SS14 6332863 YP_001933532.1 CDS TPASS_0531 NC_010741.1 576239 576577 R V-type ATPase, subunit F complement(576239..576577) Treponema pallidum subsp. pallidum SS14 6333721 YP_001933533.1 CDS atpI2 NC_010741.1 577197 578561 R V-type ATPase, subunit I complement(577197..578561) Treponema pallidum subsp. pallidum SS14 6332848 YP_001933534.1 CDS TPASS_0534 NC_010741.1 578554 579579 R hypothetical protein complement(578554..579579) Treponema pallidum subsp. pallidum SS14 6333737 YP_001933535.1 CDS TPASS_0535 NC_010741.1 579583 579795 R hypothetical protein complement(579583..579795) Treponema pallidum subsp. pallidum SS14 6333736 YP_001933536.1 CDS secG NC_010741.1 579936 580337 R preprotein translocase subunit SecG complement(579936..580337) Treponema pallidum subsp. pallidum SS14 6333735 YP_001933537.1 CDS tpiA NC_010741.1 580487 581236 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(580487..581236) Treponema pallidum subsp. pallidum SS14 6333109 YP_001933538.1 CDS pgk NC_010741.1 581387 582646 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(581387..582646) Treponema pallidum subsp. pallidum SS14 6332857 YP_001933539.1 CDS TPASS_0539 NC_010741.1 582618 582839 D hypothetical protein 582618..582839 Treponema pallidum subsp. pallidum SS14 6333738 YP_001933540.1 CDS spoIIAA2 NC_010741.1 583120 583491 D anti-sigma F factor antagonist 583120..583491 Treponema pallidum subsp. pallidum SS14 6333114 YP_001933541.1 CDS era NC_010741.1 583621 584580 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 583621..584580 Treponema pallidum subsp. pallidum SS14 6333553 YP_001933542.1 CDS TPASS_0542 NC_010741.1 584577 586298 R catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase complement(584577..586298) Treponema pallidum subsp. pallidum SS14 6333733 YP_001933543.1 CDS ruvA NC_010741.1 586358 587041 R Holliday junction DNA helicase, subunit A complement(586358..587041) Treponema pallidum subsp. pallidum SS14 6333732 YP_001933544.1 CDS TPASS_0544 NC_010741.1 587083 588957 R hypothetical protein complement(587083..588957) Treponema pallidum subsp. pallidum SS14 6332856 YP_001933545.1 CDS mglB1 NC_010741.1 588982 590046 R methylgalactoside ABC transporter, periplasmic galactose-binding protein complement(588982..590046) Treponema pallidum subsp. pallidum SS14 6333734 YP_001933546.1 CDS TPASS_0546 NC_010741.1 590131 592131 R periplasmic serine protease complement(590131..592131) Treponema pallidum subsp. pallidum SS14 6333108 YP_001933547.1 CDS lytB NC_010741.1 591843 592973 R penicillin tolerance protein complement(591843..592973) Treponema pallidum subsp. pallidum SS14 6333105 YP_001933548.1 CDS TPASS_0548 NC_010741.1 593117 594433 D hypothetical protein 593117..594433 Treponema pallidum subsp. pallidum SS14 6333092 YP_001933549.1 CDS clpC NC_010741.1 594531 596975 D ATP-dependent Clp protease, subunit C 594531..596975 Treponema pallidum subsp. pallidum SS14 6333731 YP_001933550.1 CDS trmE NC_010741.1 597016 598503 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(597016..598503) Treponema pallidum subsp. pallidum SS14 6333727 YP_001933551.1 CDS TPASS_0551 NC_010741.1 598507 599595 R phosphatase complement(598507..599595) Treponema pallidum subsp. pallidum SS14 6333077 YP_001933552.1 CDS TPASS_0552 NC_010741.1 599608 600141 R hypothetical protein complement(599608..600141) Treponema pallidum subsp. pallidum SS14 6333728 YP_001933553.1 CDS TPASS_0553 NC_010741.1 600385 601596 D hypothetical protein 600385..601596 Treponema pallidum subsp. pallidum SS14 6332854 YP_001933554.1 CDS gph2 NC_010741.1 601631 602299 D phosphoglycolate phosphatase 601631..602299 Treponema pallidum subsp. pallidum SS14 6333697 YP_001933555.1 CDS TPASS_0555 NC_010741.1 602363 603553 R glutamate/aspartate transporter complement(602363..603553) Treponema pallidum subsp. pallidum SS14 6333753 YP_001933556.1 CDS asnA NC_010741.1 603776 604768 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(603776..604768) Treponema pallidum subsp. pallidum SS14 6333117 YP_001933557.1 CDS TPASS_0557 NC_010741.1 604873 605586 D hypothetical protein 604873..605586 Treponema pallidum subsp. pallidum SS14 6333748 YP_001933558.1 CDS TPASS_0558 NC_010741.1 605616 606524 D hypothetical protein 605616..606524 Treponema pallidum subsp. pallidum SS14 6333675 YP_001933559.1 CDS TPASS_0559 NC_010741.1 606586 607791 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 606586..607791 Treponema pallidum subsp. pallidum SS14 6333750 YP_001933560.1 CDS tktA NC_010741.1 607844 609829 R transketolase A complement(607844..609829) Treponema pallidum subsp. pallidum SS14 6333751 YP_001933561.1 CDS TPASS_0561 NC_010741.1 609940 610791 R hypothetical protein complement(609940..610791) Treponema pallidum subsp. pallidum SS14 6332860 YP_001933562.1 CDS spsE NC_010741.1 610962 612098 D spore coat polysaccharide biosynthesis protein 610962..612098 Treponema pallidum subsp. pallidum SS14 6333178 YP_001933563.1 CDS TPASS_0563 NC_010741.1 612089 612502 D hypothetical protein 612089..612502 Treponema pallidum subsp. pallidum SS14 6333116 YP_001933564.1 CDS TPASS_0564 NC_010741.1 612499 614535 D hypothetical protein 612499..614535 Treponema pallidum subsp. pallidum SS14 6332855 YP_001933565.1 CDS TPASS_0565 NC_010741.1 614417 615637 R hypothetical protein complement(614417..615637) Treponema pallidum subsp. pallidum SS14 6333702 YP_001933566.1 CDS algI NC_010741.1 615648 617135 R alginate O-acetylation protein complement(615648..617135) Treponema pallidum subsp. pallidum SS14 6333235 YP_001933567.1 CDS TPASS_0567 NC_010741.1 617167 617787 R hypothetical protein complement(617167..617787) Treponema pallidum subsp. pallidum SS14 6333260 YP_001933568.1 CDS eda NC_010741.1 617866 618498 R 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase complement(617866..618498) Treponema pallidum subsp. pallidum SS14 6333270 YP_001933569.1 CDS TPASS_0569 NC_010741.1 618620 620944 R aminopeptidase P complement(618620..620944) Treponema pallidum subsp. pallidum SS14 6333317 YP_001933570.1 CDS TPASS_0570 NC_010741.1 620969 621814 R hypothetical protein complement(620969..621814) Treponema pallidum subsp. pallidum SS14 6333861 YP_001933571.1 CDS TPASS_0571 NC_010741.1 621841 622506 R protein Tp70 complement(621841..622506) Treponema pallidum subsp. pallidum SS14 6333250 YP_001933572.1 CDS TPASS_0572 NC_010741.1 622524 623606 R hypothetical protein complement(622524..623606) Treponema pallidum subsp. pallidum SS14 6332874 YP_001933573.1 CDS TPASS_0573 NC_010741.1 623597 623689 D hypothetical protein 623597..623689 Treponema pallidum subsp. pallidum SS14 6333210 YP_001933574.1 CDS TPASS_0574 NC_010741.1 623716 625020 R carboxypeptidase, 47 kDa complement(623716..625020) Treponema pallidum subsp. pallidum SS14 6333739 YP_001933575.1 CDS prfB NC_010741.1 627252 628358 D peptide chain release factor 2 627252..628358 Treponema pallidum subsp. pallidum SS14 6333305 YP_001933576.1 CDS TPASS_0577 NC_010741.1 628250 630094 D hypothetical protein 628250..630094 Treponema pallidum subsp. pallidum SS14 6333327 YP_001933577.1 CDS ftsY NC_010741.1 630101 630988 D cell division protein 630101..630988 Treponema pallidum subsp. pallidum SS14 6332789 YP_001933578.1 CDS TPASS_0579 NC_010741.1 630985 631761 D hypothetical protein 630985..631761 Treponema pallidum subsp. pallidum SS14 6333325 YP_001933579.1 CDS TPASS_0580 NC_010741.1 631754 633043 D hypothetical protein 631754..633043 Treponema pallidum subsp. pallidum SS14 6333280 YP_001933580.1 CDS TPASS_0581 NC_010741.1 633036 633716 D ABC transporter, ATP-binding protein 633036..633716 Treponema pallidum subsp. pallidum SS14 6333295 YP_001933581.1 CDS TPASS_0582 NC_010741.1 633713 635200 D hypothetical protein 633713..635200 Treponema pallidum subsp. pallidum SS14 6333797 YP_001933582.1 CDS TPASS_0583 NC_010741.1 635184 635309 R hypothetical protein complement(635184..635309) Treponema pallidum subsp. pallidum SS14 6333238 YP_001933583.1 CDS TPASS_0584 NC_010741.1 635296 636705 D hypothetical protein 635296..636705 Treponema pallidum subsp. pallidum SS14 6332905 YP_001933584.1 CDS oppA NC_010741.1 636698 638341 D oligopeptide ABC transporter, periplasmic binding protein 636698..638341 Treponema pallidum subsp. pallidum SS14 6333151 YP_001933585.1 CDS leuS NC_010741.1 638430 641066 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 638430..641066 Treponema pallidum subsp. pallidum SS14 6333359 YP_001933586.1 CDS TPASS_0587 NC_010741.1 641046 641276 R hypothetical protein complement(641046..641276) Treponema pallidum subsp. pallidum SS14 6333112 YP_001933587.1 CDS TPASS_0588 NC_010741.1 641303 642067 R hypothetical protein complement(641303..642067) Treponema pallidum subsp. pallidum SS14 6333269 YP_001933588.1 CDS ptsH NC_010741.1 642155 642421 R phosphocarrier protein HPr complement(642155..642421) Treponema pallidum subsp. pallidum SS14 6333323 YP_001933589.1 CDS TPASS_0590 NC_010741.1 642393 642509 R hypothetical protein complement(642393..642509) Treponema pallidum subsp. pallidum SS14 6333322 YP_001933590.1 CDS ptsK NC_010741.1 642466 643425 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(642466..643425) Treponema pallidum subsp. pallidum SS14 6333315 YP_001933591.1 CDS TPASS_0592 NC_010741.1 644188 645690 D hypothetical protein 644188..645690 Treponema pallidum subsp. pallidum SS14 6332921 YP_001933592.1 CDS TPASS_0593 NC_010741.1 645627 647660 D hypothetical protein 645627..647660 Treponema pallidum subsp. pallidum SS14 6333318 YP_001933593.1 CDS TPASS_0594 NC_010741.1 647747 648355 R hypothetical protein complement(647747..648355) Treponema pallidum subsp. pallidum SS14 6333353 YP_001933594.1 CDS adk NC_010741.1 648383 649018 R adenylate kinase complement(648383..649018) Treponema pallidum subsp. pallidum SS14 6333349 YP_001933595.1 CDS pcnB NC_010741.1 649042 650154 R polynucleotide adenylyltransferase complement(649042..650154) Treponema pallidum subsp. pallidum SS14 6333332 YP_001933596.1 CDS TPASS_0598 NC_010741.1 650262 652325 R hypothetical protein complement(650262..652325) Treponema pallidum subsp. pallidum SS14 6333594 YP_001933597.1 CDS TPASS_0599 NC_010741.1 652362 653018 R hypothetical protein complement(652362..653018) Treponema pallidum subsp. pallidum SS14 6333138 YP_001933598.1 CDS TPASS_0600 NC_010741.1 653025 654377 R zinc protease complement(653025..654377) Treponema pallidum subsp. pallidum SS14 6333215 YP_001933599.1 CDS dxr NC_010741.1 654374 655525 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(654374..655525) Treponema pallidum subsp. pallidum SS14 6332920 YP_001933600.1 CDS cdsA NC_010741.1 655501 656364 R phosphatidate cytidylyltransferase complement(655501..656364) Treponema pallidum subsp. pallidum SS14 6333123 YP_001933601.1 CDS TPASS_0603 NC_010741.1 656361 657047 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(656361..657047) Treponema pallidum subsp. pallidum SS14 6333248 YP_001933602.1 CDS frr NC_010741.1 657053 657604 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(657053..657604) Treponema pallidum subsp. pallidum SS14 6333672 YP_001933603.1 CDS tsf NC_010741.1 657708 658580 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(657708..658580) Treponema pallidum subsp. pallidum SS14 6333251 YP_001933604.1 CDS rpsB NC_010741.1 658671 659546 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(658671..659546) Treponema pallidum subsp. pallidum SS14 6333308 YP_001933605.1 CDS TPASS_0607 NC_010741.1 659515 659661 R hypothetical protein complement(659515..659661) Treponema pallidum subsp. pallidum SS14 6333304 YP_001933606.1 CDS TPASS_0608 NC_010741.1 659911 660801 R hypothetical protein complement(659911..660801) Treponema pallidum subsp. pallidum SS14 6333867 YP_001933607.1 CDS asnC NC_010741.1 661119 662690 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 661119..662690 Treponema pallidum subsp. pallidum SS14 6333749 YP_001933608.1 CDS tprH NC_010741.1 662700 664781 D protein TprH 662700..664781 Treponema pallidum subsp. pallidum SS14 6333207 YP_001933609.1 CDS TPASS_0611 NC_010741.1 664923 665702 D ABC transporter, ATP-binding protein 664923..665702 Treponema pallidum subsp. pallidum SS14 6333703 YP_001933610.1 CDS TPASS_0612 NC_010741.1 665783 667222 D hypothetical protein 665783..667222 Treponema pallidum subsp. pallidum SS14 6333155 YP_001933611.1 CDS TPASS_0613 NC_010741.1 667249 668397 D hypothetical protein 667249..668397 Treponema pallidum subsp. pallidum SS14 6333336 YP_001933612.1 CDS nifS1 NC_010741.1 668394 669608 D nitrogen fixation protein 668394..669608 Treponema pallidum subsp. pallidum SS14 6333355 YP_001933613.1 CDS nifU NC_010741.1 669659 670102 D nitrogen fixation protein 669659..670102 Treponema pallidum subsp. pallidum SS14 6333228 YP_001933614.1 CDS rpiA NC_010741.1 670123 670887 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 670123..670887 Treponema pallidum subsp. pallidum SS14 6333276 YP_001933615.1 CDS TPASS_0617 NC_010741.1 670914 671192 R hypothetical protein complement(670914..671192) Treponema pallidum subsp. pallidum SS14 6333229 YP_001933616.1 CDS TPASS_0618 NC_010741.1 671288 671647 R hypothetical protein complement(671288..671647) Treponema pallidum subsp. pallidum SS14 6332796 YP_001933617.1 CDS TPASS_0619 NC_010741.1 671703 672515 R hypothetical protein complement(671703..672515) Treponema pallidum subsp. pallidum SS14 6333792 YP_001933618.1 CDS tprI NC_010741.1 672512 674341 R protein TprI complement(672512..674341) Treponema pallidum subsp. pallidum SS14 6333289 YP_001933619.1 CDS tprJ NC_010741.1 674399 676675 R protein TprJ complement(674399..676675) Treponema pallidum subsp. pallidum SS14 6332861 YP_001933620.1 CDS TPASS_0622 NC_010741.1 676735 678516 R hypothetical protein complement(676735..678516) Treponema pallidum subsp. pallidum SS14 6332909 YP_001933621.1 CDS dniR NC_010741.1 677933 680272 D membrane-bound lytic murein transglycosylase D 677933..680272 Treponema pallidum subsp. pallidum SS14 6333227 YP_001933622.1 CDS TPASS_0624 NC_010741.1 680276 681706 D hypothetical protein 680276..681706 Treponema pallidum subsp. pallidum SS14 6332843 YP_001933623.1 CDS TPASS_0625 NC_010741.1 681706 682458 D hypothetical protein 681706..682458 Treponema pallidum subsp. pallidum SS14 6333262 YP_001933624.1 CDS TPASS_0626 NC_010741.1 682455 683630 D exonuclease 682455..683630 Treponema pallidum subsp. pallidum SS14 6333320 YP_001933625.1 CDS sbcC NC_010741.1 683627 686770 D exonuclease 683627..686770 Treponema pallidum subsp. pallidum SS14 6333274 YP_001933626.1 CDS TPASS_0628 NC_010741.1 686767 688248 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 686767..688248 Treponema pallidum subsp. pallidum SS14 6333346 YP_001933627.1 CDS TPASS_0629 NC_010741.1 688419 689243 D hypothetical protein 688419..689243 Treponema pallidum subsp. pallidum SS14 6332914 YP_001933628.1 CDS cheR NC_010741.1 689413 690324 D chemotaxis protein methyltransferase 689413..690324 Treponema pallidum subsp. pallidum SS14 6333870 YP_001933629.1 CDS cheB NC_010741.1 690371 691582 D protein-glutamate methylesterase 690371..691582 Treponema pallidum subsp. pallidum SS14 6333186 YP_001933630.1 CDS trpS NC_010741.1 691687 692700 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 691687..692700 Treponema pallidum subsp. pallidum SS14 6333360 YP_001933631.1 CDS msrA NC_010741.1 692841 693716 D this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 692841..693716 Treponema pallidum subsp. pallidum SS14 6333103 YP_001933632.1 CDS lig NC_010741.1 693835 696306 D DNA ligase 693835..696306 Treponema pallidum subsp. pallidum SS14 6332895 YP_001933633.1 CDS TPASS_0636 NC_010741.1 696341 697111 R hypothetical protein complement(696341..697111) Treponema pallidum subsp. pallidum SS14 6332923 YP_001933634.1 CDS miaA NC_010741.1 697149 698099 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(697149..698099) Treponema pallidum subsp. pallidum SS14 6333310 YP_001933635.1 CDS TPASS_0638 NC_010741.1 698323 698757 R hypothetical protein complement(698323..698757) Treponema pallidum subsp. pallidum SS14 6333307 YP_001933636.1 CDS mcp3 NC_010741.1 699177 701141 D methyl-accepting chemotaxis protein 699177..701141 Treponema pallidum subsp. pallidum SS14 6332858 YP_001933637.1 CDS mcp4 NC_010741.1 701165 703009 D methyl-accepting chemotaxis protein 701165..703009 Treponema pallidum subsp. pallidum SS14 6333347 YP_001933638.1 CDS hisS NC_010741.1 703027 704355 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(703027..704355) Treponema pallidum subsp. pallidum SS14 6333701 YP_001933639.1 CDS manB NC_010741.1 704496 706256 D phosphomannomutase 704496..706256 Treponema pallidum subsp. pallidum SS14 6333354 YP_001933640.1 CDS dnaQ NC_010741.1 706253 706900 D DNA polymerase III, subunit epsilon 706253..706900 Treponema pallidum subsp. pallidum SS14 6333324 YP_001933641.1 CDS lysK NC_010741.1 706897 708483 R class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase complement(706897..708483) Treponema pallidum subsp. pallidum SS14 6333233 YP_001933642.1 CDS TPASS_0645 NC_010741.1 708514 708690 R hypothetical protein complement(708514..708690) Treponema pallidum subsp. pallidum SS14 6333236 YP_001933643.1 CDS TPASS_0646 NC_010741.1 708749 710071 R hypothetical protein complement(708749..710071) Treponema pallidum subsp. pallidum SS14 6332969 YP_001933644.1 CDS serS NC_010741.1 709983 711263 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(709983..711263) Treponema pallidum subsp. pallidum SS14 6333275 YP_001933645.1 CDS TPASS_0648 NC_010741.1 711313 713361 R hypothetical protein complement(711313..713361) Treponema pallidum subsp. pallidum SS14 6333773 YP_001933646.1 CDS tlyC NC_010741.1 713306 714103 R hemolysin complement(713306..714103) Treponema pallidum subsp. pallidum SS14 6332910 YP_001933647.1 CDS TPASS_0650 NC_010741.1 714091 714573 R metalloprotease complement(714091..714573) Treponema pallidum subsp. pallidum SS14 6333100 YP_001933648.1 CDS TPASS_0651 NC_010741.1 714579 716990 R hypothetical protein complement(714579..716990) Treponema pallidum subsp. pallidum SS14 6333776 YP_001933649.1 CDS potA NC_010741.1 717166 718305 D spermidine/putrescine ABC transporter, ATP-binding protein 717166..718305 Treponema pallidum subsp. pallidum SS14 6333277 YP_001933650.1 CDS potB NC_010741.1 718302 719201 D spermidine/putrescine ABC transporter, permease protein 718302..719201 Treponema pallidum subsp. pallidum SS14 6332924 YP_001933651.1 CDS potC NC_010741.1 719194 720012 D spermidine/putrescine ABC transporter, permease protein 719194..720012 Treponema pallidum subsp. pallidum SS14 6332790 YP_001933652.1 CDS potD NC_010741.1 720048 721094 D spermidine/putrescine ABC transporter, periplasmic binding protein 720048..721094 Treponema pallidum subsp. pallidum SS14 6333306 YP_001933653.1 CDS TPASS_0656 NC_010741.1 721063 721164 D hypothetical protein 721063..721164 Treponema pallidum subsp. pallidum SS14 6333247 YP_001933654.1 CDS csrA NC_010741.1 721149 721370 R carbon storage regulator complement(721149..721370) Treponema pallidum subsp. pallidum SS14 6333344 YP_001933655.1 CDS TPASS_0658 NC_010741.1 721364 721816 R binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW complement(721364..721816) Treponema pallidum subsp. pallidum SS14 6333208 YP_001933656.1 CDS flgL NC_010741.1 721835 723085 R With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL complement(721835..723085) Treponema pallidum subsp. pallidum SS14 6333249 YP_001933657.1 CDS flgK NC_010741.1 723119 724996 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(723119..724996) Treponema pallidum subsp. pallidum SS14 6333113 YP_001933658.1 CDS TPASS_0661 NC_010741.1 725102 725614 R hypothetical protein complement(725102..725614) Treponema pallidum subsp. pallidum SS14 6333816 YP_001933659.1 CDS cbbA NC_010741.1 725737 726735 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(725737..726735) Treponema pallidum subsp. pallidum SS14 6333841 YP_001933660.1 CDS TPASS_0663 NC_010741.1 727002 727730 D outer membrane protein 727002..727730 Treponema pallidum subsp. pallidum SS14 6332847 YP_001933661.1 CDS flaA2 NC_010741.1 727727 728452 D flagellar filament outer layer protein 727727..728452 Treponema pallidum subsp. pallidum SS14 6333339 YP_001933662.1 CDS TPASS_0665 NC_010741.1 728470 729225 R hypothetical protein complement(728470..729225) Treponema pallidum subsp. pallidum SS14 6333258 YP_001933663.1 CDS TPASS_0666 NC_010741.1 729222 729515 R hypothetical protein complement(729222..729515) Treponema pallidum subsp. pallidum SS14 6333321 YP_001933664.1 CDS udk NC_010741.1 729559 731226 R uridine kinase complement(729559..731226) Treponema pallidum subsp. pallidum SS14 6333272 YP_001933665.1 CDS TPASS_0668 NC_010741.1 731457 732059 R hypothetical protein complement(731457..732059) Treponema pallidum subsp. pallidum SS14 6333232 YP_001933666.1 CDS dnaE NC_010741.1 732056 735568 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(732056..735568) Treponema pallidum subsp. pallidum SS14 6332911 YP_001933667.1 CDS ddl NC_010741.1 735722 736912 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(735722..736912) Treponema pallidum subsp. pallidum SS14 6333185 YP_001933668.1 CDS TPASS_0671 NC_010741.1 736914 737948 R sn-1,2-diacylglycerol cholinephosphotransferase complement(736914..737948) Treponema pallidum subsp. pallidum SS14 6333361 YP_001933669.1 CDS glyS NC_010741.1 737979 739367 R Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase complement(737979..739367) Treponema pallidum subsp. pallidum SS14 6333266 YP_001933670.1 CDS gltX NC_010741.1 739502 741115 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(739502..741115) Treponema pallidum subsp. pallidum SS14 6333261 YP_001933671.1 CDS TPASS_0674 NC_010741.1 741293 741901 D hypothetical protein 741293..741901 Treponema pallidum subsp. pallidum SS14 6332788 YP_001933672.1 CDS TPASS_0675 NC_010741.1 741907 742905 D hypothetical protein 741907..742905 Treponema pallidum subsp. pallidum SS14 6333351 YP_001933673.1 CDS TPASS_0676 NC_010741.1 742917 743195 R hypothetical protein complement(742917..743195) Treponema pallidum subsp. pallidum SS14 6333667 YP_001933674.1 CDS TPASS_0677 NC_010741.1 743217 743825 R hypothetical protein complement(743217..743825) Treponema pallidum subsp. pallidum SS14 6333334 YP_001933675.1 CDS TPASS_0678 NC_010741.1 744079 745002 D hypothetical protein 744079..745002 Treponema pallidum subsp. pallidum SS14 6332908 YP_001933676.1 CDS TPASS_0679 NC_010741.1 744999 745316 D hypothetical protein 744999..745316 Treponema pallidum subsp. pallidum SS14 6333756 YP_001933677.1 CDS gcp NC_010741.1 745357 746415 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(745357..746415) Treponema pallidum subsp. pallidum SS14 6333316 YP_001933678.1 CDS alr NC_010741.1 746466 747599 R alanine racemase complement(746466..747599) Treponema pallidum subsp. pallidum SS14 6332919 YP_001933679.1 CDS ftsJ NC_010741.1 747628 748230 R cell division protein complement(747628..748230) Treponema pallidum subsp. pallidum SS14 6333345 YP_001933680.1 CDS TPASS_0683 NC_010741.1 748323 749417 D octaprenyl-diphosphate synthase 748323..749417 Treponema pallidum subsp. pallidum SS14 6333352 YP_001933681.1 CDS mglB2 NC_010741.1 749710 750921 D methylgalactoside ABC transporter, periplasmic galactose-binding protein 749710..750921 Treponema pallidum subsp. pallidum SS14 6333265 YP_001933682.1 CDS mglA NC_010741.1 751041 752531 D methylgalactoside ABC transporter, ATP binding protein 751041..752531 Treponema pallidum subsp. pallidum SS14 6333268 YP_001933683.1 CDS mglC NC_010741.1 752546 754141 D methylgalactoside ABC transporter, permease protein 752546..754141 Treponema pallidum subsp. pallidum SS14 6333828 YP_001933684.1 CDS recG NC_010741.1 754269 756329 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(754269..756329) Treponema pallidum subsp. pallidum SS14 6333798 YP_001933685.1 CDS mccF NC_010741.1 756385 757398 R immunity protein complement(756385..757398) Treponema pallidum subsp. pallidum SS14 6333221 YP_001933686.1 CDS engA NC_010741.1 757399 758781 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(757399..758781) Treponema pallidum subsp. pallidum SS14 6333222 YP_001933687.1 CDS TPASS_0690 NC_010741.1 758817 759398 R hypothetical protein complement(758817..759398) Treponema pallidum subsp. pallidum SS14 6333598 YP_001933688.1 CDS TPASS_0691 NC_010741.1 759391 760149 R hypothetical protein complement(759391..760149) Treponema pallidum subsp. pallidum SS14 6332917 YP_001933689.1 CDS recA NC_010741.1 760177 761400 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(760177..761400) Treponema pallidum subsp. pallidum SS14 6333588 YP_001933690.1 CDS TPASS_0693 NC_010741.1 761661 762983 R hypothetical protein complement(761661..762983) Treponema pallidum subsp. pallidum SS14 6332915 YP_001933691.1 CDS TPASS_0694 NC_010741.1 763143 763820 D 5,10-methenyltetrahydrofolate synthetase 763143..763820 Treponema pallidum subsp. pallidum SS14 6332918 YP_001933692.1 CDS TPASS_0695 NC_010741.1 763908 765701 D phosphoribosylglycinamide formyltransferase 763908..765701 Treponema pallidum subsp. pallidum SS14 6332916 YP_001933693.1 CDS TPASS_0696 NC_010741.1 765689 766525 R nicotinamidase complement(765689..766525) Treponema pallidum subsp. pallidum SS14 6333717 YP_001933694.1 CDS TPASS_0697 NC_010741.1 766587 767195 R hypothetical protein complement(766587..767195) Treponema pallidum subsp. pallidum SS14 6333705 YP_001933695.1 CDS TPASS_0698 NC_010741.1 767226 767771 R hypothetical protein complement(767226..767771) Treponema pallidum subsp. pallidum SS14 6333741 YP_001933696.1 CDS TPASS_0699 NC_010741.1 767768 767878 R hypothetical protein complement(767768..767878) Treponema pallidum subsp. pallidum SS14 6333718 YP_001933697.1 CDS TPASS_0700 NC_010741.1 767884 768276 R hypothetical protein complement(767884..768276) Treponema pallidum subsp. pallidum SS14 6333744 YP_001933698.1 CDS TPASS_0701 NC_010741.1 768414 768617 R DNA-directed RNA polymerase complement(768414..768617) Treponema pallidum subsp. pallidum SS14 6333743 YP_001933699.1 CDS TPASS_0702 NC_010741.1 768787 769323 R hypothetical protein complement(768787..769323) Treponema pallidum subsp. pallidum SS14 6333746 YP_001933700.1 CDS TPASS_0703 NC_010741.1 769338 770018 R hypothetical protein complement(769338..770018) Treponema pallidum subsp. pallidum SS14 6333224 YP_001933701.1 CDS recJ NC_010741.1 770018 772138 R single-stranded-DNA-specific exonuclease complement(770018..772138) Treponema pallidum subsp. pallidum SS14 6333067 YP_001933702.1 CDS pbp2 NC_010741.1 772281 774935 R penicillin-binding protein complement(772281..774935) Treponema pallidum subsp. pallidum SS14 6333660 YP_001933703.1 CDS TPASS_0706 NC_010741.1 775232 776158 R hypothetical protein complement(775232..776158) Treponema pallidum subsp. pallidum SS14 6333365 YP_001933704.1 CDS TPASS_0707 NC_010741.1 776220 776699 R hypothetical protein complement(776220..776699) Treponema pallidum subsp. pallidum SS14 6332904 YP_001933705.1 CDS TPASS_0708 NC_010741.1 776765 777280 D hypothetical protein 776765..777280 Treponema pallidum subsp. pallidum SS14 6333664 YP_001933706.1 CDS TPASS_0709 NC_010741.1 777336 778124 D involved in the initiation of sporulation and glycogen biosynthesis; RNA polymerase sigma factor WhiG 777336..778124 Treponema pallidum subsp. pallidum SS14 6333226 YP_001933707.1 CDS TPASS_0710 NC_010741.1 778133 780103 D hypothetical protein 778133..780103 Treponema pallidum subsp. pallidum SS14 6333662 YP_001933708.1 CDS TPASS_0711 NC_010741.1 780140 780712 D hypothetical protein 780140..780712 Treponema pallidum subsp. pallidum SS14 6333213 YP_001933709.1 CDS ylxH1 NC_010741.1 780727 781641 R ATP-binding protein complement(780727..781641) Treponema pallidum subsp. pallidum SS14 6333665 YP_001933710.1 CDS flhF NC_010741.1 781613 782926 R flagellar-associated GTP-binding protein complement(781613..782926) Treponema pallidum subsp. pallidum SS14 6333422 YP_001933711.1 CDS flhA NC_010741.1 782961 785084 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(782961..785084) Treponema pallidum subsp. pallidum SS14 6333068 YP_001933712.1 CDS flhB NC_010741.1 785093 786223 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(785093..786223) Treponema pallidum subsp. pallidum SS14 6333335 YP_001933713.1 CDS fliR NC_010741.1 786220 787017 R flagellar biosynthetic protein complement(786220..787017) Treponema pallidum subsp. pallidum SS14 6333860 YP_001933714.1 CDS fliQ NC_010741.1 787030 787314 R flagellar biosynthetic protein complement(787030..787314) Treponema pallidum subsp. pallidum SS14 6332838 YP_001933715.1 CDS fliP NC_010741.1 787333 788148 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(787333..788148) Treponema pallidum subsp. pallidum SS14 6333858 YP_001933716.1 CDS TPASS_0719 NC_010741.1 788145 788933 R hypothetical protein complement(788145..788933) Treponema pallidum subsp. pallidum SS14 6333069 YP_001933717.1 CDS fliY NC_010741.1 788869 789915 R flagellar motor switch protein complement(788869..789915) Treponema pallidum subsp. pallidum SS14 6333874 YP_001933718.1 CDS fliM NC_010741.1 789908 790942 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(789908..790942) Treponema pallidum subsp. pallidum SS14 6332793 YP_001933719.1 CDS fliL NC_010741.1 790964 791512 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(790964..791512) Treponema pallidum subsp. pallidum SS14 6333212 YP_001933720.1 CDS TPASS_0723 NC_010741.1 791491 791625 R hypothetical protein complement(791491..791625) Treponema pallidum subsp. pallidum SS14 6333254 YP_001933721.1 CDS motB NC_010741.1 791622 792338 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(791622..792338) Treponema pallidum subsp. pallidum SS14 6333856 YP_001933722.1 CDS motA NC_010741.1 792344 793123 R flagellar motor rotation protein complement(792344..793123) Treponema pallidum subsp. pallidum SS14 6333476 YP_001933723.1 CDS flbD NC_010741.1 793139 793336 R flagellar protein complement(793139..793336) Treponema pallidum subsp. pallidum SS14 6333661 YP_001933724.1 CDS flgE NC_010741.1 793394 794785 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(793394..794785) Treponema pallidum subsp. pallidum SS14 6333789 YP_001933725.1 CDS flgD NC_010741.1 794856 795317 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein complement(794856..795317) Treponema pallidum subsp. pallidum SS14 6333209 YP_001933726.1 CDS tap1 NC_010741.1 795393 797036 R treponemal aqueous protein complement(795393..797036) Treponema pallidum subsp. pallidum SS14 6332805 YP_001933727.1 CDS TPASS_0730 NC_010741.1 797005 798102 D hypothetical protein 797005..798102 Treponema pallidum subsp. pallidum SS14 6333796 YP_001933728.1 CDS TPASS_0731 NC_010741.1 798122 798832 D hypothetical protein 798122..798832 Treponema pallidum subsp. pallidum SS14 6333510 YP_001933729.1 CDS folD NC_010741.1 798797 799744 R methylenetetrahydrofolate dehydrogenase complement(798797..799744) Treponema pallidum subsp. pallidum SS14 6333528 YP_001933730.1 CDS TPASS_0733 NC_010741.1 799840 800499 D hypothetical protein 799840..800499 Treponema pallidum subsp. pallidum SS14 6333500 YP_001933731.1 CDS deoD NC_010741.1 800532 801233 R purine nucleoside phosphorylase complement(800532..801233) Treponema pallidum subsp. pallidum SS14 6333005 YP_001933732.1 CDS gltA NC_010741.1 801315 802871 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(801315..802871) Treponema pallidum subsp. pallidum SS14 6333492 YP_001933733.1 CDS hydG NC_010741.1 802874 803716 R ferredoxin-NADP(+) reductase subunit alpha complement(802874..803716) Treponema pallidum subsp. pallidum SS14 6333519 YP_001933734.1 CDS msmE NC_010741.1 803950 805260 D sugar ABC transporter, periplasmic binding protein 803950..805260 Treponema pallidum subsp. pallidum SS14 6333482 YP_001933735.1 CDS TPASS_0738 NC_010741.1 805306 805641 R hypothetical protein complement(805306..805641) Treponema pallidum subsp. pallidum SS14 6333488 YP_001933736.1 CDS TPASS_0739 NC_010741.1 805638 806834 R hypothetical protein complement(805638..806834) Treponema pallidum subsp. pallidum SS14 6333471 YP_001933737.1 CDS TPASS_0740 NC_010741.1 806908 807474 R hypothetical protein complement(806908..807474) Treponema pallidum subsp. pallidum SS14 6333287 YP_001933738.1 CDS TPASS_0741 NC_010741.1 807602 808216 R hypothetical protein complement(807602..808216) Treponema pallidum subsp. pallidum SS14 6332971 YP_001933739.1 CDS obgE NC_010741.1 808213 809343 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(808213..809343) Treponema pallidum subsp. pallidum SS14 6333469 YP_001933740.1 CDS rpmA NC_010741.1 809461 809724 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(809461..809724) Treponema pallidum subsp. pallidum SS14 6333449 YP_001933741.1 CDS TPASS_0744 NC_010741.1 809755 810081 R hypothetical protein complement(809755..810081) Treponema pallidum subsp. pallidum SS14 6333462 YP_001933742.1 CDS rplU NC_010741.1 810094 810411 R 50S ribosomal protein L21 complement(810094..810411) Treponema pallidum subsp. pallidum SS14 6333869 YP_001933743.1 CDS TPASS_0746 NC_010741.1 810518 813223 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(810518..813223) Treponema pallidum subsp. pallidum SS14 6333875 YP_001933744.1 CDS TPASS_0747 NC_010741.1 813233 814267 R hypothetical protein complement(813233..814267) Treponema pallidum subsp. pallidum SS14 6333825 YP_001933745.1 CDS cfpA NC_010741.1 814356 816392 R cytoplasmic filament protein A complement(814356..816392) Treponema pallidum subsp. pallidum SS14 6333827 YP_001933746.1 CDS TPASS_0749 NC_010741.1 816370 816591 R hypothetical protein complement(816370..816591) Treponema pallidum subsp. pallidum SS14 6333826 YP_001933747.1 CDS TPASS_0750 NC_010741.1 816561 817232 D hypothetical protein 816561..817232 Treponema pallidum subsp. pallidum SS14 6333824 YP_001933748.1 CDS TPASS_0751 NC_010741.1 817269 817982 D laminin-binding protein 817269..817982 Treponema pallidum subsp. pallidum SS14 6332913 YP_001933749.1 CDS TPASS_0752 NC_010741.1 818120 819262 R hypothetical protein complement(818120..819262) Treponema pallidum subsp. pallidum SS14 6333218 YP_001933750.1 CDS TPASS_0753 NC_010741.1 819343 819627 R hypothetical protein complement(819343..819627) Treponema pallidum subsp. pallidum SS14 6333840 YP_001933751.1 CDS TPASS_0754 NC_010741.1 819624 820994 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(819624..820994) Treponema pallidum subsp. pallidum SS14 6333836 YP_001933752.1 CDS ptsN2 NC_010741.1 821036 821578 R PTS system, nitrogen regulatory IIA component complement(821036..821578) Treponema pallidum subsp. pallidum SS14 6333294 YP_001933753.1 CDS fmt NC_010741.1 821778 822737 R methionyl-tRNA formyltransferase complement(821778..822737) Treponema pallidum subsp. pallidum SS14 6333246 YP_001933754.1 CDS def NC_010741.1 822741 823229 R polypeptide deformylase complement(822741..823229) Treponema pallidum subsp. pallidum SS14 6333575 YP_001933755.1 CDS rpsU NC_010741.1 823270 823479 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(823270..823479) Treponema pallidum subsp. pallidum SS14 6333574 YP_001933756.1 CDS TPASS_0759 NC_010741.1 823598 823717 D hypothetical protein 823598..823717 Treponema pallidum subsp. pallidum SS14 6333293 YP_001933757.1 CDS pbp3 NC_010741.1 823674 825632 D penicillin-binding protein 823674..825632 Treponema pallidum subsp. pallidum SS14 6333587 YP_001933758.1 CDS TPASS_0761 NC_010741.1 825613 826491 D hypothetical protein 825613..826491 Treponema pallidum subsp. pallidum SS14 6333568 YP_001933759.1 CDS TPASS_0762 NC_010741.1 826520 827701 D hypothetical protein 826520..827701 Treponema pallidum subsp. pallidum SS14 6333245 YP_001933760.1 CDS TPASS_0763 NC_010741.1 827763 828704 R hypothetical protein complement(827763..828704) Treponema pallidum subsp. pallidum SS14 6333700 YP_001933761.1 CDS TPASS_0764 NC_010741.1 828663 829838 D hypothetical protein 828663..829838 Treponema pallidum subsp. pallidum SS14 6333596 YP_001933762.1 CDS ftsH NC_010741.1 829820 831649 R cell division protein complement(829820..831649) Treponema pallidum subsp. pallidum SS14 6333244 YP_001933763.1 CDS TPASS_0766 NC_010741.1 832052 832933 D hypothetical protein 832052..832933 Treponema pallidum subsp. pallidum SS14 6333291 YP_001933764.1 CDS fusA2 NC_010741.1 833144 835231 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 833144..835231 Treponema pallidum subsp. pallidum SS14 6333290 YP_001933765.1 CDS tmpA NC_010741.1 835370 836407 D membrane protein 835370..836407 Treponema pallidum subsp. pallidum SS14 6333292 YP_001933766.1 CDS tmpB NC_010741.1 836404 837381 D outer membrane protein 836404..837381 Treponema pallidum subsp. pallidum SS14 6333871 YP_001933767.1 CDS TPASS_0770 NC_010741.1 837426 839375 D ATP-dependent RNA helicase 837426..839375 Treponema pallidum subsp. pallidum SS14 6333070 YP_001933768.1 CDS TPASS_0771 NC_010741.1 839396 841177 R hypothetical protein complement(839396..841177) Treponema pallidum subsp. pallidum SS14 6333854 YP_001933769.1 CDS TPASS_0772 NC_010741.1 841181 842005 D hypothetical protein 841181..842005 Treponema pallidum subsp. pallidum SS14 6333851 YP_001933770.1 CDS htrA1 NC_010741.1 842045 843241 R periplasmic serine protease DO complement(842045..843241) Treponema pallidum subsp. pallidum SS14 6333857 YP_001933771.1 CDS mgtC NC_010741.1 843586 844260 D Mg2+ transport protein 843586..844260 Treponema pallidum subsp. pallidum SS14 6333832 YP_001933772.1 CDS nth NC_010741.1 844340 844975 D endonuclease III 844340..844975 Treponema pallidum subsp. pallidum SS14 6333835 YP_001933773.1 CDS TPASS_0776 NC_010741.1 845052 845828 R hypothetical protein complement(845052..845828) Treponema pallidum subsp. pallidum SS14 6333834 YP_001933774.1 CDS TPASS_0777 NC_010741.1 845881 846105 R hypothetical protein complement(845881..846105) Treponema pallidum subsp. pallidum SS14 6333848 YP_001933775.1 CDS mazG NC_010741.1 846174 847085 R protein MazG complement(846174..847085) Treponema pallidum subsp. pallidum SS14 6333838 YP_001933776.1 CDS dedA NC_010741.1 847082 847726 R protein DedA complement(847082..847726) Treponema pallidum subsp. pallidum SS14 6333839 YP_001933777.1 CDS nadE NC_010741.1 847773 849812 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(847773..849812) Treponema pallidum subsp. pallidum SS14 6333852 YP_001933778.1 CDS TPASS_0781 NC_010741.1 849849 850310 R hypothetical protein complement(849849..850310) Treponema pallidum subsp. pallidum SS14 6332814 YP_001933779.1 CDS TPASS_0782 NC_010741.1 850356 850799 R hypothetical protein complement(850356..850799) Treponema pallidum subsp. pallidum SS14 6333666 YP_001933780.1 CDS TPASS_0783 NC_010741.1 850828 851961 R hypothetical protein complement(850828..851961) Treponema pallidum subsp. pallidum SS14 6332818 YP_001933781.1 CDS TPASS_0784 NC_010741.1 852127 852726 D hypothetical protein 852127..852726 Treponema pallidum subsp. pallidum SS14 6333829 YP_001933782.1 CDS TPASS_0785 NC_010741.1 852723 853409 D hypothetical protein 852723..853409 Treponema pallidum subsp. pallidum SS14 6332804 YP_001933783.1 CDS TPASS_0786 NC_010741.1 853541 854254 D ABC transporter, ATP-binding protein 853541..854254 Treponema pallidum subsp. pallidum SS14 6333853 YP_001933784.1 CDS TPASS_0787 NC_010741.1 854301 854720 R hypothetical protein complement(854301..854720) Treponema pallidum subsp. pallidum SS14 6332883 YP_001933785.1 CDS TPASS_0788 NC_010741.1 854802 855692 D hypothetical protein 854802..855692 Treponema pallidum subsp. pallidum SS14 6332892 YP_001933786.1 CDS TPASS_0789 NC_010741.1 855705 856481 R hypothetical protein complement(855705..856481) Treponema pallidum subsp. pallidum SS14 6333842 YP_001933787.1 CDS TPASS_0790 NC_010741.1 856500 859166 R antibiotic transport protein complement(856500..859166) Treponema pallidum subsp. pallidum SS14 6332896 YP_001933788.1 CDS TPASS_0791 NC_010741.1 859309 859554 R hypothetical protein complement(859309..859554) Treponema pallidum subsp. pallidum SS14 6333844 YP_001933789.1 CDS flaB2 NC_010741.1 859540 860400 D flagellar filament 33 kDa core protein 859540..860400 Treponema pallidum subsp. pallidum SS14 6333847 YP_001933790.1 CDS TPASS_0793 NC_010741.1 860479 862098 D hypothetical protein 860479..862098 Treponema pallidum subsp. pallidum SS14 6333843 YP_001933791.1 CDS metK NC_010741.1 862135 863325 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(862135..863325) Treponema pallidum subsp. pallidum SS14 6333330 YP_001933792.1 CDS TPASS_0795 NC_010741.1 863379 863537 D hypothetical protein 863379..863537 Treponema pallidum subsp. pallidum SS14 6333329 YP_001933793.1 CDS TPASS_0796 NC_010741.1 863526 864614 R hypothetical protein complement(863526..864614) Treponema pallidum subsp. pallidum SS14 6333271 YP_001933794.1 CDS proC NC_010741.1 864674 865465 R 1-pyrroline-5-carboxylate reductase complement(864674..865465) Treponema pallidum subsp. pallidum SS14 6333328 YP_001933795.1 CDS metG NC_010741.1 865516 867951 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(865516..867951) Treponema pallidum subsp. pallidum SS14 6333326 YP_001933796.1 CDS TPASS_0799 NC_010741.1 867984 868136 D hypothetical protein 867984..868136 Treponema pallidum subsp. pallidum SS14 6332936 YP_001933797.1 CDS dacC NC_010741.1 868279 869751 D serine-type D-Ala-D-Ala carboxypeptidase 868279..869751 Treponema pallidum subsp. pallidum SS14 6333383 YP_001933798.1 CDS clpA NC_010741.1 869812 872241 R ATP-dependent Clp protease, subunit A complement(869812..872241) Treponema pallidum subsp. pallidum SS14 6332935 YP_001933799.1 CDS TPASS_0802 NC_010741.1 872287 872616 D hypothetical protein 872287..872616 Treponema pallidum subsp. pallidum SS14 6333382 YP_001933800.1 CDS TPASS_0803 NC_010741.1 872630 873838 D hypothetical protein 872630..873838 Treponema pallidum subsp. pallidum SS14 6333380 YP_001933801.1 CDS ugpC NC_010741.1 873916 875079 D sugar ABC transporter, ATP-binding protein 873916..875079 Treponema pallidum subsp. pallidum SS14 6332934 YP_001933802.1 CDS rnb NC_010741.1 874930 877209 R exoribonuclease II complement(874930..877209) Treponema pallidum subsp. pallidum SS14 6333378 YP_001933803.1 CDS TPASS_0806 NC_010741.1 877206 878702 R protein FemA complement(877206..878702) Treponema pallidum subsp. pallidum SS14 6332933 YP_001933804.1 CDS rpmF NC_010741.1 878831 879019 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 878831..879019 Treponema pallidum subsp. pallidum SS14 6333373 YP_001933805.1 CDS acpP NC_010741.1 879080 879316 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 879080..879316 Treponema pallidum subsp. pallidum SS14 6333374 YP_001933806.1 CDS rnc NC_010741.1 879313 880077 D ribonuclease III 879313..880077 Treponema pallidum subsp. pallidum SS14 6332928 YP_001933807.1 CDS dam NC_010741.1 880108 881019 D DNA adenine methyltransferase 880108..881019 Treponema pallidum subsp. pallidum SS14 6332929 YP_001933808.1 CDS TPASS_0811 NC_010741.1 881090 881215 R hypothetical protein complement(881090..881215) Treponema pallidum subsp. pallidum SS14 6333372 YP_001933809.1 CDS TPASS_0813 NC_010741.1 882626 883912 R hypothetical protein complement(882626..883912) Treponema pallidum subsp. pallidum SS14 6333384 YP_001933810.1 CDS trxB NC_010741.1 884135 885058 D thioredoxin reductase 884135..885058 Treponema pallidum subsp. pallidum SS14 6333385 YP_001933811.1 CDS TPASS_0815 NC_010741.1 885180 886163 D hypothetical protein 885180..886163 Treponema pallidum subsp. pallidum SS14 6333371 YP_001933812.1 CDS TPASS_0816 NC_010741.1 886235 886900 R hypothetical protein complement(886235..886900) Treponema pallidum subsp. pallidum SS14 6333370 YP_001933813.1 CDS eno NC_010741.1 887038 888336 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(887038..888336) Treponema pallidum subsp. pallidum SS14 6333388 YP_001933814.1 CDS TPASS_0818 NC_010741.1 888333 888485 R hypothetical protein complement(888333..888485) Treponema pallidum subsp. pallidum SS14 6332939 YP_001933815.1 CDS TPASS_0819 NC_010741.1 888512 889444 R member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(888512..889444) Treponema pallidum subsp. pallidum SS14 6333391 YP_001933816.1 CDS TPASS_0820 NC_010741.1 889472 890242 R hypothetical protein complement(889472..890242) Treponema pallidum subsp. pallidum SS14 6332940 YP_001933817.1 CDS tpn32 NC_010741.1 890338 891144 R lipoprotein Tpn32 complement(890338..891144) Treponema pallidum subsp. pallidum SS14 6333394 YP_001933818.1 CDS TPASS_0822 NC_010741.1 891225 892130 R hypothetical protein complement(891225..892130) Treponema pallidum subsp. pallidum SS14 6332941 YP_001933819.1 CDS rbo NC_010741.1 892218 892604 R desulfoferrodoxin complement(892218..892604) Treponema pallidum subsp. pallidum SS14 6333395 YP_001933820.1 CDS dxs NC_010741.1 893001 894893 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 893001..894893 Treponema pallidum subsp. pallidum SS14 6333397 YP_001933821.1 CDS TPASS_0825 NC_010741.1 894890 895075 D hypothetical protein 894890..895075 Treponema pallidum subsp. pallidum SS14 6332944 YP_001933822.1 CDS TPASS_0826 NC_010741.1 895062 895883 D hypothetical protein 895062..895883 Treponema pallidum subsp. pallidum SS14 6332943 YP_001933823.1 CDS TPASS_0827 NC_010741.1 895546 896823 D hypothetical protein 895546..896823 Treponema pallidum subsp. pallidum SS14 6333402 YP_001933824.1 CDS acpS NC_010741.1 896820 897197 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 896820..897197 Treponema pallidum subsp. pallidum SS14 6333401 YP_001933825.1 CDS TPASS_0829 NC_010741.1 897194 898078 D hypothetical protein 897194..898078 Treponema pallidum subsp. pallidum SS14 6332946 YP_001933826.1 CDS truA NC_010741.1 898075 898917 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 898075..898917 Treponema pallidum subsp. pallidum SS14 6333404 YP_001933827.1 CDS argS NC_010741.1 898927 900696 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(898927..900696) Treponema pallidum subsp. pallidum SS14 6332947 YP_001933828.1 CDS TPASS_0832 NC_010741.1 900719 901534 R hypothetical protein complement(900719..901534) Treponema pallidum subsp. pallidum SS14 6333406 YP_001933829.1 CDS TPASS_0833 NC_010741.1 901601 902323 D hypothetical protein 901601..902323 Treponema pallidum subsp. pallidum SS14 6333408 YP_001933830.1 CDS tyrS NC_010741.1 902380 903630 R tyrosyl-tRNA synthetase complement(902380..903630) Treponema pallidum subsp. pallidum SS14 6333407 YP_001933831.1 CDS TPASS_0835 NC_010741.1 903717 906521 R ankyrin complement(903717..906521) Treponema pallidum subsp. pallidum SS14 6333409 YP_001933832.1 CDS TPASS_0836 NC_010741.1 906662 907486 R hypothetical protein complement(906662..907486) Treponema pallidum subsp. pallidum SS14 6333410 YP_001933833.1 CDS thrS NC_010741.1 907634 909412 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 907634..909412 Treponema pallidum subsp. pallidum SS14 6333411 YP_001933834.1 CDS TPASS_0838 NC_010741.1 909461 911125 R ABC transporter, ATP-binding protein complement(909461..911125) Treponema pallidum subsp. pallidum SS14 6332949 YP_001933835.1 CDS TPASS_0839 NC_010741.1 911200 912207 R hypothetical protein complement(911200..912207) Treponema pallidum subsp. pallidum SS14 6333413 YP_001933836.1 CDS TPASS_0840 NC_010741.1 912312 914561 D hypothetical protein 912312..914561 Treponema pallidum subsp. pallidum SS14 6333412 YP_001933837.1 CDS htrA2 NC_010741.1 914623 916080 R periplasmic serine protease DO complement(914623..916080) Treponema pallidum subsp. pallidum SS14 6332950 YP_001933838.1 CDS map NC_010741.1 916392 917159 R methionine aminopeptidase complement(916392..917159) Treponema pallidum subsp. pallidum SS14 6333414 YP_001933839.1 CDS TPASS_0843 NC_010741.1 917283 918107 R heat shock protein complement(917283..918107) Treponema pallidum subsp. pallidum SS14 6332953 YP_001933840.1 CDS gap NC_010741.1 918200 919252 D glyceraldehyde 3-phosphate dehydrogenase 918200..919252 Treponema pallidum subsp. pallidum SS14 6333418 YP_001933841.1 CDS TPASS_0845 NC_010741.1 919307 919897 R hypothetical protein complement(919307..919897) Treponema pallidum subsp. pallidum SS14 6333420 YP_001933842.1 CDS TPASS_0846 NC_010741.1 919878 920204 R hypothetical protein complement(919878..920204) Treponema pallidum subsp. pallidum SS14 6333419 YP_001933843.1 CDS TPASS_0847 NC_010741.1 920204 920539 R hypothetical protein complement(920204..920539) Treponema pallidum subsp. pallidum SS14 6333421 YP_001933844.1 CDS rplT NC_010741.1 920533 920901 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(920533..920901) Treponema pallidum subsp. pallidum SS14 6332955 YP_001933845.1 CDS rpmI NC_010741.1 920934 921134 R 50S ribosomal protein L35 complement(920934..921134) Treponema pallidum subsp. pallidum SS14 6333424 YP_001933846.1 CDS infC NC_010741.1 921187 921726 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(921187..921726) Treponema pallidum subsp. pallidum SS14 6333423 YP_001933847.1 CDS TPASS_0851 NC_010741.1 921889 924063 D hypothetical protein 921889..924063 Treponema pallidum subsp. pallidum SS14 6333426 YP_001933848.1 CDS lgt NC_010741.1 924092 925090 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(924092..925090) Treponema pallidum subsp. pallidum SS14 6332956 YP_001933849.1 CDS ylxH2 NC_010741.1 925241 926377 R ATP-binding protein complement(925241..926377) Treponema pallidum subsp. pallidum SS14 6332957 YP_001933850.1 CDS TPASS_0854 NC_010741.1 926432 931033 R hypothetical protein complement(926432..931033) Treponema pallidum subsp. pallidum SS14 6333428 YP_001933851.1 CDS TPASS_0855 NC_010741.1 931030 934413 R hypothetical protein complement(931030..934413) Treponema pallidum subsp. pallidum SS14 6333430 YP_001933852.1 CDS TPASS_0856 NC_010741.1 934569 935546 D hypothetical protein 934569..935546 Treponema pallidum subsp. pallidum SS14 6333429 YP_001933853.1 CDS TPASS_0857 NC_010741.1 935549 935869 R hypothetical protein complement(935549..935869) Treponema pallidum subsp. pallidum SS14 6333431 YP_001933854.1 CDS TPASS_0858 NC_010741.1 935854 937080 D hypothetical protein 935854..937080 Treponema pallidum subsp. pallidum SS14 6332959 YP_001933855.1 CDS TPASS_0859 NC_010741.1 937162 937860 D hypothetical protein 937162..937860 Treponema pallidum subsp. pallidum SS14 6332960 YP_001933856.1 CDS TPASS_0860 NC_010741.1 937925 938647 D hypothetical protein 937925..938647 Treponema pallidum subsp. pallidum SS14 6332961 YP_001933857.1 CDS glmS NC_010741.1 938722 940629 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(938722..940629) Treponema pallidum subsp. pallidum SS14 6333434 YP_001933858.1 CDS fklB NC_010741.1 940866 941660 R peptidyl-prolyl cis-trans isomerase, FKBP-type, 22 kDa complement(940866..941660) Treponema pallidum subsp. pallidum SS14 6333435 YP_001933859.1 CDS nifS2 NC_010741.1 941795 943078 D nitrogen fixation protein 941795..943078 Treponema pallidum subsp. pallidum SS14 6333438 YP_001933860.1 CDS TPASS_0864 NC_010741.1 943137 944777 R hypothetical protein complement(943137..944777) Treponema pallidum subsp. pallidum SS14 6332962 YP_001933861.1 CDS TPASS_0865 NC_010741.1 944811 946253 R hypothetical protein complement(944811..946253) Treponema pallidum subsp. pallidum SS14 6333416 YP_001933862.1 CDS TPASS_0867 NC_010741.1 948246 948431 R hypothetical protein complement(948246..948431) Treponema pallidum subsp. pallidum SS14 6333369 YP_001933863.1 CDS flaB1 NC_010741.1 948600 948956 D flagellar filament 34.5 kDa core protein 948600..948956 Treponema pallidum subsp. pallidum SS14 6332925 YP_001933864.1 CDS TPASS_0869 NC_010741.1 949468 949704 D hypothetical protein 949468..949704 Treponema pallidum subsp. pallidum SS14 6332926 YP_001933865.1 CDS flaB3 NC_010741.1 949732 950589 D flagellar filament 31 kDa core protein 949732..950589 Treponema pallidum subsp. pallidum SS14 6333368 YP_001933866.1 CDS TPASS_0871 NC_010741.1 950650 950811 R hypothetical protein complement(950650..950811) Treponema pallidum subsp. pallidum SS14 6333367 YP_001933867.1 CDS fliD NC_010741.1 950887 953055 D involved in flagellin assembly; flagellar hook-associated protein FliD 950887..953055 Treponema pallidum subsp. pallidum SS14 6333656 YP_001933868.1 CDS TPASS_0873 NC_010741.1 953067 953669 D hypothetical protein 953067..953669 Treponema pallidum subsp. pallidum SS14 6333065 YP_001933869.1 CDS TPASS_0874 NC_010741.1 953666 953941 D hypothetical protein 953666..953941 Treponema pallidum subsp. pallidum SS14 6333659 YP_001933870.1 CDS TPASS_0875 NC_010741.1 953981 954388 D hypothetical protein 953981..954388 Treponema pallidum subsp. pallidum SS14 6333650 YP_001933871.1 CDS TPASS_0876 NC_010741.1 954435 955100 D hypothetical protein 954435..955100 Treponema pallidum subsp. pallidum SS14 6333657 YP_001933872.1 CDS TPASS_0877 NC_010741.1 955105 956202 D hypothetical protein 955105..956202 Treponema pallidum subsp. pallidum SS14 6333357 YP_001933873.1 CDS TPASS_0878 NC_010741.1 956215 957165 R hypothetical protein complement(956215..957165) Treponema pallidum subsp. pallidum SS14 6333206 YP_001933874.1 CDS TPASS_0879 NC_010741.1 957171 958652 R hypothetical protein complement(957171..958652) Treponema pallidum subsp. pallidum SS14 6333063 YP_001933875.1 CDS TPASS_0880 NC_010741.1 958649 959374 R membrane spanning protein complement(958649..959374) Treponema pallidum subsp. pallidum SS14 6333064 YP_001933876.1 CDS natA NC_010741.1 959364 960170 R ABC transporter, ATP-binding protein complement(959364..960170) Treponema pallidum subsp. pallidum SS14 6333653 YP_001933877.1 CDS TPASS_0882 NC_010741.1 960249 961751 R hypothetical protein complement(960249..961751) Treponema pallidum subsp. pallidum SS14 6332835 YP_001933878.1 CDS TPASS_0883 NC_010741.1 961717 962814 R hypothetical protein complement(961717..962814) Treponema pallidum subsp. pallidum SS14 6333652 YP_001933879.1 CDS TPASS_0884 NC_010741.1 962832 963920 R hypothetical protein complement(962832..963920) Treponema pallidum subsp. pallidum SS14 6333655 YP_001933880.1 CDS dut NC_010741.1 963950 964390 R deoxyuridine 5'-triphosphate nucleotidohydrolase complement(963950..964390) Treponema pallidum subsp. pallidum SS14 6333651 YP_001933881.1 CDS pnp NC_010741.1 964387 966495 R polynucleotide phosphorylase/polyadenylase complement(964387..966495) Treponema pallidum subsp. pallidum SS14 6332836 YP_001933882.1 CDS rpsO NC_010741.1 966643 966912 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(966643..966912) Treponema pallidum subsp. pallidum SS14 6333649 YP_001933883.1 CDS ribF NC_010741.1 966928 967755 R riboflavin kinase/FMN adenylyltransferase complement(966928..967755) Treponema pallidum subsp. pallidum SS14 6332834 YP_001933884.1 CDS truB NC_010741.1 967759 968859 R tRNA pseudouridine 55 synthase complement(967759..968859) Treponema pallidum subsp. pallidum SS14 6333647 YP_001933885.1 CDS rbfA NC_010741.1 968837 969217 R ribosome-binding factor A complement(968837..969217) Treponema pallidum subsp. pallidum SS14 6333061 YP_001933886.1 CDS infB NC_010741.1 969214 971742 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(969214..971742) Treponema pallidum subsp. pallidum SS14 6333644 YP_001933887.1 CDS nusA NC_010741.1 971918 973375 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(971918..973375) Treponema pallidum subsp. pallidum SS14 6333648 YP_001933888.1 CDS TPASS_0893 NC_010741.1 973425 973895 R hypothetical protein complement(973425..973895) Treponema pallidum subsp. pallidum SS14 6333646 YP_001933889.1 CDS TPASS_0894 NC_010741.1 974070 975092 R hypothetical protein complement(974070..975092) Treponema pallidum subsp. pallidum SS14 6333059 YP_001933890.1 CDS TPASS_0895 NC_010741.1 975099 975605 R hypothetical protein complement(975099..975605) Treponema pallidum subsp. pallidum SS14 6333645 YP_001933891.1 CDS TPASS_0896 NC_010741.1 975627 975779 R hypothetical protein complement(975627..975779) Treponema pallidum subsp. pallidum SS14 6333642 YP_001933892.1 CDS tprK NC_010741.1 975761 977278 R this gene is heterogenous among individual cells in a population; believed to be under immune response pressure; not to determine a single unambiguous sequence; protein TprK complement(975761..977278) Treponema pallidum subsp. pallidum SS14 6332833 YP_001933893.1 CDS TPASS_0898 NC_010741.1 977275 980994 R ATP-dependent nuclease, subunit A complement(977275..980994) Treponema pallidum subsp. pallidum SS14 6333641 YP_001933894.1 CDS TPASS_0899 NC_010741.1 980991 981578 R hypothetical protein complement(980991..981578) Treponema pallidum subsp. pallidum SS14 6333640 YP_001933895.1 CDS TPASS_0900 NC_010741.1 981557 983950 R hypothetical protein complement(981557..983950) Treponema pallidum subsp. pallidum SS14 6333058 YP_001933896.1 CDS TPASS_0901 NC_010741.1 983989 985401 R hypothetical protein complement(983989..985401) Treponema pallidum subsp. pallidum SS14 6333638 YP_001933897.1 CDS est NC_010741.1 985442 986323 R carboxylesterase complement(985442..986323) Treponema pallidum subsp. pallidum SS14 6332832 YP_001933898.1 CDS murD NC_010741.1 986325 987923 D UDP-N-acetylmuramoylalanine--D-glutamate ligase 986325..987923 Treponema pallidum subsp. pallidum SS14 6333055 YP_001933899.1 CDS TPASS_0904 NC_010741.1 987916 988167 D hypothetical protein 987916..988167 Treponema pallidum subsp. pallidum SS14 6333639 YP_001933900.1 CDS rpsP NC_010741.1 988130 988501 D ribosomal protein S16 988130..988501 Treponema pallidum subsp. pallidum SS14 6332831 YP_001933901.1 CDS TPASS_0906 NC_010741.1 988510 988752 D hypothetical protein 988510..988752 Treponema pallidum subsp. pallidum SS14 6333635 YP_001933902.1 CDS TPASS_0907 NC_010741.1 988815 989339 D hypothetical protein 988815..989339 Treponema pallidum subsp. pallidum SS14 6333636 YP_001933903.1 CDS trmD NC_010741.1 989336 990088 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 989336..990088 Treponema pallidum subsp. pallidum SS14 6333637 YP_001933904.1 CDS rplS NC_010741.1 990060 990431 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 990060..990431 Treponema pallidum subsp. pallidum SS14 6333633 YP_001933905.1 CDS TPASS_0910 NC_010741.1 990428 991348 D hypothetical protein 990428..991348 Treponema pallidum subsp. pallidum SS14 6333632 YP_001933906.1 CDS TPASS_0911 NC_010741.1 991370 991621 D hypothetical protein 991370..991621 Treponema pallidum subsp. pallidum SS14 6333054 YP_001933907.1 CDS TPASS_0912 NC_010741.1 991634 992956 D hypothetical protein 991634..992956 Treponema pallidum subsp. pallidum SS14 6333634 YP_001933908.1 CDS TPASS_0913 NC_010741.1 992940 993320 D hypothetical protein 992940..993320 Treponema pallidum subsp. pallidum SS14 6332830 YP_001933909.1 CDS TPASS_0914 NC_010741.1 993492 993878 D hypothetical protein 993492..993878 Treponema pallidum subsp. pallidum SS14 6333631 YP_001933910.1 CDS TPASS_0915 NC_010741.1 993952 995286 D hypothetical protein 993952..995286 Treponema pallidum subsp. pallidum SS14 6333052 YP_001933911.1 CDS TPASS_0916 NC_010741.1 995343 995471 D hypothetical protein 995343..995471 Treponema pallidum subsp. pallidum SS14 6333629 YP_001933912.1 CDS mgtE NC_010741.1 995455 996804 D Mg2+ transport protein 995455..996804 Treponema pallidum subsp. pallidum SS14 6333628 YP_001933913.1 CDS TPASS_0918 NC_010741.1 996819 997592 D hypothetical protein 996819..997592 Treponema pallidum subsp. pallidum SS14 6333630 YP_001933914.1 CDS trx NC_010741.1 997618 997935 R thioredoxin complement(997618..997935) Treponema pallidum subsp. pallidum SS14 6332829 YP_001933915.1 CDS TPASS_0920 NC_010741.1 998158 1000587 D hypothetical protein 998158..1000587 Treponema pallidum subsp. pallidum SS14 6333051 YP_001933916.1 CDS TPASS_0921 NC_010741.1 1000695 1002032 D NADH oxidase 1000695..1002032 Treponema pallidum subsp. pallidum SS14 6333626 YP_001933917.1 CDS TPASS_0922 NC_010741.1 1002166 1003059 R hypothetical protein complement(1002166..1003059) Treponema pallidum subsp. pallidum SS14 6333625 YP_001933918.1 CDS TPASS_0923 NC_010741.1 1003098 1004117 R hypothetical protein complement(1003098..1004117) Treponema pallidum subsp. pallidum SS14 6333048 YP_001933919.1 CDS tex NC_010741.1 1004441 1006027 D protein Tex 1004441..1006027 Treponema pallidum subsp. pallidum SS14 6332828 YP_001933920.1 CDS TPASS_0925 NC_010741.1 1007144 1007584 D flavodoxin 1007144..1007584 Treponema pallidum subsp. pallidum SS14 6333620 YP_001933921.1 CDS TPASS_0926 NC_010741.1 1007735 1009273 R signal peptidase I complement(1007735..1009273) Treponema pallidum subsp. pallidum SS14 6333621 YP_001933922.1 CDS TPASS_0927 NC_010741.1 1009365 1009955 D hypothetical protein 1009365..1009955 Treponema pallidum subsp. pallidum SS14 6333046 YP_001933923.1 CDS TPASS_0928 NC_010741.1 1010050 1010790 D hypothetical protein 1010050..1010790 Treponema pallidum subsp. pallidum SS14 6333045 YP_001933924.1 CDS TPASS_0929 NC_010741.1 1010802 1011572 D hypothetical protein 1010802..1011572 Treponema pallidum subsp. pallidum SS14 6332826 YP_001933925.1 CDS TPASS_0930 NC_010741.1 1011596 1013317 D hypothetical protein 1011596..1013317 Treponema pallidum subsp. pallidum SS14 6333616 YP_001933926.1 CDS TPASS_0931 NC_010741.1 1013401 1014831 R hypothetical protein complement(1013401..1014831) Treponema pallidum subsp. pallidum SS14 6333617 YP_001933927.1 CDS TPASS_0932 NC_010741.1 1014841 1014933 R hypothetical protein complement(1014841..1014933) Treponema pallidum subsp. pallidum SS14 6333619 YP_001933928.1 CDS murE NC_010741.1 1014943 1016565 R UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(1014943..1016565) Treponema pallidum subsp. pallidum SS14 6333615 YP_001933929.1 CDS TPASS_0934 NC_010741.1 1016701 1017924 D glutamate transporter 1016701..1017924 Treponema pallidum subsp. pallidum SS14 6333043 YP_001933930.1 CDS TPASS_0935 NC_010741.1 1017917 1018855 R N-acetylphosphinothricin-tripetide-deacetylase complement(1017917..1018855) Treponema pallidum subsp. pallidum SS14 6333613 YP_001933931.1 CDS TPASS_0936 NC_010741.1 1019049 1020122 R hemolysin complement(1019049..1020122) Treponema pallidum subsp. pallidum SS14 6333042 YP_001933932.1 CDS TPASS_0937 NC_010741.1 1020294 1020929 R hypothetical protein complement(1020294..1020929) Treponema pallidum subsp. pallidum SS14 6333609 YP_001933933.1 CDS TPASS_0938 NC_010741.1 1020926 1021756 R hypothetical protein complement(1020926..1021756) Treponema pallidum subsp. pallidum SS14 6333610 YP_001933934.1 CDS TPASS_0939 NC_010741.1 1021821 1025375 R pyruvate oxidoreductase complement(1021821..1025375) Treponema pallidum subsp. pallidum SS14 6333612 YP_001933935.1 CDS TPASS_0940 NC_010741.1 1025391 1025531 R hypothetical protein complement(1025391..1025531) Treponema pallidum subsp. pallidum SS14 6332824 YP_001933936.1 CDS TPASS_0941 NC_010741.1 1025570 1026088 R hypothetical protein complement(1025570..1026088) Treponema pallidum subsp. pallidum SS14 6333607 YP_001933937.1 CDS TPASS_0942 NC_010741.1 1026165 1026629 R hypothetical protein complement(1026165..1026629) Treponema pallidum subsp. pallidum SS14 6333611 YP_001933938.1 CDS fliS NC_010741.1 1026635 1027081 R flagellar protein complement(1026635..1027081) Treponema pallidum subsp. pallidum SS14 6333041 YP_001933939.1 CDS TPASS_0944 NC_010741.1 1027130 1028302 R hypothetical protein complement(1027130..1028302) Treponema pallidum subsp. pallidum SS14 6333040 YP_001933940.1 CDS cfxE NC_010741.1 1028473 1029129 R ribulose-phosphate 3-epimerase complement(1028473..1029129) Treponema pallidum subsp. pallidum SS14 6333830 YP_001933941.1 CDS gidB NC_010741.1 1029281 1029949 D glucose-inhibited division protein B 1029281..1029949 Treponema pallidum subsp. pallidum SS14 6333831 YP_001933942.1 CDS cyp NC_010741.1 1029994 1030641 R peptidyl-prolyl cis-trans isomerase, cyclophilin-binding complement(1029994..1030641) Treponema pallidum subsp. pallidum SS14 6332794 YP_001933943.1 CDS jag NC_010741.1 1030638 1031333 R spoIIIJ-associated protein complement(1030638..1031333) Treponema pallidum subsp. pallidum SS14 6333846 YP_001933944.1 CDS TPASS_0949 NC_010741.1 1031349 1033346 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(1031349..1033346) Treponema pallidum subsp. pallidum SS14 6333837 YP_001933945.1 CDS TPASS_0950 NC_010741.1 1033622 1033906 R hypothetical protein complement(1033622..1033906) Treponema pallidum subsp. pallidum SS14 6333833 YP_001933946.1 CDS rpmH NC_010741.1 1033910 1034065 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(1033910..1034065) Treponema pallidum subsp. pallidum SS14 6332887 YP_001933947.1 CDS TPASS_0952 NC_010741.1 1034185 1035222 R lipase complement(1034185..1035222) Treponema pallidum subsp. pallidum SS14 6333849 YP_001933948.1 CDS traB NC_010741.1 1035304 1036494 R pheromone shutdown protein complement(1035304..1036494) Treponema pallidum subsp. pallidum SS14 6333099 YP_001933949.1 CDS TPASS_0954 NC_010741.1 1036581 1038017 R hypothetical protein complement(1036581..1038017) Treponema pallidum subsp. pallidum SS14 6332869 YP_001933950.1 CDS TPASS_0955 NC_010741.1 1038089 1038361 R hypothetical protein complement(1038089..1038361) Treponema pallidum subsp. pallidum SS14 6333111 YP_001933951.1 CDS TPASS_0956 NC_010741.1 1038457 1039428 D hypothetical protein 1038457..1039428 Treponema pallidum subsp. pallidum SS14 6333094 YP_001933952.1 CDS tp33 NC_010741.1 1039519 1040547 D protein Tp33 1039519..1040547 Treponema pallidum subsp. pallidum SS14 6333124 YP_001933953.1 CDS dctM NC_010741.1 1040579 1042477 D dicarboxylate transporter 1040579..1042477 Treponema pallidum subsp. pallidum SS14 6333143 YP_001933954.1 CDS TPASS_0959 NC_010741.1 1042546 1042935 R hypothetical protein complement(1042546..1042935) Treponema pallidum subsp. pallidum SS14 6332970 YP_001933955.1 CDS flgG NC_010741.1 1042947 1043741 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(1042947..1043741) Treponema pallidum subsp. pallidum SS14 6333331 YP_001933956.1 CDS flgG2 NC_010741.1 1043817 1044632 R flagellar basal-body rod protein complement(1043817..1044632) Treponema pallidum subsp. pallidum SS14 6333214 YP_001933957.1 CDS TPASS_0962 NC_010741.1 1044718 1045950 R hypothetical protein complement(1044718..1045950) Treponema pallidum subsp. pallidum SS14 6333182 YP_001933958.1 CDS TPASS_0963 NC_010741.1 1046061 1047290 R hypothetical protein complement(1046061..1047290) Treponema pallidum subsp. pallidum SS14 6333217 YP_001933959.1 CDS TPASS_0964 NC_010741.1 1047280 1047987 R ABC transporter, ATP-binding protein complement(1047280..1047987) Treponema pallidum subsp. pallidum SS14 6333220 YP_001933960.1 CDS TPASS_0965 NC_010741.1 1047987 1048949 R membrane fusion protein complement(1047987..1048949) Treponema pallidum subsp. pallidum SS14 6333358 YP_001933961.1 CDS TPASS_0966 NC_010741.1 1048974 1050608 R hypothetical protein complement(1048974..1050608) Treponema pallidum subsp. pallidum SS14 6333296 YP_001933962.1 CDS TPASS_0967 NC_010741.1 1050655 1052208 R hypothetical protein complement(1050655..1052208) Treponema pallidum subsp. pallidum SS14 6333243 YP_001933963.1 CDS TPASS_0968 NC_010741.1 1052205 1053827 R hypothetical protein complement(1052205..1053827) Treponema pallidum subsp. pallidum SS14 6333257 YP_001933964.1 CDS TPASS_0969 NC_010741.1 1053824 1055443 R hypothetical protein complement(1053824..1055443) Treponema pallidum subsp. pallidum SS14 6333242 YP_001933965.1 CDS TPASS_0970 NC_010741.1 1055440 1055556 R hypothetical protein complement(1055440..1055556) Treponema pallidum subsp. pallidum SS14 6333556 YP_001933966.1 CDS tpd NC_010741.1 1055578 1056192 R membrane antigen, pathogen-specific complement(1055578..1056192) Treponema pallidum subsp. pallidum SS14 6333288 YP_001933967.1 CDS TPASS_0972 NC_010741.1 1056348 1057694 R hypothetical protein complement(1056348..1057694) Treponema pallidum subsp. pallidum SS14 6333285 YP_001933968.1 CDS pheS NC_010741.1 1057782 1059443 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1057782..1059443 Treponema pallidum subsp. pallidum SS14 6333239 YP_001933969.1 CDS TPASS_0974 NC_010741.1 1059495 1059776 R hypothetical protein complement(1059495..1059776) Treponema pallidum subsp. pallidum SS14 6333283 YP_001933970.1 CDS TPASS_0975 NC_010741.1 1059828 1060652 R hypothetical protein complement(1059828..1060652) Treponema pallidum subsp. pallidum SS14 6333284 YP_001933971.1 CDS TPASS_0976 NC_010741.1 1060700 1062079 D hypothetical protein 1060700..1062079 Treponema pallidum subsp. pallidum SS14 6333286 YP_001933972.1 CDS TPASS_0977 NC_010741.1 1062066 1062926 D hypothetical protein 1062066..1062926 Treponema pallidum subsp. pallidum SS14 6333282 YP_001933973.1 CDS lspA NC_010741.1 1062923 1063516 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; signal peptidase II 1062923..1063516 Treponema pallidum subsp. pallidum SS14 6333240 YP_001933974.1 CDS TPASS_0979 NC_010741.1 1063686 1064459 D hypothetical protein 1063686..1064459 Treponema pallidum subsp. pallidum SS14 6332912 YP_001933975.1 CDS ntrB NC_010741.1 1064467 1065489 D histidine phosphokinase/phophatase 1064467..1065489 Treponema pallidum subsp. pallidum SS14 6332994 YP_001933976.1 CDS TPASS_0981 NC_010741.1 1065549 1066712 D sensory transduction histidine kinase 1065549..1066712 Treponema pallidum subsp. pallidum SS14 6333009 YP_001933977.1 CDS TPASS_0982 NC_010741.1 1066728 1067354 D protein GlpG 1066728..1067354 Treponema pallidum subsp. pallidum SS14 6333006 YP_001933978.1 CDS TPASS_0983 NC_010741.1 1067344 1068060 D hypothetical protein 1067344..1068060 Treponema pallidum subsp. pallidum SS14 6332999 YP_001933979.1 CDS htpG NC_010741.1 1068084 1070003 R molecular chaperone; heat shock protein 90 complement(1068084..1070003) Treponema pallidum subsp. pallidum SS14 6333023 YP_001933980.1 CDS aspS NC_010741.1 1070147 1071955 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1070147..1071955 Treponema pallidum subsp. pallidum SS14 6333007 YP_001933981.1 CDS TPASS_0986 NC_010741.1 1072011 1072895 D hypothetical protein 1072011..1072895 Treponema pallidum subsp. pallidum SS14 6333008 YP_001933982.1 CDS TPASS_0987 NC_010741.1 1072941 1073111 R hypothetical protein complement(1072941..1073111) Treponema pallidum subsp. pallidum SS14 6333031 YP_001933983.1 CDS TPASS_0988 NC_010741.1 1073178 1074014 D hypothetical protein 1073178..1074014 Treponema pallidum subsp. pallidum SS14 6333049 YP_001933984.1 CDS TPASS_0989 NC_010741.1 1074050 1074922 R protein P26 complement(1074050..1074922) Treponema pallidum subsp. pallidum SS14 6333090 YP_001933985.1 CDS TPASS_0990 NC_010741.1 1074969 1078070 D hypothetical protein 1074969..1078070 Treponema pallidum subsp. pallidum SS14 6333035 YP_001933986.1 CDS TPASS_0991 NC_010741.1 1078134 1078292 D rubredoxin 1078134..1078292 Treponema pallidum subsp. pallidum SS14 6333089 YP_001933987.1 CDS TPASS_0992 NC_010741.1 1078325 1078612 D hypothetical protein 1078325..1078612 Treponema pallidum subsp. pallidum SS14 6333237 YP_001933988.1 CDS TPASS_0993 NC_010741.1 1078749 1079705 R rare lipoprotein A complement(1078749..1079705) Treponema pallidum subsp. pallidum SS14 6333223 YP_001933989.1 CDS TPASS_0994 NC_010741.1 1080061 1080870 D hypothetical protein 1080061..1080870 Treponema pallidum subsp. pallidum SS14 6333256 YP_001933990.1 CDS TPASS_0995 NC_010741.1 1080946 1082232 D cyclic nucleotide binding protein 1080946..1082232 Treponema pallidum subsp. pallidum SS14 6333225 YP_001933991.1 CDS TPASS_0996 NC_010741.1 1082315 1083931 R hypothetical protein complement(1082315..1083931) Treponema pallidum subsp. pallidum SS14 6333301 YP_001933992.1 CDS sppA NC_010741.1 1084088 1085884 R protease IV complement(1084088..1085884) Treponema pallidum subsp. pallidum SS14 6333863 YP_001933993.1 CDS TPASS_0998 NC_010741.1 1085918 1087420 R sodium/proton-dependent alanine transporter complement(1085918..1087420) Treponema pallidum subsp. pallidum SS14 6333252 YP_001933994.1 CDS TPASS_0999 NC_010741.1 1087492 1089891 D cell division protein 1087492..1089891 Treponema pallidum subsp. pallidum SS14 6333066 YP_001933995.1 CDS TPASS_1000 NC_010741.1 1090069 1090740 D hypothetical protein 1090069..1090740 Treponema pallidum subsp. pallidum SS14 6333253 YP_001933996.1 CDS TPASS_1001 NC_010741.1 1090880 1092061 R hypothetical protein complement(1090880..1092061) Treponema pallidum subsp. pallidum SS14 6333297 YP_001933997.1 CDS TPASS_1002 NC_010741.1 1092075 1092743 R hypothetical protein complement(1092075..1092743) Treponema pallidum subsp. pallidum SS14 6333862 YP_001933998.1 CDS TPASS_1003 NC_010741.1 1092938 1093975 D hypothetical protein 1092938..1093975 Treponema pallidum subsp. pallidum SS14 6333255 YP_001933999.1 CDS recR NC_010741.1 1093998 1094603 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1093998..1094603) Treponema pallidum subsp. pallidum SS14 6333663 YP_001934000.1 CDS dnaZX NC_010741.1 1094677 1096395 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(1094677..1096395) Treponema pallidum subsp. pallidum SS14 6333333 YP_001934001.1 CDS gyrB NC_010741.1 1096454 1098367 R DNA gyrase, subunit B complement(1096454..1098367) Treponema pallidum subsp. pallidum SS14 6333298 YP_001934002.1 CDS thyX NC_010741.1 1098476 1099393 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(1098476..1099393) Treponema pallidum subsp. pallidum SS14 6333303 YP_001934003.1 CDS nrdA NC_010741.1 1099436 1101973 R catalyzes the rate limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1099436..1101973) Treponema pallidum subsp. pallidum SS14 6333342 YP_001934004.1 CDS gpsA NC_010741.1 1102100 1103170 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1102100..1103170) Treponema pallidum subsp. pallidum SS14 6333865 YP_001934005.1 CDS ndk NC_010741.1 1103267 1103716 R nucleoside-diphosphate kinase complement(1103267..1103716) Treponema pallidum subsp. pallidum SS14 6333350 YP_001934006.1 CDS pth NC_010741.1 1103842 1104450 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1103842..1104450) Treponema pallidum subsp. pallidum SS14 6333872 YP_001934007.1 CDS sigA NC_010741.1 1104485 1105420 R RNA polymerase sigma-43 factor complement(1104485..1105420) Treponema pallidum subsp. pallidum SS14 6333850 YP_001934008.1 CDS groES NC_010741.1 1105625 1105891 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1105625..1105891 Treponema pallidum subsp. pallidum SS14 6333859 YP_001934009.1 CDS TPASS_1014 NC_010741.1 1105902 1107836 R hypothetical protein complement(1105902..1107836) Treponema pallidum subsp. pallidum SS14 6333873 YP_001934010.1 CDS nusB NC_010741.1 1107802 1108227 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1107802..1108227) Treponema pallidum subsp. pallidum SS14 6333855 YP_001934011.1 CDS tpn39b NC_010741.1 1108224 1109309 R basic membrane protein complement(1108224..1109309) Treponema pallidum subsp. pallidum SS14 6333864 YP_001934012.1 CDS alaS NC_010741.1 1109382 1111199 R catalyzes a two-step reaction, first charging an alanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1109382..1111199) Treponema pallidum subsp. pallidum SS14 6333337 YP_001934013.1 CDS TPASS_1018 NC_010741.1 1111371 1112885 D hypothetical protein 1111371..1112885 Treponema pallidum subsp. pallidum SS14 6333868 YP_001934014.1 CDS gatC NC_010741.1 1112907 1113350 D glu-tRNA amidotransferase, subunit C 1112907..1113350 Treponema pallidum subsp. pallidum SS14 6333267 YP_001934015.1 CDS gatA NC_010741.1 1113351 1114871 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1113351..1114871 Treponema pallidum subsp. pallidum SS14 6332795 YP_001934016.1 CDS gatB NC_010741.1 1114864 1116393 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1114864..1116393 Treponema pallidum subsp. pallidum SS14 6332792 YP_001934017.1 CDS sms NC_010741.1 1116489 1117856 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1116489..1117856) Treponema pallidum subsp. pallidum SS14 6333348 YP_001934018.1 CDS recX NC_010741.1 1117903 1118397 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(1117903..1118397) Treponema pallidum subsp. pallidum SS14 6333338 YP_001934019.1 CDS rpsI NC_010741.1 1118525 1118914 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(1118525..1118914) Treponema pallidum subsp. pallidum SS14 6333313 YP_001934020.1 CDS rplM NC_010741.1 1118930 1119358 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1118930..1119358) Treponema pallidum subsp. pallidum SS14 6333234 YP_001934021.1 CDS TPASS_1026 NC_010741.1 1119791 1121560 D oligoendopeptidase F 1119791..1121560 Treponema pallidum subsp. pallidum SS14 6333340 YP_001934022.1 CDS udp NC_010741.1 1121682 1122458 D uridine phosphorylase 1121682..1122458 Treponema pallidum subsp. pallidum SS14 6333343 YP_001934023.1 CDS uvrD NC_010741.1 1122474 1124486 R DNA helicase II complement(1122474..1124486) Treponema pallidum subsp. pallidum SS14 6333273 YP_001934024.1 CDS TPASS_1029 NC_010741.1 1124569 1125255 R hypothetical protein complement(1124569..1125255) Treponema pallidum subsp. pallidum SS14 6333264 YP_001934025.1 CDS TPASS_1030 NC_010741.1 1125413 1125772 R hypothetical protein complement(1125413..1125772) Treponema pallidum subsp. pallidum SS14 6333231 YP_001934026.1 CDS tprL NC_010741.1 1125800 1127344 D protein TprL 1125800..1127344 Treponema pallidum subsp. pallidum SS14 6332791 YP_001934027.1 CDS TPASS_1032 NC_010741.1 1127412 1127846 R hypothetical protein complement(1127412..1127846) Treponema pallidum subsp. pallidum SS14 6333263 YP_001934028.1 CDS TPASS_1033 NC_010741.1 1127858 1128793 R hypothetical protein complement(1127858..1128793) Treponema pallidum subsp. pallidum SS14 6333866 YP_001934029.1 CDS TPASS_1034 NC_010741.1 1128867 1129892 D hypothetical protein 1128867..1129892 Treponema pallidum subsp. pallidum SS14 6333278 YP_001934030.1 CDS valS NC_010741.1 1129889 1132759 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1129889..1132759) Treponema pallidum subsp. pallidum SS14 6333341 YP_001934031.1 CDS TPASS_1036 NC_010741.1 1132912 1135290 D cation-transporting ATPase, P-type 1132912..1135290 Treponema pallidum subsp. pallidum SS14 6333259 YP_001934032.1 CDS hlyIII NC_010741.1 1135380 1136096 R hemolysin III complement(1135380..1136096) Treponema pallidum subsp. pallidum SS14 6333314 YP_001934033.1 CDS tpF1 NC_010741.1 1136255 1136788 R bacterioferrin TpF1 complement(1136255..1136788) Treponema pallidum subsp. pallidum SS14 6333279 YP_001934034.1 CDS apt NC_010741.1 1137015 1137587 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1137015..1137587 Treponema pallidum subsp. pallidum SS14 6333312 YP_001934035.1 CDS lysS2 NC_010741.1 1137610 1138665 R lysyl-tRNA synthetase complement(1137610..1138665) Treponema pallidum subsp. pallidum SS14 6333319 YP_001934036.1 CDS clpP NC_010741.1 1138665 1139378 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(1138665..1139378) Treponema pallidum subsp. pallidum SS14 6333309 TPASS_t0001 tRNA TPASS_t0001 NC_010741.1 24335 24422 R tRNA-Ser complement(24335..24422) Treponema pallidum subsp. pallidum SS14 6333128 TPASS_t0002 tRNA TPASS_t0002 NC_010741.1 24479 24567 R tRNA-Ser complement(24479..24567) Treponema pallidum subsp. pallidum SS14 6333767 TPASS_t0003 tRNA TPASS_t0003 NC_010741.1 24625 24698 R tRNA-Arg complement(24625..24698) Treponema pallidum subsp. pallidum SS14 6333126 TPASS_t0004 tRNA TPASS_t0004 NC_010741.1 24730 24816 R tRNA-Ser complement(24730..24816) Treponema pallidum subsp. pallidum SS14 6333764 TPASS_t0005 tRNA TPASS_t0005 NC_010741.1 24857 24941 R tRNA-Ser complement(24857..24941) Treponema pallidum subsp. pallidum SS14 6333765 TPASS_t0006 tRNA TPASS_t0006 NC_010741.1 124897 124967 D tRNA-Gln 124897..124967 Treponema pallidum subsp. pallidum SS14 6332862 TPASS_t0007 tRNA TPASS_t0007 NC_010741.1 124977 125048 D tRNA-Glu 124977..125048 Treponema pallidum subsp. pallidum SS14 6333800 TPASS_t0008 tRNA TPASS_t0008 NC_010741.1 125085 125156 D tRNA-Glu 125085..125156 Treponema pallidum subsp. pallidum SS14 6333794 TPASS_t0009 tRNA TPASS_t0009 NC_010741.1 157789 157861 D tRNA-Val 157789..157861 Treponema pallidum subsp. pallidum SS14 6332865 TPASS_t0010 tRNA TPASS_t0010 NC_010741.1 169132 169213 R tRNA-Leu complement(169132..169213) Treponema pallidum subsp. pallidum SS14 6332901 TPASS_t0011 tRNA TPASS_t0011 NC_010741.1 191075 191147 D tRNA-Met 191075..191147 Treponema pallidum subsp. pallidum SS14 6332823 TPASS_t0012 tRNA TPASS_t0012 NC_010741.1 232944 233017 D tRNA-Ile 232944..233017 Treponema pallidum subsp. pallidum SS14 6333560 TPASS_t0013 tRNA TPASS_t0013 NC_010741.1 243072 243144 D tRNA-Thr 243072..243144 Treponema pallidum subsp. pallidum SS14 6333549 TPASS_t0014 tRNA TPASS_t0014 NC_010741.1 243398 243470 D tRNA-Trp 243398..243470 Treponema pallidum subsp. pallidum SS14 6333550 TPASS_t0015 tRNA TPASS_t0015 NC_010741.1 281377 281450 D tRNA-Ala 281377..281450 Treponema pallidum subsp. pallidum SS14 6333520 TPASS_t0016 tRNA TPASS_t0016 NC_010741.1 352992 353074 R tRNA-Leu complement(352992..353074) Treponema pallidum subsp. pallidum SS14 6333468 TPASS_t0017 tRNA TPASS_t0017 NC_010741.1 355027 355098 R tRNA-Gly complement(355027..355098) Treponema pallidum subsp. pallidum SS14 6333466 TPASS_t0018 tRNA TPASS_t0018 NC_010741.1 396843 396915 D tRNA-Gln 396843..396915 Treponema pallidum subsp. pallidum SS14 6333417 TPASS_t0019 tRNA TPASS_t0019 NC_010741.1 524956 525030 D tRNA-Thr 524956..525030 Treponema pallidum subsp. pallidum SS14 6333674 TPASS_t0020 tRNA TPASS_t0020 NC_010741.1 525040 525121 D tRNA-Tyr 525040..525121 Treponema pallidum subsp. pallidum SS14 6332841 TPASS_t0021 tRNA TPASS_t0021 NC_010741.1 542188 542260 D tRNA-Lys 542188..542260 Treponema pallidum subsp. pallidum SS14 6333716 TPASS_t0022 tRNA TPASS_t0022 NC_010741.1 542320 542400 D tRNA-Leu 542320..542400 Treponema pallidum subsp. pallidum SS14 6333072 TPASS_t0023 tRNA TPASS_t0023 NC_010741.1 542411 542482 D tRNA-Gly 542411..542482 Treponema pallidum subsp. pallidum SS14 6333719 TPASS_t0024 tRNA TPASS_t0024 NC_010741.1 582861 582933 D tRNA-Asn 582861..582933 Treponema pallidum subsp. pallidum SS14 6332922 TPASS_t0025 tRNA TPASS_t0025 NC_010741.1 600217 600288 R tRNA-Cys complement(600217..600288) Treponema pallidum subsp. pallidum SS14 6333107 TPASS_t0026 tRNA TPASS_t0026 NC_010741.1 643604 643676 D tRNA-Arg 643604..643676 Treponema pallidum subsp. pallidum SS14 6333241 TPASS_t0027 tRNA TPASS_t0027 NC_010741.1 643690 643761 R tRNA-Pro complement(643690..643761) Treponema pallidum subsp. pallidum SS14 6333230 TPASS_t0028 tRNA TPASS_t0028 NC_010741.1 643813 643886 R tRNA-Asp complement(643813..643886) Treponema pallidum subsp. pallidum SS14 6333786 TPASS_t0029 tRNA TPASS_t0029 NC_010741.1 643956 644028 R tRNA-Met complement(643956..644028) Treponema pallidum subsp. pallidum SS14 6333122 TPASS_t0030 tRNA TPASS_t0030 NC_010741.1 659744 659817 D tRNA-Arg 659744..659817 Treponema pallidum subsp. pallidum SS14 6333311 TPASS_t0031 tRNA TPASS_t0031 NC_010741.1 698838 698911 R tRNA-Arg complement(698838..698911) Treponema pallidum subsp. pallidum SS14 6333281 TPASS_t0032 tRNA TPASS_t0032 NC_010741.1 698926 698997 R tRNA-His complement(698926..698997) Treponema pallidum subsp. pallidum SS14 6333375 TPASS_t0033 tRNA TPASS_t0033 NC_010741.1 699134 699206 D tRNA-Phe 699134..699206 Treponema pallidum subsp. pallidum SS14 6332903 TPASS_t0034 tRNA TPASS_t0034 NC_010741.1 731298 731370 D tRNA-Pro 731298..731370 Treponema pallidum subsp. pallidum SS14 6333187 TPASS_t0035 tRNA TPASS_t0035 NC_010741.1 735687 735760 D tRNA-Arg 735687..735760 Treponema pallidum subsp. pallidum SS14 6333102 TPASS_t0036 tRNA TPASS_t0036 NC_010741.1 743915 743986 D tRNA-Val 743915..743986 Treponema pallidum subsp. pallidum SS14 6333790 TPASS_t0037 tRNA TPASS_t0037 NC_010741.1 761469 761542 R tRNA-Met complement(761469..761542) Treponema pallidum subsp. pallidum SS14 6333589 TPASS_t0038 tRNA TPASS_t0038 NC_010741.1 768697 768770 D tRNA-Pro 768697..768770 Treponema pallidum subsp. pallidum SS14 6333747 TPASS_t0039 tRNA TPASS_t0039 NC_010741.1 843254 843326 R tRNA-Lys complement(843254..843326) Treponema pallidum subsp. pallidum SS14 6333845 TPASS_t0040 tRNA TPASS_t0040 NC_010741.1 843470 843553 D tRNA-Leu 843470..843553 Treponema pallidum subsp. pallidum SS14 6333219 TPASS_t0041 tRNA TPASS_t0041 NC_010741.1 1004269 1004341 D tRNA-Ala 1004269..1004341 Treponema pallidum subsp. pallidum SS14 6333627 TPASS_t0042 tRNA TPASS_t0042 NC_010741.1 1006879 1006951 R tRNA-Thr complement(1006879..1006951) Treponema pallidum subsp. pallidum SS14 6333047 TPASS_t0043 tRNA TPASS_t0043 NC_010741.1 1018966 1019039 D tRNA-Val 1018966..1019039 Treponema pallidum subsp. pallidum SS14 6332825 TPASS_t0044 tRNA TPASS_t0044 NC_010741.1 1079823 1079908 R tRNA-Leu complement(1079823..1079908) Treponema pallidum subsp. pallidum SS14 6333302 TPASS_t0045 tRNA TPASS_t0045 NC_010741.1 1083955 1084028 R tRNA-Ala complement(1083955..1084028) Treponema pallidum subsp. pallidum SS14 6333300 TPASS_r0001 rRNA rrs1 NC_010741.1 231345 232839 D 16S ribosomal RNA 231345..232839 Treponema pallidum subsp. pallidum SS14 6333559 TPASS_r0002 rRNA rrl1 NC_010741.1 233133 236033 D 23S ribosomal RNA 233133..236033 Treponema pallidum subsp. pallidum SS14 6332809 TPASS_r0003 rRNA rrf1 NC_010741.1 236083 236168 D 5S ribosomal RNA 236083..236168 Treponema pallidum subsp. pallidum SS14 6333019 TPASS_r0004 rRNA rrs2 NC_010741.1 279779 281273 D 16S ribosomal RNA 279779..281273 Treponema pallidum subsp. pallidum SS14 6332800 TPASS_r0005 rRNA rrl2 NC_010741.1 281567 284467 D 23S ribosomal RNA 281567..284467 Treponema pallidum subsp. pallidum SS14 6333522 TPASS_r0006 rRNA rrf2 NC_010741.1 284523 284608 D 5S ribosomal RNA 284523..284608 Treponema pallidum subsp. pallidum SS14 6332799