-- dump date 20111121_015448 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 869209000001 SEQ_END SEQ_END NC_015385.1 2731853 2731853 DR NC_015385.1; contig end 2731853..2731853 Treponema succinifaciens DSM 2489 869209000002 SEQ_END SEQ_END NC_015386.1 165572 165572 DR NC_015386.1; contig end 165572..165572 Treponema succinifaciens DSM 2489 YP_004364268.1 CDS Tresu_0001 NC_015385.1 30 1487 D COGs: COG0593 ATPase involved in DNA replication initiation; HAMAP: Chromosomal replication control, initiator DnaA; InterPro IPR001957:IPR013317:IPR013159:IPR003593; KEGG: ssm:Spirs_0001 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: Chromosomal replication control, initiator DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA; chromosomal replication initiator protein dnaA 30..1487 Treponema succinifaciens DSM 2489 10432705 YP_004364269.1 CDS Tresu_0002 NC_015385.1 1780 2904 D COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR022634:IPR022637:IPR022635:IPR001001; KEGG: tde:TDE0231 DNA polymerase III subunit beta; PFAM: DNA polymerase III, beta chain, central; DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, C-terminal; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III, beta chain; SPTR: DNA polymerase III subunit beta; TIGRFAM: DNA polymerase III, beta chain; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III subunit beta; DNA polymerase III subunit beta 1780..2904 Treponema succinifaciens DSM 2489 10430085 YP_004364270.1 CDS Tresu_0003 NC_015385.1 2922 4043 D COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); InterPro IPR003395:IPR001238; KEGG: tde:TDE0230 DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC; SPTR: DNA replication and repair protein recF; TIGRFAM: DNA-binding, RecF; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein; DNA replication and repair protein RecF 2922..4043 Treponema succinifaciens DSM 2489 10430086 YP_004364271.1 CDS Tresu_0004 NC_015385.1 4040 4582 D InterPro IPR007922; KEGG: ssm:Spirs_0005 protein of unknown function DUF721; PFAM: protein of unknown function DUF721/UPF0232; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF721); hypothetical protein 4040..4582 Treponema succinifaciens DSM 2489 10430087 YP_004364272.1 CDS Tresu_0005 NC_015385.1 4639 4794 D HAMAP: ribosomal protein L34; InterPro IPR000271; KEGG: bga:BG0447 50S ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; 50S ribosomal protein L34 4639..4794 Treponema succinifaciens DSM 2489 10430088 YP_004364273.1 CDS Tresu_0006 NC_015385.1 5195 5392 D COGs: COG0759 conserved hypothetical protein; HAMAP: protein of unknown function DUF37; InterPro IPR002696; KEGG: bth:BT_3228 hypothetical protein; PFAM: protein of unknown function DUF37; SPTR: UPF0161 protein HMPREF9010_00622; TIGRFAM: protein of unknown function DUF37; manually curated; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD; hypothetical protein 5195..5392 Treponema succinifaciens DSM 2489 10430089 YP_004364274.1 CDS Tresu_0007 NC_015385.1 5414 7222 D COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: Membrane insertion protein, OxaA/YidC, bacterial; InterPro IPR019998:IPR001708; KEGG: tde:TDE2396 ATPase AAA inner membrane protein translocase component YidC; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Inner membrane protein oxaA; TIGRFAM: Membrane insertion protein, OxaA/YidC; Membrane insertion protein, OxaA/YidC, bacterial; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain; membrane protein OxaA 5414..7222 Treponema succinifaciens DSM 2489 10430090 YP_004364275.1 CDS Tresu_0008 NC_015385.1 7246 7962 D COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: ssm:Spirs_0009 single-stranded nucleic acid binding R3H domain protein; PFAM: Single-stranded nucleic acid binding R3H; SMART: Single-stranded nucleic acid binding R3H; SPTR: protein jag; PFAM: R3H domain; single-stranded nucleic acid binding R3H domain-containing protein 7246..7962 Treponema succinifaciens DSM 2489 10430091 YP_004364276.1 CDS Tresu_0009 NC_015385.1 7993 8769 D KEGG: tde:TDE2392 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 7993..8769 Treponema succinifaciens DSM 2489 10430092 YP_004364277.1 CDS Tresu_0010 NC_015385.1 8784 9806 D COGs: COG0652 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130:IPR001179; KEGG: tde:TDE2391 peptidyl-prolyl cis-trans isomerase; PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin-type; peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; cyclophilin type peptidyl-prolyl cis-trans isomerase 8784..9806 Treponema succinifaciens DSM 2489 10430093 YP_004364278.1 CDS Tresu_0011 NC_015385.1 10034 10567 D InterPro IPR000182; KEGG: mmp:MMP1184 N-acetyltransferase-like protein; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: N-acetyltransferase related protein; PFAM: Acetyltransferase (GNAT) family; GCN5-related N-acetyltransferase 10034..10567 Treponema succinifaciens DSM 2489 10430094 YP_004364279.1 CDS Tresu_0012 NC_015385.1 10570 11325 D KEGG: tde:TDE0620 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 10570..11325 Treponema succinifaciens DSM 2489 10430095 YP_004364280.1 CDS Tresu_0013 NC_015385.1 11322 12704 R COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524; KEGG: bwe:BcerKBAB4_0496 transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory proteins, gntR family; GntR family transcriptional regulator complement(11322..12704) Treponema succinifaciens DSM 2489 10430096 YP_004364281.1 CDS Tresu_0014 NC_015385.1 12750 13154 R COGs: COG0295 Cytidine deaminase; InterPro IPR002125:IPR006262; KEGG: bpb:bpr_I1556 cytidine deaminase Cdd; PFAM: CMP/dCMP deaminase, zinc-binding; PRIAM: Cytidine deaminase; SPTR: Cytidine deaminase; TIGRFAM: Cytidine deaminase, homotetrameric; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric; cytidine deaminase complement(12750..13154) Treponema succinifaciens DSM 2489 10430097 YP_004364282.1 CDS Tresu_0015 NC_015385.1 13154 13465 R COGs: COG1534 RNA-binding protein containing KH domain possibly ribosomal protein; InterPro IPR001890; KEGG: hau:Haur_3572 hypothetical protein; PFAM: RNA-binding, CRM domain; SPTR: Putative uncharacterized protein; PFAM: CRS1 / YhbY (CRM) domain; TIGRFAM: ATPase AAA RNA-binding protein, YhbY family; hypothetical protein complement(13154..13465) Treponema succinifaciens DSM 2489 10430098 YP_004364283.1 CDS Tresu_0016 NC_015385.1 13497 14246 R InterPro IPR014127; KEGG: pmz:HMPREF0659_A5225 conserved hypothetical protein TIGR02757; PFAM: Conserved hypothetical protein CHP02757; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02757; PFAM: protein of unknown function (DUF2400); TIGRFAM: TIGR02757 family protein; hypothetical protein complement(13497..14246) Treponema succinifaciens DSM 2489 10430099 YP_004364284.1 CDS Tresu_0017 NC_015385.1 14452 14826 D hypothetical protein 14452..14826 Treponema succinifaciens DSM 2489 10430100 YP_004364285.1 CDS Tresu_0018 NC_015385.1 14879 16198 D COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR002474:IPR000991:IPR006274; KEGG: eel:EUBELI_20411 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; glutamine amidotransferase class-I, C-terminal; PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: Carbamoyl-phosphate synthase, small subunit; TIGRFAM: Carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit 14879..16198 Treponema succinifaciens DSM 2489 10430101 YP_004364286.1 CDS Tresu_0019 NC_015385.1 16260 20495 D COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); HAMAP: Diaminopimelate epimerase; InterProIPR001653:IPR005481:IPR005479:IPR005480:IPR 011607:IPR006275; KEGG: elm:ELI_3885 carbamoyl-phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; methylglyoxal synthase-like domain; Diaminopimelate epimerase; PRIAM: Carbamoyl-phosphate synthase (ammonia)., Diaminopimelate epimerase; SMART: methylglyoxal synthase-like domain; SPTR: Putative uncharacterized protein; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; Diaminopimelate epimerase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; carbamoyl-phosphate synthase, large subunit; diaminopimelate epimerase 16260..20495 Treponema succinifaciens DSM 2489 10430102 YP_004364287.1 CDS Tresu_0020 NC_015385.1 20569 22464 R COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: tde:TDE0850 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; SPTR: methyl-accepting chemotaxis protein; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer complement(20569..22464) Treponema succinifaciens DSM 2489 10430103 YP_004364288.1 CDS Tresu_0021 NC_015385.1 22568 24772 R InterPro IPR019934; KEGG: tde:TDE1580 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03545; TIGRFAM: TIGR03545 family protein; hypothetical protein complement(22568..24772) Treponema succinifaciens DSM 2489 10430104 YP_004364289.1 CDS Tresu_0022 NC_015385.1 24769 25290 R InterPro IPR019935; KEGG: ssm:Spirs_0913 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03546; TIGRFAM: TIGR03546 family protein; hypothetical protein complement(24769..25290) Treponema succinifaciens DSM 2489 10430105 YP_004364290.1 CDS Tresu_0023 NC_015385.1 25526 26461 D COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR015168; KEGG: ssm:Spirs_3152 NMT1/THI5 like domain protein; SPTR: NMT1/THI5 like domain protein; PFAM: NMT1/THI5 like; NMT1/THI5 like domain-containing protein 25526..26461 Treponema succinifaciens DSM 2489 10430107 YP_004364291.1 CDS Tresu_0024 NC_015385.1 26454 27917 D COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR000515:IPR003439:IPR003593; KEGG: pdi:BDI_1370 ATPase AAA ABC transporter; PFAM: ABC transporter-like; Binding-protein-dependent transport systems inner membrane component; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: ABC transporter; ABC transporter 26454..27917 Treponema succinifaciens DSM 2489 10430108 YP_004364292.1 CDS Tresu_0025 NC_015385.1 27958 29430 D COGs: COG0063 sugar kinase; InterPro IPR004443:IPR000631; KEGG: ant:Arnit_0316 carbohydrate kinase; PFAM: YjeF-related protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related; SPTR: Preprotein translocase, YajC subunit; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: Carbohydrate kinase; YjeF-related protein N-terminus; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region; hypothetical protein 27958..29430 Treponema succinifaciens DSM 2489 10430109 YP_004364293.1 CDS Tresu_0026 NC_015385.1 29452 29820 D COGs: COG1380 Putative effector of murein hydrolase LrgA; InterPro IPR005538; KEGG: eel:EUBELI_00436 holin-like protein; PFAM: Uncharacterised protein family LrgA/YohJ; SPTR: Putative uncharacterized protein; PFAM: LrgA family; LrgA family protein 29452..29820 Treponema succinifaciens DSM 2489 10430110 YP_004364294.1 CDS Tresu_0027 NC_015385.1 29823 30518 D COGs: COG1346 Putative effector of murein hydrolase; InterPro IPR007300; KEGG: cpy:Cphy_0707 LrgB family protein; PFAM: LrgB-like protein; SPTR: Putative effector of murein hydrolase; PFAM: LrgB-like family; TIGRFAM: TIGR00659 family protein; LrgB family protein 29823..30518 Treponema succinifaciens DSM 2489 10430111 YP_004364295.1 CDS Tresu_0028 NC_015385.1 30651 31484 D COGs: COG0263 glutamate 5-kinase; HAMAP: glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; InterPro IPR005715:IPR001048; KEGG: amt:Amet_3645 glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: glutamate 5-kinase; TIGRFAM: glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: Amino acid kinase family; TIGRFAM: glutamate 5-kinase; glutamate 5-kinase 30651..31484 Treponema succinifaciens DSM 2489 10430112 YP_004364296.1 CDS Tresu_0029 NC_015385.1 31481 32260 D COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR004455:IPR000304; KEGG: cpy:Cphy_2914 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: Pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 31481..32260 Treponema succinifaciens DSM 2489 10430113 YP_004364297.1 CDS Tresu_0030 NC_015385.1 32263 33084 R COGs: COG3393 acetyltransferase; InterPro IPR000182; KEGG: tde:TDE0023 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Acetyltransferase, GNAT family; PFAM: FR47-like protein; GCN5-related N-acetyltransferase complement(32263..33084) Treponema succinifaciens DSM 2489 10430114 YP_004364298.1 CDS Tresu_0031 NC_015385.1 33087 34505 R COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: tde:TDE0621 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein; SPTR: Mate efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: ATPase AAA efflux protein, MATE family; MATE efflux family protein complement(33087..34505) Treponema succinifaciens DSM 2489 10430115 YP_004364299.1 CDS Tresu_0032 NC_015385.1 34525 35991 D COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: tde:TDE1992 OmpA family protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA family protein; PFAM: OmpA family; OmpA/MotB domain-containing protein 34525..35991 Treponema succinifaciens DSM 2489 10430116 YP_004364300.1 CDS Tresu_0033 NC_015385.1 35997 36467 D COGs: COG0394 protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: clj:CLJU_c14630 low molecular weight protein-tyrosine-phosphatase; PFAM: protein-tyrosine phosphatase, low molecular weight; PRIAM: Acid phosphatase; SMART: protein-tyrosine phosphatase, low molecular weight; SPTR: protein-tyrosine-phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 35997..36467 Treponema succinifaciens DSM 2489 10430117 YP_004364301.1 CDS Tresu_0034 NC_015385.1 36555 37472 D COGs: COG0583 Transcriptional regulator; InterPro IPR000847; KEGG: fsu:Fisuc_1099 transcriptional regulator, LysR family; PFAM: HTH transcriptional regulator, LysR; SPTR: Putative uncharacterized protein; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; LysR family transcriptional regulator 36555..37472 Treponema succinifaciens DSM 2489 10430118 YP_004364302.1 CDS Tresu_0035 NC_015385.1 37581 38861 D COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterPro IPR000277:IPR006235; KEGG: bpb:bpr_I2467 OAH/OAS sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cysteine synthase; SPTR: O-acetylhomoserine sulfhydrolase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase; O-acetylhomoserine/O-acetylserine sulfhydrylase 37581..38861 Treponema succinifaciens DSM 2489 10430119 YP_004364303.1 CDS Tresu_0036 NC_015385.1 39026 39904 D COGs: COG0214 Pyridoxine biosynthesis enzyme; HAMAP: Vitamin B6 biosynthesis protein; InterPro IPR001852; KEGG: ere:EUBREC_2951 pyridoxal biosynthesis lyase PdxS; PFAM: Vitamin B6 biosynthesis protein; SPTR: Pyridoxal biosynthesis lyase pdxS; TIGRFAM: Vitamin B6 biosynthesis protein; PFAM: SOR/SNZ family; TIGRFAM: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1; pyridoxal biosynthesis lyase pdxS 39026..39904 Treponema succinifaciens DSM 2489 10430120 YP_004364304.1 CDS Tresu_0037 NC_015385.1 39901 40458 D COGs: COG0311 glutamine amidotransferase involved in pyridoxine biosynthesis; InterPro IPR002161; KEGG: dhd:Dhaf_1078 glutamine amidotransferase subunit PdxT; PFAM: glutamine amidotransferase subunit PdxT; SPTR: glutamine amidotransferase subunit pdxT; TIGRFAM: glutamine amidotransferase subunit PdxT; PFAM: SNO glutamine amidotransferase family; TIGRFAM: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2; pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 39901..40458 Treponema succinifaciens DSM 2489 10430121 YP_004364305.1 CDS Tresu_0038 NC_015385.1 40468 42009 R COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: cac:CA_C3316 cardiolipin synthase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; SPTR: Putative uncharacterized protein; PFAM: phospholipase D Active site motif; phospholipase D/Transphosphatidylase complement(40468..42009) Treponema succinifaciens DSM 2489 10430122 YP_004364306.1 CDS Tresu_0039 NC_015385.1 42203 46144 D COGs: COG0046 phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR010918:IPR010141; KEGG: tjr:TherJR_0822 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase-related protein, C-terminal; PRIAM: phosphoribosylformylglycinamidine synthase; SPTR: phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, FGAM; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase, clade II; phosphoribosylformylglycinamidine synthase 42203..46144 Treponema succinifaciens DSM 2489 10430123 YP_004364307.1 CDS Tresu_0040 NC_015385.1 46161 47144 D KEGG: amu:Amuc_0147 thioredoxin domain; SPTR: Putative lipoprotein; hypothetical protein 46161..47144 Treponema succinifaciens DSM 2489 10430124 YP_004364308.1 CDS Tresu_0041 NC_015385.1 47144 48418 D COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: cno:NT01CX_1509 integral membrane protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SPTR: Integral membrane protein with CBS domains; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; hypothetical protein 47144..48418 Treponema succinifaciens DSM 2489 10430125 YP_004364309.1 CDS Tresu_0042 NC_015385.1 48415 49680 D COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: aar:Acear_0620 protein of unknown function DUF21; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core; SPTR: Hemolysins and related proteins containing CBS domains; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; hypothetical protein 48415..49680 Treponema succinifaciens DSM 2489 10430126 YP_004364310.1 CDS Tresu_0043 NC_015385.1 49675 50325 R KEGG: bpo:BP951000_2108 ATPase AAA cytidylate kinase; SPTR: Cytidylate kinase; cytidylate kinase complement(49675..50325) Treponema succinifaciens DSM 2489 10430127 YP_004364311.1 CDS Tresu_0044 NC_015385.1 50395 51141 R COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: tde:TDE2576 RNA pseudouridylate synthase family protein; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: ribosomal large subunit pseudouridine synthase D; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; pseudouridine synthase complement(50395..51141) Treponema succinifaciens DSM 2489 10430128 YP_004364312.1 CDS Tresu_0045 NC_015385.1 51186 51956 R COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: cdl:CDR20291_2832 ATPase AAA iron ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Putative iron ABC transporter, ATP-binding protein; PFAM: ABC transporter; iron-chelate-transporting ATPase complement(51186..51956) Treponema succinifaciens DSM 2489 10430129 YP_004364313.1 CDS Tresu_0046 NC_015385.1 51944 52912 R COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: aar:Acear_0769 transport system permease protein; PFAM: ABC transporter permease protein; SPTR: Transport system permease protein; PFAM: FecCD transport family; ABC transporter permease complement(51944..52912) Treponema succinifaciens DSM 2489 10430130 YP_004364314.1 CDS Tresu_0047 NC_015385.1 52921 53763 R COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: hau:Haur_1056 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: Periplasmic binding protein; PFAM: Periplasmic binding protein; ABC transporter substrate-binding protein complement(52921..53763) Treponema succinifaciens DSM 2489 10430131 YP_004364315.1 CDS Tresu_0048 NC_015385.1 53764 54450 R COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR000836:IPR004467; KEGG: csh:Closa_1601 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Putative uncharacterized protein; TIGRFAM: Orotate phosphoribosyl transferase, clade 1; PFAM: phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase; orotate phosphoribosyltransferase complement(53764..54450) Treponema succinifaciens DSM 2489 10430132 YP_004364316.1 CDS Tresu_0049 NC_015385.1 54538 56964 R COGs: COG3459 Cellobiose phosphorylase; InterPro IPR009342:IPR010383:IPR010403; KEGG: ote:Oter_2310 glycosyltransferase 36; PFAM: glycosyltransferase 36; Putative carbohydrate binding; glycosyltransferase 36 associated; SPTR: glycosyltransferase 36; PFAM: glycosyltransferase family 36; Putative carbohydrate binding domain; glycosyltransferase 36 associated family; glycosyltransferase complement(54538..56964) Treponema succinifaciens DSM 2489 10430133 YP_004364317.1 CDS Tresu_0050 NC_015385.1 57247 58551 D COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: sta:STHERM_c18530 multiple sugar binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Multiple sugar binding protein; PFAM: Bacterial extracellular solute-binding protein; extracellular solute-binding protein 57247..58551 Treponema succinifaciens DSM 2489 10430134 YP_004364318.1 CDS Tresu_0051 NC_015385.1 58653 59612 D COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: tpd:Teth39_2057 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Sugar ABC transporter permease; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease 58653..59612 Treponema succinifaciens DSM 2489 10430135 YP_004364319.1 CDS Tresu_0052 NC_015385.1 59628 60467 D COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: pjd:Pjdr2_5596 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease 59628..60467 Treponema succinifaciens DSM 2489 10430136 YP_004364320.1 CDS Tresu_0053 NC_015385.1 60492 62087 D COGs: COG3507 beta-xylosidase; InterPro IPR006710; KEGG: sta:STHERM_c18500 beta-xylosidase; PFAM: glycoside hydrolase, family 43; PRIAM: xylan 1,4-beta-xylosidase; SPTR: beta-xylosidase; PFAM: glycosyl hydrolases family 43; xylan 1,4-beta-xylosidase 60492..62087 Treponema succinifaciens DSM 2489 10430137 YP_004364321.1 CDS Tresu_0054 NC_015385.1 62207 63220 D COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: eat:EAT1b_2179 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Alanine racemase; PFAM: Bacterial regulatory proteins, lacI family; family; LacI family transcriptional regulator 62207..63220 Treponema succinifaciens DSM 2489 10430138 YP_004364322.1 CDS Tresu_0055 NC_015385.1 63386 63697 D COGs: COG0718 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0133; InterPro IPR004401; KEGG: aar:Acear_0031 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: UPF0133 protein TREVI0001_0080; TIGRFAM: Uncharacterised protein family UPF0133; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family; hypothetical protein 63386..63697 Treponema succinifaciens DSM 2489 10430140 YP_004364323.1 CDS Tresu_0056 NC_015385.1 63701 64288 D COGs: COG0353 Recombinational DNA repair protein (RecF pathway); HAMAP: RecR protein; InterPro IPR000093:IPR015967:IPR006171; KEGG: ssm:Spirs_0086 recombination protein RecR; PFAM: Toprim domain; Zinc finger C4-type, RecR; SMART: Toprim domain; SPTR: Recombination protein RecR; TIGRFAM: RecR protein; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR; Recombination protein recR 63701..64288 Treponema succinifaciens DSM 2489 10430141 YP_004364324.1 CDS Tresu_0057 NC_015385.1 64344 65312 D hypothetical protein 64344..65312 Treponema succinifaciens DSM 2489 10430142 YP_004364325.1 CDS Tresu_0058 NC_015385.1 65309 67213 D KEGG: tde:TDE0867 hypothetical protein; SPTR: Putative lipoprotein; hypothetical protein 65309..67213 Treponema succinifaciens DSM 2489 10430143 YP_004364326.1 CDS Tresu_0059 NC_015385.1 67210 68478 R COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: geo:Geob_0885 STE24 endopeptidase; PFAM: peptidase M48; PRIAM: Ste24 endopeptidase; SPTR: Ste24 endopeptidase; PFAM: peptidase family M48; Ste24 endopeptidase complement(67210..68478) Treponema succinifaciens DSM 2489 10430144 YP_004364327.1 CDS Tresu_0060 NC_015385.1 68475 69137 R COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; HAMAP: rRNA small subunit methyltransferase G; InterPro IPR003682; KEGG: tde:TDE2513 glucose-inhibited division protein B; PFAM: rRNA small subunit methyltransferase G; SPTR: ribosomal RNA small subunit methyltransferase G; TIGRFAM: rRNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB; ribosomal RNA small subunit methyltransferase G complement(68475..69137) Treponema succinifaciens DSM 2489 10430145 YP_004364328.1 CDS Tresu_0061 NC_015385.1 69140 70024 R SPTR: Putative uncharacterized protein; hypothetical protein complement(69140..70024) Treponema succinifaciens DSM 2489 10430146 YP_004364329.1 CDS Tresu_0062 NC_015385.1 70011 70820 R KEGG: tde:TDE0304 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(70011..70820) Treponema succinifaciens DSM 2489 10430147 YP_004364330.1 CDS Tresu_0063 NC_015385.1 71082 72047 D COGs: COG1281 Disulfide bond chaperones of the HSP33 family; InterPro IPR000397; KEGG: tde:TDE2554 heat shock protein 34; PFAM: Heat shock protein Hsp33 protein; SPTR: Chaperonin, 33 kDa family; PFAM: Hsp33 protein; Hsp33 protein 71082..72047 Treponema succinifaciens DSM 2489 10430148 YP_004364331.1 CDS Tresu_0064 NC_015385.1 72308 73762 D COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: tpp:TPASS_0277 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF; SMART: peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxy--processing protease; TIGRFAM: peptidase S41A, C-terminal peptidase; PFAM: peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); carboxyl-terminal protease 72308..73762 Treponema succinifaciens DSM 2489 10430149 YP_004364332.1 CDS Tresu_0065 NC_015385.1 73759 74568 D COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: tde:TDE1877 16S ribosomal RNA methyltransferase RsmE; PFAM: ribosomal RNA small subunit methyltransferase E; SPTR: RNA methyltransferase family protein; TIGRFAM: ribosomal RNA small subunit methyltransferase E; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family; ribosomal RNA small subunit methyltransferase E 73759..74568 Treponema succinifaciens DSM 2489 10430150 YP_004364333.1 CDS Tresu_0066 NC_015385.1 74570 75310 D COGs: COG1922 Teichoic acid biosynthesis protein; InterPro IPR004629; KEGG: tde:TDE1876 WecB/TagA/CpsF family glycosyl transferase; PFAM: glycosyl transferase WecB/TagA/CpsF; SPTR: glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase WecB/TagA/CpsF; PFAM: glycosyl transferase WecB/TagA/CpsF family; TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family; WecB/TagA/CpsF family glycosyl transferase 74570..75310 Treponema succinifaciens DSM 2489 10430151 YP_004364334.1 CDS Tresu_0067 NC_015385.1 75317 76378 D COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078:IPR003593; KEGG: tye:THEYE_A1802 SasR; PFAM: RNA polymerase sigma factor 54, interaction; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: Sigma-54 interaction domain; sigma-54 interacting domain-containing protein 75317..76378 Treponema succinifaciens DSM 2489 10430152 YP_004364335.1 CDS Tresu_0068 NC_015385.1 76365 77093 R COGs: COG0565 rRNA methylase; InterPro IPR001537; KEGG: ssm:Spirs_2304 RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: RNA methyltransferase, TrmH family, group 1; PFAM: SpoU rRNA methylase family; TIGRFAM: RNA methyltransferase, TrmH family, group 1; tRNA/rRNA methyltransferase SpoU complement(76365..77093) Treponema succinifaciens DSM 2489 10430153 YP_004364336.1 CDS Tresu_0069 NC_015385.1 77106 77654 R COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645:IPR003658; KEGG: ssm:Spirs_0140 anti-sigma-factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; anti-sigma-factor antagonist complement(77106..77654) Treponema succinifaciens DSM 2489 10430154 YP_004364337.1 CDS Tresu_0070 NC_015385.1 77845 79158 D COGs: COG0141 histidinol dehydrogenase; HAMAP: histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: cdl:CDR20291_1479 histidinol dehydrogenase; PFAM: histidinol dehydrogenase, prokaryotic-type; PRIAM: histidinol dehydrogenase; SPTR: histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase, prokaryotic-type; PFAM: histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; histidinol dehydrogenase 77845..79158 Treponema succinifaciens DSM 2489 10430155 YP_004364338.1 CDS Tresu_0071 NC_015385.1 79178 79756 D COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: ssm:Spirs_1654 peptide deformylase; PFAM: Formylmethionine deformylase; SPTR: peptide deformylase 1; TIGRFAM: Formylmethionine deformylase; PFAM: polypeptide deformylase; TIGRFAM: peptide deformylase; peptide deformylase 79178..79756 Treponema succinifaciens DSM 2489 10430156 YP_004364339.1 CDS Tresu_0072 NC_015385.1 79757 80770 D COGs: COG0223 methionyl-tRNA formyltransferase; HAMAP: methionyl-tRNA formyltransferase; InterPro IPR005794:IPR002376:IPR005793; KEGG: tde:TDE1644 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, C-terminal; Formyl transferase, N-terminal; PRIAM: methionyl-tRNA formyltransferase; SPTR: methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 79757..80770 Treponema succinifaciens DSM 2489 10430157 YP_004364340.1 CDS Tresu_0073 NC_015385.1 80774 81805 D COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: tde:TDE1643 PASTA domain-containing protein; PFAM: PASTA; SMART: PASTA; SPTR: PASTA domain protein; PFAM: PASTA domain; PASTA domain-containing protein 80774..81805 Treponema succinifaciens DSM 2489 10430158 YP_004364341.1 CDS Tresu_0074 NC_015385.1 81993 83339 R COGs: COG0282 Acetate kinase; HAMAP: Acetate kinase; InterPro IPR004372:IPR000890; KEGG: tpp:TPASS_0476 acetate kinase; PFAM: Acetate/butyrate kinase; PRIAM: Acetate kinase; SPTR: Acetate kinase; TIGRFAM: Acetate kinase; PFAM: Acetokinase family; TIGRFAM: acetate kinase; Acetate kinase complement(81993..83339) Treponema succinifaciens DSM 2489 10430159 YP_004364342.1 CDS Tresu_0075 NC_015385.1 83488 84591 D COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); KEGG: sta:STHERM_c01250 ATPase AAA leucyl aminopeptidase; SPTR: Putative leucyl aminopeptidase; PFAM: Thermophilic metalloprotease (M29); leucyl aminopeptidase 83488..84591 Treponema succinifaciens DSM 2489 10430160 YP_004364343.1 CDS Tresu_0076 NC_015385.1 84596 85438 R COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: cch:Cag_1079 ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component; PFAM: ABC transporter; ABC transporter complement(84596..85438) Treponema succinifaciens DSM 2489 10430161 YP_004364344.1 CDS Tresu_0077 NC_015385.1 85512 87578 D KEGG: cpy:Cphy_0874 hypothetical protein; PRIAM: alpha-L-fucosidase; SPTR: Putative uncharacterized protein; alpha-L-fucosidase 85512..87578 Treponema succinifaciens DSM 2489 10430162 YP_004364345.1 CDS Tresu_0078 NC_015385.1 87636 88559 D COGs: COG0540 aspartate carbamoyltransferase catalytic chain; HAMAP: aspartate carbamoyltransferase, eukaryotic; InterPro IPR002082:IPR006132:IPR006131; KEGG: cbk:CLL_A2581 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; PRIAM: aspartate carbamoyltransferase; SPTR: aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase, eukaryotic; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; aspartate carbamoyltransferase 87636..88559 Treponema succinifaciens DSM 2489 10430163 YP_004364346.1 CDS Tresu_0079 NC_015385.1 88559 88996 D COGs: COG1781 aspartate carbamoyltransferase regulatory subunit; InterPro IPR020545; KEGG: cbf:CLI_3379 aspartate carbamoyltransferase regulatory subunit; PFAM: aspartate carbamoyltransferase regulatory subunit, N-terminal; SPTR: aspartate carbamoyltransferase regulatory chain; PFAM: aspartate carbamoyltransferase regulatory chain, metal binding domain; aspartate carbamoyltransferase regulatory chain, allosteric domain; TIGRFAM: aspartate carbamoyltransferase, regulatory subunit; aspartate carbamoyltransferase regulatory subunit 88559..88996 Treponema succinifaciens DSM 2489 10430164 YP_004364347.1 CDS Tresu_0080 NC_015385.1 89222 90199 R COGs: COG0502 Biotin synthase; HAMAP: Biotin synthase; InterPro IPR002684:IPR007197:IPR010722:IPR006638; KEGG: cno:NT01CX_1470 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; Biotin/thiamin synthesis-associated protein; SPTR: Biotin synthase; TIGRFAM: Biotin synthase; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase; biotin synthase complement(89222..90199) Treponema succinifaciens DSM 2489 10430165 YP_004364348.1 CDS Tresu_0081 NC_015385.1 90192 90881 R KEGG: lsp:Bsph_4585 cobalt import ATP-binding/permease protein; SPTR: YbaF; PFAM: Cobalt transport protein; hypothetical protein complement(90192..90881) Treponema succinifaciens DSM 2489 10430166 YP_004364349.1 CDS Tresu_0082 NC_015385.1 90872 91588 R COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: tde:TDE1650 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter; polyamine-transporting ATPase complement(90872..91588) Treponema succinifaciens DSM 2489 10430167 YP_004364350.1 CDS Tresu_0083 NC_015385.1 91592 92164 R COGs: COG1268 conserved hypothetical protein; InterPro IPR003784; KEGG: tde:TDE1651 BioY family protein; PFAM: BioY protein; SPTR: BioY family protein; PFAM: BioY family; BioY protein complement(91592..92164) Treponema succinifaciens DSM 2489 10430168 YP_004364351.1 CDS Tresu_0084 NC_015385.1 92332 92922 R hypothetical protein complement(92332..92922) Treponema succinifaciens DSM 2489 10430169 YP_004364352.1 CDS Tresu_0085 NC_015385.1 93052 93993 R COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR013196:IPR004143:IPR004408; KEGG: dal:Dalk_0376 biotin/acetyl-CoA-carboxylase ligase; SPTR: Putative uncharacterized protein; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: HTH domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; BirA biotin operon repressor domain; biotin-(acetyl-CoA carboxylase) ligase complement(93052..93993) Treponema succinifaciens DSM 2489 10430170 YP_004364353.1 CDS Tresu_0086 NC_015385.1 94030 94923 R COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: fsu:Fisuc_1883 transcriptional regulator, LysR family; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; SPTR: LysR transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; LysR family transcriptional regulator complement(94030..94923) Treponema succinifaciens DSM 2489 10430171 YP_004364354.1 CDS Tresu_0087 NC_015385.1 95021 95314 D KEGG: ele:Elen_0955 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 95021..95314 Treponema succinifaciens DSM 2489 10430172 YP_004364355.1 CDS Tresu_0088 NC_015385.1 95311 95562 D SPTR: Lysophospholipase L1 and related esterases; hypothetical protein 95311..95562 Treponema succinifaciens DSM 2489 10430173 YP_004364356.1 CDS Tresu_0089 NC_015385.1 95590 95868 D hypothetical protein 95590..95868 Treponema succinifaciens DSM 2489 10430174 YP_004364357.1 CDS Tresu_0090 NC_015385.1 95865 96884 R COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: rsd:TGRD_070 2-dehydro-3-deoxygluconokinase; PFAM: Carbohydrate/purine kinase; SPTR: Putative uncharacterized protein; PFAM: pfkB family carbohydrate kinase; PfkB domain-containing protein complement(95865..96884) Treponema succinifaciens DSM 2489 10430175 YP_004364358.1 CDS Tresu_0092 NC_015385.1 98404 99330 D InterPro IPR000620; KEGG: cbe:Cbei_3435 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family; hypothetical protein 98404..99330 Treponema succinifaciens DSM 2489 10430177 YP_004364359.1 CDS Tresu_0093 NC_015385.1 99364 100854 R COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR006004; KEGG: tde:TDE0407 ATPase AAA oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: glutamate synthase (NADPH); SPTR: glutamate synthase (NADPH), homotetrameric; TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric; glutamate synthase (NADPH), homotetrameric complement(99364..100854) Treponema succinifaciens DSM 2489 10430178 YP_004364360.1 CDS Tresu_0094 NC_015385.1 100873 101700 R COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR001433:IPR019480; KEGG: tde:TDE0408 ferredoxin-NADP(+) reductase subunit alpha; PFAM: Oxidoreductase FAD/NAD(P)-binding; dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR: Oxidoreductase, NAD-binding; PFAM: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(100873..101700) Treponema succinifaciens DSM 2489 10430179 YP_004364361.1 CDS Tresu_0095 NC_015385.1 101856 102830 R hypothetical protein complement(101856..102830) Treponema succinifaciens DSM 2489 10430180 YP_004364362.1 CDS Tresu_0096 NC_015385.1 103179 104657 R COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterPro IPR001450:IPR004108; KEGG: tde:TDE1277 Fe-hydrogenase large subunit family protein; PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S binding domain; PRIAM: Ferredoxin hydrogenase; SPTR: Fe-hydrogenase large subunit family protein; PFAM: Iron only hydrogenase large subunit, C-terminal domain; 4Fe-4S binding domain; ferredoxin hydrogenase complement(103179..104657) Treponema succinifaciens DSM 2489 10430181 YP_004364363.1 CDS Tresu_0097 NC_015385.1 104925 105605 R COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: sth:STH1511 magnesium transporter; PFAM: MgtC/SapB transporter; SPTR: Magnesium transporter; PFAM: MgtC family; MgtC/SapB transporter complement(104925..105605) Treponema succinifaciens DSM 2489 10430182 YP_004364364.1 CDS Tresu_0098 NC_015385.1 105618 106508 R KEGG: tde:TDE2545 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(105618..106508) Treponema succinifaciens DSM 2489 10430183 YP_004364365.1 CDS Tresu_0100 NC_015385.1 107999 108787 D KEGG: tdn:Suden_0238 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 107999..108787 Treponema succinifaciens DSM 2489 10430185 YP_004364366.1 CDS Tresu_0101 NC_015385.1 108953 110629 D COGs: COG0433 ATPase; InterPro IPR002789; KEGG: tdn:Suden_0239 hypothetical protein; PFAM: Domain of unknown function DUF87; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF87; Bacterial protein of unknown function (DUF853); hypothetical protein 108953..110629 Treponema succinifaciens DSM 2489 10430186 YP_004364367.1 CDS Tresu_0102 NC_015385.1 110981 112372 D COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: elm:ELI_2729 hypothetical protein; PFAM: Multi antimicrobial extrusion protein; SPTR: Putative uncharacterized protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: ATPase AAA efflux protein, MATE family; MATE efflux family protein 110981..112372 Treponema succinifaciens DSM 2489 10430187 YP_004364368.1 CDS Tresu_0103 NC_015385.1 112488 113084 R KEGG: ddf:DEFDS_0878 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(112488..113084) Treponema succinifaciens DSM 2489 10430188 YP_004364369.1 CDS Tresu_0104 NC_015385.1 113120 113800 R KEGG: bvu:BVU_3427 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(113120..113800) Treponema succinifaciens DSM 2489 10430189 YP_004364370.1 CDS Tresu_0105 NC_015385.1 113854 114864 R KEGG: apr:Apre_0032 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(113854..114864) Treponema succinifaciens DSM 2489 10430190 YP_004364371.1 CDS Tresu_0106 NC_015385.1 115019 116149 D COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: ssb:SSUBM407_0724 transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: Transposase IS116/IS110/IS902 family protein; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein 115019..116149 Treponema succinifaciens DSM 2489 10430191 YP_004364372.1 CDS Tresu_0107 NC_015385.1 116612 117544 R KEGG: mpe:MYPE9810 hypothetical protein; SPTR: Putative uncharacterized protein MYPE9810; hypothetical protein complement(116612..117544) Treponema succinifaciens DSM 2489 10430192 YP_004364373.1 CDS Tresu_0108 NC_015385.1 117528 119669 R InterPro IPR018310; KEGG: mpe:MYPE9820 hypothetical protein; PFAM: Putative endonuclease, Z1 domain; SPTR: Putative uncharacterized protein MYPE9820; PFAM: Z1 domain; endonuclease, Z1 domain-containing protein complement(117528..119669) Treponema succinifaciens DSM 2489 10430193 YP_004364374.1 CDS Tresu_0109 NC_015385.1 119672 121222 R KEGG: mpe:MYPE9830 hypothetical protein; SPTR: Putative uncharacterized protein MYPE9830; hypothetical protein complement(119672..121222) Treponema succinifaciens DSM 2489 10430194 YP_004364375.1 CDS Tresu_0110 NC_015385.1 121222 122622 R COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: pmz:HMPREF0659_A7336 ATPase AAA modification methylase HhaI; PFAM: C-5 cytosine methyltransferase; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: C-5 cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA-cytosine methyltransferase complement(121222..122622) Treponema succinifaciens DSM 2489 10430195 YP_004364376.1 CDS Tresu_0111 NC_015385.1 122785 123915 R COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein complement(122785..123915) Treponema succinifaciens DSM 2489 10430196 YP_004364377.1 CDS Tresu_0112 NC_015385.1 124110 124751 R KEGG: acl:ACL_1058 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(124110..124751) Treponema succinifaciens DSM 2489 10430197 YP_004364378.1 CDS Tresu_0115 NC_015385.1 125383 125709 R KEGG: cdl:CDR20291_3072 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(125383..125709) Treponema succinifaciens DSM 2489 10430200 YP_004364379.1 CDS Tresu_0116 NC_015385.1 125738 126148 R COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: ere:EUBREC_1223 ATPase AAA DNA-binding protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; SPTR: Putative uncharacterized protein; PFAM: Dinitrogenase iron-molybdenum cofactor; dinitrogenase iron-molybdenum cofactor biosynthesis protein complement(125738..126148) Treponema succinifaciens DSM 2489 10430201 YP_004364380.1 CDS Tresu_0117 NC_015385.1 126303 126959 R COGs: COG2315 conserved hypothetical protein; InterPro IPR007351; KEGG: fnu:FN0897 ATPase AAA cytoplasmic protein; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF419); hypothetical protein complement(126303..126959) Treponema succinifaciens DSM 2489 10430202 YP_004364381.1 CDS Tresu_0118 NC_015385.1 127210 129123 D COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: lic:LIC11434 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ATPase component of ABC transporter; PFAM: ABC transporter; ABC transporter 127210..129123 Treponema succinifaciens DSM 2489 10430204 YP_004364382.1 CDS Tresu_0119 NC_015385.1 129157 129885 D COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; InterPro IPR003000; KEGG: cpf:CPF_0249 NAD-dependent deacetylase; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: NAD-dependent protein deacetylases, SIR2 family; PFAM: Sir2 family; NAD-dependent deacetylase 129157..129885 Treponema succinifaciens DSM 2489 10430205 YP_004364383.1 CDS Tresu_0120 NC_015385.1 129887 130243 R hypothetical protein complement(129887..130243) Treponema succinifaciens DSM 2489 10430206 YP_004364384.1 CDS Tresu_0121 NC_015385.1 130579 131133 D COGs: COG0262 dihydrofolate reductase; InterPro IPR001796; KEGG: lba:Lebu_0682 dihydrofolate reductase region; PFAM: dihydrofolate reductase domain; SPTR: dihydrofolate reductase; PFAM: dihydrofolate reductase; dihydrofolate reductase subunit 130579..131133 Treponema succinifaciens DSM 2489 10430207 YP_004364385.1 CDS Tresu_0122 NC_015385.1 131069 131863 R COGs: COG1387 histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR004013; KEGG: tde:TDE0796 histidinol phosphate phosphatase HisJ family protein; PFAM: PHP, C-terminal; SPTR: histidinol phosphate phosphatase HisJ family protein; PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family; PHP domain-containing protein complement(131069..131863) Treponema succinifaciens DSM 2489 10430208 YP_004364386.1 CDS Tresu_0123 NC_015385.1 131973 134870 R COGs: COG0574 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192:IPR008279:IPR000121:IPR010121; KEGG: ssm:Spirs_1716 pyruvate, phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme; PRIAM: Pyruvate, phosphate dikinase; SPTR: Pyruvate, phosphate dikinase; TIGRFAM: Pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase; pyruvate, phosphate dikinase complement(131973..134870) Treponema succinifaciens DSM 2489 10430209 YP_004364387.1 CDS Tresu_0124 NC_015385.1 134992 135312 R InterPro IPR001387; KEGG: tde:TDE2445 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; PFAM: Helix-turn-helix; hypothetical protein complement(134992..135312) Treponema succinifaciens DSM 2489 10430210 YP_004364388.1 CDS Tresu_0125 NC_015385.1 135448 135762 D SPTR: Putative uncharacterized protein; hypothetical protein 135448..135762 Treponema succinifaciens DSM 2489 10430211 YP_004364389.1 CDS Tresu_0126 NC_015385.1 136051 136740 D KEGG: bmu:Bmul_4769 phage-related membrane protein; SPTR: Putative phage-related membrane protein; hypothetical protein 136051..136740 Treponema succinifaciens DSM 2489 10430212 YP_004364390.1 CDS Tresu_0127 NC_015385.1 136756 136980 D hypothetical protein 136756..136980 Treponema succinifaciens DSM 2489 10430213 YP_004364391.1 CDS Tresu_0128 NC_015385.1 137198 137902 D hypothetical protein 137198..137902 Treponema succinifaciens DSM 2489 10430214 YP_004364392.1 CDS Tresu_0129 NC_015385.1 138261 138689 D COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: tde:TDE1029 HSP20/alpha crystallin family protein; PFAM: Heat shock protein Hsp20; SPTR: Hsp20/alpha crystallin family protein; PFAM: Hsp20/alpha crystallin family; heat shock protein Hsp20 138261..138689 Treponema succinifaciens DSM 2489 10430215 YP_004364393.1 CDS Tresu_0130 NC_015385.1 139071 140285 R KEGG: ssm:Spirs_3810 surface antigen variable number repeat protein; SPTR: Surface antigen variable number repeat protein; hypothetical protein complement(139071..140285) Treponema succinifaciens DSM 2489 10430216 YP_004364394.1 CDS Tresu_0131 NC_015385.1 140383 141087 R COGs: COG0775 nucleoside phosphorylase; InterPro IPR000845:IPR010049; KEGG: bpb:bpr_I0034 MTA/SAH nucleosidase; PFAM: nucleoside phosphorylase domain; PRIAM: adenosylhomocysteine nucleosidase; SPTR: Putative uncharacterized protein; TIGRFAM: MTA/SAH nucleosidase; PFAM: phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; MTA/SAH nucleosidase complement(140383..141087) Treponema succinifaciens DSM 2489 10430217 YP_004364395.1 CDS Tresu_0132 NC_015385.1 141448 143214 D COGs: COG0367 asparagine synthase (glutamine-hydrolyzing); InterPro IPR000583:IPR001962:IPR006426; KEGG: cat:CA2559_06815 asparagine synthetase B, glutamine-hydrolyzing protein; PFAM: asparagine synthase; glutamine amidotransferase, class-II; PRIAM: asparagine synthase (glutamine-hydrolyzing); SPTR: asparagine synthetase B (glutamine-hydrolyzing); TIGRFAM: asparagine synthase, glutamine-hydrolyzing; PFAM: asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase 141448..143214 Treponema succinifaciens DSM 2489 10430218 YP_004364396.1 CDS Tresu_0133 NC_015385.1 143224 143916 D InterPro IPR005358; KEGG: tde:TDE0847 hypothetical protein; PFAM: Uncharacterised protein family UPF0153; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153); hypothetical protein 143224..143916 Treponema succinifaciens DSM 2489 10430219 YP_004364397.1 CDS Tresu_0134 NC_015385.1 143925 144800 R COGs: COG1284 conserved hypothetical protein; InterPro IPR003740:IPR019264; KEGG: eel:EUBELI_00177 hypothetical protein; PFAM: Domain of unknown function DUF2179; protein of unknown function DUF161; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179); hypothetical protein complement(143925..144800) Treponema succinifaciens DSM 2489 10430220 YP_004364398.1 CDS Tresu_0135 NC_015385.1 144924 146987 D COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: tde:TDE2783 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: methyl-accepting chemotaxis protein; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer 144924..146987 Treponema succinifaciens DSM 2489 10430221 YP_004364399.1 CDS Tresu_0136 NC_015385.1 147255 148973 D COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003959:IPR012763:IPR003593; KEGG: tde:TDE2586 DNA polymerase III subunits gamma and tau; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA polymerase III, gamma and tau subunits, ATPase AAA; TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau; DNA polymerase III subunits gamma/tau 147255..148973 Treponema succinifaciens DSM 2489 10430223 YP_004364400.1 CDS Tresu_0137 NC_015385.1 148975 150798 D COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: pmx:PERMA_1125 transporter; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Transporter (Extracellular solute binding protein family 5); PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; ABC transporter substrate-binding protein 148975..150798 Treponema succinifaciens DSM 2489 10430224 YP_004364401.1 CDS Tresu_0138 NC_015385.1 150809 151903 D COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: taf:THA_1532 oligopeptide transport system permease protein AppB; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Oligopeptide transport system permease protein AppB; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease 150809..151903 Treponema succinifaciens DSM 2489 10430225 YP_004364402.1 CDS Tresu_0139 NC_015385.1 151920 152897 D InterPro IPR004864; KEGG: lbf:LBF_1777 ATPase AAA lipoprotein; PFAM: Late embryogenesis abundant protein, group 2; SPTR: Putative uncharacterized protein; PFAM: Late embryogenesis abundant protein; Late embryogenesis abundant protein 2 151920..152897 Treponema succinifaciens DSM 2489 10430226 YP_004364403.1 CDS Tresu_0140 NC_015385.1 152904 154982 D COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR000515:IPR003439:IPR013563:IPR010066:IPR 003593; KEGG: sil:SPO2552 peptide/opine/nickel ABC transporter, permease/ATP-binding protein; PFAM: ABC transporter-like; Binding-protein-dependent transport systems inner membrane component; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; peptide ABC transporter ATPase 152904..154982 Treponema succinifaciens DSM 2489 10430227 YP_004364404.1 CDS Tresu_0141 NC_015385.1 154999 155973 D COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003439:IPR013563:IPR010066:IPR003593; KEGG: ipo:Ilyop_2512 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; peptide ABC transporter ATPase 154999..155973 Treponema succinifaciens DSM 2489 10430228 YP_004364405.1 CDS Tresu_0142 NC_015385.1 156022 156270 D hypothetical protein 156022..156270 Treponema succinifaciens DSM 2489 10430229 YP_004364406.1 CDS Tresu_0143 NC_015385.1 156267 158444 D COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR005144:IPR001150:IPR012833; KEGG: eel:EUBELI_01571 anaerobic ribonucleoside triphosphate reductase; PFAM: ATP-cone; formate C-acetyltransferase glycine radical; PRIAM: ribonucleoside-triphosphate reductase; SPTR: Anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: ribonucleoside-triphosphate reductase, anaerobic; PFAM: glycine radical; ATP cone domain; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; anaerobic ribonucleoside-triphosphate reductase 156267..158444 Treponema succinifaciens DSM 2489 10430230 YP_004364407.1 CDS Tresu_0144 NC_015385.1 158445 158930 D COGs: COG0602 Organic radical activating protein; InterPro IPR012837; KEGG: ere:EUBREC_1078 organic radical activating enzyme; SPTR: Anaerobic ribonucleoside-triphosphate reductase-activating protein; TIGRFAM: ribonucleoside-triphosphate reductase activating, anaerobic; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 158445..158930 Treponema succinifaciens DSM 2489 10430231 YP_004364408.1 CDS Tresu_0145 NC_015385.1 158937 159635 R COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: gfo:GFO_1697 two-component system sensor histidine kinase/response regulator hybrid; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: Two-component hybrid sensor and regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator complement(158937..159635) Treponema succinifaciens DSM 2489 10430232 YP_004364409.1 CDS Tresu_0146 NC_015385.1 159994 160425 R COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: reh:PHG187 ATPase AAA plasmid maintenance protein; PFAM: PilT protein, N-terminal; SPTR: PilT protein domain protein; PFAM: PIN domain; PilT protein domain-containing protein complement(159994..160425) Treponema succinifaciens DSM 2489 10430233 YP_004364410.1 CDS Tresu_0147 NC_015385.1 160484 160756 R InterPro IPR006442; PFAM: Prevent-host-death protein; TIGRFAM: Prevent-host-death protein; PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein; prevent-host-death family protein complement(160484..160756) Treponema succinifaciens DSM 2489 10430234 YP_004364411.1 CDS Tresu_0148 NC_015385.1 161030 161149 D InterPro IPR007337; PFAM: RelB antitoxin; PFAM: RelB antitoxin; TIGRFAM: addiction module antitoxin, RelB/DinJ family; RelB antitoxin 161030..161149 Treponema succinifaciens DSM 2489 10430235 YP_004364412.1 CDS Tresu_0149 NC_015385.1 161197 161553 D hypothetical protein 161197..161553 Treponema succinifaciens DSM 2489 10430236 YP_004364413.1 CDS Tresu_0150 NC_015385.1 161684 162100 D hypothetical protein 161684..162100 Treponema succinifaciens DSM 2489 10430237 YP_004364414.1 CDS Tresu_0151 NC_015385.1 162405 163514 D COGs: COG0571 dsRNA-specific ribonuclease; InterPro IPR000999:IPR001159; KEGG: smf:Smon_0778 ribonuclease III; PFAM: ribonuclease III; Double-stranded RNA-binding; SMART: ribonuclease III; SPTR: Putative uncharacterized protein; PFAM: RNase3 domain; ribonuclease III 162405..163514 Treponema succinifaciens DSM 2489 10430238 YP_004364415.1 CDS Tresu_0152 NC_015385.1 163514 164386 D KEGG: fsu:Fisuc_1185 hypothetical protein; SPTR: Conserved domain protein; PFAM: Competence protein CoiA-like family; hypothetical protein 163514..164386 Treponema succinifaciens DSM 2489 10430239 YP_004364416.1 CDS Tresu_0153 NC_015385.1 164389 164994 D KEGG: ddf:DEFDS_0878 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 164389..164994 Treponema succinifaciens DSM 2489 10430240 YP_004364417.1 CDS Tresu_0154 NC_015385.1 165080 165460 D InterPro IPR013229; PFAM: PEGA; PFAM: PEGA domain; PEGA domain-containing protein 165080..165460 Treponema succinifaciens DSM 2489 10430241 YP_004364418.1 CDS Tresu_0155 NC_015385.1 165453 165827 D hypothetical protein 165453..165827 Treponema succinifaciens DSM 2489 10430242 YP_004364419.1 CDS Tresu_0156 NC_015385.1 166071 166511 D hypothetical protein 166071..166511 Treponema succinifaciens DSM 2489 10430243 YP_004364420.1 CDS Tresu_0157 NC_015385.1 166654 167097 R KEGG: cno:NT01CX_0450 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(166654..167097) Treponema succinifaciens DSM 2489 10430244 YP_004364421.1 CDS Tresu_0158 NC_015385.1 167075 167557 R KEGG: ctc:CTC02408 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(167075..167557) Treponema succinifaciens DSM 2489 10430245 YP_004364422.1 CDS Tresu_0159 NC_015385.1 167550 169295 R COGs: COG1022 long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: tde:TDE0942 long-chain-fatty-acid--CoA ligase, ATPase AAA; PFAM: AMP-dependent synthetase/ligase; PRIAM: long-chain-fatty-acid--CoA ligase; SPTR: long-chain-fatty-acid--CoA ligase, ATPase AAA; PFAM: AMP-binding enzyme; long-chain-fatty-acid--CoA ligase complement(167550..169295) Treponema succinifaciens DSM 2489 10430246 YP_004364423.1 CDS Tresu_0160 NC_015385.1 169432 171066 R COGs: COG0459 Chaperonin GroEL (HSP60 family); HAMAP: Chaperonin Cpn60; InterPro IPR001844:IPR002423; KEGG: tpp:TPASS_0030 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: Chaperonin Cpn60; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL; 60 kDa chaperonin complement(169432..171066) Treponema succinifaciens DSM 2489 10430247 YP_004364424.1 CDS Tresu_0161 NC_015385.1 171434 173731 D COGs: COG1882 Pyruvate-formate lyase; InterPro IPR004184:IPR001150:IPR005949; KEGG: bpb:bpr_I0112 pyruvate formate lyase PflB; PFAM: Pyruvate formate-lyase, PFL; formate C-acetyltransferase glycine radical; PRIAM: formate C-acetyltransferase; SPTR: formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: glycine radical; Pyruvate formate lyase; TIGRFAM: formate acetyltransferase 1; formate acetyltransferase 171434..173731 Treponema succinifaciens DSM 2489 10430248 YP_004364425.1 CDS Tresu_0162 NC_015385.1 173828 174994 R hypothetical protein complement(173828..174994) Treponema succinifaciens DSM 2489 10430249 YP_004364426.1 CDS Tresu_0163 NC_015385.1 175015 175770 R COGs: COG0708 Exonuclease III; InterPro IPR005135:IPR000097:IPR004808; KEGG: ere:EUBREC_0501 exodeoxyribonuclease; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: exodeoxyribonuclease; TIGRFAM: exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth); exodeoxyribonuclease III Xth complement(175015..175770) Treponema succinifaciens DSM 2489 10430250 YP_004364427.1 CDS Tresu_0165 NC_015385.1 176332 176679 D SPTR: Putative uncharacterized protein; hypothetical protein 176332..176679 Treponema succinifaciens DSM 2489 10430252 YP_004364428.1 CDS Tresu_0166 NC_015385.1 176799 177545 D COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197:IPR012838; KEGG: fsu:Fisuc_1047 pyruvate formate-lyase activating enzyme; PFAM: Radical SAM; PRIAM: [formate-C-acetyltransferase]-activating enzyme; SPTR: Pyruvate formate-lyase activating enzyme; TIGRFAM: Pyruvate formate-lyase activating; PFAM: Radical SAM superfamily; TIGRFAM: pyruvate formate-lyase 1-activating enzyme; pyruvate formate-lyase activating enzyme 176799..177545 Treponema succinifaciens DSM 2489 10430253 YP_004364429.1 CDS Tresu_0167 NC_015385.1 177666 178799 D hypothetical protein 177666..178799 Treponema succinifaciens DSM 2489 10430254 YP_004364430.1 CDS Tresu_0168 NC_015385.1 178916 179722 D COGs: COG2206 HD-GYP domain; KEGG: aar:Acear_1932 diguanylate cyclase and metal dependent phosphohydrolase; SPTR: Diguanylate cyclase and metal dependent phosphohydrolase; metal dependent phosphohydrolase 178916..179722 Treponema succinifaciens DSM 2489 10430255 YP_004364431.1 CDS Tresu_0169 NC_015385.1 179790 181058 D COGs: COG2195 Di- and tripeptidase; InterPro IPR002933:IPR011650:IPR010161; KEGG: ssm:Spirs_3909 peptidase T; PFAM: peptidase M20; peptidase M20, dimerisation; PRIAM: Tripeptide aminopeptidase; SPTR: peptidase T; TIGRFAM: peptidase M20B, tripeptide aminopeptidase; PFAM: peptidase family M20/M25/M40; TIGRFAM: peptidase T; peptidase T 179790..181058 Treponema succinifaciens DSM 2489 10430256 YP_004364432.1 CDS Tresu_0170 NC_015385.1 181090 182373 D COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro IPR005750:IPR001986; KEGG: tde:TDE0641 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: Enolpyruvate transferase domain; PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine1- carboxyvinyltransferase 181090..182373 Treponema succinifaciens DSM 2489 10430257 YP_004364433.1 CDS Tresu_0171 NC_015385.1 182446 184203 D COGs: COG0441 Threonyl-tRNA synthetase; InterPro IPR012947:IPR002314:IPR004154:IPR002320; KEGG: tde:TDE1090 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; Anticodon-binding; SMART: Threonyl/alanyl tRNA synthetase, SAD; SPTR: Threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: threonyl-tRNA synthetase; threonyl-tRNA synthetase 182446..184203 Treponema succinifaciens DSM 2489 10430258 YP_004364434.1 CDS Tresu_0172 NC_015385.1 184200 184862 R KEGG: tde:TDE2164 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(184200..184862) Treponema succinifaciens DSM 2489 10430259 YP_004364435.1 CDS Tresu_0173 NC_015385.1 184892 185470 R COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: pag:PLES_15401 ATPase AAA lipoprotein; PFAM: NLP/P60; SPTR: Putative uncharacterized protein; PFAM: NlpC/P60 family; NLP/P60 protein complement(184892..185470) Treponema succinifaciens DSM 2489 10430260 YP_004364436.1 CDS Tresu_0174 NC_015385.1 185864 187081 D COGs: COG3007 Uncharacterized paraquat-inducible protein B; HAMAP: Uncharacterised protein family, TER reductase; InterPro IPR010758; KEGG: fsu:Fisuc_0738 trans-2-enoyl-CoA reductase; PFAM: Uncharacterised protein family, TER reductase; PRIAM: Trans-2-enoyl-CoA reductase (NAD(+)); SPTR: Putative reductase Fisuc_0738; PFAM: Trans-2-enoyl-CoA reductase catalytic region; NAD(P)H binding domain of trans-2-enoyl-CoA reductase; Enoyl reductase FAD binding domain; reductase 185864..187081 Treponema succinifaciens DSM 2489 10430261 YP_004364437.1 CDS Tresu_0175 NC_015385.1 187163 188176 D COGs: COG3693 beta-1 4-xylanase; InterPro IPR001000; KEGG: sta:STHERM_c18930 endo-1,4-beta-xylanase B precursor; PFAM: glycoside hydrolase, family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: glycoside hydrolase, family 10; SPTR: Endo-1,4-beta-xylanase B; PFAM: glycosyl hydrolase family 10; endo-1,4-beta-xylanase 187163..188176 Treponema succinifaciens DSM 2489 10430262 YP_004364438.1 CDS Tresu_0176 NC_015385.1 188211 189356 R hypothetical protein complement(188211..189356) Treponema succinifaciens DSM 2489 10430263 YP_004364439.1 CDS Tresu_0177 NC_015385.1 189753 190775 D COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: tra:Trad_2036 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family; LacI family transcriptional regulator 189753..190775 Treponema succinifaciens DSM 2489 10430264 YP_004364440.1 CDS Tresu_0178 NC_015385.1 190753 191412 R COGs: COG1636 conserved hypothetical protein; InterPro IPR003828; KEGG: ipo:Ilyop_0959 protein of unknown function DUF208; PFAM: protein of unknown function DUF208; SPTR: DNA integration/recombination/invertion protein; PFAM: Uncharacterized BCR, COG1636; hypothetical protein complement(190753..191412) Treponema succinifaciens DSM 2489 10430265 YP_004364441.1 CDS Tresu_0180 NC_015385.1 192485 193549 D COGs: COG3641 membrane protein ATPase AAA toxin regulator; KEGG: bpb:bpr_I2822 hypothetical protein; SPTR: Predicted membrane protein, ATPase AAA toxin regulator; hypothetical protein 192485..193549 Treponema succinifaciens DSM 2489 10430267 YP_004364442.1 CDS Tresu_0181 NC_015385.1 193597 196002 D COGs: COG1306 conserved hypothetical protein; KEGG: tde:TDE2182 hypothetical protein; SPTR: Conserved domain protein; hypothetical protein 193597..196002 Treponema succinifaciens DSM 2489 10430268 YP_004364443.1 CDS Tresu_0182 NC_015385.1 195999 197387 D COGs: COG0486 GTPase; HAMAP: tRNA modification GTPase TrmE; InterPro IPR004520:IPR018948:IPR002917:IPR005225; KEGG: tde:TDE2180 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; SPTR: tRNA modification GTPase mnmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE; tRNA modification GTPase mnmE 195999..197387 Treponema succinifaciens DSM 2489 10430269 YP_004364444.1 CDS Tresu_0183 NC_015385.1 197422 198219 D KEGG: tpp:TPASS_0678 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 197422..198219 Treponema succinifaciens DSM 2489 10430270 YP_004364445.1 CDS Tresu_0184 NC_015385.1 198310 198726 D KEGG: tde:TDE1018 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 198310..198726 Treponema succinifaciens DSM 2489 10430271 YP_004364446.1 CDS Tresu_0185 NC_015385.1 198773 199666 R KEGG: ssm:Spirs_3969 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(198773..199666) Treponema succinifaciens DSM 2489 10430272 YP_004364447.1 CDS Tresu_0186 NC_015385.1 199726 200607 R COGs: COG0613 metal-dependent phosphoesterase (PHP family); InterPro IPR004013:IPR003141; KEGG: tde:TDE2618 phosphotransferase domain-containing protein; PFAM: PHP, C-terminal; SMART: polymerase/histidinol phosphatase, N-terminal; SPTR: PHP domain protein; PFAM: PHP domain; PHP domain-containing protein complement(199726..200607) Treponema succinifaciens DSM 2489 10430273 YP_004364448.1 CDS Tresu_0187 NC_015385.1 200726 202006 D COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: tde:TDE2616 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; Crp/Fnr family transcriptional regulator 200726..202006 Treponema succinifaciens DSM 2489 10430274 YP_004364449.1 CDS Tresu_0188 NC_015385.1 202113 202673 R COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: pdi:BDI_2172 ATPase AAA flavoredoxin; PFAM: Flavin reductase-like, FMN-binding; SPTR: Putative uncharacterized protein; PFAM: Flavin reductase like domain; flavin reductase domain-containing FMN-binding protein complement(202113..202673) Treponema succinifaciens DSM 2489 10430275 YP_004364450.1 CDS Tresu_0189 NC_015385.1 203015 203512 D COGs: COG0703 shikimate kinase; HAMAP: shikimate kinase; InterPro IPR000623; KEGG: bpb:bpr_I2047 shikimate kinase AroK; PFAM: shikimate kinase; PRIAM: shikimate kinase; SPTR: shikimate kinase AroK; PFAM: shikimate kinase; shikimate kinase 203015..203512 Treponema succinifaciens DSM 2489 10430276 YP_004364451.1 CDS Tresu_0190 NC_015385.1 203516 205756 R COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: pen:PSEEN3920 hypothetical protein; PFAM: Patatin/phospholipase A2-related; SPTR: Putative uncharacterized protein; PFAM: Patatin-like phospholipase; patatin complement(203516..205756) Treponema succinifaciens DSM 2489 10430277 YP_004364452.1 CDS Tresu_0191 NC_015385.1 206147 207442 D hypothetical protein 206147..207442 Treponema succinifaciens DSM 2489 10430278 YP_004364453.1 CDS Tresu_0192 NC_015385.1 207817 210171 D COGs: COG2183 Transcriptional accessory protein; InterPro IPR018974:IPR003029:IPR006641:IPR022967; KEGG: tde:TDE1012 tex protein, ATPase AAA; PFAM: Tex-like protein, N-terminal; ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1; Resolvase, RNase H-like fold; SPTR: Tex protein, ATPase AAA; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; Tex-like protein 207817..210171 Treponema succinifaciens DSM 2489 10430279 YP_004364454.1 CDS Tresu_0193 NC_015385.1 210726 212468 D COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: fma:FMG_1532 type I restriction-modification system DNA methylase; PFAM: DNA methylase, adenine-specific; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Type I restriction-modification system DNA methylase; PFAM: N-6 DNA methylase; HsdM N-terminal domain; adenine-specific DNA-methyltransferase 210726..212468 Treponema succinifaciens DSM 2489 10430281 YP_004364455.1 CDS Tresu_0194 NC_015385.1 212465 213403 D InterPro IPR018873; KEGG: bpb:bpr_I2827 hypothetical protein; PFAM: KilA-N, DNA-binding domain; SPTR: ORF6N domain; PFAM: ORF6N domain; KilA-N, DNA-binding domain-containing protein 212465..213403 Treponema succinifaciens DSM 2489 10430282 YP_004364456.1 CDS Tresu_0195 NC_015385.1 213453 213893 D InterPro IPR009362; KEGG: mbu:Mbur_1219 hypothetical protein; PFAM: protein of unknown function DUF1016; SPTR: Phage uncharacterized family protein; PFAM: protein of unknown function (DUF1016); hypothetical protein 213453..213893 Treponema succinifaciens DSM 2489 10430283 YP_004364457.1 CDS Tresu_0196 NC_015385.1 213988 215142 D COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: plm:Plim_1220 restriction modification system DNA specificity domain protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain protein; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein 213988..215142 Treponema succinifaciens DSM 2489 10430284 YP_004364458.1 CDS Tresu_0197 NC_015385.1 215139 216476 D KEGG: tcx:Tcr_1102 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 215139..216476 Treponema succinifaciens DSM 2489 10430285 YP_004364459.1 CDS Tresu_0199 NC_015385.1 218170 219368 D InterPro IPR002514; KEGG: lby:Lbys_0266 transposase IS3/is911 family protein; PFAM: Transposase IS3/IS911family; SPTR: Putative uncharacterized protein; manually curated; PFAM: Transposase; Integrase core domain; transposase IS3/IS911 family protein join(218170..218445,218445..219368) Treponema succinifaciens DSM 2489 10430287 YP_004364460.1 CDS Tresu_0200 NC_015385.1 220283 221338 D COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: abu:Abu_1071 hypothetical protein; PFAM: Filamentation induced by cAMP/death on curing-related; SPTR: Filamentation induced by cAMP protein Fic; PFAM: Fic/DOC family; filamentation induced by cAMP protein fic 220283..221338 Treponema succinifaciens DSM 2489 10430288 YP_004364461.1 CDS Tresu_0201 NC_015385.1 221351 224581 D COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409:IPR006935:IPR004473:IPR014001; KEGG: fma:FMG_1534 type I restriction enzyme; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Type I restriction enzyme; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Domain of unknown function (DUF3387); Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; HsdR family type I site-specific deoxyribonuclease 221351..224581 Treponema succinifaciens DSM 2489 10430289 YP_004364462.1 CDS Tresu_0202 NC_015385.1 224690 225460 R COGs: COG0428 divalent heavy-metal cations transporter; InterPro IPR003689; KEGG: cpy:Cphy_0713 zinc/iron permease; PFAM: Zinc/iron permease; SPTR: Zinc:iron permease; PFAM: ZIP Zinc transporter; zinc/iron permease complement(224690..225460) Treponema succinifaciens DSM 2489 10430290 YP_004364463.1 CDS Tresu_0203 NC_015385.1 225580 226887 D COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: ssm:Spirs_0898 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein; outer membrane efflux protein 225580..226887 Treponema succinifaciens DSM 2489 10430291 YP_004364464.1 CDS Tresu_0204 NC_015385.1 226889 227827 D COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: ssm:Spirs_0899 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit; RND family efflux transporter MFP subunit 226889..227827 Treponema succinifaciens DSM 2489 10430292 YP_004364465.1 CDS Tresu_0205 NC_015385.1 227831 230935 D COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: ssm:Spirs_0038 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); acriflavin resistance protein 227831..230935 Treponema succinifaciens DSM 2489 10430293 YP_004364466.1 CDS Tresu_0206 NC_015385.1 230936 231226 D KEGG: ssm:Spirs_0039 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 230936..231226 Treponema succinifaciens DSM 2489 10430294 YP_004364467.1 CDS Tresu_0207 NC_015385.1 231357 232961 D COGs: COG0504 CTP synthase (UTP-ammonia lyase); HAMAP: CTP synthase; InterPro IPR004468:IPR017456:IPR000991; KEGG: vpr:Vpar_1584 CTP synthase; PFAM: CTP synthase, N-terminal; glutamine amidotransferase class-I, C-terminal; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; PFAM: glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase; CTP synthase 231357..232961 Treponema succinifaciens DSM 2489 10430295 YP_004364468.1 CDS Tresu_0208 NC_015385.1 233148 233729 R COGs: COG3707 Response regulator with ATPase AAA antiterminator output domain; InterPro IPR001789:IPR005561; KEGG: cth:Cthe_0203 response regulator receiver/ANTAR domain-containing protein; PFAM: ANTAR; Signal transduction response regulator, receiver domain; SPTR: Putative uncharacterized protein; PFAM: Response regulator receiver domain; ANTAR domain; response regulator receiver and ANTAR domain-containing protein complement(233148..233729) Treponema succinifaciens DSM 2489 10430296 YP_004364469.1 CDS Tresu_0209 NC_015385.1 233741 234949 R COGs: COG0174 glutamine synthetase; InterPro IPR008147:IPR008146; KEGG: cth:Cthe_0202 L-glutamine synthetase; PFAM: glutamine synthetase, catalytic domain; glutamine synthetase, beta-Grasp; SPTR: Putative uncharacterized protein; PFAM: glutamine synthetase, catalytic domain; glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I; glutamine synthetase catalytic subunit complement(233741..234949) Treponema succinifaciens DSM 2489 10430297 YP_004364470.1 CDS Tresu_0210 NC_015385.1 235319 237412 D COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: cth:Cthe_0196 glutamine synthetase, catalytic region; PFAM: glutamine synthetase, catalytic domain; SPTR: Putative uncharacterized protein; PFAM: glutamine synthetase, catalytic domain; glutamine synthetase type III N terminal; glutamine synthetase catalytic subunit 235319..237412 Treponema succinifaciens DSM 2489 10430298 YP_004364471.1 CDS Tresu_0211 NC_015385.1 237525 238004 D COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: ava:Ava_1912 allergen V5/TPX-1 related; PFAM: CAP domain; SPTR: Allergen V5/Tpx-1 related protein; PFAM: Cysteine-rich secretory protein family; hypothetical protein 237525..238004 Treponema succinifaciens DSM 2489 10430299 YP_004364472.1 CDS Tresu_0212 NC_015385.1 238027 239019 D COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: tde:TDE2241 glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase, group 2 family; PFAM: glycosyl transferase family 2; family 2 glycosyl transferase 238027..239019 Treponema succinifaciens DSM 2489 10430300 YP_004364473.1 CDS Tresu_0213 NC_015385.1 239257 241008 D COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR002187; KEGG: ere:EUBREC_0702 adenylate/guanylate cyclase; PFAM: Ammonium transporter; Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; SPTR: Ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium Transporter Family; Nitrogen regulatory protein P-II; TIGRFAM: ammonium transporter; ammonium transporter 239257..241008 Treponema succinifaciens DSM 2489 10430301 YP_004364474.1 CDS Tresu_0214 NC_015385.1 241413 242714 R InterPro IPR003368:IPR006626; KEGG: mru:mru_0962 adhesin-like protein; PFAM: polymorphic membrane protein, Chlamydia; SPTR: Probable extracellular nuclease; polymorphic membrane protein complement(241413..242714) Treponema succinifaciens DSM 2489 10430302 YP_004364475.1 CDS Tresu_0215 NC_015385.1 242758 243006 R hypothetical protein complement(242758..243006) Treponema succinifaciens DSM 2489 10430303 YP_004364476.1 CDS Tresu_0216 NC_015385.1 243332 244549 R COGs: COG1373 ATPase (AAA+ superfamily); KEGG: dhd:Dhaf_4874 ATPase; SPTR: Putative uncharacterized protein; ATPase complement(243332..244549) Treponema succinifaciens DSM 2489 10430304 YP_004364477.1 CDS Tresu_0217 NC_015385.1 244878 246464 R hypothetical protein complement(244878..246464) Treponema succinifaciens DSM 2489 10430305 YP_004364478.1 CDS Tresu_0218 NC_015385.1 246750 247904 R COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893:IPR017508; KEGG: sus:Acid_2061 HipA domain-containing protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA domain-containing protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like N-terminal domain; HipA-like C-terminal domain; TIGRFAM: HipA N-terminal domain; HipA N-terminal domain-containing protein complement(246750..247904) Treponema succinifaciens DSM 2489 10430306 YP_004364479.1 CDS Tresu_0219 NC_015385.1 247901 248122 R KEGG: ele:Elen_1196 transcriptional regulator, XRE family; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix; TIGRFAM: transcriptional regulator, y4mF family; XRE family transcriptional regulator complement(247901..248122) Treponema succinifaciens DSM 2489 10430307 YP_004364480.1 CDS Tresu_0220 NC_015385.1 248268 249248 D KEGG: cpy:Cphy_1581 ABC-type sugar transport system periplasmic component-like protein; SPTR: ABC-type sugar transport system periplasmic component-like protein; hypothetical protein 248268..249248 Treponema succinifaciens DSM 2489 10430308 YP_004364481.1 CDS Tresu_0221 NC_015385.1 249245 250735 D COGs: COG2972 signal transduction protein with a C-terminal ATPase domain; InterPro IPR003660:IPR010559:IPR003594; KEGG: csh:Closa_3815 integral membrane sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, internal region; HAMP linker domain; ATPase-like, ATP-binding domain; SMART: HAMP linker domain; SPTR: Putative regulator of cell autolysis; PFAM: histidine kinase; HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; histidine kinase 249245..250735 Treponema succinifaciens DSM 2489 10430309 YP_004364482.1 CDS Tresu_0222 NC_015385.1 250728 252296 D COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; InterPro IPR001789:IPR000005:IPR018060; KEGG: bpb:bpr_I1171 two component system response regulator; PFAM: Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, AraC family; PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family; AraC family transcriptional regulator 250728..252296 Treponema succinifaciens DSM 2489 10430310 YP_004364483.1 CDS Tresu_0223 NC_015385.1 252293 253330 D COGs: COG4213 ABC-type xylose transport system periplasmic component; KEGG: cpy:Cphy_1584 periplasmic binding protein/LacI transcriptional regulator; SPTR: Periplasmic binding protein/LacI transcriptional regulator; PFAM: family; LacI family transcriptional regulator 252293..253330 Treponema succinifaciens DSM 2489 10430311 YP_004364484.1 CDS Tresu_0224 NC_015385.1 253375 254364 D COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: tde:TDE0319 hypothetical protein; PFAM: ATPase, AAA-3; SPTR: Putative uncharacterized protein; PFAM: ATPase family associated with various cellular activities (AAA); ATPase 253375..254364 Treponema succinifaciens DSM 2489 10430312 YP_004364485.1 CDS Tresu_0225 NC_015385.1 254361 255239 D COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: tde:TDE1248 hypothetical protein; PFAM: Domain of unknown function DUF58; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function DUF58; hypothetical protein 254361..255239 Treponema succinifaciens DSM 2489 10430313 YP_004364486.1 CDS Tresu_0226 NC_015385.1 255249 256295 D KEGG: tde:TDE1249 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 255249..256295 Treponema succinifaciens DSM 2489 10430314 YP_004364487.1 CDS Tresu_0227 NC_015385.1 256431 257432 D InterPro IPR002035; KEGG: tde:TDE1250 BatA protein, ATPase AAA; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: BatA protein, ATPase AAA; PFAM: von Willebrand factor type A domain; von Willebrand factor type A 256431..257432 Treponema succinifaciens DSM 2489 10430315 YP_004364488.1 CDS Tresu_0228 NC_015385.1 257429 259045 D InterPro IPR002035:IPR019734; KEGG: tde:TDE1252 ATPase AAA lipoprotein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; Tetratricopeptide repeat; SPTR: lipoprotein, ATPase AAA; von Willebrand factor type A 257429..259045 Treponema succinifaciens DSM 2489 10430316 YP_004364489.1 CDS Tresu_0229 NC_015385.1 258997 260379 D InterPro IPR013247; KEGG: tde:TDE1253 hypothetical protein; PFAM: SH3, type 3; SPTR: Putative uncharacterized protein; PFAM: Bacterial SH3 domain; SH3 type 3 domain-containing protein 258997..260379 Treponema succinifaciens DSM 2489 10430317 YP_004364490.1 CDS Tresu_0230 NC_015385.1 260394 260951 D COGs: COG2840 conserved hypothetical protein; InterPro IPR002625; KEGG: tde:TDE1254 Smr domain-containing protein; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal; SPTR: Smr domain protein; PFAM: Smr domain; Smr protein/MutS2 260394..260951 Treponema succinifaciens DSM 2489 10430318 YP_004364491.1 CDS Tresu_0231 NC_015385.1 261014 261520 D COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623; KEGG: tte:TTE0956 chaperone protein DnaJ; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Heat shock protein DnaJ; PFAM: DnaJ domain; heat shock protein DnaJ domain-containing protein 261014..261520 Treponema succinifaciens DSM 2489 10430319 YP_004364492.1 CDS Tresu_0232 NC_015385.1 261543 262001 D COGs: COG0328 ribonuclease HI; HAMAP: ribonuclease H; InterPro IPR022892:IPR002156; KEGG: hdn:Hden_2893 ribonuclease H; PFAM: ribonuclease H domain; PRIAM: ribonuclease H; SPTR: ribonuclease H; PFAM: RNase H; ribonuclease H 261543..262001 Treponema succinifaciens DSM 2489 10430320 YP_004364493.1 CDS Tresu_0233 NC_015385.1 262044 262541 R InterPro IPR005503; KEGG: tde:TDE2322 flagellar protein FliL-related protein; PFAM: flagellar basal body-associated protein FliL; SPTR: flagellar protein FliL-related protein; PFAM: flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL complement(262044..262541) Treponema succinifaciens DSM 2489 10430321 YP_004364494.1 CDS Tresu_0234 NC_015385.1 262538 263857 R COGs: COG2262 GTPase; InterPro IPR002917:IPR016496; KEGG: ssm:Spirs_3087 GTP-binding protein HflX; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding proten HflX; TIGRFAM: GTP-binding protein, HflX; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain; GTP-binding proten HflX complement(262538..263857) Treponema succinifaciens DSM 2489 10430322 YP_004364495.1 CDS Tresu_0235 NC_015385.1 264057 264266 D hypothetical protein 264057..264266 Treponema succinifaciens DSM 2489 10430323 YP_004364496.1 CDS Tresu_0236 NC_015385.1 264269 264661 R COGs: COG0824 thioesterase; InterPro IPR006683:IPR006684; KEGG: tde:TDE2225 thioesterase family protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase family protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; 4-hydroxybenzoyl-CoA thioesterase complement(264269..264661) Treponema succinifaciens DSM 2489 10430324 YP_004364497.1 CDS Tresu_0237 NC_015385.1 264678 266210 R KEGG: tde:TDE0063 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(264678..266210) Treponema succinifaciens DSM 2489 10430325 YP_004364498.1 CDS Tresu_0238 NC_015385.1 266296 268515 D COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: tde:TDE0071 U32 family peptidase; PFAM: peptidase U32; SPTR: peptidase, U32 family; PFAM: peptidase family U32; peptidase U32 266296..268515 Treponema succinifaciens DSM 2489 10430326 YP_004364499.1 CDS Tresu_0239 NC_015385.1 268632 269648 D InterPro IPR011747; KEGG: noc:Noc_1873 phage tail region protein; SPTR: Conserved hypothetical phage tail region protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein; hypothetical protein 268632..269648 Treponema succinifaciens DSM 2489 10430327 YP_004364500.1 CDS Tresu_0240 NC_015385.1 269649 270371 D KEGG: cla:Cla_0887 hypothetical protein; SPTR: KWG repeat domain protein; hypothetical protein 269649..270371 Treponema succinifaciens DSM 2489 10430328 YP_004364501.1 CDS Tresu_0241 NC_015385.1 270639 270983 D hypothetical protein 270639..270983 Treponema succinifaciens DSM 2489 10430329 YP_004364502.1 CDS Tresu_0242 NC_015385.1 271012 271104 D hypothetical protein 271012..271104 Treponema succinifaciens DSM 2489 10430330 YP_004364503.1 CDS Tresu_0245 NC_015385.1 272125 272667 D hypothetical protein 272125..272667 Treponema succinifaciens DSM 2489 10430333 YP_004364504.1 CDS Tresu_0246 NC_015385.1 272636 272995 D KEGG: tmt:Tmath_0464 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 272636..272995 Treponema succinifaciens DSM 2489 10430334 YP_004364505.1 CDS Tresu_0247 NC_015385.1 273247 273657 D hypothetical protein 273247..273657 Treponema succinifaciens DSM 2489 10430335 YP_004364506.1 CDS Tresu_0248 NC_015385.1 273754 274668 D COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR011747; KEGG: gsu:GSU0979 hypothetical protein; PFAM: peptidase M23; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: T4-like virus tail tube protein gp19; peptidase family M23; TIGRFAM: conserved hypothetical phage tail region protein; hypothetical protein 273754..274668 Treponema succinifaciens DSM 2489 10430336 YP_004364507.1 CDS Tresu_0249 NC_015385.1 274668 275156 D hypothetical protein 274668..275156 Treponema succinifaciens DSM 2489 10430337 YP_004364508.1 CDS Tresu_0250 NC_015385.1 275340 275807 D hypothetical protein 275340..275807 Treponema succinifaciens DSM 2489 10430338 YP_004364509.1 CDS Tresu_0251 NC_015385.1 275807 276571 D hypothetical protein 275807..276571 Treponema succinifaciens DSM 2489 10430339 YP_004364510.1 CDS Tresu_0252 NC_015385.1 276641 277597 D COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064:IPR011747; KEGG: noc:Noc_1873 phage tail region protein; PFAM: NLP/P60; SPTR: Conserved hypothetical phage tail region protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: NlpC/P60 family; T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein; hypothetical protein 276641..277597 Treponema succinifaciens DSM 2489 10430340 YP_004364511.1 CDS Tresu_0253 NC_015385.1 277607 278083 D hypothetical protein 277607..278083 Treponema succinifaciens DSM 2489 10430341 YP_004364512.1 CDS Tresu_0254 NC_015385.1 278178 278354 D hypothetical protein 278178..278354 Treponema succinifaciens DSM 2489 10430342 YP_004364513.1 CDS Tresu_0255 NC_015385.1 278540 278923 D hypothetical protein 278540..278923 Treponema succinifaciens DSM 2489 10430343 YP_004364514.1 CDS Tresu_0256 NC_015385.1 279018 281291 R COGs: COG0620 methionine synthase II (cobalamin-independent); HAMAP: Cobalamin-independent methionine synthase; InterPro IPR006276:IPR013215:IPR002629; KEGG: fsu:Fisuc_1351 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; PRIAM:5-methyltetrahydropteroyltriglutamate--homocy steineS-methyltransferase; SPTR:5-methyltetrahydropteroyltriglutamate--homocys teinemethyltransferase; TIGRFAM: Cobalamin-independent methionine synthase; PFAM: Cobalamin-independent synthase, Catalytic domain; Cobalamin-independent synthase, N-terminal domain; TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase complement(279018..281291) Treponema succinifaciens DSM 2489 10430344 YP_004364515.1 CDS Tresu_0258 NC_015385.1 281815 282984 D COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR022644:IPR022643; KEGG: tde:TDE1109 pyridoxal-dependent family decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; PRIAM: ornithine decarboxylase; SPTR: Decarboxylase, pyridoxal-dependent family; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; ornithine decarboxylase 281815..282984 Treponema succinifaciens DSM 2489 10430346 YP_004364516.1 CDS Tresu_0259 NC_015385.1 283182 283721 D KEGG: tde:TDE0022 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 283182..283721 Treponema succinifaciens DSM 2489 10430347 YP_004364517.1 CDS Tresu_0260 NC_015385.1 283731 284990 D COGs: COG0014 gamma-glutamyl phosphate reductase; HAMAP: glutamate-5-semialdehyde dehydrogenase; InterPro IPR012134:IPR000965; KEGG: aoe:Clos_0127 gamma-glutamyl phosphate reductase; PRIAM: glutamate-5-semialdehyde dehydrogenase; SPTR: gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase GPR; PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 283731..284990 Treponema succinifaciens DSM 2489 10430348 YP_004364518.1 CDS Tresu_0261 NC_015385.1 285236 287533 R COGs: COG0072 phenylalanyl-tRNA synthetase beta subunit; InterPro IPR005147:IPR002547:IPR004531:IPR005146; KEGG: tde:TDE1927 phenylalanyl-tRNA synthetase subunit beta; PFAM: tRNA-binding domain; tRNA synthetase, B5; SMART: tRNA synthetase, B5; B3/B4 tRNA-binding domain; SPTR: phenylalanyl-tRNA synthetase beta chain; TIGRFAM: phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic; PFAM: tRNA synthetase B5 domain; Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta complement(285236..287533) Treponema succinifaciens DSM 2489 10430349 YP_004364519.1 CDS Tresu_0262 NC_015385.1 288479 289390 R KEGG: fjo:Fjoh_0919 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(288479..289390) Treponema succinifaciens DSM 2489 10430350 YP_004364520.1 CDS Tresu_0263 NC_015385.1 289407 289736 R hypothetical protein complement(289407..289736) Treponema succinifaciens DSM 2489 10430351 YP_004364521.1 CDS Tresu_0265 NC_015385.1 290680 291069 R hypothetical protein complement(290680..291069) Treponema succinifaciens DSM 2489 10430353 YP_004364522.1 CDS Tresu_0266 NC_015385.1 291340 293079 D COGs: COG3500 Phage protein D; KEGG: npu:Npun_F1409 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phage late control gene D protein (GPD); hypothetical protein 291340..293079 Treponema succinifaciens DSM 2489 10430354 YP_004364523.1 CDS Tresu_0267 NC_015385.1 293100 293621 D hypothetical protein 293100..293621 Treponema succinifaciens DSM 2489 10430355 YP_004364524.1 CDS Tresu_0268 NC_015385.1 293618 294172 D hypothetical protein 293618..294172 Treponema succinifaciens DSM 2489 10430356 YP_004364525.1 CDS Tresu_0269 NC_015385.1 294208 294354 R hypothetical protein complement(294208..294354) Treponema succinifaciens DSM 2489 10430357 YP_004364526.1 CDS Tresu_0270 NC_015385.1 294650 296227 D COGs: COG3500 Phage protein D; KEGG: npu:Npun_F1409 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phage late control gene D protein (GPD); hypothetical protein 294650..296227 Treponema succinifaciens DSM 2489 10430358 YP_004364527.1 CDS Tresu_0271 NC_015385.1 296215 296406 D hypothetical protein 296215..296406 Treponema succinifaciens DSM 2489 10430359 YP_004364528.1 CDS Tresu_0272 NC_015385.1 296396 296950 D hypothetical protein 296396..296950 Treponema succinifaciens DSM 2489 10430360 YP_004364529.1 CDS Tresu_0273 NC_015385.1 296940 297344 D hypothetical protein 296940..297344 Treponema succinifaciens DSM 2489 10430361 YP_004364530.1 CDS Tresu_0274 NC_015385.1 297529 299370 D KEGG: gvi:gll0425 hypothetical protein; SPTR: Gll0425 protein; PFAM: Phage late control gene D protein (GPD); hypothetical protein 297529..299370 Treponema succinifaciens DSM 2489 10430362 YP_004364531.1 CDS Tresu_0275 NC_015385.1 299386 300531 D KEGG: cpi:Cpin_5895 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF3289); hypothetical protein 299386..300531 Treponema succinifaciens DSM 2489 10430363 YP_004364532.1 CDS Tresu_0276 NC_015385.1 300524 301033 D hypothetical protein 300524..301033 Treponema succinifaciens DSM 2489 10430364 YP_004364533.1 CDS Tresu_0277 NC_015385.1 301201 301827 D hypothetical protein 301201..301827 Treponema succinifaciens DSM 2489 10430365 YP_004364534.1 CDS Tresu_0278 NC_015385.1 301824 303041 D COGs: COG5184 alpha-tubulin suppressor and related RCC1 domain-containing protein; InterPro IPR000408; KEGG: ckn:Calkro_1724 regulator of chromosome condensation RCC1; PFAM: Regulator of chromosome condensation, RCC1; SPTR: alpha-tubulin suppressor; PFAM: Regulator of chromosome condensation (RCC1) repeat; chromosome condensation regulator RCC1 301824..303041 Treponema succinifaciens DSM 2489 10430366 YP_004364535.1 CDS Tresu_0279 NC_015385.1 303041 304006 D PFAM: Phage late control gene D protein (GPD); hypothetical protein 303041..304006 Treponema succinifaciens DSM 2489 10430367 YP_004364536.1 CDS Tresu_0280 NC_015385.1 304010 304372 D hypothetical protein 304010..304372 Treponema succinifaciens DSM 2489 10430368 YP_004364537.1 CDS Tresu_0281 NC_015385.1 304747 305658 R KEGG: fjo:Fjoh_0919 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(304747..305658) Treponema succinifaciens DSM 2489 10430369 YP_004364538.1 CDS Tresu_0282 NC_015385.1 305675 306004 R hypothetical protein complement(305675..306004) Treponema succinifaciens DSM 2489 10430370 YP_004364539.1 CDS Tresu_0283 NC_015385.1 306269 306910 D KEGG: ypy:YPK_2589 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 306269..306910 Treponema succinifaciens DSM 2489 10430371 YP_004364540.1 CDS Tresu_0284 NC_015385.1 306907 307419 D hypothetical protein 306907..307419 Treponema succinifaciens DSM 2489 10430372 YP_004364541.1 CDS Tresu_0285 NC_015385.1 307445 307948 D hypothetical protein 307445..307948 Treponema succinifaciens DSM 2489 10430373 YP_004364542.1 CDS Tresu_0286 NC_015385.1 307956 308117 R hypothetical protein complement(307956..308117) Treponema succinifaciens DSM 2489 10430374 YP_004364543.1 CDS Tresu_0287 NC_015385.1 308485 308943 R COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR011344; KEGG: caa:Caka_1586 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); single-strand binding protein complement(308485..308943) Treponema succinifaciens DSM 2489 10430375 YP_004364544.1 CDS Tresu_0288 NC_015385.1 309209 311080 D KEGG: tde:TDE0585 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 309209..311080 Treponema succinifaciens DSM 2489 10430376 YP_004364545.1 CDS Tresu_0289 NC_015385.1 311197 312252 D COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523; KEGG: kol:Kole_1762 Mg2 transporter protein CorA family protein; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Mg2 transporter protein CorA family protein; PFAM: CorA-like Mg2+ transporter protein; Mg2 transporter protein CorA family protein 311197..312252 Treponema succinifaciens DSM 2489 10430377 YP_004364546.1 CDS Tresu_0290 NC_015385.1 312249 313223 D COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: tde:TDE2101 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: Putative uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme; sulfatase-modifying factor protein 312249..313223 Treponema succinifaciens DSM 2489 10430378 YP_004364547.1 CDS Tresu_0291 NC_015385.1 313220 313675 D hypothetical protein 313220..313675 Treponema succinifaciens DSM 2489 10430379 YP_004364548.1 CDS Tresu_0292 NC_015385.1 313742 315163 D COGs: COG0015 adenylosuccinate lyase; InterPro IPR022761; KEGG: tde:TDE1499 adenylosuccinate lyase, ATPase AAA; PFAM: Lyase 1, N-terminal; PRIAM: adenylosuccinate lyase; SPTR: adenylosuccinate lyase, ATPase AAA; PFAM: Lyase; adenylosuccinate lyase 313742..315163 Treponema succinifaciens DSM 2489 10430380 YP_004364549.1 CDS Tresu_0293 NC_015385.1 315173 316300 D COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: ssm:Spirs_2127 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; oxidoreductase domain-containing protein 315173..316300 Treponema succinifaciens DSM 2489 10430381 YP_004364550.1 CDS Tresu_0294 NC_015385.1 316642 317307 D COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: tde:TDE2607 hypothetical protein; PFAM: Outer membrane lipoprotein carrier protein LolA; SPTR: Putative uncharacterized protein; PFAM: Outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 316642..317307 Treponema succinifaciens DSM 2489 10430382 YP_004364551.1 CDS Tresu_0295 NC_015385.1 317311 318426 D COGs: COG1426 conserved hypothetical protein; KEGG: tde:TDE2608 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 317311..318426 Treponema succinifaciens DSM 2489 10430383 YP_004364552.1 CDS Tresu_0296 NC_015385.1 318419 319873 D COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR013848:IPR007197:IPR005839:IPR006638; KEGG: tde:TDE2609 ATPase AAA tRNA modifying protein; PFAM: methylthiotransferase, N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; TIGRFAM: methylthiotransferase; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; radical SAM methylthiotransferase, MiaB/RimO family; MiaB family RNA modification protein 318419..319873 Treponema succinifaciens DSM 2489 10430384 YP_004364553.1 CDS Tresu_0297 NC_015385.1 319870 322080 D COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: tde:TDE2335 ATP-dependent DNA helicase UvrD; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase, UvrD/Rep family; PFAM: UvrD/REP helicase; Viral (Superfamily 1) RNA helicase; UvrD/REP helicase 319870..322080 Treponema succinifaciens DSM 2489 10430385 YP_004364554.1 CDS Tresu_0298 NC_015385.1 322077 323105 D COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: ttm:Tthe_0701 ApbE family lipoprotein; PFAM: Thiamine synthesis ApbE/UPF0280; SPTR: ApbE family lipoprotein; PFAM: ApbE family; ApbE family lipoprotein 322077..323105 Treponema succinifaciens DSM 2489 10430386 YP_004364555.1 CDS Tresu_0299 NC_015385.1 323167 324504 D COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: ere:EUBREC_1419 Na+-dependent transporters of the SNF family; PFAM: Sodium:neurotransmitter symporter; SPTR: Transporter; PFAM: Sodium:neurotransmitter symporter family; sodium:neurotransmitter symporter 323167..324504 Treponema succinifaciens DSM 2489 10430387 YP_004364556.1 CDS Tresu_0300 NC_015385.1 324589 325356 R KEGG: bfs:BF4136 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial DNA-binding protein; hypothetical protein complement(324589..325356) Treponema succinifaciens DSM 2489 10430388 YP_004364557.1 CDS Tresu_0301 NC_015385.1 325603 326193 R InterPro IPR010359; KEGG: clo:HMPREF0868_0163 toxin-antitoxin system, toxin component family protein; PFAM: protein of unknown function DUF955; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF955); hypothetical protein complement(325603..326193) Treponema succinifaciens DSM 2489 10430389 YP_004364558.1 CDS Tresu_0302 NC_015385.1 326206 326625 R InterPro IPR001387; KEGG: bpb:bpr_II114 HTH domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix; PFAM: Helix-turn-helix; hypothetical protein complement(326206..326625) Treponema succinifaciens DSM 2489 10430390 YP_004364559.1 CDS Tresu_0303 NC_015385.1 326938 330486 D InterPro IPR006935:IPR001650:IPR014001; KEGG: bth:BT_4628 ATP-dependent helicase; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: Type III restriction enzyme, res subunit family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; helicase 326938..330486 Treponema succinifaciens DSM 2489 10430391 YP_004364560.1 CDS Tresu_0304 NC_015385.1 330502 333537 D InterPro IPR011639; KEGG: bth:BT_4627 DNA modification methylase; SPTR: DNA modification methylase; PFAM: Eco57I restriction endonuclease; TIGRFAM: type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family; hypothetical protein 330502..333537 Treponema succinifaciens DSM 2489 10430392 YP_004364561.1 CDS Tresu_0305 NC_015385.1 333565 334362 R KEGG: pnu:Pnuc_1117 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(333565..334362) Treponema succinifaciens DSM 2489 10430393 YP_004364562.1 CDS Tresu_0306 NC_015385.1 334359 335459 R KEGG: pnu:Pnuc_1118 SMC domain-containing protein; SPTR: SMC domain protein; SMC domain-containing protein complement(334359..335459) Treponema succinifaciens DSM 2489 10430394 YP_004364563.1 CDS Tresu_0307 NC_015385.1 335756 336184 R hypothetical protein complement(335756..336184) Treponema succinifaciens DSM 2489 10430395 YP_004364564.1 CDS Tresu_0308 NC_015385.1 336184 336888 R InterPro IPR022452; KEGG: amt:Amet_0867 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Zinc finger/helix-turn-helix protein, YgiT; TIGRFAM: ATPase AAA zinc finger/helix-turn-helix protein, YgiT family; YgiT family zinc finger/helix-turn-helix protein complement(336184..336888) Treponema succinifaciens DSM 2489 10430396 YP_004364565.1 CDS Tresu_0309 NC_015385.1 336881 337219 R hypothetical protein complement(336881..337219) Treponema succinifaciens DSM 2489 10430397 YP_004364566.1 CDS Tresu_0310 NC_015385.1 337319 338524 R KEGG: bth:BT_4625 DNA modification methylase BstVI; SPTR: Type II restriction-modification enzyme; PFAM: Eco57I restriction endonuclease; DNA modification methylase BstVI complement(337319..338524) Treponema succinifaciens DSM 2489 10430398 YP_004364567.1 CDS Tresu_0311 NC_015385.1 338553 339158 R COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR006120; KEGG: bth:BT_4624 multiple promoter invertase; PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix domain; SMART: Resolvase, N-terminal; SPTR: serine type site-specific recombinase; PFAM: Resolvase, N terminal domain; Helix-turn-helix domain of resolvase; resolvase complement(338553..339158) Treponema succinifaciens DSM 2489 10430399 YP_004364568.1 CDS Tresu_0313 NC_015385.1 339708 340679 R InterPro IPR013378; KEGG: ssm:Spirs_1955 cell wall/surface repeat protein; PFAM: Listeria/Bacterioides repeat; SPTR: Cell wall/surface repeat protein; TIGRFAM: Listeria/Bacterioides repeat; PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); TIGRFAM: Listeria/Bacterioides repeat; cell wall/surface repeat protein complement(339708..340679) Treponema succinifaciens DSM 2489 10430401 YP_004364569.1 CDS Tresu_0314 NC_015385.1 340794 341096 R InterPro IPR013378; KEGG: ssm:Spirs_1955 cell wall/surface repeat protein; PFAM: Listeria/Bacterioides repeat; SPTR: Transmembrane protein, ATPase AAA; PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); Listeria/Bacterioides repeat-containing protein complement(340794..341096) Treponema succinifaciens DSM 2489 10430402 YP_004364570.1 CDS Tresu_0315 NC_015385.1 341320 342618 R COGs: COG1373 ATPase (AAA+ superfamily); KEGG: fnu:FN1101 ATPase; SPTR: Putative uncharacterized protein; PFAM: Archaeal ATPase; ATPase complement(341320..342618) Treponema succinifaciens DSM 2489 10430403 YP_004364571.1 CDS Tresu_0316 NC_015385.1 342850 343263 D COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: csh:Closa_0146 ferric uptake regulator, Fur family; SPTR: Fe2+/Zn2+ uptake regulation proteins; manually curated; PFAM: Ferric uptake regulator family; ferric uptake regulator, Fur family 342850..343263 Treponema succinifaciens DSM 2489 10430404 YP_004364572.1 CDS Tresu_0317 NC_015385.1 343260 343571 D SPTR: Outer membrane lipoprotein-sorting protein; hypothetical protein 343260..343571 Treponema succinifaciens DSM 2489 10430405 YP_004364573.1 CDS Tresu_0318 NC_015385.1 343856 345436 D COGs: COG3443 periplasmic or secreted protein; InterPro IPR015304:IPR006127; KEGG: shi:Shel_18230 ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: YodA; ABC transporter metal-binding lipoprotein; SPTR: YodA domain protein; PFAM: YodA; Periplasmic solute binding protein family; YodA domain-containing protein 343856..345436 Treponema succinifaciens DSM 2489 10430406 YP_004364574.1 CDS Tresu_0319 NC_015385.1 345615 346442 D COGs: COG1876 D-alanyl-D-alanine carboxypeptidase; InterPro IPR003709; KEGG: tde:TDE0633 D-alanyl-D-alanine carboxypeptidase, ATPase AAA; PFAM: peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; SPTR: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; PFAM: D-alanyl-D-alanine carboxypeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 345615..346442 Treponema succinifaciens DSM 2489 10430407 YP_004364575.1 CDS Tresu_0320 NC_015385.1 346453 347151 D COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: csh:Closa_0143 ABC transporter; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type Mn/Zn transport systems, ATPase component; PFAM: ABC transporter; phosphonate-transporting ATPase 346453..347151 Treponema succinifaciens DSM 2489 10430408 YP_004364576.1 CDS Tresu_0322 NC_015385.1 348011 348709 D KEGG: fsu:Fisuc_1195 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 348011..348709 Treponema succinifaciens DSM 2489 10430410 YP_004364577.1 CDS Tresu_0323 NC_015385.1 348866 349657 R InterPro IPR002559; KEGG: pna:Pnap_4096 transposase, IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Putative transposase; PFAM: Transposase DDE domain; transposase IS4 family protein complement(348866..349657) Treponema succinifaciens DSM 2489 10430411 YP_004364578.1 CDS Tresu_0324 NC_015385.1 349755 349880 R hypothetical protein complement(349755..349880) Treponema succinifaciens DSM 2489 10430412 YP_004364579.1 CDS Tresu_0325 NC_015385.1 349886 350539 R hypothetical protein complement(349886..350539) Treponema succinifaciens DSM 2489 10430413 YP_004364580.1 CDS Tresu_0326 NC_015385.1 350536 351381 R KEGG: fsu:Fisuc_0133 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(350536..351381) Treponema succinifaciens DSM 2489 10430414 YP_004364581.1 CDS Tresu_0327 NC_015385.1 351393 352118 R COGs: COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478 contains von Willebrand factor (vWF) domain; InterPro IPR002035; KEGG: fsu:Fisuc_0134 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SPTR: Putative uncharacterized protein; PFAM: von Willebrand factor type A domain; von Willebrand factor A complement(351393..352118) Treponema succinifaciens DSM 2489 10430415 YP_004364582.1 CDS Tresu_0328 NC_015385.1 352142 353440 R COGs: COG0515 serine/threonine protein kinase; InterPro IPR002290; KEGG: fsu:Fisuc_0135 serine/threonine protein kinase; SMART: serine/threonine-protein kinase domain; SPTR: Putative uncharacterized protein; PFAM: protein kinase domain; serine/threonine protein kinase complement(352142..353440) Treponema succinifaciens DSM 2489 10430416 YP_004364583.1 CDS Tresu_0329 NC_015385.1 353443 353847 R KEGG: shi:Shel_03930 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(353443..353847) Treponema succinifaciens DSM 2489 10430417 YP_004364584.1 CDS Tresu_0330 NC_015385.1 353844 354176 R hypothetical protein complement(353844..354176) Treponema succinifaciens DSM 2489 10430418 YP_004364585.1 CDS Tresu_0331 NC_015385.1 354239 354835 R KEGG: cst:CLOST_2486 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(354239..354835) Treponema succinifaciens DSM 2489 10430419 YP_004364586.1 CDS Tresu_0332 NC_015385.1 354909 355823 R hypothetical protein complement(354909..355823) Treponema succinifaciens DSM 2489 10430420 YP_004364587.1 CDS Tresu_0333 NC_015385.1 355829 356449 R PFAM: CRISPR-associated protein (cas_TM1812); hypothetical protein complement(355829..356449) Treponema succinifaciens DSM 2489 10430421 YP_004364588.1 CDS Tresu_0334 NC_015385.1 356463 356876 R hypothetical protein complement(356463..356876) Treponema succinifaciens DSM 2489 10430422 YP_004364589.1 CDS Tresu_0335 NC_015385.1 356978 357745 D hypothetical protein 356978..357745 Treponema succinifaciens DSM 2489 10430423 YP_004364590.1 CDS Tresu_0336 NC_015385.1 358552 359022 D InterPro IPR000182; KEGG: ere:EUBREC_2983 hypothetical protein; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Acetyltransferases; PFAM: Acetyltransferase (GNAT) family; GCN5-related N-acetyltransferase 358552..359022 Treponema succinifaciens DSM 2489 10430424 YP_004364591.1 CDS Tresu_0337 NC_015385.1 359035 359853 D COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: tde:TDE0674 hypothetical protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing; SPTR: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; PFAM: Macro domain; Appr-1-p processing domain-containing protein 359035..359853 Treponema succinifaciens DSM 2489 10430425 YP_004364592.1 CDS Tresu_0338 NC_015385.1 359893 361380 R COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR006005; KEGG: ere:EUBREC_2273 glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: glutamate synthase (NADH); SPTR: Putative uncharacterized protein; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit 1; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; glutamate synthase NADH/NADPH small subunit complement(359893..361380) Treponema succinifaciens DSM 2489 10430426 YP_004364593.1 CDS Tresu_0339 NC_015385.1 361401 365924 R COGs: COG0069 glutamate synthase domain 2; InterPro IPR000583:IPR006982:IPR002932:IPR002489; KEGG: bpb:bpr_I0123 glutamate synthase large subunit GltB; PFAM: glutamate synthase, central-C; glutamine amidotransferase, class-II; glutamate synthase, central-N; glutamate synthase, alpha subunit, C-terminal; PRIAM: glutamate synthase (ferredoxin); SPTR: glutamate synthase large subunit GltB; PFAM: Conserved region in glutamate synthase; GXGXG motif; glutamate synthase central domain; glutamine amidotransferases class-II; glutamate synthase complement(361401..365924) Treponema succinifaciens DSM 2489 10430427 YP_004364594.1 CDS Tresu_0340 NC_015385.1 366135 366554 R InterPro IPR010739; KEGG: ssm:Spirs_0286 protein of unknown function DUF1312; PFAM: protein of unknown function DUF1312; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF1312); hypothetical protein complement(366135..366554) Treponema succinifaciens DSM 2489 10430428 YP_004364595.1 CDS Tresu_0341 NC_015385.1 366722 367435 D KEGG: sta:STHERM_c19270 rhomboid-like protein; SPTR: Rhomboid-like protein; PFAM: Rhomboid family; rhomboid-like protein 366722..367435 Treponema succinifaciens DSM 2489 10430429 YP_004364596.1 CDS Tresu_0342 NC_015385.1 367520 368602 D COGs: COG0205 6-phosphofructokinase; HAMAP: phosphofructokinase; InterPro IPR000023:IPR022953; KEGG: sta:STHERM_c00290 6-phosphofructokinase 3; PFAM: phosphofructokinase domain; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; PFAM: phosphofructokinase; TIGRFAM: phosphofructokinase; 6-phosphofructokinase 367520..368602 Treponema succinifaciens DSM 2489 10430430 YP_004364597.1 CDS Tresu_0343 NC_015385.1 368592 369443 D COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; KEGG: tpp:TPASS_0291 hypothetical protein; SPTR: FMN-dependent dehydrogenase family protein; manually curated; PFAM: FMN-dependent dehydrogenase; hypothetical protein 368592..369443 Treponema succinifaciens DSM 2489 10430431 YP_004364598.1 CDS Tresu_0344 NC_015385.1 369454 370110 D COGs: COG4684 membrane protein; KEGG: cac:CA_C0331 hypothetical protein; SPTR: Uncharacterized membrane protein, homolog of YPAA B.subtilis; hypothetical protein 369454..370110 Treponema succinifaciens DSM 2489 10430432 YP_004364599.1 CDS Tresu_0345 NC_015385.1 370167 370934 D COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537; KEGG: tde:TDE2713 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding; SPTR: RNA methyltransferase, TrmH family; PFAM: SpoU rRNA methylase family; RNA 2'-O ribose methyltransferase substrate binding; tRNA/rRNA methyltransferase SpoU 370167..370934 Treponema succinifaciens DSM 2489 10430433 YP_004364600.1 CDS Tresu_0346 NC_015385.1 370936 371778 D InterPro IPR000326; KEGG: sli:Slin_1798 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: phosphoesterase PA-phosphatase related protein; PFAM: PAP2 superfamily; phosphoesterase PA-phosphatase-like protein 370936..371778 Treponema succinifaciens DSM 2489 10430434 YP_004364601.1 CDS Tresu_0347 NC_015385.1 371781 372779 R InterPro IPR004089:IPR004010; KEGG: hmo:HM1_1061 methyl-accepting chemotaxis protein; PFAM: Cache; Chemotaxis methyl-accepting receptor, signalling; SPTR: methyl-accepting chemotaxis protein; PFAM: Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain; Cache domain-containing protein complement(371781..372779) Treponema succinifaciens DSM 2489 10430435 YP_004364602.1 CDS Tresu_0348 NC_015385.1 373009 373905 D COGs: COG5401 Spore germination protein; InterPro IPR019606; KEGG: tde:TDE2081 hypothetical protein; PFAM: GerMN domain; SMART: GerMN domain; SPTR: Putative uncharacterized protein; PFAM: Sporulation and spore germination; lipoprotein LpqB, GerMN domain protein 373009..373905 Treponema succinifaciens DSM 2489 10430436 YP_004364603.1 CDS Tresu_0349 NC_015385.1 373908 374966 R KEGG: tde:TDE2221 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(373908..374966) Treponema succinifaciens DSM 2489 10430437 YP_004364604.1 CDS Tresu_0350 NC_015385.1 374993 376804 R COGs: COG0442 Prolyl-tRNA synthetase; HAMAP: Prolyl-tRNA synthetase, class IIa, bacterial; InterPro IPR002314:IPR007214:IPR004154:IPR004500; KEGG: tde:TDE2220 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; Anticodon-binding; SPTR: Prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; PFAM: YbaK / prolyl-tRNA synthetases associated domain; Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II; prolyl-tRNA synthetase complement(374993..376804) Treponema succinifaciens DSM 2489 10430438 YP_004364605.1 CDS Tresu_0351 NC_015385.1 376958 377416 D COGs: COG1516 flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: sta:STHERM_c02390 ATPase AAA flagellar protein FliS; PFAM: flagellar protein FliS; SPTR: flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS; flagellar protein FliS 376958..377416 Treponema succinifaciens DSM 2489 10430439 YP_004364606.1 CDS Tresu_0352 NC_015385.1 377475 377963 D KEGG: tde:TDE0118 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 377475..377963 Treponema succinifaciens DSM 2489 10430440 YP_004364607.1 CDS Tresu_0353 NC_015385.1 377985 378620 D InterPro IPR001647; KEGG: coc:Coch_0387 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family protein; PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator 377985..378620 Treponema succinifaciens DSM 2489 10430441 YP_004364608.1 CDS Tresu_0354 NC_015385.1 378683 380776 D COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR003594:IPR013506:IPR001241; KEGG: tde:TDE2245 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: Topoisomerase IV, B subunit, ATPase AAA; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; DNA topoisomerase type IIA subunit B domain-containing protein 378683..380776 Treponema succinifaciens DSM 2489 10430442 YP_004364609.1 CDS Tresu_0355 NC_015385.1 380787 382766 D COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205:IPR019352; KEGG: tde:TDE2118 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; protein of unknown function DUF2054; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: Topoisomerase IV, A subunit, ATPase AAA; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA topoisomerase 380787..382766 Treponema succinifaciens DSM 2489 10430443 YP_004364610.1 CDS Tresu_0356 NC_015385.1 382789 383691 D hypothetical protein 382789..383691 Treponema succinifaciens DSM 2489 10430444 YP_004364611.1 CDS Tresu_0357 NC_015385.1 383675 384262 D COGs: COG1739 conserved hypothetical protein; InterPro IPR001498; KEGG: tde:TDE1321 hypothetical protein; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein family UPF0029; Domain of unknown function (DUF1949); TIGRFAM: uncharacterized protein, YigZ family; hypothetical protein 383675..384262 Treponema succinifaciens DSM 2489 10430445 YP_004364612.1 CDS Tresu_0359 NC_015385.1 385110 386330 D COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; HAMAP: tRNA-specific 2-thiouridylase; InterPro IPR004506; KEGG: emi:Emin_0088 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA-specific 2-thiouridylase; SPTR: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; TIGRFAM: tRNA-specific 2-thiouridylase; manually curated; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA-specific 2-thiouridylase mnmA 385110..386330 Treponema succinifaciens DSM 2489 10430447 YP_004364613.1 CDS Tresu_0360 NC_015385.1 386327 387190 R InterPro IPR016047; KEGG: tde:TDE1929 hypothetical protein; PFAM: peptidase M23; SPTR: M23 peptidase domain protein; PFAM: peptidase family M23; peptidase M23 complement(386327..387190) Treponema succinifaciens DSM 2489 10430448 YP_004364614.1 CDS Tresu_0361 NC_015385.1 387281 388345 R KEGG: tde:TDE1930 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(387281..388345) Treponema succinifaciens DSM 2489 10430449 YP_004364615.1 CDS Tresu_0362 NC_015385.1 388625 388840 D hypothetical protein 388625..388840 Treponema succinifaciens DSM 2489 10430450 YP_004364616.1 CDS Tresu_0363 NC_015385.1 388978 390123 D hypothetical protein 388978..390123 Treponema succinifaciens DSM 2489 10430451 YP_004364617.1 CDS Tresu_0364 NC_015385.1 390364 391362 R COGs: COG3943 Virulence protein; InterPro IPR003812; KEGG: dap:Dacet_2826 death-on-curing family protein; PFAM: Filamentation induced by cAMP/death on curing-related; SPTR: Death-on-curing family protein; PFAM: Fic/DOC family; filamentation induced by cAMP protein fic complement(390364..391362) Treponema succinifaciens DSM 2489 10430452 YP_004364618.1 CDS Tresu_0367 NC_015385.1 393310 394764 D COGs: COG0423 glycyl-tRNA synthetase (class II); InterPro IPR002314:IPR004154:IPR002315; KEGG: tde:TDE0020 glycyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; SPTR: glycyl-tRNA synthetase; TIGRFAM: glycyl-tRNA synthetase, alpha2 dimer; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type; glycyl-tRNA synthetase 393310..394764 Treponema succinifaciens DSM 2489 10430455 YP_004364619.1 CDS Tresu_0368 NC_015385.1 394882 395664 D COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: msi:Msm_1450 aldo/keto reductase family oxidoreductase; PFAM: NADP-dependent oxidoreductase domain; SPTR: Oxidoreductase, aldo/keto reductase family; PFAM: Aldo/keto reductase family; NADP-dependent oxidoreductase domain-containing protein 394882..395664 Treponema succinifaciens DSM 2489 10430456 YP_004364620.1 CDS Tresu_0370 NC_015385.1 396913 397242 D hypothetical protein 396913..397242 Treponema succinifaciens DSM 2489 10430458 YP_004364621.1 CDS Tresu_0371 NC_015385.1 397259 398170 D KEGG: fjo:Fjoh_0919 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 397259..398170 Treponema succinifaciens DSM 2489 10430459 YP_004364622.1 CDS Tresu_0372 NC_015385.1 399722 401539 R COGs: COG2604 conserved hypothetical protein; InterPro IPR002826; KEGG: tde:TDE1315 hypothetical protein; PFAM: protein of unknown function DUF115; SPTR: Conserved domain protein; PFAM: protein of unknown function DUF115; hypothetical protein complement(399722..401539) Treponema succinifaciens DSM 2489 10430460 YP_004364623.1 CDS Tresu_0373 NC_015385.1 401520 403394 R COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR005543; KEGG: tde:TDE1314 penicillin-binding protein; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA; PRIAM: peptidoglycan glycosyltransferase; SMART: PASTA; SPTR: Penicillin-binding protein; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding protein dimerisation domain; PASTA domain; peptidoglycan glycosyltransferase complement(401520..403394) Treponema succinifaciens DSM 2489 10430461 YP_004364624.1 CDS Tresu_0374 NC_015385.1 403391 403900 R InterPro IPR019759:IPR000223; KEGG: tde:TDE1313 signal peptidase I; PFAM: peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: peptidase S26A, signal peptidase I; PFAM: peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; signal peptidase I complement(403391..403900) Treponema succinifaciens DSM 2489 10430462 YP_004364625.1 CDS Tresu_0375 NC_015385.1 403961 405169 D COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR018392:IPR016047:IPR002482; KEGG: tde:TDE2753 LysM/M23/M37 peptidase; PFAM: peptidase M23; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup; SPTR: LysM domain/M23/M37 peptidase domain protein; PFAM: peptidase family M23; LysM domain; peptidase M23 403961..405169 Treponema succinifaciens DSM 2489 10430463 YP_004364626.1 CDS Tresu_0376 NC_015385.1 405188 407410 D InterPro IPR002509; KEGG: tde:TDE2434 polysaccharide deacetylase family protein; PFAM: polysaccharide deacetylase; SPTR: polysaccharide deacetylase family protein; PFAM: WD40-like beta Propeller Repeat; polysaccharide deacetylase; polysaccharide deacetylase 405188..407410 Treponema succinifaciens DSM 2489 10430464 YP_004364627.1 CDS Tresu_0377 NC_015385.1 407483 408151 D KEGG: tde:TDE1228 pentapeptide repeat-containing protein; SPTR: Pentapeptide repeat family protein; hypothetical protein 407483..408151 Treponema succinifaciens DSM 2489 10430465 YP_004364628.1 CDS Tresu_0378 NC_015385.1 408148 408714 D COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: ssm:Spirs_2469 hypothetical protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like; SPTR: GloB protein; PFAM: Metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein 408148..408714 Treponema succinifaciens DSM 2489 10430466 YP_004364629.1 CDS Tresu_0379 NC_015385.1 408718 410469 R KEGG: ssm:Spirs_2772 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(408718..410469) Treponema succinifaciens DSM 2489 10430467 YP_004364630.1 CDS Tresu_0380 NC_015385.1 410515 410961 D hypothetical protein 410515..410961 Treponema succinifaciens DSM 2489 10430468 YP_004364631.1 CDS Tresu_0381 NC_015385.1 410965 411456 R COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR002912:IPR019455:IPR004789; KEGG: cbe:Cbei_0212 acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT; SPTR: Acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit; acetolactate synthase small subunit complement(410965..411456) Treponema succinifaciens DSM 2489 10430469 YP_004364632.1 CDS Tresu_0382 NC_015385.1 411490 413430 R COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR001086:IPR002912:IPR006268; KEGG: ssm:Spirs_0275 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; Prephenate dehydratase; Amino acid-binding ACT; PRIAM: 3-deoxy-7-phosphoheptulonate synthase., Prephenate dehydratase; SPTR: phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; PFAM: Prephenate dehydratase; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; phospho-2-dehydro-3-deoxyheptonate aldolase complement(411490..413430) Treponema succinifaciens DSM 2489 10430470 YP_004364633.1 CDS Tresu_0383 NC_015385.1 413543 416035 R COGs: COG0527 aspartokinase; InterProIPR001048:IPR002912:IPR005106:IPR001342:IPR 001341; KEGG: vfm:VFMJ11_2224 bifunctional aspartokinase I/homeserine dehydrogenase I; PFAM: Homoserine dehydrogenase, catalytic; aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; aspartate/homoserine dehydrogenase, NAD-binding; SPTR: Fused aspartokinase I and homoserine dehydrogenase I; TIGRFAM: aspartate kinase domain; PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain; ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase; aspartate kinase complement(413543..416035) Treponema succinifaciens DSM 2489 10430471 YP_004364634.1 CDS Tresu_0384 NC_015385.1 416828 417568 D hypothetical protein 416828..417568 Treponema succinifaciens DSM 2489 10430472 YP_004364635.1 CDS Tresu_0385 NC_015385.1 417565 418503 D COGs: COG1409 phosphohydrolase; InterPro IPR004843; KEGG: tde:TDE1698 serine/threonine protein phosphatase family protein; PFAM: Metallo-dependent phosphatase; SPTR: serine/threonine protein phosphatase family protein; PFAM: Calcineurin-like phosphoesterase; metallophosphoesterase 417565..418503 Treponema succinifaciens DSM 2489 10430473 YP_004364636.1 CDS Tresu_0386 NC_015385.1 418551 418961 R COGs: COG1186 protein chain release factor B; InterPro IPR000352; KEGG: cts:Ctha_2644 class I peptide chain release factor; PFAM: peptide chain release factor class I/class II; SPTR: Class I peptide chain release factor; PFAM: RF-1 domain; class I peptide chain release factor complement(418551..418961) Treponema succinifaciens DSM 2489 10430474 YP_004364637.1 CDS Tresu_0387 NC_015385.1 419047 420141 R COGs: COG0136 aspartate-semialdehyde dehydrogenase; InterPro IPR000534:IPR012280:IPR005676; KEGG: cpy:Cphy_0426 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding; PRIAM: aspartate-semialdehyde dehydrogenase; SMART: Semialdehyde dehydrogenase, NAD-binding; SPTR: Putative uncharacterized protein; TIGRFAM: aspartate-semialdehyde dehydrogenase, peptidoglycan lacking; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms); aspartate-semialdehyde dehydrogenase complement(419047..420141) Treponema succinifaciens DSM 2489 10430475 YP_004364638.1 CDS Tresu_0388 NC_015385.1 420191 421105 R COGs: COG0329 dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: dihydrodipicolinate synthase; InterPro IPR002220:IPR005263; KEGG: pcu:pc0686 ATPase AAA dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; PRIAM: dihydrodipicolinate synthase; SPTR: dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase subfamily; PFAM: dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase; dihydrodipicolinate synthase complement(420191..421105) Treponema succinifaciens DSM 2489 10430476 YP_004364639.1 CDS Tresu_0389 NC_015385.1 421415 423595 D COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: fbl:Fbal_3385 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator 421415..423595 Treponema succinifaciens DSM 2489 10430477 YP_004364640.1 CDS Tresu_0390 NC_015385.1 423638 424699 D COGs: COG0082 Chorismate synthase; InterPro IPR000453; KEGG: ssm:Spirs_1446 chorismate synthase; PFAM: Chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: Chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase; chorismate synthase 423638..424699 Treponema succinifaciens DSM 2489 10430478 YP_004364641.1 CDS Tresu_0391 NC_015385.1 424702 426141 D COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; InterPro IPR001967; KEGG: tde:TDE0979 penicillin binding protein; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; PRIAM: serine-type D-Ala-D-Ala carboxypeptidase; SPTR: D-alanyl-D-alanine carboxypeptidase DacA; PFAM: D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5, C-terminal domain; serine-type D-Ala-D-Ala carboxypeptidase 424702..426141 Treponema succinifaciens DSM 2489 10430479 YP_004364642.1 CDS Tresu_0392 NC_015385.1 426169 427005 D COGs: COG0796 glutamate racemase; HAMAP: glutamate racemase; InterPro IPR015942:IPR004391; KEGG: tde:TDE1448 glutamate racemase, ATPase AAA; PFAM: Asp/Glu/hydantoin racemase; PRIAM: glutamate racemase; SPTR: glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase; glutamate racemase 426169..427005 Treponema succinifaciens DSM 2489 10430480 YP_004364643.1 CDS Tresu_0393 NC_015385.1 427025 428227 R COGs: COG0538 Isocitrate dehydrogenase; InterPro IPR001804:IPR004790; KEGG: bpb:bpr_I1102 isocitrate dehydrogenase Icd; PFAM: Isocitrate/isopropylmalate dehydrogenase; SPTR: Probable isocitrate dehydrogenase [NADP]; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, eukaryotic; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, eukaryotic type; isocitrate dehydrogenase complement(427025..428227) Treponema succinifaciens DSM 2489 10430481 YP_004364644.1 CDS Tresu_0394 NC_015385.1 428265 429044 R COGs: COG0024 methionine aminopeptidase; InterPro IPR000994:IPR002467; KEGG: tde:TDE1733 methionine aminopeptidase, type I; PFAM: peptidase M24, structural domain; PRIAM: methionyl aminopeptidase; SPTR: methionine aminopeptidase; TIGRFAM: peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I; methionine aminopeptidase complement(428265..429044) Treponema succinifaciens DSM 2489 10430482 YP_004364645.1 CDS Tresu_0395 NC_015385.1 429064 429828 R COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623; KEGG: tde:TDE1732 hypothetical protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: DnaJ domain protein; PFAM: DnaJ domain; heat shock protein DnaJ domain-containing protein complement(429064..429828) Treponema succinifaciens DSM 2489 10430483 YP_004364646.1 CDS Tresu_0396 NC_015385.1 429975 430289 D COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; InterPro IPR003837; KEGG: tde:TDE0577 glutamyl-tRNA(Gln) amidotransferase, C subunit; SPTR: glutamyl-tRNA(Gln) amidotransferase, C subunit; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 429975..430289 Treponema succinifaciens DSM 2489 10430484 YP_004364647.1 CDS Tresu_0397 NC_015385.1 430291 431796 D COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; HAMAP: glutamyl-tRNA(Gln) amidotransferase A subunit; InterPro IPR000120:IPR004412; KEGG: tde:TDE0576 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; SPTR: glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase A subunit; PFAM: Amidase; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; glutamyl-tRNA(Gln) amidotransferase subunit A 430291..431796 Treponema succinifaciens DSM 2489 10430485 YP_004364648.1 CDS Tresu_0398 NC_015385.1 431799 433340 D COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); HAMAP: glutamyl-tRNA(Gln) amidotransferase, B subunit; InterPro IPR006075:IPR018027:IPR004413; KEGG: tde:TDE0575 aspartyl/glutamyl-tRNA amidotransferase subunit B; PFAM: glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase; SMART: Asn/Gln amidotransferase; SPTR: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 431799..433340 Treponema succinifaciens DSM 2489 10430486 YP_004364649.1 CDS Tresu_0399 NC_015385.1 433582 434151 D KEGG: bpo:BP951000_1618 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 433582..434151 Treponema succinifaciens DSM 2489 10430487 YP_004364650.1 CDS Tresu_0400 NC_015385.1 434159 434575 D COGs: COG0716 Flavodoxins; InterPro IPR008254:IPR010087; KEGG: cac:CA_C0587 flavodoxin; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Flavodoxin, short chain; TIGRFAM: Flavodoxin, short chain; PFAM: Flavodoxin; TIGRFAM: flavodoxin, short chain; flavodoxin 434159..434575 Treponema succinifaciens DSM 2489 10430488 YP_004364651.1 CDS Tresu_0401 NC_015385.1 434723 434992 R COGs: COG3830 ACT domain-containing protein; HAMAP: Uncharacterised protein family UPF0237, ACT domain-containing; InterPro IPR002912:IPR022986; KEGG: lsl:LSL_0161 hypothetical protein; PFAM: Amino acid-binding ACT; SPTR: UPF0237 protein POTG_03406; PFAM: ACT domain; ACT domain-containing protein complement(434723..434992) Treponema succinifaciens DSM 2489 10430489 YP_004364652.1 CDS Tresu_0402 NC_015385.1 435100 437871 R COGs: COG1472 beta-glucosidase-related glycosidase; InterPro IPR002772:IPR001764; KEGG: pin:Ping_2107 glycoside hydrolase family 3 protein; PFAM: glycoside hydrolase, family 3, N-terminal; glycoside hydrolase, family 3, C-terminal; PRIAM: beta-glucosidase; SPTR: Putative uncharacterized protein; PFAM: glycosyl hydrolase family 3 C terminal domain; glycosyl hydrolase family 3 N terminal domain; beta-glucosidase complement(435100..437871) Treponema succinifaciens DSM 2489 10430490 YP_004364653.1 CDS Tresu_0403 NC_015385.1 438018 438905 D COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR013096:IPR000005:IPR018060; KEGG: cbe:Cbei_3440 helix-turn-helix domain-containing protein; PFAM: Cupin 2, conserved barrel; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: hypothetical protein; PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family; AraC family transcriptional regulator 438018..438905 Treponema succinifaciens DSM 2489 10430491 YP_004364654.1 CDS Tresu_0404 NC_015385.1 438993 439439 D COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178; KEGG: tpp:TPASS_0085 PTS system, nitrogen regulatory IIA component; PFAM: phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; SPTR: PTS system, IIA component; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS IIA-like nitrogen-regulatory protein PtsN 438993..439439 Treponema succinifaciens DSM 2489 10430492 YP_004364655.1 CDS Tresu_0405 NC_015385.1 439610 440566 D COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR014043:IPR020801; KEGG: tde:TDE0601 malonyl CoA-acyl carrier protein transacylase, ATPase AAA; PFAM: acyl transferase; PRIAM: [acyl-carrier-protein] S-malonyltransferase; SMART: polyketide synthase, acyl transferase domain; SPTR: Malonyl CoA-acyl carrier protein transacylase, ATPase AAA; PFAM: acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; ACP S-malonyltransferase 439610..440566 Treponema succinifaciens DSM 2489 10430493 YP_004364656.1 CDS Tresu_0406 NC_015385.1 440584 441327 D COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR020842; KEGG: tde:TDE0598 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SMART: polyketide synthase/Fatty acid synthase, KR; SPTR: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase 440584..441327 Treponema succinifaciens DSM 2489 10430494 YP_004364657.1 CDS Tresu_0407 NC_015385.1 441381 442628 D COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR017568:IPR020841; KEGG: tde:TDE0038 3-oxoacyl-(acyl-carrier-protein) synthase II; PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal; PRIAM: beta-ketoacyl-acyl-carrier-protein synthase II; SMART: polyketide synthase, beta-ketoacyl synthase domain; SPTR: 3-oxoacyl-(acyl-carrier-protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase, N-terminal domain; beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II; 3-oxoacyl-ACP synthase II 441381..442628 Treponema succinifaciens DSM 2489 10430495 YP_004364658.1 CDS Tresu_0408 NC_015385.1 442633 443064 D COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR013114; KEGG: tde:TDE0823 (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase, ATPase AAA; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase, ATPase AAA; PFAM: FabA-like domain; 3-hydroxyacyl-ACP dehydratase 442633..443064 Treponema succinifaciens DSM 2489 10430496 YP_004364659.1 CDS Tresu_0409 NC_015385.1 443061 443693 R hypothetical protein complement(443061..443693) Treponema succinifaciens DSM 2489 10430497 YP_004364660.1 CDS Tresu_0410 NC_015385.1 443774 444220 D COGs: COG0105 nucleoside diphosphate kinase; HAMAP: nucleoside diphosphate kinase; InterPro IPR001564; KEGG: apo:Arcpr_0498 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; PRIAM: nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase; SPTR: nucleoside diphosphate kinase; manually curated; PFAM: nucleoside diphosphate kinase; nucleoside diphosphate kinase 443774..444220 Treponema succinifaciens DSM 2489 10430498 YP_004364661.1 CDS Tresu_0411 NC_015385.1 444401 445456 D COGs: COG0240 glycerol-3-phosphate dehydrogenase; HAMAP: glycerol-3-phosphate dehydrogenase, NAD-dependent; InterPro IPR011128:IPR006109:IPR006168; KEGG: tde:TDE2090 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; PFAM: glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; SPTR: glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; glycerol-3-phosphate dehydrogenase 444401..445456 Treponema succinifaciens DSM 2489 10430499 YP_004364662.1 CDS Tresu_0412 NC_015385.1 445481 446875 D COGs: COG0541 Signal recognition particle GTPase; InterProIPR013822:IPR000897:IPR004125:IPR004780:IPR 003593; KEGG: tde:TDE2089 signal recognition particle protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core; SPTR: Signal recognition particle protein; TIGRFAM: Signal recognition particle, SRP; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein; signal recognition particle protein 445481..446875 Treponema succinifaciens DSM 2489 10430500 YP_004364663.1 CDS Tresu_0413 NC_015385.1 446872 447603 R KEGG: tde:TDE0642 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(446872..447603) Treponema succinifaciens DSM 2489 10430501 YP_004364664.1 CDS Tresu_0414 NC_015385.1 447760 451104 D InterPro IPR019734; KEGG: tde:TDE1092 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 447760..451104 Treponema succinifaciens DSM 2489 10430502 YP_004364665.1 CDS Tresu_0415 NC_015385.1 451107 451757 D COGs: COG0170 Dolichol kinase; InterPro IPR000374; KEGG: tde:TDE2717 phosphatidate cytidylyltransferase, ATPase AAA; PFAM: Phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase, ATPase AAA; PFAM: Cytidylyltransferase family; phosphatidate cytidylyltransferase 451107..451757 Treponema succinifaciens DSM 2489 10430503 YP_004364666.1 CDS Tresu_0416 NC_015385.1 451754 452584 R KEGG: tde:TDE1445 hypothetical protein; SPTR: Putative lipoprotein; hypothetical protein complement(451754..452584) Treponema succinifaciens DSM 2489 10430504 YP_004364667.1 CDS Tresu_0417 NC_015385.1 452738 453439 D COGs: COG5497 secreted protein; InterPro IPR018725; KEGG: ssm:Spirs_0260 protein of unknown function DUF2259, secreted; PFAM: protein of unknown function DUF2259, secreted; SPTR: Putative uncharacterized protein; PFAM: Predicted secreted protein (DUF2259); hypothetical protein 452738..453439 Treponema succinifaciens DSM 2489 10430505 YP_004364668.1 CDS Tresu_0418 NC_015385.1 453563 454795 D COGs: COG0436 aspartate/tyrosine/aromatic aminotransferase; HAMAP: LL-diaminopimelate aminotransferase; InterPro IPR004839:IPR019942; KEGG: vcn:VOLCADRAFT_81843 hypothetical protein; PFAM: Aminotransferase, class I/classII; PRIAM: LL-diaminopimelate aminotransferase; SPTR: Putative uncharacterized protein; TIGRFAM: LL-diaminopimelate aminotransferase, plant-related; PFAM: Aminotransferase class I and II; TIGRFAM: LL-diaminopimelate aminotransferase; LL-diaminopimelate aminotransferase 453563..454795 Treponema succinifaciens DSM 2489 10430506 YP_004364669.1 CDS Tresu_0419 NC_015385.1 454870 455994 D COGs: COG0079 histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; HAMAP: histidinol-phosphate aminotransferase; InterPro IPR004839:IPR005861; KEGG: sat:SYN_01517 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/classII; PRIAM: histidinol-phosphate transaminase; SPTR: histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 454870..455994 Treponema succinifaciens DSM 2489 10430507 YP_004364670.1 CDS Tresu_0420 NC_015385.1 456020 456694 D COGs: COG2129 phosphoesterase related to the Icc protein; InterPro IPR004843; KEGG: tde:TDE2514 serine/threonine protein phosphatase family protein; PFAM: Metallo-dependent phosphatase; SPTR: serine/threonine protein phosphatase family protein; PFAM: Calcineurin-like phosphoesterase; metallophosphoesterase 456020..456694 Treponema succinifaciens DSM 2489 10430508 YP_004364671.1 CDS Tresu_0421 NC_015385.1 456754 458601 D COGs: COG1523 Type II secretory pathway pullulanase PulA and related glycosidase; InterPro IPR004193:IPR006047:IPR006589; KEGG: hor:Hore_13880 pullulanase, type I; PFAM: glycosyl hydrolase, family 13, catalytic domain; glycoside hydrolase, family 13, N-terminal; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Pullulanase, type I; PFAM: alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: pullulanase, type I; alpha amylase catalytic subunit 456754..458601 Treponema succinifaciens DSM 2489 10430509 YP_004364672.1 CDS Tresu_0423 NC_015385.1 460152 460271 D hypothetical protein 460152..460271 Treponema succinifaciens DSM 2489 10430511 YP_004364673.1 CDS Tresu_0424 NC_015385.1 460418 461083 R KEGG: cha:CHAB381_0695 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(460418..461083) Treponema succinifaciens DSM 2489 10430512 YP_004364674.1 CDS Tresu_0425 NC_015385.1 461110 461337 R hypothetical protein complement(461110..461337) Treponema succinifaciens DSM 2489 10430513 YP_004364675.1 CDS Tresu_0426 NC_015385.1 461595 461867 R hypothetical protein complement(461595..461867) Treponema succinifaciens DSM 2489 10430514 YP_004364676.1 CDS Tresu_0427 NC_015385.1 461899 462090 R hypothetical protein complement(461899..462090) Treponema succinifaciens DSM 2489 10430515 YP_004364677.1 CDS Tresu_0428 NC_015385.1 468172 469302 D COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein 468172..469302 Treponema succinifaciens DSM 2489 10430520 YP_004364678.1 CDS Tresu_0429 NC_015385.1 469411 470157 D KEGG: tde:TDE0731 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 469411..470157 Treponema succinifaciens DSM 2489 10430521 YP_004364679.1 CDS Tresu_0430 NC_015385.1 470158 470763 D KEGG: pin:Ping_2264 hypothetical protein; SPTR: Putative lipoprotein; TIGRFAM: uncharacterized proteobacterial lipoprotein; hypothetical protein 470158..470763 Treponema succinifaciens DSM 2489 10430522 YP_004364680.1 CDS Tresu_0431 NC_015385.1 470832 472238 D COGs: COG3014 conserved hypothetical protein; KEGG: cts:Ctha_1249 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 470832..472238 Treponema succinifaciens DSM 2489 10430523 YP_004364681.1 CDS Tresu_0432 NC_015385.1 472226 473260 D KEGG: brm:Bmur_0114 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 472226..473260 Treponema succinifaciens DSM 2489 10430524 YP_004364682.1 CDS Tresu_0433 NC_015385.1 473562 475532 D COGs: COG0326 Molecular chaperone HSP90 family; HAMAP: Chaperone protein HtpG; InterPro IPR003594:IPR020576:IPR001404; KEGG: tde:TDE2480 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; SPTR: Chaperone protein htpG; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein; chaperone protein htpG 473562..475532 Treponema succinifaciens DSM 2489 10430526 YP_004364683.1 CDS Tresu_0434 NC_015385.1 475632 476363 D COGs: COG2357 conserved hypothetical protein; InterPro IPR007685; KEGG: clj:CLJU_c19960 hypothetical protein; PFAM: RelA/SpoT; SMART: RelA/SpoT; SPTR: Conserved protein with RelA/SpoT domain; PFAM: Region found in RelA / SpoT proteins; RelA/SpoT domain-containing protein 475632..476363 Treponema succinifaciens DSM 2489 10430527 YP_004364684.1 CDS Tresu_0435 NC_015385.1 476559 476933 D COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR022687:IPR001367:IPR022689; KEGG: bpb:bpr_I1635 DtxR family transcriptional regulator; PFAM: Iron dependent repressor, N-terminal; Iron dependent repressor; SMART: Iron dependent repressor, diptheria toxin type; SPTR: Transcriptional regulator DtxR family; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain; DtxR family iron (metal) dependent repressor 476559..476933 Treponema succinifaciens DSM 2489 10430528 YP_004364685.1 CDS Tresu_0436 NC_015385.1 476935 478374 D COGs: COG0165 argininosuccinate lyase; HAMAP: argininosuccinate lyase; InterPro IPR022761:IPR009049; KEGG: cbe:Cbei_4516 argininosuccinate lyase; PFAM: Lyase 1, N-terminal; PRIAM: argininosuccinate lyase; SPTR: argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase; argininosuccinate lyase 476935..478374 Treponema succinifaciens DSM 2489 10430529 YP_004364686.1 CDS Tresu_0437 NC_015385.1 478397 479167 D COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: tjr:TherJR_0419 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; SPTR: Extracellular solute-binding protein family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3; ABC transporter substrate-binding protein 478397..479167 Treponema succinifaciens DSM 2489 10430530 YP_004364687.1 CDS Tresu_0438 NC_015385.1 479235 479909 D COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515:IPR010065; KEGG: cce:Ccel_0886 polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; polar amino acid ABC transporter inner membrane subunit 479235..479909 Treponema succinifaciens DSM 2489 10430531 YP_004364688.1 CDS Tresu_0439 NC_015385.1 479893 480651 D COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: cce:Ccel_0887 ABC transporter related; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: ABC transporter; phosphonate-transporting ATPase 479893..480651 Treponema succinifaciens DSM 2489 10430532 YP_004364689.1 CDS Tresu_0440 NC_015385.1 480865 482514 D COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase; InterPro IPR000644:IPR010766:IPR001667:IPR004097; KEGG: gur:Gura_4157 ATPase AAA manganese-dependent inorganic pyrophosphatase; PFAM: Cystathionine beta-synthase, core; DRTGG; phosphoesterase, RecJ-like; DHHA2; PRIAM: Inorganic diphosphatase; SPTR: Inorganic diphosphatase; PFAM: DHH family; DRTGG domain; DHHA2 domain; CBS domain; inorganic diphosphatase 480865..482514 Treponema succinifaciens DSM 2489 10430534 YP_004364690.1 CDS Tresu_0441 NC_015385.1 482521 482874 R KEGG: bpb:bpr_I1819 Hpt domain-containing protein; SPTR: Hpt domain; PFAM: Hpt domain; Hpt domain-containing protein complement(482521..482874) Treponema succinifaciens DSM 2489 10430535 YP_004364691.1 CDS Tresu_0442 NC_015385.1 483163 484125 D COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: ssm:Spirs_0361 ABC transporter; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter; sulfate-transporting ATPase 483163..484125 Treponema succinifaciens DSM 2489 10430536 YP_004364692.1 CDS Tresu_0443 NC_015385.1 484142 484837 D InterPro IPR013525; KEGG: ssm:Spirs_0360 ABC-type transport system, membrane protein; PFAM: ABC transporter; SPTR: ABC-type transport system, membrane protein; ABC transporter 484142..484837 Treponema succinifaciens DSM 2489 10430537 YP_004364693.1 CDS Tresu_0444 NC_015385.1 484841 486907 D COGs: COG3225 ABC transporter involved in gliding motility auxiliary component; InterPro IPR019196; KEGG: ssm:Spirs_0359 ABC transporter PFAM: ABC-type uncharacterised transport system; SPTR: ABC transporter ; PFAM: ABC transporter; ABC transporter 484841..486907 Treponema succinifaciens DSM 2489 10430538 YP_004364694.1 CDS Tresu_0445 NC_015385.1 486925 487467 D KEGG: ssm:Spirs_0358 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 486925..487467 Treponema succinifaciens DSM 2489 10430539 YP_004364695.1 CDS Tresu_0446 NC_015385.1 487475 488242 R COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942:IPR006145:IPR000748; KEGG: thx:Thet_0044 pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase; pseudouridine synthase Rsu complement(487475..488242) Treponema succinifaciens DSM 2489 10430540 YP_004364696.1 CDS Tresu_0447 NC_015385.1 488686 491475 D COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR020046:IPR020047:IPR002562:IPR001098:IPR 018320:IPR002421:IPR008918; KEGG: tde:TDE1637 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase 1; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I; DNA polymerase I 488686..491475 Treponema succinifaciens DSM 2489 10430541 YP_004364697.1 CDS Tresu_0448 NC_015385.1 491475 492071 D COGs: COG0237 Dephospho-CoA kinase; InterPro IPR001977; KEGG: tde:TDE1638 dephospho-CoA kinase, ATPase AAA; PFAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; dephospho-CoA kinase 491475..492071 Treponema succinifaciens DSM 2489 10430542 YP_004364698.1 CDS Tresu_0449 NC_015385.1 492185 493123 D InterPro IPR007730; KEGG: tde:TDE1639 sporulation repeat-containing protein; PFAM: Sporulation-related domain; SPTR: Sporulation related repeat protein; PFAM: Sporulation related domain; sporulation domain-containing protein 492185..493123 Treponema succinifaciens DSM 2489 10430543 YP_004364699.1 CDS Tresu_0450 NC_015385.1 493129 493611 D COGs: COG2606 conserved hypothetical protein; InterPro IPR007214:IPR004369; KEGG: sdl:Sdel_0896 YbaK/EbsC protein; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; SPTR: YbaK/ebsC protein; TIGRFAM: Prolyl-tRNA editing protein, YbaK/EbsC; PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein; ybaK/ebsC protein 493129..493611 Treponema succinifaciens DSM 2489 10430544 YP_004364700.1 CDS Tresu_0451 NC_015385.1 493683 495032 D COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC; InterPro IPR011538:IPR019554:IPR001450:IPR010208; KEGG: tde:TDE0838 Na(+)-translocating NADH-quinone reductase, A subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; 4Fe-4S binding domain; SPTR: Na(+)-translocating NADH-quinone reductase, A subunit; TIGRFAM: Electron transport complex, RnfC; PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; RnfABCDGE type electron transport complex subunit C 493683..495032 Treponema succinifaciens DSM 2489 10430545 YP_004364701.1 CDS Tresu_0452 NC_015385.1 495029 496060 D COGs: COG4658 NADH:ubiquinone oxidoreductase subunit RnfD; InterPro IPR004338:IPR011303; KEGG: tde:TDE0837 Na(+)-translocating NADH-quinone reductase, B subunit; PFAM: NADH-quinone reductase NQR2/RnfD; SPTR: Na(+)-translocating NADH-quinone reductase, B subunit; TIGRFAM: Electron transport complex, RnfD; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; RnfABCDGE type electron transport complex subunit D 495029..496060 Treponema succinifaciens DSM 2489 10430546 YP_004364702.1 CDS Tresu_0453 NC_015385.1 496057 496659 D COGs: COG4659 NADH:ubiquinone oxidoreductase subunit RnfG; InterPro IPR007329; KEGG: tde:TDE0836 Na(+)-translocating NADH-quinone reductase, C subunit; PFAM: FMN-binding; SMART: FMN-binding; SPTR: Electron transport complex, rnfabcdGe type, g subunit; PFAM: FMN-binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; FMN-binding domain-containing protein 496057..496659 Treponema succinifaciens DSM 2489 10430547 YP_004364703.1 CDS Tresu_0454 NC_015385.1 496661 497278 D COGs: COG4660 NADH:ubiquinone oxidoreductase subunit RnfE; InterPro IPR003667:IPR010968; KEGG: tde:TDE0835 electron transport complex RsxE subunit; PFAM: Electron transport complex, Rnf/Nqr; SPTR: Na(+)-translocating NADH-quinone reductase, D subunit; TIGRFAM: Electron transport complex, RnfE; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; RnfABCDGE type electron transport complex subunit E 496661..497278 Treponema succinifaciens DSM 2489 10430548 YP_004364704.1 CDS Tresu_0455 NC_015385.1 497275 497853 D COGs: COG4657 NADH:ubiquinone oxidoreductase subunit RnfA; InterPro IPR003667; KEGG: tde:TDE0834 Na(+)-translocating NADH-quinone reductase, E subunit; PFAM: Electron transport complex, Rnf/Nqr; SPTR: Na(+)-translocating NADH-quinone reductase subunit e (Na(+)-translocating nqr subunit e); PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; RnfA-Nqr electron transport subunit 497275..497853 Treponema succinifaciens DSM 2489 10430549 YP_004364705.1 CDS Tresu_0456 NC_015385.1 497871 498692 D COGs: COG2878 NADH:ubiquinone oxidoreductase subunit RnfB; InterPro IPR007202:IPR001450; KEGG: tde:TDE1894 ferredoxin; PFAM: Putative Fe-S cluster; 4Fe-4S binding domain; SPTR: Iron-sulfur cluster-binding protein; PFAM: Putative Fe-S cluster; 4Fe-4S binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; Fe-S cluster domain-containing protein 497871..498692 Treponema succinifaciens DSM 2489 10430550 YP_004364706.1 CDS Tresu_0457 NC_015385.1 498720 498884 D hypothetical protein 498720..498884 Treponema succinifaciens DSM 2489 10430551 YP_004364707.1 CDS Tresu_0458 NC_015385.1 498881 500374 D COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461; KEGG: fsu:Fisuc_0428 Na+/H+ antiporter NhaC-like protein; PFAM: Na+/H+ antiporter NhaC-like; SPTR: Na+/H+ antiporter NhaC-like protein; PFAM: Na+/H+ antiporter family; Na+/H+ antiporter NhaC 498881..500374 Treponema succinifaciens DSM 2489 10430552 YP_004364708.1 CDS Tresu_0459 NC_015385.1 500542 501837 D COGs: COG2233 xanthine/uracil permease; InterPro IPR006043:IPR006042; KEGG: ccu:Ccur_06450 uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; SPTR: Uracil-xanthine permease; TIGRFAM: xanthine/uracil permease; PFAM: Permease family; TIGRFAM: uracil-xanthine permease; uracil-xanthine permease 500542..501837 Treponema succinifaciens DSM 2489 10430553 YP_004364709.1 CDS Tresu_0460 NC_015385.1 501842 502477 D COGs: COG0035 Uracil phosphoribosyltransferase; InterPro IPR000836:IPR005765; KEGG: csh:Closa_1878 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 501842..502477 Treponema succinifaciens DSM 2489 10430554 YP_004364710.1 CDS Tresu_0461 NC_015385.1 502568 504385 D COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR018164:IPR012947:IPR002318; KEGG: ssm:Spirs_3146 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; SMART: Threonyl/alanyl tRNA synthetase, SAD; SPTR: Alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase; alanyl-tRNA synthetase 502568..504385 Treponema succinifaciens DSM 2489 10430555 YP_004364711.1 CDS Tresu_0462 NC_015385.1 504447 505526 D KEGG: tpp:TPASS_1016 basic membrane protein; SPTR: Basic membrane protein; PFAM: SurA N-terminal domain; basic membrane protein 504447..505526 Treponema succinifaciens DSM 2489 10430556 YP_004364712.1 CDS Tresu_0463 NC_015385.1 505536 506021 D COGs: COG0781 Transcription termination factor; HAMAP: NusB antitermination factor; InterPro IPR006027:IPR011605; KEGG: tde:TDE1657 transcription antitermination protein NusB; PFAM: NusB/RsmB/TIM44; SPTR: N utilization substance protein B homolog; TIGRFAM: NusB antitermination factor; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB; NusB antitermination factor 505536..506021 Treponema succinifaciens DSM 2489 10430557 YP_004364713.1 CDS Tresu_0464 NC_015385.1 506018 507880 D InterPro IPR019734; KEGG: tde:TDE1656 ATPase AAA lipoprotein; SPTR: Putative lipoprotein; hypothetical protein 506018..507880 Treponema succinifaciens DSM 2489 10430558 YP_004364714.1 CDS Tresu_0465 NC_015385.1 508015 508287 D COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: Chaperonin Cpn10; InterPro IPR020818; KEGG: tde:TDE0934 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit; 10 kDa chaperonin 508015..508287 Treponema succinifaciens DSM 2489 10430559 YP_004364715.1 CDS Tresu_0466 NC_015385.1 508539 509390 D COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR009042:IPR007627:IPR007624:IPR007630:IPR 014284; KEGG: sta:STHERM_c04560 RNA polymerase sigma-70 factor family protein; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RpoD subfamily RNA polymerase sigma-70 subunit 508539..509390 Treponema succinifaciens DSM 2489 10430560 YP_004364716.1 CDS Tresu_0467 NC_015385.1 509371 511557 R COGs: COG1200 RecG-like helicase; InterPro IPR011545:IPR001650:IPR004609:IPR014001; KEGG: tde:TDE2579 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: ATP-dependent DNA helicase RecG; TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG; ATP-dependent DNA helicase RecG complement(509371..511557) Treponema succinifaciens DSM 2489 10430561 YP_004364717.1 CDS Tresu_0468 NC_015385.1 511558 512139 R InterPro IPR003425; KEGG: ssm:Spirs_1326 protein of unknown function YGGT; PFAM: Uncharacterised protein family Ycf19; SPTR: Putative uncharacterized protein; PFAM: YGGT family; hypothetical protein complement(511558..512139) Treponema succinifaciens DSM 2489 10430562 YP_004364718.1 CDS Tresu_0469 NC_015385.1 512161 515802 R COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004013:IPR011708:IPR004365:IPR004805:IPR 003141; KEGG: tde:TDE2786 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III subunit alpha; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc); DNA polymerase III subunit alpha complement(512161..515802) Treponema succinifaciens DSM 2489 10430563 YP_004364719.1 CDS Tresu_0471 NC_015385.1 516243 518348 R COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: tde:TDE2549 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: methyl-accepting chemotaxis protein; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer complement(516243..518348) Treponema succinifaciens DSM 2489 10430565 YP_004364720.1 CDS Tresu_0472 NC_015385.1 518419 519120 R InterPro IPR001584; KEGG: cph:Cpha266_1645 integrase catalytic subunit; PFAM: Integrase, catalytic core; SPTR: Integrase, catalytic region; PFAM: Integrase core domain; integrase catalytic subunit complement(518419..519120) Treponema succinifaciens DSM 2489 10430566 YP_004364721.1 CDS Tresu_0473 NC_015385.1 519177 519725 D hypothetical protein 519177..519725 Treponema succinifaciens DSM 2489 10430567 YP_004364722.1 CDS Tresu_0475 NC_015385.1 520182 521345 D COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: tde:TDE2269 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: Putative uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme; sulfatase-modifying factor protein 520182..521345 Treponema succinifaciens DSM 2489 10430569 YP_004364723.1 CDS Tresu_0476 NC_015385.1 521375 523321 D InterPro IPR001119; KEGG: dau:Daud_1714 S-layer domain-containing protein; PFAM: S-layer homology domain; SPTR: S-layer domain protein; PFAM: S-layer homology domain; S-layer domain-containing protein 521375..523321 Treponema succinifaciens DSM 2489 10430570 YP_004364724.1 CDS Tresu_0477 NC_015385.1 523539 525245 D COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di aminopimelateligase; InterPro IPR000713:IPR013221:IPR004101:IPR005761; KEGG: tde:TDE0825 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase, ATPase AAA; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase; SPTR: UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelateligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 523539..525245 Treponema succinifaciens DSM 2489 10430571 YP_004364725.1 CDS Tresu_0478 NC_015385.1 525242 526372 D COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; HAMAP: D-alanine--D-alanine ligase; InterPro IPR011127:IPR011095:IPR005905; KEGG: tde:TDE2385 D-alanyl-alanine synthetase A; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase N-terminus; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 525242..526372 Treponema succinifaciens DSM 2489 10430572 YP_004364726.1 CDS Tresu_0479 NC_015385.1 526396 527991 D COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR013221:IPR004101:IPR005762; KEGG: tde:TDE0370 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 526396..527991 Treponema succinifaciens DSM 2489 10430573 YP_004364727.1 CDS Tresu_0480 NC_015385.1 528492 528872 D KEGG: ddc:Dd586_2170 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 528492..528872 Treponema succinifaciens DSM 2489 10430574 YP_004364728.1 CDS Tresu_0481 NC_015385.1 528893 529606 D hypothetical protein 528893..529606 Treponema succinifaciens DSM 2489 10430575 YP_004364729.1 CDS Tresu_0482 NC_015385.1 529843 530688 R COGs: COG0152 phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; HAMAP: SAICAR synthetase; InterPro IPR001636; KEGG: eel:EUBELI_00451 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: SAICAR synthetase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(529843..530688) Treponema succinifaciens DSM 2489 10430576 YP_004364730.1 CDS Tresu_0483 NC_015385.1 530752 531396 R COGs: COG2116 formate/nitrite family of transporter; InterPro IPR000292; KEGG: fsu:Fisuc_2932 formate/nitrite transporter; PFAM: formate/nitrite transporter; SPTR: Putative membrane protein; manually curated; PFAM: formate/nitrite transporter; formate/nitrite transporter complement(530752..531396) Treponema succinifaciens DSM 2489 10430577 YP_004364731.1 CDS Tresu_0484 NC_015385.1 531583 533601 D COGs: COG1640 4-alpha-glucanotransferase; InterPro IPR003385; KEGG: fsu:Fisuc_0860 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; PRIAM: 4-alpha-glucanotransferase; SPTR: 4-alpha-glucanotransferase; PFAM: 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; 4-alpha-glucanotransferase 531583..533601 Treponema succinifaciens DSM 2489 10430578 YP_004364732.1 CDS Tresu_0485 NC_015385.1 533629 537273 D InterPro IPR006047:IPR006589; KEGG: tde:TDE2678 alpha-amylase family protein; PFAM: glycosyl hydrolase, family 13, catalytic domain; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: alpha-amylase family protein; PFAM: alpha amylase, catalytic domain; alpha amylase catalytic subunit 533629..537273 Treponema succinifaciens DSM 2489 10430579 YP_004364733.1 CDS Tresu_0486 NC_015385.1 537239 538558 R COGs: COG0498 threonine synthase; InterPro IPR001926; KEGG: tde:TDE2676 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: threonine synthase; SPTR: threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase; threonine synthase complement(537239..538558) Treponema succinifaciens DSM 2489 10430580 YP_004364734.1 CDS Tresu_0487 NC_015385.1 538646 538864 R hypothetical protein complement(538646..538864) Treponema succinifaciens DSM 2489 10430581 YP_004364735.1 CDS Tresu_0488 NC_015385.1 538932 539579 D COGs: COG0118 glutamine amidotransferase; HAMAP: Imidazole glycerol phosphate synthase, subunit H; InterPro IPR000991:IPR010139; KEGG: bpf:BpOF4_05370 imidazole glycerol phosphate synthase subunit HisH; PFAM: glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase subunit hisH; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; imidazole glycerol phosphate synthase subunit hisH 538932..539579 Treponema succinifaciens DSM 2489 10430582 YP_004364736.1 CDS Tresu_0489 NC_015385.1 539581 540348 D COGs: COG0107 Imidazoleglycerol-phosphate synthase; HAMAP: histidine biosynthesis, HisF; InterPro IPR006062:IPR004651; KEGG: sta:STHERM_c15890 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: histidine biosynthesis, HisF; PFAM: histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; imidazole glycerol phosphate synthase subunit hisF 539581..540348 Treponema succinifaciens DSM 2489 10430583 YP_004364737.1 CDS Tresu_0490 NC_015385.1 540357 542156 R COGs: COG0469 Pyruvate kinase; InterPro IPR015793:IPR015795:IPR001697; KEGG: ssm:Spirs_0059 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; pyruvate kinase complement(540357..542156) Treponema succinifaciens DSM 2489 10430584 YP_004364738.1 CDS Tresu_0491 NC_015385.1 542176 542562 R COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: sta:STHERM_c17560 ATPase AAA 6-pyruvoyl tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: Putative 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein; queuosine biosynthesis protein QueD complement(542176..542562) Treponema succinifaciens DSM 2489 10430585 YP_004364739.1 CDS Tresu_0493 NC_015385.1 543351 543806 D hypothetical protein 543351..543806 Treponema succinifaciens DSM 2489 10430587 YP_004364740.1 CDS Tresu_0494 NC_015385.1 543855 544799 R COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; InterPro IPR000534:IPR010136; KEGG: cce:Ccel_2910 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SMART: Semialdehyde dehydrogenase, NAD-binding; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 2; PFAM: Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form; N-acetyl-gamma-glutamyl-phosphate reductase complement(543855..544799) Treponema succinifaciens DSM 2489 10430588 YP_004364741.1 CDS Tresu_0495 NC_015385.1 544906 545316 D KEGG: tde:TDE2147 ATPase AAA lipoprotein; SPTR: lipoprotein, ATPase AAA; lipoprotein 544906..545316 Treponema succinifaciens DSM 2489 10430589 YP_004364742.1 CDS Tresu_0496 NC_015385.1 545313 546599 R KEGG: tde:TDE0194 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: von Willebrand factor type A domain; hypothetical protein complement(545313..546599) Treponema succinifaciens DSM 2489 10430590 YP_004364743.1 CDS Tresu_0497 NC_015385.1 546819 547916 D KEGG: tde:TDE1725 hypothetical protein; SPTR: Conserved domain protein; hypothetical protein 546819..547916 Treponema succinifaciens DSM 2489 10430591 YP_004364744.1 CDS Tresu_0498 NC_015385.1 547945 548532 D InterPro IPR001387:IPR013096; KEGG: ckr:CKR_1206 hypothetical protein; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; PFAM: Cupin domain; Helix-turn-helix; hypothetical protein 547945..548532 Treponema succinifaciens DSM 2489 10430592 YP_004364745.1 CDS Tresu_0499 NC_015385.1 549006 553580 D COGs: COG3581 conserved hypothetical protein; InterPro IPR002731:IPR018709:IPR008275; KEGG: tde:TDE1695 CoA-substrate-specific enzyme activase domain-containing protein; PFAM: protein of unknown function DUF2229, CoA enzyme activase; ATPase, BadF/BadG/BcrA/BcrD type; SPTR: CoA-substrate-specific enzyme activase domain protein; TIGRFAM: CoA enzyme activase; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; BadF/BadG/BcrA/BcrD ATPase family; CoA enzyme activase uncharacterised domain (DUF2229); TIGRFAM: CoA-substrate-specific enzyme activase, ATPase AAA; CoA-substrate-specific enzyme activase 549006..553580 Treponema succinifaciens DSM 2489 10430593 YP_004364746.1 CDS Tresu_0500 NC_015385.1 553620 555005 D KEGG: tde:TDE1533 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 553620..555005 Treponema succinifaciens DSM 2489 10430594 YP_004364747.1 CDS Tresu_0501 NC_015385.1 554992 557877 D InterPro IPR019734; KEGG: ssm:Spirs_3206 TPR repeat-containing protein; SPTR: TPR repeat-containing protein; hypothetical protein 554992..557877 Treponema succinifaciens DSM 2489 10430595 YP_004364748.1 CDS Tresu_0502 NC_015385.1 557896 559533 D KEGG: ssm:Spirs_3205 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 557896..559533 Treponema succinifaciens DSM 2489 10430596 YP_004364749.1 CDS Tresu_0503 NC_015385.1 559572 560186 D COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: ssm:Spirs_3204 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family; MotA/TolQ/ExbB proton channel 559572..560186 Treponema succinifaciens DSM 2489 10430597 YP_004364750.1 CDS Tresu_0504 NC_015385.1 560188 560598 D COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: ssm:Spirs_3203 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 560188..560598 Treponema succinifaciens DSM 2489 10430598 YP_004364751.1 CDS Tresu_0505 NC_015385.1 560595 561596 D KEGG: tva:TVAG_254160 dentin sialophosphoprotein precursor; SPTR: Dentin sialophosphoprotein, ATPase AAA; hypothetical protein 560595..561596 Treponema succinifaciens DSM 2489 10430599 YP_004364752.1 CDS Tresu_0506 NC_015385.1 561620 562291 D COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834; KEGG: tde:TDE2294 HAD superfamily hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: phosphoglycolate phosphatase; PFAM: haloacid dehalogenase-like hydrolase; haloacid dehalogenase domain-containing protein hydrolase 561620..562291 Treponema succinifaciens DSM 2489 10430600 YP_004364753.1 CDS Tresu_0507 NC_015385.1 562333 567768 D KEGG: sta:STHERM_c18710 ATPase AAA cytoskeletal protein; SPTR: Putative cytoskeletal protein; PFAM: Apolipoprotein A1/A4/E domain; hypothetical protein 562333..567768 Treponema succinifaciens DSM 2489 10430601 YP_004364754.1 CDS Tresu_0508 NC_015385.1 568385 568636 D hypothetical protein 568385..568636 Treponema succinifaciens DSM 2489 10430602 YP_004364755.1 CDS Tresu_0509 NC_015385.1 568633 570144 D hypothetical protein 568633..570144 Treponema succinifaciens DSM 2489 10430603 YP_004364756.1 CDS Tresu_0510 NC_015385.1 570174 570611 D hypothetical protein 570174..570611 Treponema succinifaciens DSM 2489 10430604 YP_004364757.1 CDS Tresu_0511 NC_015385.1 570919 571389 R COGs: COG5628 acetyltransferase; InterPro IPR000182; KEGG: ccb:Clocel_0267 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Putative uncharacterized protein; GCN5-related N-acetyltransferase complement(570919..571389) Treponema succinifaciens DSM 2489 10430605 YP_004364758.1 CDS Tresu_0513 NC_015385.1 571830 573374 D COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356:IPR004546; KEGG: cst:CLOST_1970 type I restriction modification system protein hsdmi; PFAM: DNA methylase, adenine-specific; SPTR: Putative uncharacterized protein; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; PFAM: N-6 DNA methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM); type I restriction-modification system, M subunit 571830..573374 Treponema succinifaciens DSM 2489 10430607 YP_004364759.1 CDS Tresu_0514 NC_015385.1 573484 574749 D KEGG: bfs:BF1100 ATPase AAA ATP-binding protein; SPTR: Putative ATP-binding protein; ATPase 573484..574749 Treponema succinifaciens DSM 2489 10430608 YP_004364760.1 CDS Tresu_0515 NC_015385.1 574730 575356 D KEGG: cju:C8J_1450 RloB; SPTR: Putative uncharacterized protein; hypothetical protein 574730..575356 Treponema succinifaciens DSM 2489 10430609 YP_004364761.1 CDS Tresu_0516 NC_015385.1 575388 576722 D COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: lil:LA_3198 type I restriction enzyme EcoprrI specificity protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain protein; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein 575388..576722 Treponema succinifaciens DSM 2489 10430610 YP_004364762.1 CDS Tresu_0517 NC_015385.1 576760 577347 D COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: mct:MCR_1831 type I restriction modification DNA specificity protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Putative uncharacterized protein; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein 576760..577347 Treponema succinifaciens DSM 2489 10430611 YP_004364763.1 CDS Tresu_0518 NC_015385.1 577535 578668 D KEGG: pay:PAU_03969 anticodon nuclease prrc; SPTR: Putative uncharacterized protein; anticodon nuclease prrc 577535..578668 Treponema succinifaciens DSM 2489 10430612 YP_004364764.1 CDS Tresu_0519 NC_015385.1 578665 581760 D COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409:IPR006935:IPR004473:IPR014001; KEGG: cst:CLOST_1968 type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Putative Type I site-specific deoxyribonuclease; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; Type I restriction and modification enzyme - subunit R C terminal; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; HsdR family type I site-specific deoxyribonuclease 578665..581760 Treponema succinifaciens DSM 2489 10430613 YP_004364765.1 CDS Tresu_0521 NC_015385.1 582492 582929 R COGs: COG3871 Uncharacterized stress protein (general stress protein 26); InterPro IPR011576; KEGG: cpy:Cphy_2560 pyridoxamine 5'-phosphate oxidase-related FMN-binding; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: Pyridoxamine 5'-phosphate oxidase-related FMN-binding; PFAM: Pyridoxamine 5'-phosphate oxidase; pyridoxamine 5'-phosphate oxidase-related FMN-binding protein complement(582492..582929) Treponema succinifaciens DSM 2489 10430615 YP_004364766.1 CDS Tresu_0522 NC_015385.1 583150 583587 R KEGG: tde:TDE2416 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(583150..583587) Treponema succinifaciens DSM 2489 10430616 YP_004364767.1 CDS Tresu_0523 NC_015385.1 583602 584162 R InterPro IPR000623; KEGG: clj:CLJU_c38140 hypothetical protein; PFAM: shikimate kinase; SPTR: shikimate kinase; PFAM: shikimate kinase; shikimate kinase complement(583602..584162) Treponema succinifaciens DSM 2489 10430617 YP_004364768.1 CDS Tresu_0524 NC_015385.1 584166 585302 R COGs: COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; InterPro IPR005661; KEGG: cth:Cthe_0509 sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; PRIAM: glutaconyl-CoA decarboxylase; SPTR: Sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; PFAM: subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta complement(584166..585302) Treponema succinifaciens DSM 2489 10430618 YP_004364769.1 CDS Tresu_0525 NC_015385.1 585527 587413 R COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: tde:TDE0850 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; SPTR: methyl-accepting chemotaxis protein; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer complement(585527..587413) Treponema succinifaciens DSM 2489 10430619 YP_004364770.1 CDS Tresu_0527 NC_015385.1 588250 588477 D hypothetical protein 588250..588477 Treponema succinifaciens DSM 2489 10430621 YP_004364771.1 CDS Tresu_0528 NC_015385.1 588766 589017 D KEGG: tde:TDE1846 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 588766..589017 Treponema succinifaciens DSM 2489 10430622 YP_004364772.1 CDS Tresu_0529 NC_015385.1 589020 589397 D KEGG: tde:TDE1845 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 589020..589397 Treponema succinifaciens DSM 2489 10430623 YP_004364773.1 CDS Tresu_0530 NC_015385.1 589394 590713 D COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: nla:NLA_15070 C-5 cytosine-specific DNA-methylase; PFAM: C-5 cytosine methyltransferase; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: C-5 cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA-cytosine methyltransferase 589394..590713 Treponema succinifaciens DSM 2489 10430624 YP_004364774.1 CDS Tresu_0531 NC_015385.1 590706 592262 D InterPro IPR011704; KEGG: cco:CCC13826_0822 polysulfide reductase chain C (sulfur reductase chain C); PFAM: ATPase, AAA-5; SPTR: R1.LlaJI; PFAM: AAA domain (dynein-related subfamily); ATPase 590706..592262 Treponema succinifaciens DSM 2489 10430625 YP_004364775.1 CDS Tresu_0532 NC_015385.1 592483 593868 D InterPro IPR018579; KEGG: eel:EUBELI_01791 hypothetical protein; PFAM: Restriction endonuclease, type II, LlaJI; SPTR: Putative uncharacterized protein; PFAM: LlaJI restriction endonuclease; restriction endonuclease, type II, LlaJI 592483..593868 Treponema succinifaciens DSM 2489 10430626 YP_004364776.1 CDS Tresu_0533 NC_015385.1 594183 595397 D hypothetical protein 594183..595397 Treponema succinifaciens DSM 2489 10430627 YP_004364777.1 CDS Tresu_0534 NC_015385.1 595404 595778 R hypothetical protein complement(595404..595778) Treponema succinifaciens DSM 2489 10430628 YP_004364778.1 CDS Tresu_0536 NC_015385.1 596236 598533 D COGs: COG1048 Aconitase A; InterPro IPR001030:IPR000573; KEGG: ere:EUBREC_0024 hypothetical protein; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; PRIAM: 3-isopropylmalate dehydratase; SPTR: Putative uncharacterized protein; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); 3-isopropylmalate dehydratase 596236..598533 Treponema succinifaciens DSM 2489 10430630 YP_004364779.1 CDS Tresu_0537 NC_015385.1 598606 599106 D KEGG: ssm:Spirs_2822 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 598606..599106 Treponema succinifaciens DSM 2489 10430631 YP_004364780.1 CDS Tresu_0538 NC_015385.1 599238 599993 D KEGG: ssm:Spirs_0399 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 599238..599993 Treponema succinifaciens DSM 2489 10430632 YP_004364781.1 CDS Tresu_0539 NC_015385.1 600089 600304 D hypothetical protein 600089..600304 Treponema succinifaciens DSM 2489 10430633 YP_004364782.1 CDS Tresu_0540 NC_015385.1 600600 601937 D COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: nmi:NMO_0571 ATPase AAA type II DNA modification methylase; PFAM: C-5 cytosine methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: C-5 cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 600600..601937 Treponema succinifaciens DSM 2489 10430634 YP_004364783.1 CDS Tresu_0541 NC_015385.1 601930 602832 R KEGG: nmi:NMO_0572 ATPase AAA type II restriction endonuclease; SPTR: Putative type II restriction endonuclease; PFAM: ICEA protein; type II restriction endonuclease complement(601930..602832) Treponema succinifaciens DSM 2489 10430635 YP_004364784.1 CDS Tresu_0542 NC_015385.1 602844 603059 R InterPro IPR001387; KEGG: mar:MAE_14980 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator; PFAM: Helix-turn-helix; hypothetical protein complement(602844..603059) Treponema succinifaciens DSM 2489 10430636 YP_004364785.1 CDS Tresu_0544 NC_015385.1 603405 604616 D COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594; KEGG: dba:Dbac_2294 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SPTR: histidine kinase; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; histidine kinase 603405..604616 Treponema succinifaciens DSM 2489 10430638 YP_004364786.1 CDS Tresu_0545 NC_015385.1 604620 605225 D COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: svi:Svir_33010 response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SPTR: DNA-binding response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator 604620..605225 Treponema succinifaciens DSM 2489 10430639 YP_004364787.1 CDS Tresu_0546 NC_015385.1 605338 606588 R COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bpb:bpr_III123 archaeal ATPase family protein; SPTR: Predicted ATPase (AAA+ superfamily); ATPase family protein complement(605338..606588) Treponema succinifaciens DSM 2489 10430640 YP_004364788.1 CDS Tresu_0547 NC_015385.1 606781 607128 R InterPro IPR001387; KEGG: tde:TDE1170 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; PFAM: Bacteriophage CI repressor helix-turn-helix domain; hypothetical protein complement(606781..607128) Treponema succinifaciens DSM 2489 10430641 YP_004364789.1 CDS Tresu_0548 NC_015385.1 607264 607692 D hypothetical protein 607264..607692 Treponema succinifaciens DSM 2489 10430642 YP_004364790.1 CDS Tresu_0549 NC_015385.1 607694 608086 D COGs: COG0615 Cytidylyltransferase; InterPro IPR004820:IPR004821:IPR006409; KEGG: fsu:Fisuc_0969 glycerol-3-phosphate cytidylyltransferase; PFAM: Cytidylyltransferase; PRIAM: glycerol-3-phosphate cytidylyltransferase; SPTR: Putative uncharacterized protein; TIGRFAM: glycerol-3-phosphate cytidylyltransferase; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: glycerol-3-phosphate cytidylyltransferase; cytidyltransferase-related domain; glycerol-3-phosphate cytidylyltransferase 607694..608086 Treponema succinifaciens DSM 2489 10430643 YP_004364791.1 CDS Tresu_0550 NC_015385.1 608086 608934 D COGs: COG3475 LPS biosynthesis protein; InterPro IPR007074; KEGG: lbu:LBUL_1801 LPS biosynthesis protein; PFAM: LicD-like; SPTR: Putative uncharacterized protein; PFAM: LICD protein Family; LicD family protein 608086..608934 Treponema succinifaciens DSM 2489 10430644 YP_004364792.1 CDS Tresu_0551 NC_015385.1 608952 610433 D COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: snp:SPAP_1297 O-antigen and teichoic acid exporter membrane protein; PFAM: polysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; PFAM: polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 608952..610433 Treponema succinifaciens DSM 2489 10430645 YP_004364793.1 CDS Tresu_0552 NC_015385.1 610426 611679 D COGs: COG1887 Putative glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; InterPro IPR007554; KEGG: gtn:GTNG_3260 ATPase AAA glycerophosphotransferase; PFAM: CDP-glycerol glycerophosphotransferase; SPTR: Putative glycerol phosphotransferase; PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP- glycerol:poly(glycerophosphate)glycerophosphotransferase 610426..611679 Treponema succinifaciens DSM 2489 10430646 YP_004364794.1 CDS Tresu_0553 NC_015385.1 611676 611768 D hypothetical protein 611676..611768 Treponema succinifaciens DSM 2489 10430647 YP_004364795.1 CDS Tresu_0554 NC_015385.1 612002 613291 D COGs: COG1373 ATPase (AAA+ superfamily); KEGG: clo:HMPREF0868_0519 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 612002..613291 Treponema succinifaciens DSM 2489 10430648 YP_004364796.1 CDS Tresu_0555 NC_015385.1 613536 614750 D KEGG: ppn:Palpr_1291 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 613536..614750 Treponema succinifaciens DSM 2489 10430649 YP_004364797.1 CDS Tresu_0556 NC_015385.1 614743 615663 D InterPro IPR001173; KEGG: eci:UTI89_C2306 ATPase AAA rhamnosyltransferase; PFAM: glycosyl transferase, family 2; SPTR: Putative rhamnosyltransferase; PFAM: glycosyl transferase family 2; family 2 glycosyl transferase 614743..615663 Treponema succinifaciens DSM 2489 10430650 YP_004364798.1 CDS Tresu_0557 NC_015385.1 615660 616463 D COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sbl:Sbal_2881 glycosyl transferase family protein; PFAM: glycosyl transferase, family 2; SPTR: beta-1,3-N-acetylglucosaminyltransferase; PFAM: glycosyl transferase family 2; family 2 glycosyl transferase 615660..616463 Treponema succinifaciens DSM 2489 10430651 YP_004364799.1 CDS Tresu_0560 NC_015385.1 618524 619048 D hypothetical protein 618524..619048 Treponema succinifaciens DSM 2489 10430654 YP_004364800.1 CDS Tresu_0561 NC_015385.1 619224 620471 D InterPro IPR004919; KEGG: smb:smi_0898 hypothetical protein; PFAM: Domain of unknown function DUF262; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function DUF262; hypothetical protein 619224..620471 Treponema succinifaciens DSM 2489 10430655 YP_004364801.1 CDS Tresu_0562 NC_015385.1 620478 621233 D KEGG: smb:smi_0900 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 620478..621233 Treponema succinifaciens DSM 2489 10430656 YP_004364802.1 CDS Tresu_0563 NC_015385.1 621459 622657 R InterPro IPR002514; KEGG: lby:Lbys_0266 transposase IS3/is911 family protein; PFAM: Transposase IS3/IS911family; SPTR: PUTATIVE TRANSPOSASE; manually curated; PFAM: Transposase; Integrase core domain; transposase IS3/IS911 family protein complement(join(621459..622382,622382..622657)) Treponema succinifaciens DSM 2489 10430657 YP_004364803.1 CDS Tresu_0564 NC_015385.1 622743 623189 D KEGG: tde:TDE1822 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 622743..623189 Treponema succinifaciens DSM 2489 10430658 YP_004364804.1 CDS Tresu_0565 NC_015385.1 623293 624192 D hypothetical protein 623293..624192 Treponema succinifaciens DSM 2489 10430659 YP_004364805.1 CDS Tresu_0566 NC_015385.1 624146 624316 D hypothetical protein 624146..624316 Treponema succinifaciens DSM 2489 10430660 YP_004364806.1 CDS Tresu_0567 NC_015385.1 624504 625775 D KEGG: pru:PRU_1731 hypothetical protein; SPTR: Putative RloA; hypothetical protein 624504..625775 Treponema succinifaciens DSM 2489 10430661 YP_004364807.1 CDS Tresu_0568 NC_015385.1 625777 626334 D KEGG: bvu:BVU_0723 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 625777..626334 Treponema succinifaciens DSM 2489 10430662 YP_004364808.1 CDS Tresu_0570 NC_015385.1 627174 630221 R COGs: COG4951 conserved hypothetical protein; InterPro IPR002755:IPR006935:IPR014001; KEGG: ckr:CKR_2267 hypothetical protein; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; DNA primase, small subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Putative uncharacterized protein; PFAM: Type III restriction enzyme, res subunit; type III restriction protein res subunit complement(627174..630221) Treponema succinifaciens DSM 2489 10430664 YP_004364809.1 CDS Tresu_0571 NC_015385.1 630745 631029 D KEGG: glo:Glov_2220 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 630745..631029 Treponema succinifaciens DSM 2489 10430665 YP_004364810.1 CDS Tresu_0572 NC_015385.1 631072 632016 R hypothetical protein complement(631072..632016) Treponema succinifaciens DSM 2489 10430666 YP_004364811.1 CDS Tresu_0573 NC_015385.1 632043 632690 R hypothetical protein complement(632043..632690) Treponema succinifaciens DSM 2489 10430667 YP_004364812.1 CDS Tresu_0574 NC_015385.1 632840 633115 D InterPro IPR001387; KEGG: tde:TDE0440 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; PFAM: Helix-turn-helix; hypothetical protein 632840..633115 Treponema succinifaciens DSM 2489 10430668 YP_004364813.1 CDS Tresu_0575 NC_015385.1 633122 634390 R COGs: COG1373 ATPase (AAA+ superfamily); KEGG: pru:PRU_0323 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(633122..634390) Treponema succinifaciens DSM 2489 10430669 YP_004364814.1 CDS Tresu_0576 NC_015385.1 634565 635005 R InterPro IPR000182; KEGG: ssb:SSUBM407_1359 acetyltransferase (GNAT) family protein; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Acetyltransferase (GNAT) family protein; GCN5-related N-acetyltransferase complement(634565..635005) Treponema succinifaciens DSM 2489 10430670 YP_004364815.1 CDS Tresu_0577 NC_015385.1 635106 635981 D COGs: COG1533 DNA repair photolyase; InterPro IPR007197; KEGG: cpy:Cphy_0183 radical SAM domain-containing protein; PFAM: Radical SAM; SPTR: DNA repair photolyase; Radical SAM domain protein 635106..635981 Treponema succinifaciens DSM 2489 10430671 YP_004364816.1 CDS Tresu_0578 NC_015385.1 636086 636463 D COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; HAMAP: Camphor resistance CrcB protein; InterPro IPR003691; KEGG: lba:Lebu_0217 CrcB protein; PFAM: Camphor resistance CrcB protein; SPTR: protein CrcB homolog; TIGRFAM: Camphor resistance CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein; CrcB-like protein 636086..636463 Treponema succinifaciens DSM 2489 10430672 YP_004364817.1 CDS Tresu_0579 NC_015385.1 636838 637416 D COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR006668:IPR000644; KEGG: bpb:bpr_I0137 magnesium transporter MgtE; PFAM: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core; SMART: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core; SPTR: Mg2+ transporter (MgtE); PFAM: MgtE intracellular N domain; CBS domain; MgtE integral membrane protein 636838..637416 Treponema succinifaciens DSM 2489 10430673 YP_004364818.1 CDS Tresu_0580 NC_015385.1 637543 637767 D KEGG: bvu:BVU_3764 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 637543..637767 Treponema succinifaciens DSM 2489 10430674 YP_004364819.1 CDS Tresu_0581 NC_015385.1 637814 638032 D KEGG: pmz:HMPREF0659_A6232 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 637814..638032 Treponema succinifaciens DSM 2489 10430675 YP_004364820.1 CDS Tresu_0582 NC_015385.1 638029 638241 D KEGG: dly:Dehly_1177 XRE family transcriptional regulator; SPTR: Putative uncharacterized protein; XRE family transcriptional regulator 638029..638241 Treponema succinifaciens DSM 2489 10430676 YP_004364821.1 CDS Tresu_0583 NC_015385.1 638245 640797 D COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409:IPR006935:IPR013670:IPR014001; KEGG: sku:Sulku_0774 type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, EcoEI, R subunit/Type III, Res subunit, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific restriction-modification system, R (Restriction) subunit and related helicases; PFAM: Type III restriction enzyme, res subunit; EcoEI R protein C-terminal; Type I site-specific deoxyribonuclease 638245..640797 Treponema succinifaciens DSM 2489 10430677 YP_004364822.1 CDS Tresu_0584 NC_015385.1 640798 641601 D InterPro IPR000055; KEGG: eok:G2583_5148 ATPase AAA type I restriction-modification system, S subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Putative type I restriction-modification system, S subunit; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein 640798..641601 Treponema succinifaciens DSM 2489 10430678 YP_004364823.1 CDS Tresu_0585 NC_015385.1 641659 643161 D COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: apa:APP7_1530 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA methylase; HsdM N-terminal domain; N-6 DNA methylase 641659..643161 Treponema succinifaciens DSM 2489 10430679 YP_004364824.1 CDS Tresu_0586 NC_015385.1 643161 644216 D COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: tde:TDE2745 fic family protein; PFAM: Filamentation induced by cAMP/death on curing-related; SPTR: Fic family protein; PFAM: IclR helix-turn-helix domain; Fic/DOC family; filamentation induced by cAMP protein fic 643161..644216 Treponema succinifaciens DSM 2489 10430680 YP_004364825.1 CDS Tresu_0587 NC_015385.1 644287 644481 D hypothetical protein 644287..644481 Treponema succinifaciens DSM 2489 10430681 YP_004364826.1 CDS Tresu_0588 NC_015385.1 644613 645197 D hypothetical protein 644613..645197 Treponema succinifaciens DSM 2489 10430682 YP_004364827.1 CDS Tresu_0589 NC_015385.1 645194 646675 D COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: hmo:HM1_0633 type I restriction modification DNA specificity domain; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Putative uncharacterized protein; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein 645194..646675 Treponema succinifaciens DSM 2489 10430683 YP_004364828.1 CDS Tresu_0590 NC_015385.1 646705 647337 D KEGG: fps:FP0855 ATPase AAA two-component system response regulatory protein; SPTR: Putative uncharacterized protein; hypothetical protein 646705..647337 Treponema succinifaciens DSM 2489 10430684 YP_004364829.1 CDS Tresu_0591 NC_015385.1 647334 648365 D KEGG: fps:FP0856 ATPase AAA two-component system sensor histidine kinase; SPTR: Putative uncharacterized protein; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; hypothetical protein 647334..648365 Treponema succinifaciens DSM 2489 10430685 YP_004364830.1 CDS Tresu_0592 NC_015385.1 648385 649311 D hypothetical protein 648385..649311 Treponema succinifaciens DSM 2489 10430686 YP_004364831.1 CDS Tresu_0593 NC_015385.1 649308 649955 D COGs: COG3943 Virulence protein; KEGG: lby:Lbys_1357 hypothetical protein; SPTR: Putative DNA-binding protein; hypothetical protein 649308..649955 Treponema succinifaciens DSM 2489 10430687 YP_004364832.1 CDS Tresu_0594 NC_015385.1 649957 651408 D COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: afn:Acfer_0677 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein; SPTR: Putative uncharacterized protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: ATPase AAA efflux protein, MATE family; MATE efflux family protein 649957..651408 Treponema succinifaciens DSM 2489 10430688 YP_004364833.1 CDS Tresu_0595 NC_015385.1 651491 652876 R COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB); InterPro IPR001926:IPR006316; KEGG: bpb:bpr_I1140 tryptophan synthase beta subunit TrpB2; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: Putative uncharacterized protein; TIGRFAM: Tryptophan synthase, beta chain-like; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme; pyridoxal-phosphate dependent TrpB-like protein complement(651491..652876) Treponema succinifaciens DSM 2489 10430689 YP_004364834.1 CDS Tresu_0596 NC_015385.1 653147 653680 D COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: fnu:FN1223 dihydropteridine reductase; PFAM: Nitroreductase-like; SPTR: Putative uncharacterized protein; PFAM: Nitroreductase family; nitroreductase 653147..653680 Treponema succinifaciens DSM 2489 10430690 YP_004364835.1 CDS Tresu_0597 NC_015385.1 653745 654251 R KEGG: mla:Mlab_0585 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(653745..654251) Treponema succinifaciens DSM 2489 10430691 YP_004364836.1 CDS Tresu_0598 NC_015385.1 654275 654898 R InterPro IPR001647; KEGG: cpy:Cphy_1864 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator complement(654275..654898) Treponema succinifaciens DSM 2489 10430692 YP_004364837.1 CDS Tresu_0599 NC_015385.1 655149 655274 D hypothetical protein 655149..655274 Treponema succinifaciens DSM 2489 10430693 YP_004364838.1 CDS Tresu_0600 NC_015385.1 655371 655811 R COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: bde:BDP_1367 acetyltransferase (GNAT) family; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family; GCN5-related N-acetyltransferase complement(655371..655811) Treponema succinifaciens DSM 2489 10430694 YP_004364839.1 CDS Tresu_0601 NC_015385.1 656044 656550 D COGs: COG3663 G:T/U mismatch-specific DNA glycosylase; KEGG: eel:EUBELI_00700 DNA glycosylase; SPTR: DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily; DNA glycosylase 656044..656550 Treponema succinifaciens DSM 2489 10430695 YP_004364840.1 CDS Tresu_0602 NC_015385.1 656644 659310 D COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR015413:IPR013155:IPR002302; KEGG: tde:TDE2339 leucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: Leucine--tRNA ligase; SPTR: Leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; leucyl-tRNA synthetase 656644..659310 Treponema succinifaciens DSM 2489 10430696 YP_004364841.1 CDS Tresu_0603 NC_015385.1 659311 660243 D COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: tde:TDE0634 cation efflux family protein; PFAM: Cation efflux protein; SPTR: Cation efflux family protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 659311..660243 Treponema succinifaciens DSM 2489 10430697 YP_004364842.1 CDS Tresu_0604 NC_015385.1 660408 661403 R COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269; KEGG: tde:TDE0122 dihydrouridine synthase, ATPase AAA; PFAM: tRNA-dihydrouridine synthase; SPTR: tRNA-dihydrouridine synthase; PFAM: dihydrouridine synthase (Dus); dihydrouridine synthase DuS complement(660408..661403) Treponema succinifaciens DSM 2489 10430698 YP_004364843.1 CDS Tresu_0605 NC_015385.1 661400 661903 R InterPro IPR010181; KEGG: cth:Cthe_1399 hypothetical protein; PFAM: CGCAxxGCC motif; SPTR: hypothetical protein; TIGRFAM: CGCAxxGCC motif; PFAM: Putative redox-active protein (C_GCAxxG_C_C); TIGRFAM: C_GCAxxG_C_C family probable redox protein; hypothetical protein complement(661400..661903) Treponema succinifaciens DSM 2489 10430699 YP_004364844.1 CDS Tresu_0606 NC_015385.1 661900 662739 R COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR019591; KEGG: dsy:DSY3438 hypothetical protein; PFAM: ATPase-like, ParA/MinD; SPTR: Putative uncharacterized protein; PFAM: ParA/MinD ATPase like; ParA/MinD-like ATPase complement(661900..662739) Treponema succinifaciens DSM 2489 10430700 YP_004364845.1 CDS Tresu_0607 NC_015385.1 663094 664221 D COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR000715; KEGG: lwe:lwe2467 glycosyl transferase, group 4 family protein; PFAM: glycosyl transferase, family 4; SPTR: Putative uncharacterized protein; PFAM: glycosyl transferase family 4; glycosyl transferase family protein 663094..664221 Treponema succinifaciens DSM 2489 10430701 YP_004364846.1 CDS Tresu_0608 NC_015385.1 664490 666319 D COGs: COG0018 arginyl-tRNA synthetase; HAMAP: arginyl-tRNA synthetase, class Ic; InterPro IPR005148:IPR015945:IPR008909:IPR001278; KEGG: tde:TDE0971 arginyl-tRNA synthetase; PFAM: DALR anticodon binding; arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase, class Ic, N-terminal; PRIAM: arginine--tRNA ligase; SMART: DALR anticodon binding; SPTR: arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase, class Ic; PFAM: DALR anticodon binding domain; arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase 664490..666319 Treponema succinifaciens DSM 2489 10430702 YP_004364847.1 CDS Tresu_0609 NC_015385.1 666721 668085 D COGs: COG0372 Citrate synthase; InterPro IPR002020; KEGG: sta:STHERM_c11610 hypothetical protein; PFAM: Citrate synthase-like; SPTR: Putative uncharacterized protein; PFAM: Citrate synthase; Citrate synthase 666721..668085 Treponema succinifaciens DSM 2489 10430703 YP_004364848.1 CDS Tresu_0610 NC_015385.1 668173 668832 D COGs: COG0576 Molecular chaperone GrpE (heat shock protein); HAMAP: GrpE nucleotide exchange factor; InterPro IPR000740; KEGG: tde:TDE0627 co-chaperone protein GrpE; PFAM: GrpE nucleotide exchange factor; SPTR: protein grpE; PFAM: GrpE; protein grpE 668173..668832 Treponema succinifaciens DSM 2489 10430704 YP_004364849.1 CDS Tresu_0611 NC_015385.1 668878 670827 D COGs: COG0443 Molecular chaperone; HAMAP: Chaperone DnaK; InterPro IPR013126:IPR012725; KEGG: tde:TDE0628 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein dnaK; TIGRFAM: Chaperone DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK; chaperone protein dnaK 668878..670827 Treponema succinifaciens DSM 2489 10430705 YP_004364850.1 CDS Tresu_0612 NC_015385.1 670905 672053 D COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; HAMAP: Chaperone DnaJ; InterPro IPR001623:IPR001305:IPR002939:IPR012724; KEGG: tde:TDE0629 chaperone protein DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich domain; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone protein dnaJ; TIGRFAM: Chaperone DnaJ; PFAM: DnaJ domain; DnaJ C terminal region; DnaJ central domain (4 repeats); TIGRFAM: chaperone protein DnaJ; chaperone protein dnaJ 670905..672053 Treponema succinifaciens DSM 2489 10430706 YP_004364851.1 CDS Tresu_0613 NC_015385.1 672187 673587 D COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822:IPR001932; KEGG: tde:TDE0630 sigma factor regulatory protein, ATPase AAA; PFAM: Sporulation stage II, protein E C-terminal; SMART: protein phosphatase 2C-like; SPTR: Sigma factor regulatory protein, ATPase AAA; PFAM: Stage II sporulation protein E (SpoIIE); protein serine/threonine phosphatase 672187..673587 Treponema succinifaciens DSM 2489 10430707 YP_004364852.1 CDS Tresu_0614 NC_015385.1 673591 675843 D COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822:IPR001932; KEGG: tde:TDE0631 sigma factor regulatory protein, ATPase AAA; PFAM: Sporulation stage II, protein E C-terminal; SMART: protein phosphatase 2C-like; SPTR: Sigma factor regulatory protein, ATPase AAA; PFAM: Stage II sporulation protein E (SpoIIE); protein serine/threonine phosphatase 673591..675843 Treponema succinifaciens DSM 2489 10430708 YP_004364853.1 CDS Tresu_0615 NC_015385.1 675878 676210 D InterPro IPR002645:IPR003658; KEGG: tde:TDE0632 anti-anti-sigma factor; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; anti-anti-sigma factor 675878..676210 Treponema succinifaciens DSM 2489 10430709 YP_004364854.1 CDS Tresu_0616 NC_015385.1 676203 677033 D COGs: COG1876 D-alanyl-D-alanine carboxypeptidase; InterPro IPR003709; KEGG: tde:TDE0633 D-alanyl-D-alanine carboxypeptidase, ATPase AAA; PFAM: peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; SPTR: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; PFAM: D-alanyl-D-alanine carboxypeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 676203..677033 Treponema succinifaciens DSM 2489 10430710 YP_004364855.1 CDS Tresu_0617 NC_015385.1 677030 677641 R COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834; KEGG: ssm:Spirs_1365 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase domain-containing protein hydrolase complement(677030..677641) Treponema succinifaciens DSM 2489 10430711 YP_004364856.1 CDS Tresu_0618 NC_015385.1 677658 678299 R COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: clj:CLJU_c17780 ATPase AAA phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Putative phosphatase; PFAM: haloacid dehalogenase-like hydrolase; haloacid dehalogenase domain-containing protein hydrolase complement(677658..678299) Treponema succinifaciens DSM 2489 10430712 YP_004364857.1 CDS Tresu_0619 NC_015385.1 678500 679834 D KEGG: cpy:Cphy_2466 extracellular solute-binding protein; SPTR: Extracellular solute-binding protein family 1; extracellular solute-binding protein 678500..679834 Treponema succinifaciens DSM 2489 10430713 YP_004364858.1 CDS Tresu_0620 NC_015385.1 679995 680972 D COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: eel:EUBELI_20529 multiple sugar transport system permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Putative uncharacterized protein; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease 679995..680972 Treponema succinifaciens DSM 2489 10430714 YP_004364859.1 CDS Tresu_0621 NC_015385.1 680984 681895 D COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: cpy:Cphy_2464 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Sugar ABC transporter permease; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease 680984..681895 Treponema succinifaciens DSM 2489 10430715 YP_004364860.1 CDS Tresu_0622 NC_015385.1 682033 684102 D COGs: COG0465 ATP-dependent Zn protease; InterProIPR011546:IPR003959:IPR000642:IPR005936:IPR 003593; KEGG: tde:TDE0470 cell division protein FtsH; PFAM: peptidase M41; ATPase, AAA-type, core; peptidase M41, FtsH extracellular; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: Cell division protease FtsH homolog; TIGRFAM: peptidase M41, FtsH; PFAM: FtsH Extracellular; peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH; ATP-dependent metalloprotease FtsH 682033..684102 Treponema succinifaciens DSM 2489 10430716 YP_004364861.1 CDS Tresu_0623 NC_015385.1 684311 684976 R COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: tde:TDE2403 metallo-beta-lactamase family protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like; SPTR: Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein complement(684311..684976) Treponema succinifaciens DSM 2489 10430717 YP_004364862.1 CDS Tresu_0624 NC_015385.1 684973 685833 R InterPro IPR005580; KEGG: tde:TDE2592 DbpA RNA-binding domain-containing protein; PFAM: DbpA, RNA-binding; SPTR: DbpA RNA binding domain protein; PFAM: DbpA RNA binding domain; DbpA RNA-binding domain-containing protein complement(684973..685833) Treponema succinifaciens DSM 2489 10430718 YP_004364863.1 CDS Tresu_0625 NC_015385.1 685904 686833 R InterPro IPR000182; KEGG: sta:STHERM_c02740 hypothetical protein; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family; Uncharacterised protein family (UPF0158); GCN5-related N-acetyltransferase complement(685904..686833) Treponema succinifaciens DSM 2489 10430719 YP_004364864.1 CDS Tresu_0626 NC_015385.1 686844 687494 R COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: peptidase S14, ClpP; InterPro IPR001907; KEGG: tde:TDE2388 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14, ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit 2; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; ATP-dependent Clp protease proteolytic subunit complement(686844..687494) Treponema succinifaciens DSM 2489 10430720 YP_004364865.1 CDS Tresu_0627 NC_015385.1 687732 688568 R COGs: COG3956 protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR004518:IPR011551; KEGG: tde:TDE2286 MazG family protein; PFAM: NTP pyrophosphohydrolase MazG, ATPase AAA catalytic core; SPTR: MazG family protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein; MazG family protein complement(687732..688568) Treponema succinifaciens DSM 2489 10430721 YP_004364866.1 CDS Tresu_0628 NC_015385.1 688582 689244 R COGs: COG0193 peptidyl-tRNA hydrolase; HAMAP: peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: tde:TDE0643 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase complement(688582..689244) Treponema succinifaciens DSM 2489 10430722 YP_004364867.1 CDS Tresu_0629 NC_015385.1 689314 690030 R COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR000005:IPR018060; KEGG: eel:EUBELI_01711 two-component system, response regulator YesN; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Two-component system, response regulator YesN; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC family transcriptional regulator complement(689314..690030) Treponema succinifaciens DSM 2489 10430723 YP_004364868.1 CDS Tresu_0630 NC_015385.1 690027 691067 R KEGG: bcl:ABC3321 metal-dependent phosphohydrolase; SPTR: Putative uncharacterized protein; hypothetical protein complement(690027..691067) Treponema succinifaciens DSM 2489 10430724 YP_004364869.1 CDS Tresu_0631 NC_015385.1 691124 692335 R COGs: COG0523 Putative GTPase (G3E family); InterPro IPR003495:IPR011629; KEGG: pmz:HMPREF0659_A5888 CobW/P47K family protein; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: Cobalamin synthesis protein/P47K family protein; PFAM: CobW/HypB/UreG, nucleotide-binding domain; Cobalamin synthesis protein cobW C-terminal domain; cobalamin synthesis protein P47K complement(691124..692335) Treponema succinifaciens DSM 2489 10430725 YP_004364870.1 CDS Tresu_0632 NC_015385.1 692632 694692 D COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: tde:TDE2549 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: methyl-accepting chemotaxis protein; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer 692632..694692 Treponema succinifaciens DSM 2489 10430726 YP_004364871.1 CDS Tresu_0633 NC_015385.1 694916 697795 D KEGG: tde:TDE0086 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 694916..697795 Treponema succinifaciens DSM 2489 10430727 YP_004364872.1 CDS Tresu_0634 NC_015385.1 697792 701589 D COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: tde:TDE0085 ATP-dependent DNA helicase UvrD; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase, UvrD/Rep family; PFAM: UvrD/REP helicase; UvrD/REP helicase 697792..701589 Treponema succinifaciens DSM 2489 10430728 YP_004364873.1 CDS Tresu_0635 NC_015385.1 701593 702339 R COGs: COG3884 acyl-ACP thioesterase; InterPro IPR002864; KEGG: gym:GYMC10_0920 acyl-ACP thioesterase; PFAM: acyl-ACP thioesterase; SPTR: Putative uncharacterized protein; PFAM: acyl-ACP thioesterase; acyl-ACP thioesterase complement(701593..702339) Treponema succinifaciens DSM 2489 10430729 YP_004364874.1 CDS Tresu_0636 NC_015385.1 702608 703720 D KEGG: tpp:TPASS_1001 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 702608..703720 Treponema succinifaciens DSM 2489 10430730 YP_004364875.1 CDS Tresu_0637 NC_015385.1 703734 704441 R COGs: COG3148 conserved hypothetical protein; InterPro IPR005636; KEGG: ant:Arnit_1979 DTW domain containing protein; PFAM: DTW; SPTR: Putative uncharacterized protein; PFAM: DTW domain; DTW domain containing protein complement(703734..704441) Treponema succinifaciens DSM 2489 10430731 YP_004364876.1 CDS Tresu_0638 NC_015385.1 704527 704739 R HAMAP: ribosomal protein S21; InterPro IPR001911; KEGG: tde:TDE2473 30S ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; TIGRFAM: ribosomal protein S21; 30S ribosomal protein S21 complement(704527..704739) Treponema succinifaciens DSM 2489 10430732 YP_004364877.1 CDS Tresu_0639 NC_015385.1 704853 706367 R COGs: COG1109 phosphomannomutase; InterPro IPR005844:IPR005845; KEGG: cyt:cce_4682 ATPase AAA phosphoglucomutases; PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; alpha-D-phosphohexomutase, alpha/beta/alpha domain II; SPTR: phosphoglucomutase/phosphomannomutase family protein; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I complement(704853..706367) Treponema succinifaciens DSM 2489 10430733 YP_004364878.1 CDS Tresu_0640 NC_015385.1 706442 707230 R COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding; InterPro IPR015376:IPR000086; KEGG: pmy:Pmen_2071 NADH pyrophosphatase; PFAM: NUDIX hydrolase domain; Zinc ribbon, NADH pyrophosphatase; PRIAM: NAD(+) diphosphatase; SPTR: NADH pyrophosphatase; PFAM: NUDIX domain; NAD(+) diphosphatase complement(706442..707230) Treponema succinifaciens DSM 2489 10430734 YP_004364879.1 CDS Tresu_0641 NC_015385.1 707365 708135 R KEGG: tde:TDE2734 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(707365..708135) Treponema succinifaciens DSM 2489 10430735 YP_004364880.1 CDS Tresu_0642 NC_015385.1 708342 709073 R COGs: COG2856 Zn peptidase; InterPro IPR010359; KEGG: saj:SaurJH9_0852 hypothetical protein; PFAM: protein of unknown function DUF955; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF955); hypothetical protein complement(708342..709073) Treponema succinifaciens DSM 2489 10430736 YP_004364881.1 CDS Tresu_0643 NC_015385.1 709073 709405 R InterPro IPR001387; KEGG: aoe:Clos_1853 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix; hypothetical protein complement(709073..709405) Treponema succinifaciens DSM 2489 10430737 YP_004364882.1 CDS Tresu_0644 NC_015385.1 709793 710125 R KEGG: ssm:Spirs_2166 transcriptional regulator, XRE family; SPTR: Transcriptional regulator, XRE family; PFAM: Bacteriophage CI repressor helix-turn-helix domain; XRE family transcriptional regulator complement(709793..710125) Treponema succinifaciens DSM 2489 10430738 YP_004364883.1 CDS Tresu_0645 NC_015385.1 710242 711804 D COGs: COG2189 adenine specific DNA methylase Mod; InterPro IPR002941; KEGG: ngk:NGK_1384 ATPase AAA type III restriction-modification system methyltransferase; PFAM: DNA methylase N-4/N-6; SPTR: Putative type III restriction-modification system methyltransferase; PFAM: DNA methylase; DNA methylase N-4/N-6 domain-containing protein 710242..711804 Treponema succinifaciens DSM 2489 10430739 YP_004364884.1 CDS Tresu_0646 NC_015385.1 711877 713874 D InterPro IPR006935; KEGG: hac:Hac_0712 hypothetical protein; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SPTR: Putative uncharacterized protein; PFAM: Type III restriction enzyme, res subunit; type III restriction protein res subunit 711877..713874 Treponema succinifaciens DSM 2489 10430740 YP_004364885.1 CDS Tresu_0647 NC_015385.1 713970 714755 D InterPro IPR003346; KEGG: bpb:bpr_IV010 IS110 family transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: Transposase IS110 family; PFAM: Transposase IS116/IS110/IS902 family; transposase IS116/IS110/IS902 family protein 713970..714755 Treponema succinifaciens DSM 2489 10430741 YP_004364886.1 CDS Tresu_0648 NC_015385.1 715130 715660 D KEGG: abb:ABBFA_002533 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 715130..715660 Treponema succinifaciens DSM 2489 10430742 YP_004364887.1 CDS Tresu_0649 NC_015385.1 716056 717288 D COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011946:IPR002104; KEGG: cph:Cpha266_0257 integron integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integron integrase; TIGRFAM: Integrase, integron-type; PFAM: Phage integrase family; TIGRFAM: integron integrase; integron integrase 716056..717288 Treponema succinifaciens DSM 2489 10430743 YP_004364888.1 CDS Tresu_0650 NC_015385.1 717469 718260 D hypothetical protein 717469..718260 Treponema succinifaciens DSM 2489 10430744 YP_004364889.1 CDS Tresu_0651 NC_015385.1 718367 719077 D KEGG: pat:Patl_2626 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 718367..719077 Treponema succinifaciens DSM 2489 10430745 YP_004364890.1 CDS Tresu_0652 NC_015385.1 719181 719978 D hypothetical protein 719181..719978 Treponema succinifaciens DSM 2489 10430746 YP_004364891.1 CDS Tresu_0653 NC_015385.1 720083 720724 D hypothetical protein 720083..720724 Treponema succinifaciens DSM 2489 10430747 YP_004364892.1 CDS Tresu_0654 NC_015385.1 720922 721434 D COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: cpf:CPF_0794 NUDIX family hydrolase; PFAM: NUDIX hydrolase domain; SPTR: ADP-ribose pyrophosphatase; PFAM: NUDIX domain; NUDIX hydrolase 720922..721434 Treponema succinifaciens DSM 2489 10430748 YP_004364893.1 CDS Tresu_0655 NC_015385.1 721505 721792 D COGs: COG2929 conserved hypothetical protein; InterPro IPR007460; KEGG: cbd:CBUD_0131 hypothetical cytosolic protein; PFAM: protein of unknown function DUF497; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF497); hypothetical protein 721505..721792 Treponema succinifaciens DSM 2489 10430749 YP_004364894.1 CDS Tresu_0656 NC_015385.1 721794 722006 D KEGG: nhl:Nhal_1268 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 721794..722006 Treponema succinifaciens DSM 2489 10430750 YP_004364895.1 CDS Tresu_0657 NC_015385.1 722118 722921 D hypothetical protein 722118..722921 Treponema succinifaciens DSM 2489 10430751 YP_004364896.1 CDS Tresu_0658 NC_015385.1 723390 723809 D hypothetical protein 723390..723809 Treponema succinifaciens DSM 2489 10430752 YP_004364897.1 CDS Tresu_0659 NC_015385.1 724052 724294 D hypothetical protein 724052..724294 Treponema succinifaciens DSM 2489 10430753 YP_004364898.1 CDS Tresu_0660 NC_015385.1 724316 725134 D hypothetical protein 724316..725134 Treponema succinifaciens DSM 2489 10430754 YP_004364899.1 CDS Tresu_0661 NC_015385.1 725323 726444 D InterPro IPR013247; KEGG: tde:TDE0546 hypothetical protein; PFAM: SH3, type 3; SPTR: Putative uncharacterized protein; SH3 type 3 domain-containing protein 725323..726444 Treponema succinifaciens DSM 2489 10430755 YP_004364900.1 CDS Tresu_0662 NC_015385.1 726617 726952 D InterPro IPR007829; KEGG: coc:Coch_1399 TM2 domain containing protein; SPTR: Putative uncharacterized protein; PFAM: TM2 domain; TM2 domain-containing protein 726617..726952 Treponema succinifaciens DSM 2489 10430756 YP_004364901.1 CDS Tresu_0663 NC_015385.1 727017 727277 D KEGG: cob:COB47_0151 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF2752); hypothetical protein 727017..727277 Treponema succinifaciens DSM 2489 10430757 YP_004364902.1 CDS Tresu_0664 NC_015385.1 727354 727581 D SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF2281); hypothetical protein 727354..727581 Treponema succinifaciens DSM 2489 10430758 YP_004364903.1 CDS Tresu_0665 NC_015385.1 727578 727955 D COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: tde:TDE0671 PilT domain-containing protein; PFAM: PilT protein, N-terminal; SPTR: PIN domain protein; PFAM: PIN domain; PilT protein domain-containing protein 727578..727955 Treponema succinifaciens DSM 2489 10430759 YP_004364904.1 CDS Tresu_0666 NC_015385.1 728461 728835 R KEGG: bfs:BF2786 hypothetical protein; SPTR: DNA-binding protein, histone-like, ATPase AAA; PFAM: Bacterial DNA-binding protein; TIGRFAM: DNA-binding protein, histone-like, ATPase AAA; hypothetical protein complement(728461..728835) Treponema succinifaciens DSM 2489 10430760 YP_004364905.1 CDS Tresu_0667 NC_015385.1 729195 729416 D KEGG: hmo:HM1_0624 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 729195..729416 Treponema succinifaciens DSM 2489 10430761 YP_004364906.1 CDS Tresu_0668 NC_015385.1 729505 730413 D COGs: COG0338 Site-specific DNA methylase; InterPro IPR012327; KEGG: ran:Riean_1788 DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: DNA adenine methylase; TIGRFAM: D12 class N6 adenine-specific DNA methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam); DNA adenine methylase 729505..730413 Treponema succinifaciens DSM 2489 10430762 YP_004364907.1 CDS Tresu_0669 NC_015385.1 730415 731482 D COGs: COG3392 adenine-specific DNA methylase; InterPro IPR012327; KEGG: ran:Riean_1789 site-specific DNA-methyltransferase (adenine-specific); PFAM: D12 class N6 adenine-specific DNA methyltransferase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Modification methylase FokI family protein; PFAM: D12 class N6 adenine-specific DNA methyltransferase; adenine-specific DNA-methyltransferase 730415..731482 Treponema succinifaciens DSM 2489 10430763 YP_004364908.1 CDS Tresu_0670 NC_015385.1 731484 732872 D KEGG: ran:Riean_1790 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 731484..732872 Treponema succinifaciens DSM 2489 10430764 YP_004364909.1 CDS Tresu_0671 NC_015385.1 732874 734007 D InterPro IPR002941; KEGG: hpc:HPPC_07210 ATPase AAA RNA methylase; PFAM: DNA methylase N-4/N-6; SPTR: DNA-methyltransferase; PFAM: DNA methylase; DNA methylase N-4/N-6 domain-containing protein 732874..734007 Treponema succinifaciens DSM 2489 10430765 YP_004364910.1 CDS Tresu_0672 NC_015385.1 734004 736247 D COGs: COG4694 conserved hypothetical protein; KEGG: llo:LLO_2868 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 734004..736247 Treponema succinifaciens DSM 2489 10430766 YP_004364911.1 CDS Tresu_0673 NC_015385.1 736651 737865 R COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: ssb:SSUBM407_0724 transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: ISCps8, transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein complement(736651..737865) Treponema succinifaciens DSM 2489 10430767 YP_004364912.1 CDS Tresu_0674 NC_015385.1 738076 740367 D KEGG: mhp:MHP7448_0463 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 738076..740367 Treponema succinifaciens DSM 2489 10430768 YP_004364913.1 CDS Tresu_0675 NC_015385.1 740525 741388 D KEGG: pme:NATL1_00411 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 740525..741388 Treponema succinifaciens DSM 2489 10430769 YP_004364914.1 CDS Tresu_0676 NC_015385.1 741748 742227 D hypothetical protein 741748..742227 Treponema succinifaciens DSM 2489 10430770 YP_004364915.1 CDS Tresu_0677 NC_015385.1 742654 743067 D SPTR: Putative uncharacterized protein; hypothetical protein 742654..743067 Treponema succinifaciens DSM 2489 10430771 YP_004364916.1 CDS Tresu_0678 NC_015385.1 743184 743795 D hypothetical protein 743184..743795 Treponema succinifaciens DSM 2489 10430772 YP_004364917.1 CDS Tresu_0679 NC_015385.1 743968 744303 D InterPro IPR007829; KEGG: coc:Coch_1399 TM2 domain containing protein; SPTR: Putative uncharacterized protein; PFAM: TM2 domain; TM2 domain-containing protein 743968..744303 Treponema succinifaciens DSM 2489 10430773 YP_004364918.1 CDS Tresu_0680 NC_015385.1 744368 744628 D KEGG: cob:COB47_0151 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF2752); hypothetical protein 744368..744628 Treponema succinifaciens DSM 2489 10430774 YP_004364919.1 CDS Tresu_0681 NC_015385.1 744705 744932 D SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF2281); hypothetical protein 744705..744932 Treponema succinifaciens DSM 2489 10430775 YP_004364920.1 CDS Tresu_0682 NC_015385.1 744929 745306 D COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: tde:TDE0671 PilT domain-containing protein; PFAM: PilT protein, N-terminal; SPTR: PIN domain protein; PFAM: PIN domain; PilT protein domain-containing protein 744929..745306 Treponema succinifaciens DSM 2489 10430776 YP_004364921.1 CDS Tresu_0683 NC_015385.1 745479 745931 D hypothetical protein 745479..745931 Treponema succinifaciens DSM 2489 10430777 YP_004364922.1 CDS Tresu_0684 NC_015385.1 745928 746668 D InterPro IPR011528:IPR013498; KEGG: zpr:ZPR_4418 hypothetical membrane protein; PFAM: NERD; DNA topoisomerase, type IA, zn finger; SPTR: Hypothetical membrane protein; PFAM: Nuclease-related domain; Topoisomerase DNA binding C4 zinc finger; NERD domain-containing protein 745928..746668 Treponema succinifaciens DSM 2489 10430778 YP_004364923.1 CDS Tresu_0685 NC_015385.1 746763 747560 D InterPro IPR002559; KEGG: pcu:pc1492 hypothetical protein; PFAM: Transposase, IS4-like; SPTR: Putative transposase; PFAM: Transposase DDE domain; transposase IS4 family protein 746763..747560 Treponema succinifaciens DSM 2489 10430779 YP_004364924.1 CDS Tresu_0686 NC_015385.1 747762 748430 D KEGG: dat:HRM2_19130 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 747762..748430 Treponema succinifaciens DSM 2489 10430780 YP_004364925.1 CDS Tresu_0687 NC_015385.1 748793 749860 D COGs: COG3274 conserved hypothetical protein; KEGG: ere:EUBREC_2644 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: acyltransferase family; hypothetical protein 748793..749860 Treponema succinifaciens DSM 2489 10430781 YP_004364926.1 CDS Tresu_0688 NC_015385.1 750019 751113 D KEGG: pin:Ping_1180 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: acyltransferase family; hypothetical protein 750019..751113 Treponema succinifaciens DSM 2489 10430782 YP_004364927.1 CDS Tresu_0689 NC_015385.1 751306 751626 D SPTR: Putative uncharacterized protein; hypothetical protein 751306..751626 Treponema succinifaciens DSM 2489 10430783 YP_004364928.1 CDS Tresu_0690 NC_015385.1 751885 752214 D hypothetical protein 751885..752214 Treponema succinifaciens DSM 2489 10430784 YP_004364929.1 CDS Tresu_0692 NC_015385.1 753729 753854 R hypothetical protein complement(753729..753854) Treponema succinifaciens DSM 2489 10430786 YP_004364930.1 CDS Tresu_0693 NC_015385.1 754148 755362 R COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: ssb:SSUBM407_0724 transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: ISCps8, transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein complement(754148..755362) Treponema succinifaciens DSM 2489 10430787 YP_004364931.1 CDS Tresu_0694 NC_015385.1 755551 756249 D InterPro IPR019070; KEGG: cyt:cce_3474 ATPase AAA type II site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type II, SinI; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Type II site-specific deoxyribonuclease; PFAM: SinI restriction endonuclease; type II site-specific deoxyribonuclease 755551..756249 Treponema succinifaciens DSM 2489 10430788 YP_004364932.1 CDS Tresu_0695 NC_015385.1 756294 757724 R COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: fsu:Fisuc_0930 DNA-cytosine methyltransferase; PFAM: C-5 cytosine methyltransferase; SPTR: Cytosine specific DNA methyltransferase; TIGRFAM: C-5 cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA binding domain, excisionase family; DNA-cytosine methyltransferase complement(756294..757724) Treponema succinifaciens DSM 2489 10430789 YP_004364933.1 CDS Tresu_0696 NC_015385.1 757789 758457 D hypothetical protein 757789..758457 Treponema succinifaciens DSM 2489 10430790 YP_004364934.1 CDS Tresu_0697 NC_015385.1 758441 758644 D hypothetical protein 758441..758644 Treponema succinifaciens DSM 2489 10430791 YP_004364935.1 CDS Tresu_0699 NC_015385.1 760442 761557 D COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: elm:ELI_1978 acyltransferase 3; PFAM: acyltransferase 3; SPTR: acyltransferase 3; PFAM: acyltransferase family; acyltransferase 3 760442..761557 Treponema succinifaciens DSM 2489 10430793 YP_004364936.1 CDS Tresu_0700 NC_015385.1 761538 761690 R hypothetical protein complement(761538..761690) Treponema succinifaciens DSM 2489 10430794 YP_004364937.1 CDS Tresu_0701 NC_015385.1 761721 762788 D COGs: COG3274 conserved hypothetical protein; KEGG: ere:EUBREC_2644 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; PFAM: acyltransferase family; hypothetical protein 761721..762788 Treponema succinifaciens DSM 2489 10430795 YP_004364938.1 CDS Tresu_0702 NC_015385.1 762858 763604 D KEGG: syp:SYNPCC7002_A0598 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 762858..763604 Treponema succinifaciens DSM 2489 10430796 YP_004364939.1 CDS Tresu_0703 NC_015385.1 763998 765293 D COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: bgf:BC1003_0968 DNA-cytosine methyltransferase; PFAM: C-5 cytosine methyltransferase; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: C-5 cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA-cytosine methyltransferase 763998..765293 Treponema succinifaciens DSM 2489 10430797 YP_004364940.1 CDS Tresu_0704 NC_015385.1 765304 766476 D InterPro IPR015300:IPR015109; KEGG: ere:EUBREC_0164 ATPase AAA type II restriction enzyme; PFAM: Restriction endonuclease, type II, EcoRII, C-terminal; Restriction endonuclease, type II, EcoRII, N-terminal; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Putative type II restriction enzyme; PFAM: EcoRII C terminal; Restriction endonuclease EcoRII, N-terminal; type II site-specific deoxyribonuclease 765304..766476 Treponema succinifaciens DSM 2489 10430798 YP_004364941.1 CDS Tresu_0705 NC_015385.1 767028 768242 R COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: ssb:SSUBM407_0724 transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: ISCps8, transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein complement(767028..768242) Treponema succinifaciens DSM 2489 10430799 YP_004364942.1 CDS Tresu_0706 NC_015385.1 768420 768884 D hypothetical protein 768420..768884 Treponema succinifaciens DSM 2489 10430800 YP_004364943.1 CDS Tresu_0707 NC_015385.1 768953 769234 D COGs: COG3549 Plasmid maintenance system killer protein; InterPro IPR007711; KEGG: pla:Plav_2941 plasmid maintenance system killer; PFAM: Plasmid maintenance system killer; SPTR: Plasmid maintenance system killer; PFAM: Plasmid maintenance system killer protein; plasmid maintenance system killer protein 768953..769234 Treponema succinifaciens DSM 2489 10430801 YP_004364944.1 CDS Tresu_0708 NC_015385.1 769209 769526 D COGs: COG3093 Plasmid maintenance system antidote protein; InterPro IPR013430:IPR001387; KEGG: gfo:GFO_1993 plasmid maintenance system antidote protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Addiction module antidote protein, HigA family; TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix; TIGRFAM: addiction module antidote protein, HigA family; XRE family transcriptional regulator 769209..769526 Treponema succinifaciens DSM 2489 10430802 YP_004364945.1 CDS Tresu_0710 NC_015385.1 771574 771903 D hypothetical protein 771574..771903 Treponema succinifaciens DSM 2489 10430804 YP_004364946.1 CDS Tresu_0711 NC_015385.1 771920 772831 D KEGG: fjo:Fjoh_0919 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 771920..772831 Treponema succinifaciens DSM 2489 10430805 YP_004364947.1 CDS Tresu_0712 NC_015385.1 773339 774589 D KEGG: lpf:lpl2135 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 773339..774589 Treponema succinifaciens DSM 2489 10430806 YP_004364948.1 CDS Tresu_0713 NC_015385.1 774737 775912 D COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: cbb:CLD_2548 DNA-cytosine methyltransferase; PFAM: C-5 cytosine methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: C-5 cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA-cytosine methyltransferase 774737..775912 Treponema succinifaciens DSM 2489 10430807 YP_004364949.1 CDS Tresu_0714 NC_015385.1 775912 776802 D SPTR: BsaWI endonuclease; hypothetical protein 775912..776802 Treponema succinifaciens DSM 2489 10430808 YP_004364950.1 CDS Tresu_0715 NC_015385.1 777177 778391 R COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: ssb:SSUBM407_0724 transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: ISCps8, transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein complement(777177..778391) Treponema succinifaciens DSM 2489 10430809 YP_004364951.1 CDS Tresu_0716 NC_015385.1 778596 779663 D COGs: COG3274 conserved hypothetical protein; KEGG: ere:EUBREC_2644 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; PFAM: acyltransferase family; hypothetical protein 778596..779663 Treponema succinifaciens DSM 2489 10430810 YP_004364952.1 CDS Tresu_0717 NC_015385.1 779809 780564 D hypothetical protein 779809..780564 Treponema succinifaciens DSM 2489 10430811 YP_004364953.1 CDS Tresu_0718 NC_015385.1 780947 781567 D hypothetical protein 780947..781567 Treponema succinifaciens DSM 2489 10430812 YP_004364954.1 CDS Tresu_0719 NC_015385.1 782286 783398 D InterPro IPR002110; KEGG: tva:TVAG_496720 ankyrin repeat protein; SPTR: Ankyrin repeat protein, ATPase AAA; hypothetical protein 782286..783398 Treponema succinifaciens DSM 2489 10430813 YP_004364955.1 CDS Tresu_0721 NC_015385.1 784164 784646 D hypothetical protein 784164..784646 Treponema succinifaciens DSM 2489 10430815 YP_004364956.1 CDS Tresu_0722 NC_015385.1 784720 784968 D InterPro IPR006339:IPR007159; KEGG: tde:TDE0037 AbrB family transcriptional regulator; PFAM: Transcription regulator AbrB/SpoV, predicted; SMART: Transcription regulator AbrB/SpoV, predicted; SPTR: Transcriptional regulator, AbrB family; TIGRFAM: Transcription regulator AbrB; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family; AbrB family transcriptional regulator 784720..784968 Treponema succinifaciens DSM 2489 10430816 YP_004364957.1 CDS Tresu_0723 NC_015385.1 784965 785375 D InterPro IPR002850; KEGG: tde:TDE0036 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: protein of unknown function DUF132; PFAM: PIN domain; TIGRFAM: ATPase AAA toxin-antitoxin system toxin component, PIN family; hypothetical protein 784965..785375 Treponema succinifaciens DSM 2489 10430817 YP_004364958.1 CDS Tresu_0724 NC_015385.1 785478 786167 D InterPro IPR002734; KEGG: abi:Aboo_0416 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; SPTR: Putative uncharacterized protein; PFAM: RibD C-terminal domain; bifunctional deaminase-reductase domain-containing protein 785478..786167 Treponema succinifaciens DSM 2489 10430818 YP_004364959.1 CDS Tresu_0726 NC_015385.1 788192 788809 D hypothetical protein 788192..788809 Treponema succinifaciens DSM 2489 10430820 YP_004364960.1 CDS Tresu_0727 NC_015385.1 788817 789014 D hypothetical protein 788817..789014 Treponema succinifaciens DSM 2489 10430821 YP_004364961.1 CDS Tresu_0728 NC_015385.1 789014 790990 D hypothetical protein 789014..790990 Treponema succinifaciens DSM 2489 10430822 YP_004364962.1 CDS Tresu_0729 NC_015385.1 790974 791678 D hypothetical protein 790974..791678 Treponema succinifaciens DSM 2489 10430823 YP_004364963.1 CDS Tresu_0730 NC_015385.1 791690 791842 D hypothetical protein 791690..791842 Treponema succinifaciens DSM 2489 10430824 YP_004364964.1 CDS Tresu_0731 NC_015385.1 791847 792044 D hypothetical protein 791847..792044 Treponema succinifaciens DSM 2489 10430825 YP_004364965.1 CDS Tresu_0732 NC_015385.1 792044 793318 D hypothetical protein 792044..793318 Treponema succinifaciens DSM 2489 10430826 YP_004364966.1 CDS Tresu_0733 NC_015385.1 793315 793878 D hypothetical protein 793315..793878 Treponema succinifaciens DSM 2489 10430827 YP_004364967.1 CDS Tresu_0734 NC_015385.1 793898 794455 D hypothetical protein 793898..794455 Treponema succinifaciens DSM 2489 10430828 YP_004364968.1 CDS Tresu_0735 NC_015385.1 794466 796175 D hypothetical protein 794466..796175 Treponema succinifaciens DSM 2489 10430829 YP_004364969.1 CDS Tresu_0736 NC_015385.1 796178 797254 D InterPro IPR011647; KEGG: cno:NT01CX_1069 hypothetical protein; PFAM: KWG Leptospira; SPTR: KWG Leptospira; KWG repeat-containing protein 796178..797254 Treponema succinifaciens DSM 2489 10430830 YP_004364970.1 CDS Tresu_0737 NC_015385.1 797254 797724 D hypothetical protein 797254..797724 Treponema succinifaciens DSM 2489 10430831 YP_004364971.1 CDS Tresu_0738 NC_015385.1 797790 798278 D hypothetical protein 797790..798278 Treponema succinifaciens DSM 2489 10430832 YP_004364972.1 CDS Tresu_0739 NC_015385.1 798407 798883 D hypothetical protein 798407..798883 Treponema succinifaciens DSM 2489 10430833 YP_004364973.1 CDS Tresu_0740 NC_015385.1 799325 800539 R COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: ssb:SSUBM407_0724 transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: ISCps8, transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein complement(799325..800539) Treponema succinifaciens DSM 2489 10430834 YP_004364974.1 CDS Tresu_0741 NC_015385.1 800766 801101 D InterPro IPR007829; KEGG: coc:Coch_1399 TM2 domain containing protein; SPTR: Putative uncharacterized protein; PFAM: TM2 domain; TM2 domain-containing protein 800766..801101 Treponema succinifaciens DSM 2489 10430835 YP_004364975.1 CDS Tresu_0742 NC_015385.1 801166 801426 D KEGG: cob:COB47_0151 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF2752); hypothetical protein 801166..801426 Treponema succinifaciens DSM 2489 10430836 YP_004364976.1 CDS Tresu_0743 NC_015385.1 801503 801730 D SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF2281); hypothetical protein 801503..801730 Treponema succinifaciens DSM 2489 10430837 YP_004364977.1 CDS Tresu_0744 NC_015385.1 801727 802104 D COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: tde:TDE0671 PilT domain-containing protein; PFAM: PilT protein, N-terminal; SPTR: PIN domain protein; PFAM: PIN domain; PilT protein domain-containing protein 801727..802104 Treponema succinifaciens DSM 2489 10430838 YP_004364978.1 CDS Tresu_0745 NC_015385.1 802348 802689 D KEGG: dsa:Desal_1433 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 802348..802689 Treponema succinifaciens DSM 2489 10430839 YP_004364979.1 CDS Tresu_0746 NC_015385.1 802790 803023 D COGs: COG2336 Growth regulator; InterPro IPR007159; KEGG: lil:LA_1780 transcriptional regulator/antitoxin MazE; PFAM: Transcription regulator AbrB/SpoV, predicted; SMART: Transcription regulator AbrB/SpoV, predicted; SPTR: PemI family protein; PFAM: SpoVT / AbrB like domain; MazE family transcriptional regulator 802790..803023 Treponema succinifaciens DSM 2489 10430840 YP_004364980.1 CDS Tresu_0747 NC_015385.1 803017 803355 D COGs: COG2337 Growth inhibitor; InterPro IPR003477; KEGG: lil:LA_1781 ppGpp-regulated growth inhibitor ChpA/MazF; PFAM: PemK-like protein; SPTR: ChpA protein; PFAM: PemK-like protein; MazF family transcriptional regulator 803017..803355 Treponema succinifaciens DSM 2489 10430841 YP_004364981.1 CDS Tresu_0749 NC_015385.1 805151 805771 D hypothetical protein 805151..805771 Treponema succinifaciens DSM 2489 10430843 YP_004364982.1 CDS Tresu_0750 NC_015385.1 805776 805973 D hypothetical protein 805776..805973 Treponema succinifaciens DSM 2489 10430844 YP_004364983.1 CDS Tresu_0751 NC_015385.1 805973 807397 D KEGG: bmq:BMQ_2683 bacillus transposase protein; SPTR: Putative uncharacterized protein; hypothetical protein 805973..807397 Treponema succinifaciens DSM 2489 10430845 YP_004364984.1 CDS Tresu_0752 NC_015385.1 807417 807866 D KEGG: bcy:Bcer98_1958 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 807417..807866 Treponema succinifaciens DSM 2489 10430846 YP_004364985.1 CDS Tresu_0753 NC_015385.1 807912 808811 D hypothetical protein 807912..808811 Treponema succinifaciens DSM 2489 10430847 YP_004364986.1 CDS Tresu_0754 NC_015385.1 808825 809379 D hypothetical protein 808825..809379 Treponema succinifaciens DSM 2489 10430848 YP_004364987.1 CDS Tresu_0756 NC_015385.1 810184 810381 D hypothetical protein 810184..810381 Treponema succinifaciens DSM 2489 10430850 YP_004364988.1 CDS Tresu_0757 NC_015385.1 810381 812249 D hypothetical protein 810381..812249 Treponema succinifaciens DSM 2489 10430851 YP_004364989.1 CDS Tresu_0758 NC_015385.1 812255 813136 D KEGG: cbe:Cbei_3040 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme; hypothetical protein 812255..813136 Treponema succinifaciens DSM 2489 10430852 YP_004364990.1 CDS Tresu_0759 NC_015385.1 813250 813753 D hypothetical protein 813250..813753 Treponema succinifaciens DSM 2489 10430853 YP_004364991.1 CDS Tresu_0761 NC_015385.1 814208 815356 D KEGG: ate:Athe_0718 KWG repeat-containing protein; SPTR: KWG repeat domain protein; hypothetical protein 814208..815356 Treponema succinifaciens DSM 2489 10430855 YP_004364992.1 CDS Tresu_0762 NC_015385.1 815360 816214 D InterPro IPR011647; KEGG: ate:Athe_0718 KWG repeat-containing protein; PFAM: KWG Leptospira; SPTR: KWG Leptospira; KWG repeat-containing protein 815360..816214 Treponema succinifaciens DSM 2489 10430856 YP_004364993.1 CDS Tresu_0763 NC_015385.1 816374 816571 D hypothetical protein 816374..816571 Treponema succinifaciens DSM 2489 10430857 YP_004364994.1 CDS Tresu_0764 NC_015385.1 816571 817851 D KEGG: gmc:GY4MC1_2485 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 816571..817851 Treponema succinifaciens DSM 2489 10430858 YP_004364995.1 CDS Tresu_0765 NC_015385.1 817856 818272 D KEGG: elm:ELI_0228 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 817856..818272 Treponema succinifaciens DSM 2489 10430859 YP_004364996.1 CDS Tresu_0767 NC_015385.1 818675 819940 D KEGG: vsp:VS_II0984 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 818675..819940 Treponema succinifaciens DSM 2489 10430861 YP_004364997.1 CDS Tresu_0769 NC_015385.1 820723 821160 D hypothetical protein 820723..821160 Treponema succinifaciens DSM 2489 10430863 YP_004364998.1 CDS Tresu_0770 NC_015385.1 821237 821434 D KEGG: tde:TDE0281 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 821237..821434 Treponema succinifaciens DSM 2489 10430864 YP_004364999.1 CDS Tresu_0771 NC_015385.1 821431 821832 D InterPro IPR002716; KEGG: tde:TDE0280 PilT domain-containing protein; PFAM: PilT protein, N-terminal; SPTR: PIN domain protein; PFAM: PIN domain; PilT protein domain-containing protein 821431..821832 Treponema succinifaciens DSM 2489 10430865 YP_004365000.1 CDS Tresu_0772 NC_015385.1 822141 822305 D SPTR: Putative uncharacterized protein; hypothetical protein 822141..822305 Treponema succinifaciens DSM 2489 10430866 YP_004365001.1 CDS Tresu_0773 NC_015385.1 822307 822465 D SPTR: Conserved domain protein; hypothetical protein 822307..822465 Treponema succinifaciens DSM 2489 10430867 YP_004365002.1 CDS Tresu_0774 NC_015385.1 822556 822702 D hypothetical protein 822556..822702 Treponema succinifaciens DSM 2489 10430868 YP_004365003.1 CDS Tresu_0775 NC_015385.1 822699 824099 D COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197:IPR006638; KEGG: fsu:Fisuc_0953 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain; Radical SAM domain protein 822699..824099 Treponema succinifaciens DSM 2489 10430869 YP_004365004.1 CDS Tresu_0776 NC_015385.1 824078 826207 D COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439; KEGG: fsu:Fisuc_0952 excinuclease ATPase subunit-like protein; PFAM: ABC transporter-like; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function, DUF258; ABC transporter 824078..826207 Treponema succinifaciens DSM 2489 10430870 YP_004365005.1 CDS Tresu_0778 NC_015385.1 827604 828818 R COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: ssb:SSUBM407_0724 transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: ISCps8, transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein complement(827604..828818) Treponema succinifaciens DSM 2489 10430872 YP_004365006.1 CDS Tresu_0779 NC_015385.1 828849 830426 D InterPro IPR007829; KEGG: brm:Bmur_2846 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: TM2 domain; hypothetical protein 828849..830426 Treponema succinifaciens DSM 2489 10430873 YP_004365007.1 CDS Tresu_0780 NC_015385.1 830475 831602 D KEGG: zpr:ZPR_3215 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 830475..831602 Treponema succinifaciens DSM 2489 10430874 YP_004365008.1 CDS Tresu_0781 NC_015385.1 831616 831936 D hypothetical protein 831616..831936 Treponema succinifaciens DSM 2489 10430875 YP_004365009.1 CDS Tresu_0782 NC_015385.1 831986 832198 D hypothetical protein 831986..832198 Treponema succinifaciens DSM 2489 10430876 YP_004365010.1 CDS Tresu_0783 NC_015385.1 832195 832593 D COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: tra:Trad_0837 PilT domain-containing protein; PFAM: PilT protein, N-terminal; SPTR: PilT protein domain protein; PFAM: PIN domain; PilT protein domain-containing protein 832195..832593 Treponema succinifaciens DSM 2489 10430877 YP_004365011.1 CDS Tresu_0784 NC_015385.1 832717 833157 D InterPro IPR000182; KEGG: cbe:Cbei_2368 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family; GCN5-related N-acetyltransferase 832717..833157 Treponema succinifaciens DSM 2489 10430878 YP_004365012.1 CDS Tresu_0785 NC_015385.1 833318 833677 D InterPro IPR009241; KEGG: pph:Ppha_2124 protein of unknown function DUF891; PFAM: protein of unknown function DUF891; SPTR: Putative uncharacterized protein; PFAM: Phage derived protein Gp49-like (DUF891); hypothetical protein 833318..833677 Treponema succinifaciens DSM 2489 10430879 YP_004365013.1 CDS Tresu_0786 NC_015385.1 833667 833954 D InterPro IPR001387; KEGG: ant:Arnit_1534 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix; hypothetical protein 833667..833954 Treponema succinifaciens DSM 2489 10430880 YP_004365014.1 CDS Tresu_0787 NC_015385.1 834065 834523 D KEGG: sua:Saut_2050 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 834065..834523 Treponema succinifaciens DSM 2489 10430881 YP_004365015.1 CDS Tresu_0788 NC_015385.1 834550 835203 D COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: eat:EAT1b_0973 protein of unknown function DUF541; PFAM: protein of unknown function DUF541; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF541); hypothetical protein 834550..835203 Treponema succinifaciens DSM 2489 10430882 YP_004365016.1 CDS Tresu_0789 NC_015385.1 835576 836790 R COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: ssb:SSUBM407_0724 transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: ISCps8, transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein complement(835576..836790) Treponema succinifaciens DSM 2489 10430883 YP_004365017.1 CDS Tresu_0790 NC_015385.1 836942 837577 D hypothetical protein 836942..837577 Treponema succinifaciens DSM 2489 10430884 YP_004365018.1 CDS Tresu_0791 NC_015385.1 837768 838457 D InterPro IPR002734; KEGG: abi:Aboo_0416 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; SPTR: Putative uncharacterized protein; PFAM: RibD C-terminal domain; bifunctional deaminase-reductase domain-containing protein 837768..838457 Treponema succinifaciens DSM 2489 10430885 YP_004365019.1 CDS Tresu_0793 NC_015385.1 840476 841024 D hypothetical protein 840476..841024 Treponema succinifaciens DSM 2489 10430887 YP_004365020.1 CDS Tresu_0794 NC_015385.1 841111 841455 D KEGG: ssm:Spirs_2529 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 841111..841455 Treponema succinifaciens DSM 2489 10430888 YP_004365021.1 CDS Tresu_0795 NC_015385.1 842018 842395 D InterPro IPR001876; PFAM: Zn-finger in Ran binding protein and others; hypothetical protein 842018..842395 Treponema succinifaciens DSM 2489 10430889 YP_004365022.1 CDS Tresu_0796 NC_015385.1 842469 842849 D COGs: COG4683 conserved hypothetical protein; KEGG: mmw:Mmwyl1_0664 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; PFAM: Phage derived protein Gp49-like (DUF891); hypothetical protein 842469..842849 Treponema succinifaciens DSM 2489 10430890 YP_004365023.1 CDS Tresu_0797 NC_015385.1 842818 843123 D InterPro IPR001387; KEGG: pfs:PFLU2450 hypothetical protein; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; hypothetical protein 842818..843123 Treponema succinifaciens DSM 2489 10430891 YP_004365024.1 CDS Tresu_0798 NC_015385.1 843236 844564 D InterPro IPR004919; KEGG: swo:Swol_2208 hypothetical protein; PFAM: Domain of unknown function DUF262; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function DUF262; hypothetical protein 843236..844564 Treponema succinifaciens DSM 2489 10430892 YP_004365025.1 CDS Tresu_0799 NC_015385.1 844561 846372 D InterPro IPR004919:IPR011089; KEGG: swo:Swol_2207 hypothetical protein; PFAM: Domain of unknown function DUF262; Domain of unknown function DUF1524 RloF; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF1524); protein of unknown function DUF262; hypothetical protein 844561..846372 Treponema succinifaciens DSM 2489 10430893 YP_004365026.1 CDS Tresu_0800 NC_015385.1 846735 847949 R COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: ssb:SSUBM407_0724 transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: ISCps8, transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein complement(846735..847949) Treponema succinifaciens DSM 2489 10430894 YP_004365027.1 CDS Tresu_0801 NC_015385.1 848089 848418 R InterPro IPR001387; KEGG: lgs:LEGAS_1051 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: hypothetical protein; PFAM: Helix-turn-helix; hypothetical protein complement(848089..848418) Treponema succinifaciens DSM 2489 10430895 YP_004365028.1 CDS Tresu_0802 NC_015385.1 848611 848880 D hypothetical protein 848611..848880 Treponema succinifaciens DSM 2489 10430896 YP_004365029.1 CDS Tresu_0803 NC_015385.1 848890 849333 D hypothetical protein 848890..849333 Treponema succinifaciens DSM 2489 10430897 YP_004365030.1 CDS Tresu_0805 NC_015385.1 850221 851699 R COGs: COG0059 Ketol-acid reductoisomerase; InterPro IPR013023:IPR013116:IPR000506; KEGG: rbi:RB2501_14429 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase C-terminal; Acetohydroxy acid isomeroreductase, catalytic; PRIAM: Ketol-acid reductoisomerase; SPTR: Ketol-acid reductoisomerase; TIGRFAM: Acetohydroxy acid isomeroreductase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase; ketol-acid reductoisomerase complement(850221..851699) Treponema succinifaciens DSM 2489 10430899 YP_004365031.1 CDS Tresu_0806 NC_015385.1 851943 853118 R COGs: COG1457 Purine-cytosine permease and related protein; InterPro IPR012732:IPR001248; KEGG: clo:HMPREF0868_1104 ATPase AAA hydroxymethylpyrimidine transporter CytX; PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; SPTR: Putative uncharacterized protein; TIGRFAM: Hydroxymethylpyrimidine transporter CytX; PFAM: Permease for cytosine/purines, uracil, thiamine, allantoin; TIGRFAM: probable hydroxymethylpyrimidine transporter CytX; hydroxymethylpyrimidine transporter CytX complement(851943..853118) Treponema succinifaciens DSM 2489 10430900 YP_004365032.1 CDS Tresu_0807 NC_015385.1 853121 853912 R COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR004399:IPR013749; KEGG: apr:Apre_1397 phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; PRIAM: phosphomethylpyrimidine kinase; SPTR: phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase type-2; PFAM: phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase complement(853121..853912) Treponema succinifaciens DSM 2489 10430901 YP_004365033.1 CDS Tresu_0808 NC_015385.1 854060 854731 R COGs: COG0352 Thiamine monophosphate synthase; HAMAP: Thiamine monophosphate synthase; InterPro IPR003733; KEGG: elm:ELI_3352 hypothetical protein; PFAM: Thiamine monophosphate synthase; SPTR: Thiamine-phosphate pyrophosphorylase; TIGRFAM: Thiamine monophosphate synthase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase; thiamine-phosphate pyrophosphorylase complement(854060..854731) Treponema succinifaciens DSM 2489 10430902 YP_004365034.1 CDS Tresu_0809 NC_015385.1 854718 855536 R COGs: COG2145 Hydroxyethylthiazole kinase sugar kinase family; HAMAP: Hydroxyethylthiazole kinase; InterPro IPR000417; KEGG: cac:CA_C3096 hydroxyethylthiazole kinase; PFAM: Hydroxyethylthiazole kinase; PRIAM: Hydroxyethylthiazole kinase; SPTR: Hydroxyethylthiazole kinase; PFAM: Hydroxyethylthiazole kinase family; TIGRFAM: hydroxyethylthiazole kinase; Hydroxyethylthiazole kinase complement(854718..855536) Treponema succinifaciens DSM 2489 10430903 YP_004365035.1 CDS Tresu_0810 NC_015385.1 855879 856100 D hypothetical protein 855879..856100 Treponema succinifaciens DSM 2489 10430904 YP_004365036.1 CDS Tresu_0811 NC_015385.1 856235 857323 D KEGG: csh:Closa_3523 peptidoglycan-binding lysin domain protein; SPTR: peptidoglycan-binding lysin domain protein; hypothetical protein 856235..857323 Treponema succinifaciens DSM 2489 10430905 YP_004365037.1 CDS Tresu_0812 NC_015385.1 857502 859109 D COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; InterPro IPR002938; KEGG: bfs:BF0553 hypothetical protein; PFAM: Monooxygenase, FAD-binding; SPTR: Oxidoreductase; PFAM: FAD binding domain; monooxygenase FAD-binding protein 857502..859109 Treponema succinifaciens DSM 2489 10430906 YP_004365038.1 CDS Tresu_0813 NC_015385.1 859097 860248 D SPTR: Putative uncharacterized protein; hypothetical protein 859097..860248 Treponema succinifaciens DSM 2489 10430907 YP_004365039.1 CDS Tresu_0814 NC_015385.1 860257 861267 R COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein; InterPro IPR007197; KEGG: tde:TDE2506 radical SAM domain-containing protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily; Radical SAM domain protein complement(860257..861267) Treponema succinifaciens DSM 2489 10430908 YP_004365040.1 CDS Tresu_0815 NC_015385.1 861272 861688 R hypothetical protein complement(861272..861688) Treponema succinifaciens DSM 2489 10430909 YP_004365041.1 CDS Tresu_0816 NC_015385.1 861751 862290 D COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: fba:FIC_00164 hypothetical protein; PFAM: NUDIX hydrolase domain; SPTR: Putative uncharacterized protein; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein; NUDIX hydrolase 861751..862290 Treponema succinifaciens DSM 2489 10430910 YP_004365042.1 CDS Tresu_0817 NC_015385.1 862280 862561 D hypothetical protein 862280..862561 Treponema succinifaciens DSM 2489 10430911 YP_004365043.1 CDS Tresu_0818 NC_015385.1 862840 864525 D COGs: COG1472 beta-glucosidase-related glycosidase; InterPro IPR001764; KEGG: tde:TDE0024 glycosy hydrolase family protein; PFAM: glycoside hydrolase, family 3, N-terminal; SPTR: glycosyl hydrolase, family 3; PFAM: glycosyl hydrolase family 3 N terminal domain; glycoside hydrolase family protein 862840..864525 Treponema succinifaciens DSM 2489 10430913 YP_004365044.1 CDS Tresu_0819 NC_015385.1 864573 864881 R COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR005746:IPR013766; KEGG: rsd:TGRD_011 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin; thioredoxin complement(864573..864881) Treponema succinifaciens DSM 2489 10430914 YP_004365045.1 CDS Tresu_0820 NC_015385.1 864896 865093 R SPTR: Ferredoxin thioredoxin reductase catalytic beta chain; PFAM: Ferredoxin thioredoxin reductase catalytic beta chain; hypothetical protein complement(864896..865093) Treponema succinifaciens DSM 2489 10430915 YP_004365046.1 CDS Tresu_0821 NC_015385.1 865349 867421 D COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; HAMAP: Glucose-inhibited division protein A; InterPro IPR002218:IPR004416; KEGG: tde:TDE0828 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A; tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG 865349..867421 Treponema succinifaciens DSM 2489 10430916 YP_004365047.1 CDS Tresu_0822 NC_015385.1 867421 868437 D COGs: COG4769 membrane protein; InterPro IPR010898; KEGG: tde:TDE1926 hypothetical protein; PFAM: Heptaprenyl diphosphate synthase component I; SPTR: Membrane protein, ATPase AAA; PFAM: Heptaprenyl diphosphate synthase component I; heptaprenyl diphosphate synthase component I 867421..868437 Treponema succinifaciens DSM 2489 10430917 YP_004365048.1 CDS Tresu_0823 NC_015385.1 868434 869567 R COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587:IPR000994; KEGG: btk:BT9727_4344 Xaa-Pro dipeptidase (proline dipeptidase); PFAM: peptidase M24, structural domain; Creatinase; SPTR: Putative uncharacterized protein; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain; peptidase M24 complement(868434..869567) Treponema succinifaciens DSM 2489 10430918 YP_004365049.1 CDS Tresu_0824 NC_015385.1 869586 871196 R COGs: COG0728 membrane protein ATPase AAA virulence factor; InterPro IPR004268; KEGG: tde:TDE0342 integral membrane protein MviN; PFAM: flagellin assembly, membrane protein MviN; SPTR: Integral membrane protein MviN; TIGRFAM: flagellin assembly, membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN; integral membrane protein MviN complement(869586..871196) Treponema succinifaciens DSM 2489 10430919 YP_004365050.1 CDS Tresu_0825 NC_015385.1 871279 873009 D COGs: COG2114 adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054; KEGG: pmx:PERMA_0988 adenylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: adenylate cyclase; PFAM: adenylate and Guanylate cyclase catalytic domain; adenylate/guanylate cyclase 871279..873009 Treponema succinifaciens DSM 2489 10430920 YP_004365051.1 CDS Tresu_0826 NC_015385.1 872988 874487 D KEGG: pfh:PFHG_00976 conserved hypothetical protein; SPTR: Viral A-type inclusion protein, ATPase AAA; hypothetical protein 872988..874487 Treponema succinifaciens DSM 2489 10430921 YP_004365052.1 CDS Tresu_0827 NC_015385.1 874583 875392 D COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR000748:IPR002942:IPR006145; KEGG: bae:BATR1942_12810 ATPase AAA 16S pseudouridylate synthase; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; SMART: RNA-binding S4; SPTR: Putative 16S pseudouridylate synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase; pseudouridine synthase Rsu 874583..875392 Treponema succinifaciens DSM 2489 10430922 YP_004365053.1 CDS Tresu_0828 NC_015385.1 875385 877064 D COGs: COG2759 Formyltetrahydrofolate synthetase; HAMAP: formate-tetrahydrofolate ligase, FTHFS; InterPro IPR000559; KEGG: eel:EUBELI_01474 formate--tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase, FTHFS; PRIAM: formate--tetrahydrofolate ligase; SPTR: formate--tetrahydrofolate ligase; PFAM: formate--tetrahydrofolate ligase; formate--tetrahydrofolate ligase 875385..877064 Treponema succinifaciens DSM 2489 10430923 YP_004365054.1 CDS Tresu_0829 NC_015385.1 877189 877794 R COGs: COG0560 phosphoserine phosphatase; InterPro IPR011863:IPR005834; KEGG: eel:EUBELI_20125 phosphoserine phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Putative uncharacterized protein; TIGRFAM: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; PFAM: Putative Phosphatase; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; bifunctional phosphoserine phosphatase/homoserine phosphotransferase complement(877189..877794) Treponema succinifaciens DSM 2489 10430924 YP_004365055.1 CDS Tresu_0830 NC_015385.1 877902 879500 D COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR005675:IPR000891:IPR013709; KEGG: tmt:Tmath_1610 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; Pyruvate carboxyltransferase; PRIAM: (R)-citramalate synthase; SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; SPTR: 2-isopropylmalate synthase/homocitrate synthase family protein; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase-related; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; 2-isopropylmalate synthase/homocitrate synthase family protein 877902..879500 Treponema succinifaciens DSM 2489 10430925 YP_004365056.1 CDS Tresu_0831 NC_015385.1 879598 880683 D COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; InterPro IPR004429:IPR001804; KEGG: cbt:CLH_0305 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 879598..880683 Treponema succinifaciens DSM 2489 10430926 YP_004365057.1 CDS Tresu_0832 NC_015385.1 880821 882938 D COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR001789; KEGG: fsu:Fisuc_1259 histidine kinase; PFAM: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Sensory box histidine kinase/response regulator; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; histidine kinase 880821..882938 Treponema succinifaciens DSM 2489 10430927 YP_004365058.1 CDS Tresu_0833 NC_015385.1 883082 884350 D COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR022644:IPR022643; KEGG: cni:Calni_0514 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal; PRIAM: Diaminopimelate decarboxylase; SPTR: Diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase; diaminopimelate decarboxylase 883082..884350 Treponema succinifaciens DSM 2489 10430928 YP_004365059.1 CDS Tresu_0834 NC_015385.1 884388 884798 D COGs: COG2703 Hemerythrin; InterPro IPR012827:IPR012312; KEGG: tde:TDE1302 hemerythrin family protein; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: Hemerythrin family protein; TIGRFAM: Haemerythrin-like, metal-binding; PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain; hemerythrin-like metal-binding protein 884388..884798 Treponema succinifaciens DSM 2489 10430929 YP_004365060.1 CDS Tresu_0835 NC_015385.1 885340 885549 D InterPro IPR007167; KEGG: cbe:Cbei_4198 FeoA family protein; PFAM: Ferrous iron transporter, FeoA subunit; SMART: Ferrous iron transporter, FeoA subunit; SPTR: FeoA family protein; PFAM: FeoA domain; FeoA family protein 885340..885549 Treponema succinifaciens DSM 2489 10430930 YP_004365061.1 CDS Tresu_0836 NC_015385.1 885612 885833 D COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167; KEGG: ere:EUBREC_1582 hypothetical protein; PFAM: Ferrous iron transporter, FeoA subunit; SMART: Ferrous iron transporter, FeoA subunit; SPTR: Fe2+ transport system protein A; PFAM: FeoA domain; FeoA family protein 885612..885833 Treponema succinifaciens DSM 2489 10430931 YP_004365062.1 CDS Tresu_0837 NC_015385.1 885835 888102 D COGs: COG0370 Fe2+ transport system protein B; InterProIPR005225:IPR003373:IPR002917:IPR011619:IPR 011642:IPR011640; KEGG: ere:EUBREC_1583 ferrous iron transport protein B; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B, N-terminal; nucleoside recognition; Ferrous iron transport protein B, C-terminal; SPTR: Putative uncharacterized protein; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain; ferrous iron transport protein B 885835..888102 Treponema succinifaciens DSM 2489 10430932 YP_004365063.1 CDS Tresu_0838 NC_015385.1 888345 888503 D hypothetical protein 888345..888503 Treponema succinifaciens DSM 2489 10430933 YP_004365064.1 CDS Tresu_0839 NC_015385.1 888760 890181 D COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: shi:Shel_17880 amino acid carrier protein; PFAM: Sodium:alanine symporter; SPTR: Amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein; amino acid carrier protein 888760..890181 Treponema succinifaciens DSM 2489 10430934 YP_004365065.1 CDS Tresu_0840 NC_015385.1 890294 890620 D KEGG: tde:TDE2321 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 890294..890620 Treponema succinifaciens DSM 2489 10430935 YP_004365066.1 CDS Tresu_0841 NC_015385.1 890718 891218 D COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: tde:TDE2320 RNA polymerase sigma-24 factor, ATPase AAA; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma-24 factor, ATPase AAA; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; ECF subfamily RNA polymerase sigma-24 subunit 890718..891218 Treponema succinifaciens DSM 2489 10430936 YP_004365067.1 CDS Tresu_0842 NC_015385.1 891215 891667 D KEGG: tde:TDE2319 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 891215..891667 Treponema succinifaciens DSM 2489 10430937 YP_004365068.1 CDS Tresu_0843 NC_015385.1 891688 893829 D COGs: COG1523 Type II secretory pathway pullulanase PulA and related glycosidase; InterPro IPR011837:IPR004193:IPR006047:IPR006589; KEGG: tde:TDE0101 alpha-amylase family protein; PFAM: glycoside hydrolase, family 13, N-terminal; glycosyl hydrolase, family 13, catalytic domain; PRIAM: Isoamylase; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme; PFAM: alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: glycogen debranching enzyme GlgX; glycogen debranching protein GlgX 891688..893829 Treponema succinifaciens DSM 2489 10430938 YP_004365069.1 CDS Tresu_0844 NC_015385.1 893933 896380 D COGs: COG0058 Glucan phosphorylase; InterPro IPR011833:IPR000811; KEGG: tde:TDE2411 glycogen phosphorylase; PFAM: glycosyl transferase, family 35; SPTR: phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: Carbohydrate phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; glycogen/starch/alpha-glucan phosphorylase 893933..896380 Treponema succinifaciens DSM 2489 10430939 YP_004365070.1 CDS Tresu_0845 NC_015385.1 896964 897860 D COGs: COG5006 permease DMT superfamily protein; InterPro IPR000620; KEGG: csh:Closa_1874 protein of unknown function DUF6 transmembrane; PFAM: Drug/metabolite transporter; SPTR: Putative membrane protein; PFAM: EamA-like transporter family; hypothetical protein 896964..897860 Treponema succinifaciens DSM 2489 10430940 YP_004365071.1 CDS Tresu_0846 NC_015385.1 897984 899288 D COGs: COG2067 long-chain fatty acid transport protein; InterPro IPR005017; KEGG: ipo:Ilyop_0483 membrane protein involved in aromatic hydrocarbon degradation; PFAM: Membrane protein, aromatic hydrocarbon degradation; SPTR: Membrane protein involved in aromatic hydrocarbon degradation; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); aromatic hydrocarbon degradation membrane protein 897984..899288 Treponema succinifaciens DSM 2489 10430941 YP_004365072.1 CDS Tresu_0847 NC_015385.1 899285 901252 R COGs: COG0322 Nuclease subunit of the excinuclease complex; HAMAP: Excinuclease ABC, C subunit; InterPro IPR004791:IPR000305:IPR001943:IPR001162; KEGG: tde:TDE2478 excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: UvrABC system protein C; TIGRFAM: Excinuclease ABC, C subunit; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit; UvrABC system protein C complement(899285..901252) Treponema succinifaciens DSM 2489 10430942 YP_004365073.1 CDS Tresu_0848 NC_015385.1 901256 902743 D InterPro IPR003961; KEGG: tde:TDE0446 fibronectin type III domain-containing protein; PFAM: Fibronectin, type III; SPTR: Fibronectin type III domain protein; fibronectin type III domain-containing protein 901256..902743 Treponema succinifaciens DSM 2489 10430943 YP_004365074.1 CDS Tresu_0849 NC_015385.1 902753 905416 D COGs: COG2956 N-acetylglucosaminyl transferase; InterPro IPR013105:IPR001440:IPR019734; KEGG: tde:TDE0447 TPR domain-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR domain protein; PFAM: Tetratricopeptide repeat; hypothetical protein 902753..905416 Treponema succinifaciens DSM 2489 10430944 YP_004365075.1 CDS Tresu_0850 NC_015385.1 905697 906197 D COGs: COG0041 phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: cpr:CPR_0670 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: phosphoribosylaminoimidazole carboxylase, core; PRIAM: phosphoribosylaminoimidazole carboxylase; SPTR: phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, core; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein; phosphoribosylaminoimidazole carboxylase catalytic subunit 905697..906197 Treponema succinifaciens DSM 2489 10430945 YP_004365076.1 CDS Tresu_0851 NC_015385.1 906280 907767 D COGs: COG0034 glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR005854:IPR000583:IPR000836; KEGG: ckr:CKR_2383 amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II; phosphoribosyltransferase; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; TIGRFAM: Amidophosphoribosyl transferase; PFAM: phosphoribosyl transferase domain; glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase; amidophosphoribosyltransferase 906280..907767 Treponema succinifaciens DSM 2489 10430946 YP_004365077.1 CDS Tresu_0852 NC_015385.1 908272 908517 D hypothetical protein 908272..908517 Treponema succinifaciens DSM 2489 10430947 YP_004365078.1 CDS Tresu_0853 NC_015385.1 908505 909098 R hypothetical protein complement(908505..909098) Treponema succinifaciens DSM 2489 10430948 YP_004365079.1 CDS Tresu_0855 NC_015385.1 909744 911057 R InterPro IPR011579:IPR004256; KEGG: bfr:BF2824 ATPase AAA ATPase; SPTR: Putative uncharacterized protein; PFAM: Archaeal ATPase; Archaea bacterial proteins of unknown function; ATPase complement(909744..911057) Treponema succinifaciens DSM 2489 10430950 YP_004365080.1 CDS Tresu_0856 NC_015385.1 911404 912105 R KEGG: tde:TDE2734 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(911404..912105) Treponema succinifaciens DSM 2489 10430951 YP_004365081.1 CDS Tresu_0857 NC_015385.1 912364 912600 D hypothetical protein 912364..912600 Treponema succinifaciens DSM 2489 10430952 YP_004365082.1 CDS Tresu_0858 NC_015385.1 912597 912992 D InterPro IPR000064; KEGG: ere:EUBREC_3573 peptidase, M23 family; PFAM: NLP/P60; PFAM: NlpC/P60 family; NLP/P60 protein 912597..912992 Treponema succinifaciens DSM 2489 10430953 YP_004365083.1 CDS Tresu_0859 NC_015385.1 912989 913411 D hypothetical protein 912989..913411 Treponema succinifaciens DSM 2489 10430954 YP_004365084.1 CDS Tresu_0860 NC_015385.1 913706 914182 D COGs: COG3666 Transposase and inactivated derivatives; KEGG: cki:Calkr_2036 transposase IS4 family protein; SPTR: Transposase, IS4 family; PFAM: Transposase domain (DUF772); transposase IS4 family protein 913706..914182 Treponema succinifaciens DSM 2489 10430955 YP_004365085.1 CDS Tresu_0862 NC_015385.1 914617 915015 R COGs: COG0295 Cytidine deaminase; InterPro IPR002125; KEGG: lhe:lhv_1123 cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; CMP/dCMP deaminase zinc-binding protein complement(914617..915015) Treponema succinifaciens DSM 2489 10430957 YP_004365086.1 CDS Tresu_0863 NC_015385.1 915030 915206 R hypothetical protein complement(915030..915206) Treponema succinifaciens DSM 2489 10430958 YP_004365087.1 CDS Tresu_0864 NC_015385.1 915363 916295 R COGs: COG1079 ABC-type transport system permease component; InterPro IPR001851; KEGG: tde:TDE1947 ABC transporter, permease protein; PFAM: ABC transporter permease; SPTR: ABC transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component; ABC transporter permease complement(915363..916295) Treponema succinifaciens DSM 2489 10430959 YP_004365088.1 CDS Tresu_0865 NC_015385.1 916292 917434 R COGs: COG4603 ABC transporter permease component; InterPro IPR001851; KEGG: tde:TDE1948 ABC transporter, permease protein; PFAM: ABC transporter permease; SPTR: ABC transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component; ABC transporter permease complement(916292..917434) Treponema succinifaciens DSM 2489 10430960 YP_004365089.1 CDS Tresu_0866 NC_015385.1 917425 918951 R COGs: COG3845 ABC transporter s ATPase components; InterPro IPR003439:IPR003593; KEGG: tde:TDE1949 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: sugar ABC transporter ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter; sugar ABC transporter ATPase complement(917425..918951) Treponema succinifaciens DSM 2489 10430961 YP_004365090.1 CDS Tresu_0867 NC_015385.1 919068 920147 R COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR003760; KEGG: tde:TDE1950 membrane lipoprotein TmpC, ATPase AAA; PFAM: Basic membrane lipoprotein; SPTR: Membrane lipoprotein TmpC, ATPase AAA; PFAM: Basic membrane protein; basic membrane lipoprotein complement(919068..920147) Treponema succinifaciens DSM 2489 10430962 YP_004365091.1 CDS Tresu_0868 NC_015385.1 920656 921357 R InterPro IPR001584; KEGG: cph:Cpha266_1645 integrase catalytic subunit; PFAM: Integrase, catalytic core; SPTR: Integrase, catalytic region; PFAM: Integrase core domain; integrase catalytic subunit complement(920656..921357) Treponema succinifaciens DSM 2489 10430963 YP_004365092.1 CDS Tresu_0869 NC_015385.1 921411 922328 D hypothetical protein 921411..922328 Treponema succinifaciens DSM 2489 10430964 YP_004365093.1 CDS Tresu_0872 NC_015385.1 923390 924586 R COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bvu:BVU_0570 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(923390..924586) Treponema succinifaciens DSM 2489 10430967 YP_004365094.1 CDS Tresu_0873 NC_015385.1 924848 926305 D COGs: COG1373 ATPase (AAA+ superfamily); KEGG: blb:BBMN68_1015 ATPase AAA; SPTR: Putative uncharacterized protein; ATPase AAA 924848..926305 Treponema succinifaciens DSM 2489 10430968 YP_004365095.1 CDS Tresu_0874 NC_015385.1 926527 927393 D COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: tde:TDE2269 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: Putative uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme; sulfatase-modifying factor protein 926527..927393 Treponema succinifaciens DSM 2489 10430969 YP_004365096.1 CDS Tresu_0875 NC_015385.1 927709 928353 D hypothetical protein 927709..928353 Treponema succinifaciens DSM 2489 10430970 YP_004365097.1 CDS Tresu_0876 NC_015385.1 928457 929602 R COGs: COG1373 ATPase (AAA+ superfamily); KEGG: dfe:Dfer_3078 hypothetical protein; SPTR: Putative ATPase; PFAM: ATPase family associated with various cellular activities (AAA); hypothetical protein complement(928457..929602) Treponema succinifaciens DSM 2489 10430971 YP_004365098.1 CDS Tresu_0877 NC_015385.1 929725 930480 R InterPro IPR010488; KEGG: ecr:ECIAI1_4248 ATPase AAA zeta toxin; poison-antidote element; PFAM: Zeta toxin; SPTR: Putative zeta toxin; poison-antidote element; PFAM: Zeta toxin; Zeta toxin family protein complement(929725..930480) Treponema succinifaciens DSM 2489 10430972 YP_004365099.1 CDS Tresu_0878 NC_015385.1 930483 930686 R hypothetical protein complement(930483..930686) Treponema succinifaciens DSM 2489 10430973 YP_004365100.1 CDS Tresu_0879 NC_015385.1 930942 932051 D COGs: COG0150 phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR004733:IPR000728:IPR010918; KEGG: cbi:CLJ_B3130 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; PRIAM: phosphoribosylformylglycinamidine cyclo-ligase; SPTR: phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase; phosphoribosylformylglycinamidine cyclo-ligase 930942..932051 Treponema succinifaciens DSM 2489 10430974 YP_004365101.1 CDS Tresu_0880 NC_015385.1 932044 932670 D COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR004607:IPR002376; KEGG: sta:STHERM_c12550 hypothetical protein; PFAM: Formyl transferase, N-terminal; PRIAM: phosphoribosylglycinamide formyltransferase; SPTR: Putative uncharacterized protein; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; phosphoribosylglycinamide formyltransferase 932044..932670 Treponema succinifaciens DSM 2489 10430975 YP_004365102.1 CDS Tresu_0881 NC_015385.1 932667 933383 R COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594; KEGG: cpy:Cphy_3486 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; PFAM: ThiF family; UBA/THIF-type NAD/FAD binding protein complement(932667..933383) Treponema succinifaciens DSM 2489 10430976 YP_004365103.1 CDS Tresu_0882 NC_015385.1 933385 934857 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: tde:TDE2148 OmpA family protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA family protein; PFAM: OmpA family; OmpA/MotB domain-containing protein complement(933385..934857) Treponema succinifaciens DSM 2489 10430977 YP_004365104.1 CDS Tresu_0883 NC_015385.1 935366 937414 D COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: tde:TDE2142 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; SPTR: methyl-accepting chemotaxis protein; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer 935366..937414 Treponema succinifaciens DSM 2489 10430978 YP_004365105.1 CDS Tresu_0884 NC_015385.1 937647 937898 D InterPro IPR005899; PFAM: Sodium ion-translocating decarboxylase; PFAM: Oxaloacetate decarboxylase, gamma chain; TIGRFAM: sodium pump decarboxylases, gamma subunit; sodium pump decarboxylase gamma subunit 937647..937898 Treponema succinifaciens DSM 2489 10430979 YP_004365106.1 CDS Tresu_0885 NC_015385.1 937927 939993 D COGs: COG5016 Pyruvate/oxaloacetate carboxyltransferase; InterPro IPR005776:IPR000891:IPR003379:IPR000089; KEGG: tpp:TPASS_0056 pyruvate carboxylase subunit B; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase; Biotin/lipoyl attachment; PRIAM: methylmalonyl-CoA carboxytransferase; SPTR: Oxaloacetate decarboxylase alpha subunit; TIGRFAM: Oxaloacetate decarboxylase, alpha subunit; PFAM: HMGL-like; Conserved carboxylase domain; Biotin-requiring enzyme; TIGRFAM: oxaloacetate decarboxylase alpha subunit; oxaloacetate decarboxylase subunit alpha 937927..939993 Treponema succinifaciens DSM 2489 10430980 YP_004365107.1 CDS Tresu_0886 NC_015385.1 940046 941473 D COGs: COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; InterPro IPR005661; KEGG: tpp:TPASS_0057 oxaloacetate decarboxylase, subunit beta; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; PRIAM: Oxaloacetate decarboxylase; SPTR: Oxaloacetate decarboxylase, subunit beta (OadB); TIGRFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; PFAM: subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta 940046..941473 Treponema succinifaciens DSM 2489 10430981 YP_004365108.1 CDS Tresu_0887 NC_015385.1 941541 941882 D hypothetical protein 941541..941882 Treponema succinifaciens DSM 2489 10430982 YP_004365109.1 CDS Tresu_0888 NC_015385.1 941953 942348 D hypothetical protein 941953..942348 Treponema succinifaciens DSM 2489 10430983 YP_004365110.1 CDS Tresu_0889 NC_015385.1 942795 943925 R COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: ssb:SSUBM407_0724 transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: ISCps8, transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein complement(942795..943925) Treponema succinifaciens DSM 2489 10430984 YP_004365111.1 CDS Tresu_0890 NC_015385.1 944034 944876 R KEGG: vfi:VF_1640 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(944034..944876) Treponema succinifaciens DSM 2489 10430985 YP_004365112.1 CDS Tresu_0891 NC_015385.1 945089 945403 D COGs: COG0261 ribosomal protein L21; HAMAP: ribosomal protein L21; InterPro IPR001787; KEGG: tde:TDE1751 50S ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21; 50S ribosomal protein L21 945089..945403 Treponema succinifaciens DSM 2489 10430986 YP_004365113.1 CDS Tresu_0892 NC_015385.1 945404 945736 D COGs: COG2868 ribosomal protein; InterPro IPR007422; KEGG: aar:Acear_0569 protein of unknown function DUF464; PFAM: protein of unknown function DUF464; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF464); hypothetical protein 945404..945736 Treponema succinifaciens DSM 2489 10430987 YP_004365114.1 CDS Tresu_0893 NC_015385.1 945767 946027 D COGs: COG0211 ribosomal protein L27; HAMAP: ribosomal protein L27; InterPro IPR001684; KEGG: tpp:TPASS_0743 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal L27 protein; TIGRFAM: ribosomal protein L27; 50S ribosomal protein L27 945767..946027 Treponema succinifaciens DSM 2489 10430988 YP_004365115.1 CDS Tresu_0894 NC_015385.1 946129 947250 D COGs: COG0536 GTPase; HAMAP: GTP-binding protein Obg/CgtA; InterPro IPR014100:IPR006169:IPR002917; KEGG: tde:TDE1748 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain; GTPase obg 946129..947250 Treponema succinifaciens DSM 2489 10430989 YP_004365116.1 CDS Tresu_0895 NC_015385.1 947253 947909 D COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; InterPro IPR004821:IPR005248:IPR004820; KEGG: bga:BG0806 hypothetical protein; PFAM: Cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain; nicotinate-nucleotide adenylyltransferase 947253..947909 Treponema succinifaciens DSM 2489 10430990 YP_004365117.1 CDS Tresu_0896 NC_015385.1 947893 948501 D COGs: COG1713 HD superfamily hydrolase involved in NAD metabolism; InterPro IPR005249:IPR006674:IPR003607; KEGG: tde:TDE1747 ATPase AAA nicotinate-nucleotide adenylyltransferase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Nicotinate (Nicotinamide) nucleotide adenylyltransferase; TIGRFAM: Conserved hypothetical protein CHP00488; PFAM: HD domain; TIGRFAM: ATPase AAA HD superfamily hydrolase of NAD metabolism; metal dependent phosphohydrolase 947893..948501 Treponema succinifaciens DSM 2489 10430991 YP_004365118.1 CDS Tresu_0897 NC_015385.1 948520 949740 D COGs: COG1316 Transcriptional regulator; KEGG: tde:TDE1746 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Cell envelope-related transcriptional attenuator domain; hypothetical protein 948520..949740 Treponema succinifaciens DSM 2489 10430992 YP_004365119.1 CDS Tresu_0898 NC_015385.1 949747 950094 D COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: tde:TDE1745 hypothetical protein; PFAM: ribosome-associated, Iojap-like; SPTR: Putative uncharacterized protein; TIGRFAM: ribosome-associated, Iojap-like; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein; iojap family protein 949747..950094 Treponema succinifaciens DSM 2489 10430993 YP_004365120.1 CDS Tresu_0899 NC_015385.1 950099 951088 R InterPro IPR008258; KEGG: ssm:Spirs_2858 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Lytic transglycosylase catalytic; PFAM: Transglycosylase SLT domain; Lytic transglycosylase catalytic complement(950099..951088) Treponema succinifaciens DSM 2489 10430994 YP_004365121.1 CDS Tresu_0900 NC_015385.1 951088 952152 R KEGG: tde:TDE2150 hypothetical protein; SPTR: Tetratricopeptide repeat domain protein; hypothetical protein complement(951088..952152) Treponema succinifaciens DSM 2489 10430995 YP_004365122.1 CDS Tresu_0901 NC_015385.1 952276 952722 D hypothetical protein 952276..952722 Treponema succinifaciens DSM 2489 10430996 YP_004365123.1 CDS Tresu_0902 NC_015385.1 952709 954520 D KEGG: tde:TDE1053 ATPase AAA lipoprotein; SPTR: lipoprotein, ATPase AAA; lipoprotein 952709..954520 Treponema succinifaciens DSM 2489 10430997 YP_004365124.1 CDS Tresu_0903 NC_015385.1 954675 955100 D COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: tde:TDE0682 preprotein translocase, YajC subunit; PFAM: Preprotein translocase YajC; SPTR: Preprotein translocase, YajC subunit; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit; preprotein translocase subunit YajC 954675..955100 Treponema succinifaciens DSM 2489 10430998 YP_004365125.1 CDS Tresu_0904 NC_015385.1 955093 956829 D COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR005791:IPR022645:IPR022646:IPR022813; KEGG: tde:TDE0681 preprotein translocase subunit SecD; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal; SPTR: protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD 955093..956829 Treponema succinifaciens DSM 2489 10430999 YP_004365126.1 CDS Tresu_0905 NC_015385.1 956829 958079 D COGs: COG0341 Preprotein translocase subunit SecF; InterPro IPR005665:IPR022645:IPR022813; KEGG: tde:TDE0680 preprotein translocase subunit SecF; PFAM: Preprotein translocase, SecD/SecF/SecDF; SPTR: protein-export membrane protein SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: protein export membrane protein; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; protein-export membrane protein SecF 956829..958079 Treponema succinifaciens DSM 2489 10431000 YP_004365127.1 CDS Tresu_0906 NC_015385.1 958213 959067 D COGs: COG0761 Penicillin tolerance protein; HAMAP: LytB protein; InterPro IPR003451; KEGG: tde:TDE1096 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: LytB protein; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming); 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 958213..959067 Treponema succinifaciens DSM 2489 10431001 YP_004365128.1 CDS Tresu_0907 NC_015385.1 959131 960201 D KEGG: tde:TDE2028 OmpA family protein; SPTR: OmpA family protein; hypothetical protein 959131..960201 Treponema succinifaciens DSM 2489 10431002 YP_004365129.1 CDS Tresu_0908 NC_015385.1 960205 963366 D COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: tde:TDE2028 OmpA family protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA family protein; PFAM: OmpA family; OmpA/MotB domain-containing protein 960205..963366 Treponema succinifaciens DSM 2489 10431003 YP_004365130.1 CDS Tresu_0909 NC_015385.1 963483 965282 R COGs: COG1164 Oligoendopeptidase F; InterPro IPR004438:IPR013647:IPR001567; KEGG: tde:TDE2639 oligoendopeptidase F; PFAM: peptidase M3A/M3B, thimet/oligopeptidase F; peptidase M3B, oligopeptidase F, N-terminal; SPTR: Oligoendopeptidase F; TIGRFAM: peptidase M3B, oligoendopeptidase F; PFAM: Oligopeptidase F; peptidase family M3; TIGRFAM: oligoendopeptidase F; oligoendopeptidase F complement(963483..965282) Treponema succinifaciens DSM 2489 10431004 YP_004365131.1 CDS Tresu_0910 NC_015385.1 965341 966693 D KEGG: tde:TDE1404 ATPase AAA lipoprotein; SPTR: Putative lipoprotein; lipoprotein 965341..966693 Treponema succinifaciens DSM 2489 10431005 YP_004365132.1 CDS Tresu_0911 NC_015385.1 966766 968700 D COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: tde:TDE1403 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter; ABC transporter 966766..968700 Treponema succinifaciens DSM 2489 10431006 YP_004365133.1 CDS Tresu_0912 NC_015385.1 968804 969784 D COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR005886:IPR001509; KEGG: cte:CT0024 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase; UDP-glucose 4-epimerase 968804..969784 Treponema succinifaciens DSM 2489 10431007 YP_004365134.1 CDS Tresu_0913 NC_015385.1 969861 971090 D COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR010182:IPR002933:IPR011650; KEGG: tde:TDE0068 diaminopimelate aminotransferase; PFAM: peptidase M20; peptidase M20, dimerisation; SPTR: peptidase, M20/M25/M40 family; TIGRFAM: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase 969861..971090 Treponema succinifaciens DSM 2489 10431008 YP_004365135.1 CDS Tresu_0914 NC_015385.1 971093 971890 R InterPro IPR000182; KEGG: ppn:Palpr_1598 gcn5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family; GCN5-related N-acetyltransferase complement(971093..971890) Treponema succinifaciens DSM 2489 10431009 YP_004365136.1 CDS Tresu_0915 NC_015385.1 972022 972798 D hypothetical protein 972022..972798 Treponema succinifaciens DSM 2489 10431010 YP_004365137.1 CDS Tresu_0916 NC_015385.1 978206 978403 D hypothetical protein 978206..978403 Treponema succinifaciens DSM 2489 10431015 YP_004365138.1 CDS Tresu_0917 NC_015385.1 978417 980108 R COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR001789; KEGG: bpb:bpr_I0854 two component system histidine kinase/response regulator hybrid protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: Two component system histidine kinase/response regulator hybrid protein; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Hpt domain; histidine kinase complement(978417..980108) Treponema succinifaciens DSM 2489 10431016 YP_004365139.1 CDS Tresu_0918 NC_015385.1 980167 980811 R hypothetical protein complement(980167..980811) Treponema succinifaciens DSM 2489 10431017 YP_004365140.1 CDS Tresu_0919 NC_015385.1 980798 981595 R COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: bpb:bpr_I1049 response regulator domain-containing protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator domain-containing protein; PFAM: Response regulator receiver domain; response regulator receiver protein complement(980798..981595) Treponema succinifaciens DSM 2489 10431018 YP_004365141.1 CDS Tresu_0920 NC_015385.1 981708 982838 R COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein complement(981708..982838) Treponema succinifaciens DSM 2489 10431019 YP_004365142.1 CDS Tresu_0921 NC_015385.1 983203 984240 D COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959:IPR003593; KEGG: mmy:MSC_1062 ATPase AAA family protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: ATPase AAA; PFAM: ATPase family associated with various cellular activities (AAA); ATPase AAA central domain-containing protein 983203..984240 Treponema succinifaciens DSM 2489 10431020 YP_004365143.1 CDS Tresu_0922 NC_015385.1 984244 986460 D KEGG: lwe:lwe0773 ATPase AAA; SPTR: Putative uncharacterized protein; PFAM: Subtilase family; ATPase AAA 984244..986460 Treponema succinifaciens DSM 2489 10431021 YP_004365144.1 CDS Tresu_0923 NC_015385.1 986564 987220 R hypothetical protein complement(986564..987220) Treponema succinifaciens DSM 2489 10431022 YP_004365145.1 CDS Tresu_0924 NC_015385.1 987228 988334 R COGs: COG3093 Plasmid maintenance system antidote protein; InterPro IPR013430:IPR001387:IPR010359; KEGG: kol:Kole_1307 XRE family plasmid maintenance system antidote protein; PFAM: Helix-turn-helix type 3; protein of unknown function DUF955; SMART: Helix-turn-helix type 3; SPTR: Plasmid maintenance system antidote protein, XRE family; TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix; Domain of unknown function (DUF955); TIGRFAM: addiction module antidote protein, HigA family; XRE family transcriptional regulator complement(987228..988334) Treponema succinifaciens DSM 2489 10431023 YP_004365146.1 CDS Tresu_0925 NC_015385.1 988339 988650 R COGs: COG3549 Plasmid maintenance system killer protein; InterPro IPR007711; KEGG: kol:Kole_1308 plasmid maintenance system killer; PFAM: Plasmid maintenance system killer; SPTR: Plasmid maintenance system killer; PFAM: Plasmid maintenance system killer protein; plasmid maintenance system killer protein complement(988339..988650) Treponema succinifaciens DSM 2489 10431024 YP_004365147.1 CDS Tresu_0926 NC_015385.1 988822 989385 D COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409; KEGG: clo:HMPREF0868_0494 HsdR family type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Restriction endonuclease, type I, EcoRI, R subunit/Type III 988822..989385 Treponema succinifaciens DSM 2489 10431025 YP_004365148.1 CDS Tresu_0927 NC_015385.1 989429 989593 R hypothetical protein complement(989429..989593) Treponema succinifaciens DSM 2489 10431026 YP_004365149.1 CDS Tresu_0930 NC_015385.1 992768 993172 D InterPro IPR001387; KEGG: fsu:Fisuc_2499 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Toxin-antitoxin system, antitoxin component, Xre family; PFAM: Helix-turn-helix; hypothetical protein 992768..993172 Treponema succinifaciens DSM 2489 10431029 YP_004365150.1 CDS Tresu_0931 NC_015385.1 993153 993818 D hypothetical protein 993153..993818 Treponema succinifaciens DSM 2489 10431030 YP_004365151.1 CDS Tresu_0932 NC_015385.1 994113 994871 D hypothetical protein 994113..994871 Treponema succinifaciens DSM 2489 10431031 YP_004365152.1 CDS Tresu_0933 NC_015385.1 995099 996655 D COGs: COG1621 beta-fructosidase (levanase/invertase); InterPro IPR013148:IPR013189:IPR001362; KEGG: cbe:Cbei_3877 sucrose-6-phosphate hydrolase; PFAM: glycosyl hydrolases family 32, N-terminal; glycosyl hydrolase family 32, C-terminal; SMART: glycoside hydrolase, family 32; SPTR: Sucrose-6-phosphate hydrolase; PFAM: glycosyl hydrolases family 32 C terminal; glycosyl hydrolases family 32 N-terminal domain; glycosyl hydrolase family 32 domain protein 995099..996655 Treponema succinifaciens DSM 2489 10431032 YP_004365153.1 CDS Tresu_0934 NC_015385.1 996674 997657 D COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: ere:EUBREC_0258 PfkB-type carbohydrate kinase family protein; PFAM: Carbohydrate/purine kinase; PRIAM: Fructokinase; SPTR: Sugar kinases, ribokinase family; PFAM: pfkB family carbohydrate kinase; fructokinase 996674..997657 Treponema succinifaciens DSM 2489 10431033 YP_004365154.1 CDS Tresu_0935 NC_015385.1 997794 998486 D hypothetical protein 997794..998486 Treponema succinifaciens DSM 2489 10431034 YP_004365155.1 CDS Tresu_0936 NC_015385.1 998505 998996 R COGs: COG1528 Ferritin-like protein; InterPro IPR008331; KEGG: tde:TDE0449 ferritin, ATPase AAA; PFAM: Ferritin/Dps protein; SPTR: Putative uncharacterized protein; PFAM: Ferritin-like domain; ferritin Dps family protein complement(998505..998996) Treponema succinifaciens DSM 2489 10431035 YP_004365156.1 CDS Tresu_0937 NC_015385.1 999015 999395 R COGs: COG2033 Desulfoferrodoxin; InterPro IPR002742; KEGG: afn:Acfer_1201 desulfoferrodoxin ferrous iron-binding region; PFAM: Desulfoferrodoxin, ferrous iron-binding domain; SPTR: Desulfoferrodoxin ferrous iron-binding region; PFAM: Desulfoferrodoxin, N-terminal domain; Desulfoferrodoxin; TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain; desulfoferrodoxin; desulfoferrodoxin ferrous iron-binding domain; desulfoferrodoxin ferrous iron-binding region complement(999015..999395) Treponema succinifaciens DSM 2489 10431036 YP_004365157.1 CDS Tresu_0940 NC_015385.1 1002452 1002661 D hypothetical protein 1002452..1002661 Treponema succinifaciens DSM 2489 10431039 YP_004365158.1 CDS Tresu_0941 NC_015385.1 1002842 1005043 D KEGG: mmq:MmarC5_1268 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1002842..1005043 Treponema succinifaciens DSM 2489 10431040 YP_004365159.1 CDS Tresu_0942 NC_015385.1 1005047 1006564 D KEGG: dfe:Dfer_0062 polysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; PFAM: MatE; polysaccharide biosynthesis protein 1005047..1006564 Treponema succinifaciens DSM 2489 10431041 YP_004365160.1 CDS Tresu_0943 NC_015385.1 1006566 1007465 D hypothetical protein 1006566..1007465 Treponema succinifaciens DSM 2489 10431042 YP_004365161.1 CDS Tresu_0944 NC_015385.1 1007462 1008487 D KEGG: cpy:Cphy_0298 hypothetical protein; SPTR: polysaccharide pyruvyl transferase; PFAM: polysaccharide pyruvyl transferase; hypothetical protein 1007462..1008487 Treponema succinifaciens DSM 2489 10431043 YP_004365162.1 CDS Tresu_0945 NC_015385.1 1008484 1009722 D COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit; InterPro IPR001450; KEGG: bvu:BVU_2392 F420H2-dehydrogenase, beta subunit; PFAM: 4Fe-4S binding domain; SPTR: Coenzyme F420-reducing hydrogenase, beta subunit; PFAM: 4Fe-4S binding domain; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1008484..1009722 Treponema succinifaciens DSM 2489 10431044 YP_004365163.1 CDS Tresu_0946 NC_015385.1 1009719 1010657 D InterPro IPR002509; KEGG: ppn:Palpr_1138 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: polysaccharide deacetylase; PFAM: polysaccharide deacetylase; polysaccharide deacetylase 1009719..1010657 Treponema succinifaciens DSM 2489 10431045 YP_004365164.1 CDS Tresu_0947 NC_015385.1 1010669 1011760 D COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: tra:Trad_2725 glycosyl transferase group 1 protein; PFAM: glycosyl transferase, group 1; SPTR: glycosyltransferase, group 1 family protein; PFAM: glycosyl transferases group 1; group 1 glycosyl transferase 1010669..1011760 Treponema succinifaciens DSM 2489 10431046 YP_004365165.1 CDS Tresu_0948 NC_015385.1 1011757 1012743 D KEGG: cts:Ctha_2070 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1011757..1012743 Treponema succinifaciens DSM 2489 10431047 YP_004365166.1 CDS Tresu_0949 NC_015385.1 1012743 1013528 D KEGG: pfl:PFL_5102 glycosyltransferase, ATPase AAA; SPTR: glycosyl transferase; PFAM: glycosyl transferase family 2; glycosyltransferase 1012743..1013528 Treponema succinifaciens DSM 2489 10431048 YP_004365167.1 CDS Tresu_0950 NC_015385.1 1013530 1014612 D COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_2891 A-glycosyltransferase; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1; group 1 glycosyl transferase 1013530..1014612 Treponema succinifaciens DSM 2489 10431049 YP_004365168.1 CDS Tresu_0951 NC_015385.1 1014957 1015232 D KEGG: pru:PRU_1734 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1014957..1015232 Treponema succinifaciens DSM 2489 10431050 YP_004365169.1 CDS Tresu_0952 NC_015385.1 1015225 1015446 D KEGG: pru:PRU_1733 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1015225..1015446 Treponema succinifaciens DSM 2489 10431051 YP_004365170.1 CDS Tresu_0953 NC_015385.1 1015449 1015730 D SPTR: Putative uncharacterized protein; hypothetical protein 1015449..1015730 Treponema succinifaciens DSM 2489 10431052 YP_004365171.1 CDS Tresu_0954 NC_015385.1 1015797 1016939 D COGs: COG0438 glycosyltransferase; InterPro IPR015393:IPR001296; KEGG: pdi:BDI_1406 glycosyl transferase family protein; PFAM: Domain of unknown function DUF1972; glycosyl transferase, group 1; SPTR: Putative uncharacterized protein; PFAM: glycosyl transferases group 1; Domain of unknown function (DUF1972); hypothetical protein 1015797..1016939 Treponema succinifaciens DSM 2489 10431053 YP_004365172.1 CDS Tresu_0955 NC_015385.1 1017033 1019051 D KEGG: fps:FP1531 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1017033..1019051 Treponema succinifaciens DSM 2489 10431054 YP_004365173.1 CDS Tresu_0956 NC_015385.1 1019059 1020114 D InterPro IPR003615; KEGG: sun:SUN_2263 hypothetical protein; SMART: HNH nuclease; SPTR: Putative uncharacterized protein; HNH nuclease 1019059..1020114 Treponema succinifaciens DSM 2489 10431055 YP_004365174.1 CDS Tresu_0957 NC_015385.1 1020221 1020751 R KEGG: ssm:Spirs_4277 transcriptional regulator, MarR family; SPTR: Transcriptional regulator, MarR family; hypothetical protein complement(1020221..1020751) Treponema succinifaciens DSM 2489 10431056 YP_004365175.1 CDS Tresu_0958 NC_015385.1 1020838 1020987 R hypothetical protein complement(1020838..1020987) Treponema succinifaciens DSM 2489 10431057 YP_004365176.1 CDS Tresu_0959 NC_015385.1 1021406 1022152 D InterPro IPR003744; KEGG: ahe:Arch_1134 hypothetical protein; PFAM: protein of unknown function DUF165; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized ACR, YhhQ family COG1738; hypothetical protein 1021406..1022152 Treponema succinifaciens DSM 2489 10431058 YP_004365177.1 CDS Tresu_0960 NC_015385.1 1022149 1022838 D COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: efa:EF2881 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Putative uncharacterized protein; PFAM: short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1022149..1022838 Treponema succinifaciens DSM 2489 10431059 YP_004365178.1 CDS Tresu_0961 NC_015385.1 1022934 1023854 D KEGG: sta:STHERM_c11560 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1022934..1023854 Treponema succinifaciens DSM 2489 10431060 YP_004365179.1 CDS Tresu_0962 NC_015385.1 1023871 1025967 R COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR001450:IPR007202; KEGG: ssm:Spirs_3433 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; 4Fe-4S binding domain; Putative Fe-S cluster; SMART: Chemotaxis methyl-accepting receptor, signalling; SPTR: methyl-accepting chemotaxis sensory transducer; PFAM: Iron only hydrogenase large subunit, C-terminal domain; Putative Fe-S cluster; methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer complement(1023871..1025967) Treponema succinifaciens DSM 2489 10431061 YP_004365180.1 CDS Tresu_0963 NC_015385.1 1026154 1027425 D COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); HAMAP: arginine biosynthesis protein ArgJ; InterPro IPR002813; KEGG: cbe:Cbei_4518 arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; PRIAM: Amino-acid N-acetyltransferase; SPTR: arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis protein ArgJ; PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase; arginine biosynthesis bifunctional protein ArgJ 1026154..1027425 Treponema succinifaciens DSM 2489 10431062 YP_004365181.1 CDS Tresu_0964 NC_015385.1 1027443 1028345 D COGs: COG0548 Acetylglutamate kinase; InterPro IPR004662:IPR001048; KEGG: mta:Moth_2288 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: Acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase; acetylglutamate kinase 1027443..1028345 Treponema succinifaciens DSM 2489 10431063 YP_004365182.1 CDS Tresu_0965 NC_015385.1 1028354 1029511 D COGs: COG4992 ornithine/acetylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; InterPro IPR004636:IPR005814; KEGG: ssm:Spirs_2235 acetylornithine and succinylornithine aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Putative uncharacterized protein; TIGRFAM: Acetylornithine/succinylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases; Acetylornithine/succinyldiaminopimelate aminotransferase 1028354..1029511 Treponema succinifaciens DSM 2489 10431064 YP_004365183.1 CDS Tresu_0966 NC_015385.1 1029625 1031346 D KEGG: tpp:TPASS_0110 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1029625..1031346 Treponema succinifaciens DSM 2489 10431065 YP_004365184.1 CDS Tresu_0967 NC_015385.1 1031343 1032119 D COGs: COG1496 conserved hypothetical protein; InterPro IPR003730; KEGG: ssm:Spirs_1800 protein of unknown function DUF152; PFAM: Multi-copper polyphenol oxidoreductase, laccase; SPTR: Putative uncharacterized protein; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family; multi-copper polyphenol oxidoreductase, laccase 1031343..1032119 Treponema succinifaciens DSM 2489 10431066 YP_004365185.1 CDS Tresu_0968 NC_015385.1 1032233 1033597 D COGs: COG0137 argininosuccinate synthase; HAMAP: argininosuccinate synthase; InterPro IPR001518; KEGG: bhy:BHWA1_01491 argininosuccinate lyase; PFAM: argininosuccinate synthase; PRIAM: argininosuccinate synthase; SPTR: argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; argininosuccinate synthase 1032233..1033597 Treponema succinifaciens DSM 2489 10431067 YP_004365186.1 CDS Tresu_0969 NC_015385.1 1034136 1034885 D COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652; KEGG: tde:TDE1236 triosephosphate isomerase; PFAM: Triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; triosephosphate isomerase 1034136..1034885 Treponema succinifaciens DSM 2489 10431068 YP_004365187.1 CDS Tresu_0970 NC_015385.1 1034983 1035555 D COGs: COG2059 chromate transport protein ChrA; InterPro IPR003370; KEGG: tde:TDE1744 chromate transport protein; PFAM: chromate transporter; SPTR: chromate transport protein; PFAM: chromate transporter; chromate transporter 1034983..1035555 Treponema succinifaciens DSM 2489 10431069 YP_004365188.1 CDS Tresu_0971 NC_015385.1 1035552 1036115 D COGs: COG2059 chromate transport protein ChrA; InterPro IPR003370; KEGG: tde:TDE1743 chromate transport protein; PFAM: chromate transporter; SPTR: chromate transport protein; PFAM: chromate transporter; chromate transporter 1035552..1036115 Treponema succinifaciens DSM 2489 10431070 YP_004365189.1 CDS Tresu_0972 NC_015385.1 1036116 1037450 D COGs: COG3894 Uncharacterized metal-binding protein; KEGG: tmt:Tmath_1046 vitamin B12 dependent methionine synthase activation region; SPTR: Vitamin B12 dependent methionine synthase activation region; vitamin B12 dependent methionine synthase activation region 1036116..1037450 Treponema succinifaciens DSM 2489 10431071 YP_004365190.1 CDS Tresu_0973 NC_015385.1 1037522 1038607 D COGs: COG0216 protein chain release factor A; HAMAP: peptide chain release factor 1; InterPro IPR004373:IPR005139:IPR000352; KEGG: tde:TDE2489 peptide chain release factor 1; PFAM: peptide chain release factor class I/class II; peptide chain release factor; SMART: peptide chain release factor; SPTR: peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1; peptide chain release factor 1 1037522..1038607 Treponema succinifaciens DSM 2489 10431072 YP_004365191.1 CDS Tresu_0974 NC_015385.1 1038616 1039548 D COGs: COG2890 methylase of polypeptide chain release factors; InterPro IPR004556:IPR019874:IPR007848; KEGG: tde:TDE2488 HemK family modification methylase; PFAM: methyltransferase small; SPTR: protein-(glutamine-N5) methyltransferase, release factor-specific; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: methyltransferase small domain; TIGRFAM: HemK family ATPase AAA methylases; protein-(glutamine-N5) methyltransferase, release factor-specific; protein-(glutamine-N5) methyltransferase 1038616..1039548 Treponema succinifaciens DSM 2489 10431073 YP_004365192.1 CDS Tresu_0975 NC_015385.1 1039526 1040815 D COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: ssp:SSP1147 ATPase AAA O-methyltransferase; PFAM: O-methyltransferase, family 3; SPTR: O-methyltransferase family protein; PFAM: O-methyltransferase; O-methyltransferase family protein 1039526..1040815 Treponema succinifaciens DSM 2489 10431074 YP_004365193.1 CDS Tresu_0976 NC_015385.1 1040812 1041957 R COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: vpr:Vpar_1772 lactaldehyde reductase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: lactaldehyde reductase; SPTR: Putative uncharacterized protein; PFAM: Iron-containing alcohol dehydrogenase; lactaldehyde reductase complement(1040812..1041957) Treponema succinifaciens DSM 2489 10431075 YP_004365194.1 CDS Tresu_0977 NC_015385.1 1042102 1043034 D COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127; KEGG: cce:Ccel_1156 periplasmic solute binding protein; PFAM: ABC transporter metal-binding lipoprotein; SPTR: Putative adhesion lipoprotein; PFAM: Periplasmic solute binding protein family; heavy metal ABC transporter substrate-binding protein 1042102..1043034 Treponema succinifaciens DSM 2489 10431076 YP_004365195.1 CDS Tresu_0978 NC_015385.1 1043034 1043855 D COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: cce:Ccel_3414 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter; ABC transporter 1043034..1043855 Treponema succinifaciens DSM 2489 10431077 YP_004365196.1 CDS Tresu_0979 NC_015385.1 1043873 1044718 D COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: dae:Dtox_0335 ABC-3 protein; PFAM: ABC-3; SPTR: Putative cation ABC transporter, permease protein; PFAM: ABC 3 transport family; ABC transporter permease 1043873..1044718 Treponema succinifaciens DSM 2489 10431078 YP_004365197.1 CDS Tresu_0980 NC_015385.1 1044720 1045367 D COGs: COG0546 phosphatase; InterPro IPR006402:IPR006439:IPR005834; KEGG: ere:EUBREC_0355 ATPase AAA phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; PRIAM: phosphoglycolate phosphatase; SPTR: Putative uncharacterized protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD-superfamily hydrolase 1044720..1045367 Treponema succinifaciens DSM 2489 10431079 YP_004365198.1 CDS Tresu_0981 NC_015385.1 1045364 1047943 D COGs: COG1193 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 2; InterPro IPR000432:IPR002625:IPR005747; KEGG: tde:TDE1450 MutS2 family protein; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; Smr protein/MutS2 C-terminal; SPTR: MutS2 protein; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein; MutS2 protein 1045364..1047943 Treponema succinifaciens DSM 2489 10431080 YP_004365199.1 CDS Tresu_0982 NC_015385.1 1047940 1048461 R COGs: COG1438 arginine repressor; HAMAP: arginine repressor; InterPro IPR001669:IPR020900:IPR020899; KEGG: ssm:Spirs_3243 arginine repressor, ArgR; PFAM: arginine repressor, DNA-binding domain; arginine repressor, C-terminal; SPTR: arginine repressor; manually curated; PFAM: arginine repressor, C-terminal domain; arginine repressor, DNA binding domain; TIGRFAM: arginine repressor; arginine repressor ArgR complement(1047940..1048461) Treponema succinifaciens DSM 2489 10431081 YP_004365200.1 CDS Tresu_0983 NC_015385.1 1048472 1050877 R KEGG: ssm:Spirs_2256 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1048472..1050877) Treponema succinifaciens DSM 2489 10431082 YP_004365201.1 CDS Tresu_0984 NC_015385.1 1050998 1052587 D COGs: COG0166 Glucose-6-phosphate isomerase; HAMAP: phosphoglucose isomerase (PGI); InterPro IPR001672; KEGG: bpb:bpr_I0035 glucose-6-phosphate isomerase GPI; PFAM: phosphoglucose isomerase (PGI); SPTR: Glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase; glucose-6-phosphate isomerase 1050998..1052587 Treponema succinifaciens DSM 2489 10431083 YP_004365202.1 CDS Tresu_0985 NC_015385.1 1052655 1053548 R COGs: COG0084 Mg-dependent DNase; InterPro IPR001130; KEGG: tde:TDE2029 TatD family hydrolase; PFAM: deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family; TatD-related deoxyribonuclease complement(1052655..1053548) Treponema succinifaciens DSM 2489 10431084 YP_004365203.1 CDS Tresu_0986 NC_015385.1 1053764 1054252 R KEGG: tde:TDE2305 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1053764..1054252) Treponema succinifaciens DSM 2489 10431086 YP_004365204.1 CDS Tresu_0987 NC_015385.1 1054272 1054436 R hypothetical protein complement(1054272..1054436) Treponema succinifaciens DSM 2489 10431087 YP_004365205.1 CDS Tresu_0988 NC_015385.1 1054440 1054802 R COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: ssm:Spirs_1880 protein of unknown function UPF0102; PFAM: Uncharacterised protein family UPF0102; SPTR: HD domain protein; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: TIGR00252 family protein; hypothetical protein complement(1054440..1054802) Treponema succinifaciens DSM 2489 10431088 YP_004365206.1 CDS Tresu_0989 NC_015385.1 1054799 1055062 R COGs: COG1377 flagellar biosynthesis pathway component FlhB; InterPro IPR006135; KEGG: tde:TDE2301 FlhB domain-containing protein; PFAM: Type III secretion exporter; SPTR: FlhB domain protein; PFAM: FlhB HrpN YscU SpaS Family; type III secretion exporter complement(1054799..1055062) Treponema succinifaciens DSM 2489 10431089 YP_004365207.1 CDS Tresu_0990 NC_015385.1 1055059 1056093 R KEGG: tde:TDE0886 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1055059..1056093) Treponema succinifaciens DSM 2489 10431090 YP_004365208.1 CDS Tresu_0991 NC_015385.1 1056188 1056661 R COGs: COG0335 ribosomal protein L19; HAMAP: ribosomal protein L19; InterPro IPR001857; KEGG: tde:TDE0885 50S ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type; 50S ribosomal protein L19 complement(1056188..1056661) Treponema succinifaciens DSM 2489 10431091 YP_004365209.1 CDS Tresu_0992 NC_015385.1 1056671 1057483 R COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; InterPro IPR002649:IPR016009; KEGG: tde:TDE0884 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase complement(1056671..1057483) Treponema succinifaciens DSM 2489 10431092 YP_004365210.1 CDS Tresu_0993 NC_015385.1 1057489 1058094 R COGs: COG0806 RimM protein required for 16S rRNA processing; HAMAP: 16S rRNA processing protein RimM; InterPro IPR011961:IPR002676; KEGG: sta:STHERM_c10550 16S rRNA processing protein RimM; PFAM: RimM protein; SPTR: 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM; ribosome maturation factor rimM complement(1057489..1058094) Treponema succinifaciens DSM 2489 10431093 YP_004365211.1 CDS Tresu_0994 NC_015385.1 1058094 1058327 R COGs: COG1837 RNA-binding protein (contains KH domain); HAMAP: Uncharacterised protein family UPF0109, bacterial; InterPro IPR020627; KEGG: tde:TDE0882 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1058094..1058327) Treponema succinifaciens DSM 2489 10431094 YP_004365212.1 CDS Tresu_0995 NC_015385.1 1058345 1058611 R COGs: COG0228 ribosomal protein S16; HAMAP: ribosomal protein S16; InterPro IPR000307; KEGG: cbt:CLH_1197 30S ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; TIGRFAM: ribosomal protein S16; 30S ribosomal protein S16 complement(1058345..1058611) Treponema succinifaciens DSM 2489 10431095 YP_004365213.1 CDS Tresu_0996 NC_015385.1 1058857 1060041 D COGs: COG0153 Galactokinase; HAMAP: Galactokinase, bacterial; InterProIPR000705:IPR022963:IPR019539:IPR006204:IPR 013750; KEGG: tde:TDE2212 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; PRIAM: Galactokinase; SPTR: Galactokinase; TIGRFAM: Galactokinase; PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase; Galactokinase 1058857..1060041 Treponema succinifaciens DSM 2489 10431096 YP_004365214.1 CDS Tresu_0997 NC_015385.1 1060346 1061881 D COGs: COG1418 HD superfamily hydrolase; HAMAP: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; InterProIPR017705:IPR006675:IPR004087:IPR003607:IPR 018111:IPR006674; KEGG: tde:TDE0237 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; K Homology, type 1, subgroup; SMART: Metal-dependent phosphohydrolase, HD domain; K Homology; SPTR: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Uncharacterised protein family HDIG; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG; 2,3 cyclic-nucleotide 2-phosphodiesterase 1060346..1061881 Treponema succinifaciens DSM 2489 10431097 YP_004365215.1 CDS Tresu_0998 NC_015385.1 1061990 1063183 D hypothetical protein 1061990..1063183 Treponema succinifaciens DSM 2489 10431098 YP_004365216.1 CDS Tresu_0999 NC_015385.1 1063244 1064551 D KEGG: cbt:CLH_2989 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1063244..1064551 Treponema succinifaciens DSM 2489 10431099 YP_004365217.1 CDS Tresu_1000 NC_015385.1 1064564 1066180 D COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: ere:EUBREC_2623 AlgI; PFAM: Membrane bound O-acyl transferase, MBOAT; SPTR: AlgI; PFAM: MBOAT family; membrane bound O-acyl transferase MBOAT family protein 1064564..1066180 Treponema succinifaciens DSM 2489 10431100 YP_004365218.1 CDS Tresu_1001 NC_015385.1 1066213 1067718 D COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein; InterPro IPR000873; KEGG: eel:EUBELI_00114 hypothetical protein; PFAM: AMP-dependent synthetase/ligase; PRIAM: phenylalanine racemase (ATP-hydrolyzing); SPTR: Non-ribosomal peptide synthetase modules and related proteins; PFAM: AMP-binding enzyme; TIGRFAM: amino acid adenylation domain; phenylalanine racemase 1066213..1067718 Treponema succinifaciens DSM 2489 10431101 YP_004365219.1 CDS Tresu_1002 NC_015385.1 1067705 1068874 D COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR022644:IPR022643; KEGG: eel:EUBELI_00115 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal; PRIAM: Diaminopimelate decarboxylase; SPTR: Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; diaminopimelate decarboxylase 1067705..1068874 Treponema succinifaciens DSM 2489 10431102 YP_004365220.1 CDS Tresu_1003 NC_015385.1 1068894 1069115 D KEGG: eel:EUBELI_00116 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: phosphopantetheine attachment site; hypothetical protein 1068894..1069115 Treponema succinifaciens DSM 2489 10431103 YP_004365221.1 CDS Tresu_1004 NC_015385.1 1069121 1070014 R COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bde:BDP_2034 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2; family 2 glycosyl transferase complement(1069121..1070014) Treponema succinifaciens DSM 2489 10431104 YP_004365222.1 CDS Tresu_1005 NC_015385.1 1070115 1070327 R KEGG: tde:TDE0466 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF2281); hypothetical protein complement(1070115..1070327) Treponema succinifaciens DSM 2489 10431105 YP_004365223.1 CDS Tresu_1006 NC_015385.1 1070487 1070885 R KEGG: naz:Aazo_4912 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1070487..1070885) Treponema succinifaciens DSM 2489 10431106 YP_004365224.1 CDS Tresu_1007 NC_015385.1 1070973 1071305 R InterPro IPR001173; KEGG: naz:Aazo_4912 hypothetical protein; PFAM: glycosyl transferase, family 2; SPTR: Putative uncharacterized protein; PFAM: glycosyl transferase family 2; family 2 glycosyl transferase complement(1070973..1071305) Treponema succinifaciens DSM 2489 10431107 YP_004365225.1 CDS Tresu_1008 NC_015385.1 1071364 1072197 R InterPro IPR001173; KEGG: naz:Aazo_4912 hypothetical protein; PFAM: glycosyl transferase, family 2; SPTR: Putative uncharacterized protein; PFAM: glycosyl transferase family 2; family 2 glycosyl transferase complement(1071364..1072197) Treponema succinifaciens DSM 2489 10431108 YP_004365226.1 CDS Tresu_1009 NC_015385.1 1072447 1072551 D hypothetical protein 1072447..1072551 Treponema succinifaciens DSM 2489 10431109 YP_004365227.1 CDS Tresu_1010 NC_015385.1 1072535 1072903 D InterPro IPR008894; KEGG: ant:Arnit_2553 WxcM domain-containing protein; PFAM: WxcM-like, C-terminal; SPTR: WxcM domain protein; PFAM: WxcM-like, C-terminal; WxcM-like domain-containing protein 1072535..1072903 Treponema succinifaciens DSM 2489 10431110 YP_004365228.1 CDS Tresu_1011 NC_015385.1 1072896 1073993 D COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: phe:Phep_2016 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: glutamine--scyllo-inositol transaminase; SPTR: Sugar pyridoxal-phosphate-dependent aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; glutamine--scyllo-inositol transaminase 1072896..1073993 Treponema succinifaciens DSM 2489 10431111 YP_004365229.1 CDS Tresu_1012 NC_015385.1 1074002 1074916 D COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_0291 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: Bactoprenol glucosyl transferase; PFAM: glycosyl transferase family 2; family 2 glycosyl transferase 1074002..1074916 Treponema succinifaciens DSM 2489 10431112 YP_004365230.1 CDS Tresu_1013 NC_015385.1 1074926 1077625 D COGs: COG4485 membrane protein; InterPro IPR018580; KEGG: eel:EUBELI_00940 hypothetical protein; PFAM: Uncharacterised protein family YfhO; SPTR: Putative uncharacterized protein; PFAM: Bacterial membrane protein YfhO; hypothetical protein 1074926..1077625 Treponema succinifaciens DSM 2489 10431113 YP_004365231.1 CDS Tresu_1014 NC_015385.1 1077618 1077974 D KEGG: cbk:CLL_A3239 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family; hypothetical protein 1077618..1077974 Treponema succinifaciens DSM 2489 10431114 YP_004365232.1 CDS Tresu_1015 NC_015385.1 1077978 1078322 D InterPro IPR000620; KEGG: elm:ELI_1406 EamA-like transporter family; PFAM: Drug/metabolite transporter; SPTR: EamA-like transporter family; PFAM: EamA-like transporter family; hypothetical protein 1077978..1078322 Treponema succinifaciens DSM 2489 10431115 YP_004365233.1 CDS Tresu_1016 NC_015385.1 1078508 1081237 D COGs: COG4485 membrane protein; InterPro IPR018580; KEGG: eel:EUBELI_00940 hypothetical protein; PFAM: Uncharacterised protein family YfhO; SPTR: Putative uncharacterized protein; PFAM: Bacterial membrane protein YfhO; hypothetical protein 1078508..1081237 Treponema succinifaciens DSM 2489 10431116 YP_004365234.1 CDS Tresu_1017 NC_015385.1 1081312 1081449 R hypothetical protein complement(1081312..1081449) Treponema succinifaciens DSM 2489 10431117 YP_004365235.1 CDS Tresu_1018 NC_015385.1 1081433 1081858 R KEGG: bvu:BVU_0429 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1081433..1081858) Treponema succinifaciens DSM 2489 10431118 YP_004365236.1 CDS Tresu_1019 NC_015385.1 1082035 1084083 R COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; InterPro IPR011853:IPR010656; KEGG: brm:Bmur_0799 TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; TRAP transporter, 4TM/12TM fusion protein complement(1082035..1084083) Treponema succinifaciens DSM 2489 10431119 YP_004365237.1 CDS Tresu_1020 NC_015385.1 1084100 1084615 R COGs: COG4729 conserved hypothetical protein; InterPro IPR015001; KEGG: brm:Bmur_0798 domain of unknown function DUF1850; PFAM: protein of unknown function DUF1850; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1850); hypothetical protein complement(1084100..1084615) Treponema succinifaciens DSM 2489 10431120 YP_004365238.1 CDS Tresu_1021 NC_015385.1 1084630 1085580 R COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852:IPR015168; KEGG: brm:Bmur_0797 TRAP transporter solute receptor, TAXI family; SPTR: TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family; PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor, TAXI family complement(1084630..1085580) Treponema succinifaciens DSM 2489 10431121 YP_004365239.1 CDS Tresu_1022 NC_015385.1 1085686 1086648 R KEGG: fsu:Fisuc_0710 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: glycosyl transferase family 8; hypothetical protein complement(1085686..1086648) Treponema succinifaciens DSM 2489 10431122 YP_004365240.1 CDS Tresu_1023 NC_015385.1 1086883 1087254 R KEGG: ere:EUBREC_2495 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1086883..1087254) Treponema succinifaciens DSM 2489 10431123 YP_004365241.1 CDS Tresu_1025 NC_015385.1 1088526 1089437 R KEGG: fjo:Fjoh_0919 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1088526..1089437) Treponema succinifaciens DSM 2489 10431125 YP_004365242.1 CDS Tresu_1026 NC_015385.1 1089454 1089783 R hypothetical protein complement(1089454..1089783) Treponema succinifaciens DSM 2489 10431126 YP_004365243.1 CDS Tresu_1028 NC_015385.1 1091016 1092560 R KEGG: bpb:bpr_I2412 polysaccharide biosynthesis protein; SPTR: EpsT; polysaccharide biosynthesis protein complement(1091016..1092560) Treponema succinifaciens DSM 2489 10431128 YP_004365244.1 CDS Tresu_1029 NC_015385.1 1092572 1094275 R KEGG: ade:Adeh_4294 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1092572..1094275) Treponema succinifaciens DSM 2489 10431129 YP_004365245.1 CDS Tresu_1030 NC_015385.1 1094606 1094776 D hypothetical protein 1094606..1094776 Treponema succinifaciens DSM 2489 10431131 YP_004365246.1 CDS Tresu_1031 NC_015385.1 1094773 1095405 D KEGG: fsu:Fisuc_2411 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1094773..1095405 Treponema succinifaciens DSM 2489 10431132 YP_004365247.1 CDS Tresu_1032 NC_015385.1 1095508 1097238 D COGs: COG1001 adenine deaminase; HAMAP: adenine deaminase; InterPro IPR006679:IPR006680; KEGG: bhy:BHWA1_01698 adenine deaminase; PFAM: Amidohydrolase 1; PRIAM: adenine deaminase; SPTR: adenine deaminase; TIGRFAM: adenine deaminase; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase; adenine deaminase 1095508..1097238 Treponema succinifaciens DSM 2489 10431133 YP_004365248.1 CDS Tresu_1033 NC_015385.1 1097291 1099696 D COGs: COG0466 ATP-dependent Lon protease; InterProIPR004815:IPR003111:IPR003593:IPR003959:IPR 008269; KEGG: tde:TDE0670 ATP-dependent protease La; PFAM: peptidase S16, Lon C-terminal; peptidase S16, lon N-terminal; ATPase, AAA-type, core; PRIAM: Endopeptidase La; SMART: peptidase S16, lon N-terminal; ATPase, AAA+ type, core; SPTR: ATP-dependent protease La; TIGRFAM: peptidase S16, ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La; anti-sigma H sporulation factor LonB 1097291..1099696 Treponema succinifaciens DSM 2489 10431134 YP_004365249.1 CDS Tresu_1034 NC_015385.1 1099700 1100422 D hypothetical protein 1099700..1100422 Treponema succinifaciens DSM 2489 10431135 YP_004365250.1 CDS Tresu_1037 NC_015385.1 1101976 1102206 R hypothetical protein complement(1101976..1102206) Treponema succinifaciens DSM 2489 10431138 YP_004365251.1 CDS Tresu_1038 NC_015385.1 1102551 1102895 D COGs: COG1716 FOG: FHA domain; InterPro IPR000253; KEGG: sta:STHERM_c06930 hypothetical protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain; SPTR: Putative uncharacterized protein; PFAM: FHA domain; FHA domain-containing protein 1102551..1102895 Treponema succinifaciens DSM 2489 10431141 YP_004365252.1 CDS Tresu_1039 NC_015385.1 1102897 1103913 D KEGG: sta:STHERM_c06960 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1102897..1103913 Treponema succinifaciens DSM 2489 10431142 YP_004365253.1 CDS Tresu_1040 NC_015385.1 1103933 1105564 D COGs: COG0515 serine/threonine protein kinase; InterPro IPR002290:IPR020635:IPR017442; KEGG: sta:STHERM_c06970 serine/threonine-protein kinase Sps1; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Non-specific protein-tyrosine kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine-protein kinase Sps1; PFAM: protein kinase domain; serine/threonine protein kinase 1103933..1105564 Treponema succinifaciens DSM 2489 10431143 YP_004365254.1 CDS Tresu_1041 NC_015385.1 1105640 1106431 D hypothetical protein 1105640..1106431 Treponema succinifaciens DSM 2489 10431144 YP_004365255.1 CDS Tresu_1042 NC_015385.1 1106409 1107854 R COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR006405:IPR015977; KEGG: tde:TDE0174 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; SPTR: Nicotinate phosphoribosyltransferase; TIGRFAM: Nicotinate phosphoribosyltransferase ATPase AAA; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: ATPase AAA nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase complement(1106409..1107854) Treponema succinifaciens DSM 2489 10431145 YP_004365256.1 CDS Tresu_1043 NC_015385.1 1107969 1108796 R COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: csh:Closa_1973 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1107969..1108796) Treponema succinifaciens DSM 2489 10431146 YP_004365257.1 CDS Tresu_1044 NC_015385.1 1108878 1109969 D COGs: COG1472 beta-glucosidase-related glycosidase; InterPro IPR001764; KEGG: tde:TDE1221 glycosy hydrolase family protein; PFAM: glycoside hydrolase, family 3, N-terminal; SPTR: glycosyl hydrolase, family 3; PFAM: glycosyl hydrolase family 3 N terminal domain; glycoside hydrolase family protein 1108878..1109969 Treponema succinifaciens DSM 2489 10431147 YP_004365258.1 CDS Tresu_1045 NC_015385.1 1109992 1110825 D COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: tde:TDE2162 NOL1/NOP2/sun family protein; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR: NOL1/NOP2/sun family protein; PFAM: NOL1/NOP2/sun family; Fmu (Sun) domain-containing protein 1109992..1110825 Treponema succinifaciens DSM 2489 10431148 YP_004365259.1 CDS Tresu_1046 NC_015385.1 1110921 1112177 D COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR003018:IPR003607:IPR006674; KEGG: tde:TDE2659 GAF domain/HD domain-containing protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; GAF; SMART: Metal-dependent phosphohydrolase, HD domain; GAF; SPTR: GAF domain/HD domain protein; PFAM: HD domain; GAF domain; metal dependent phosphohydrolase with GAF sensor 1110921..1112177 Treponema succinifaciens DSM 2489 10431149 YP_004365260.1 CDS Tresu_1047 NC_015385.1 1112170 1112622 R COGs: COG1671 conserved hypothetical protein; InterPro IPR003791; KEGG: tde:TDE2151 hypothetical protein; PFAM: protein of unknown function DUF188; SPTR: UPF0178 protein TDE_2151; PFAM: Uncharacterized BCR, YaiI/YqxD family COG1671; hypothetical protein complement(1112170..1112622) Treponema succinifaciens DSM 2489 10431150 YP_004365261.1 CDS Tresu_1048 NC_015385.1 1112619 1112921 R KEGG: tpp:TPASS_0846 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Cell division protein ZapA; hypothetical protein complement(1112619..1112921) Treponema succinifaciens DSM 2489 10431151 YP_004365262.1 CDS Tresu_1049 NC_015385.1 1112942 1113415 R KEGG: ssm:Spirs_2593 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1112942..1113415) Treponema succinifaciens DSM 2489 10431152 YP_004365263.1 CDS Tresu_1050 NC_015385.1 1113419 1113778 R COGs: COG0292 ribosomal protein L20; HAMAP: ribosomal protein L20; InterPro IPR005813; KEGG: sta:STHERM_c07790 50S ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; TIGRFAM: ribosomal protein L20; 50S ribosomal protein L20 complement(1113419..1113778) Treponema succinifaciens DSM 2489 10431153 YP_004365264.1 CDS Tresu_1051 NC_015385.1 1113794 1113994 R HAMAP: ribosomal protein L35, non-mitochondrial; InterPro IPR001706:IPR021137; KEGG: tpp:TPASS_0849 50S ribosomal protein L35; PFAM: ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35, non-mitochondrial; PFAM: ribosomal protein L35; TIGRFAM: ribosomal protein L35; 50S ribosomal protein L35 complement(1113794..1113994) Treponema succinifaciens DSM 2489 10431154 YP_004365265.1 CDS Tresu_1052 NC_015385.1 1113999 1114529 R COGs: COG0290 Translation initiation factor 3 (IF-3); HAMAP: Translation initiation factor 3; InterPro IPR001288:IPR019814:IPR019815; KEGG: tpp:TPASS_0850 translation initiation factor IF-3; PFAM: Translation initiation factor 3, N-terminal; Translation initiation factor 3, C-terminal; SPTR: Translation initiation factor IF-3; TIGRFAM: Translation initiation factor 3; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; Translation initiation factor IF-3 complement(1113999..1114529) Treponema succinifaciens DSM 2489 10431155 YP_004365266.1 CDS Tresu_1053 NC_015385.1 1114585 1115238 R hypothetical protein complement(1114585..1115238) Treponema succinifaciens DSM 2489 10431156 YP_004365267.1 CDS Tresu_1054 NC_015385.1 1115372 1116376 R COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771:IPR011289; KEGG: tpp:TPASS_0662 fructose-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: Fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: Fructose-1,6-bisphosphate aldolase, class 2; Ketose-bisphosphate aldolase, class-II; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist; fructose-1,6-bisphosphate aldolase complement(1115372..1116376) Treponema succinifaciens DSM 2489 10431157 YP_004365268.1 CDS Tresu_1055 NC_015385.1 1116603 1117337 D InterPro IPR006714; KEGG: tpp:TPASS_0663 possible outer membrane protein; PFAM: flagellar filament outer layer protein FlaA; SPTR: Outer membrane protein; PFAM: flagellar filament outer layer protein Flaa; flagellar filament outer layer protein FlaA 1116603..1117337 Treponema succinifaciens DSM 2489 10431158 YP_004365269.1 CDS Tresu_1056 NC_015385.1 1117358 1118083 D InterPro IPR006714; KEGG: tpp:TPASS_0664 flagellar filament outer layer protein; PFAM: flagellar filament outer layer protein FlaA; SPTR: flagellar filament outer layer protein; PFAM: flagellar filament outer layer protein Flaa; flagellar filament outer layer protein FlaA 1117358..1118083 Treponema succinifaciens DSM 2489 10431159 YP_004365270.1 CDS Tresu_1057 NC_015385.1 1118176 1119108 D COGs: COG4124 beta-mannanase; InterPro IPR022790; KEGG: ccb:Clocel_1947 mannan endo-1,4-beta-mannosidase; PFAM: Endoglucanase H/glycosyl hydrolase family 26; PRIAM: mannan endo-1,4-beta-mannosidase; SPTR: beta-mannanase; PFAM: glycosyl hydrolase family 26; mannan endo-1,4-beta-mannosidase 1118176..1119108 Treponema succinifaciens DSM 2489 10431160 YP_004365271.1 CDS Tresu_1058 NC_015385.1 1119144 1119764 D COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; HAMAP: Bacterial DNA recombination protein RuvA; InterProIPR000085:IPR003583:IPR013849:IPR000445:IPR 011114; KEGG: tde:TDE1863 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; Helix-hairpin-helix motif; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Bacterial DNA recombination protein RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; Helix-hairpin-helix motif; TIGRFAM: Holliday junction DNA helicase, RuvA subunit; Holliday junction ATP-dependent DNA helicase ruvA 1119144..1119764 Treponema succinifaciens DSM 2489 10431161 YP_004365272.1 CDS Tresu_1059 NC_015385.1 1119761 1120903 D COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR004605:IPR003593:IPR008824:IPR003959:IPR 008823; KEGG: tde:TDE1914 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit; Holliday junction ATP-dependent DNA helicase ruvB 1119761..1120903 Treponema succinifaciens DSM 2489 10431162 YP_004365273.1 CDS Tresu_1060 NC_015385.1 1120933 1121973 D COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: Queuosine biosynthesis protein; InterPro IPR003699; KEGG: tde:TDE2451 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1120933..1121973 Treponema succinifaciens DSM 2489 10431163 YP_004365274.1 CDS Tresu_1061 NC_015385.1 1122004 1122849 R COGs: COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM/CutM homologs; InterPro IPR002346; KEGG: tde:TDE0728 FAD-binding protein, ATPase AAA; PFAM: Molybdopterin dehydrogenase, FAD-binding; SPTR: Putative FAD-binding protein; PFAM: FAD binding domain in molybdopterin dehydrogenase; molybdopterin dehydrogenase FAD-binding protein complement(1122004..1122849) Treponema succinifaciens DSM 2489 10431164 YP_004365275.1 CDS Tresu_1062 NC_015385.1 1122794 1123285 R COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041; KEGG: tde:TDE0727 iron-sulfur cluster-binding protein; PFAM: Ferredoxin; SPTR: Iron-sulfur cluster-binding protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; ferredoxin complement(1122794..1123285) Treponema succinifaciens DSM 2489 10431165 YP_004365276.1 CDS Tresu_1063 NC_015385.1 1123257 1125575 R COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274; KEGG: tde:TDE0726 aldehyde oxidase and xanthine dehydrogenase family protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; SPTR: Aldehyde oxidase and xanthine dehydrogenase family protein; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein complement(1123257..1125575) Treponema succinifaciens DSM 2489 10431166 YP_004365277.1 CDS Tresu_1064 NC_015385.1 1125568 1126767 R COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: tde:TDE0725 exopolysaccharide biosynthesis protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Exopolysaccharide biosynthesis protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; DegT/DnrJ/EryC1/StrS aminotransferase complement(1125568..1126767) Treponema succinifaciens DSM 2489 10431167 YP_004365278.1 CDS Tresu_1065 NC_015385.1 1126767 1128293 R COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: tde:TDE0714 capsular polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein CapD-like; SPTR: Capsular polysaccharide biosynthesis protein; PFAM: CoA binding domain; polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD complement(1126767..1128293) Treponema succinifaciens DSM 2489 10431168 YP_004365279.1 CDS Tresu_1066 NC_015385.1 1128367 1128825 R COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains; HAMAP: ribonucleotide reductase regulator NrdR-like; InterPro IPR003796:IPR005144; KEGG: tde:TDE1330 transcriptional regulator NrdR; PFAM: ATP-cone; SPTR: Transcriptional repressor NrdR; TIGRFAM: ribonucleotide reductase regulator NrdR-like; PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR; NrdR family transcriptional regulator complement(1128367..1128825) Treponema succinifaciens DSM 2489 10431169 YP_004365280.1 CDS Tresu_1067 NC_015385.1 1134480 1135016 R hypothetical protein complement(1134480..1135016) Treponema succinifaciens DSM 2489 10431174 YP_004365281.1 CDS Tresu_1068 NC_015385.1 1135013 1136830 R COGs: COG0815 Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; InterPro IPR004563; KEGG: tde:TDE2299 apolipoprotein N-acyltransferase; SPTR: Apolipoprotein N-acyltransferase 2; TIGRFAM: Apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase complement(1135013..1136830) Treponema succinifaciens DSM 2489 10431175 YP_004365282.1 CDS Tresu_1069 NC_015385.1 1136843 1138057 D COGs: COG0153 Galactokinase; InterPro IPR019539:IPR006204; KEGG: tde:TDE2298 galactokinase, ATPase AAA; PFAM: Galactokinase galactose-binding domain; GHMP kinase; PRIAM: Galactokinase; SPTR: Galactokinase; PFAM: Galactokinase galactose-binding signature; GHMP kinases N terminal domain; Galactokinase 1136843..1138057 Treponema succinifaciens DSM 2489 10431176 YP_004365283.1 CDS Tresu_1070 NC_015385.1 1138054 1138860 D COGs: COG0496 acid phosphatase; HAMAP: Survival protein SurE-like phosphatase/nucleotidase; InterPro IPR002828; KEGG: ssm:Spirs_3174 stationary-phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase; SPTR: 5'-nucleotidase surE; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE; multifunctional protein surE 1138054..1138860 Treponema succinifaciens DSM 2489 10431177 YP_004365284.1 CDS Tresu_1071 NC_015385.1 1138872 1139570 D InterPro IPR019734:IPR001440:IPR013105; KEGG: tde:TDE2297 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; SPTR: TPR domain protein; PFAM: Tetratricopeptide repeat; hypothetical protein 1138872..1139570 Treponema succinifaciens DSM 2489 10431178 YP_004365285.1 CDS Tresu_1072 NC_015385.1 1139570 1141618 D InterPro IPR001258; KEGG: tde:TDE2296 hypothetical protein; PFAM: NHL repeat; SPTR: Putative lipoprotein; hypothetical protein 1139570..1141618 Treponema succinifaciens DSM 2489 10431179 YP_004365286.1 CDS Tresu_1073 NC_015385.1 1141569 1142786 R COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; HAMAP: DNA polymerase IV; InterPro IPR022880:IPR001126; KEGG: tde:TDE0963 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: DNA polymerase IV; PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family; IMS family HHH motif; DNA polymerase IV complement(1141569..1142786) Treponema succinifaciens DSM 2489 10431180 YP_004365287.1 CDS Tresu_1074 NC_015385.1 1142776 1144767 R KEGG: tde:TDE0962 hypothetical protein; SPTR: Membrane protein, ATPase AAA; hypothetical protein complement(1142776..1144767) Treponema succinifaciens DSM 2489 10431181 YP_004365288.1 CDS Tresu_1075 NC_015385.1 1145114 1146280 D KEGG: tde:TDE1128 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1145114..1146280 Treponema succinifaciens DSM 2489 10431182 YP_004365289.1 CDS Tresu_1076 NC_015385.1 1146284 1146910 D hypothetical protein 1146284..1146910 Treponema succinifaciens DSM 2489 10431183 YP_004365290.1 CDS Tresu_1077 NC_015385.1 1146934 1147665 D COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; InterPro IPR003358; KEGG: tde:TDE1130 methyltransferase, ATPase AAA; PFAM: tRNA (guanine-N-7) methyltransferase; SPTR: tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N-7) methyltransferase; PFAM: Putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 1146934..1147665 Treponema succinifaciens DSM 2489 10431184 YP_004365291.1 CDS Tresu_1078 NC_015385.1 1147670 1149625 D COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); HAMAP: NAD-dependent DNA ligase; InterProIPR001679:IPR013840:IPR001357:IPR013839:IPR 004150; KEGG: tde:TDE1538 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; BRCT; SMART: NAD-dependent DNA ligase, N-terminal; BRCT; SPTR: DNA ligase, NAD-dependent; TIGRFAM: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent; DNA ligase 1147670..1149625 Treponema succinifaciens DSM 2489 10431185 YP_004365292.1 CDS Tresu_1079 NC_015385.1 1149622 1150602 R COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: tde:TDE2189 M23/M37 peptidase domain-containing protein; PFAM: peptidase M23; SPTR: M23/M37 peptidase domain protein; PFAM: peptidase family M23; peptidase M23 complement(1149622..1150602) Treponema succinifaciens DSM 2489 10431186 YP_004365293.1 CDS Tresu_1080 NC_015385.1 1150632 1152797 R COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR004610:IPR001667:IPR003156; KEGG: tde:TDE2190 single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ-like; phosphoesterase, DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: DHHA1 domain; DHH family; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(1150632..1152797) Treponema succinifaciens DSM 2489 10431187 YP_004365294.1 CDS Tresu_1081 NC_015385.1 1152797 1154122 R COGs: COG0213 Thymidine phosphorylase; InterPro IPR018090:IPR013102:IPR017459:IPR000312; KEGG: tde:TDE2191 pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase, family 3; glycosyl transferase, family 3, N-terminal; Pyrimidine nucleoside phosphorylase, C-terminal; PRIAM: Thymidine phosphorylase; SMART: Pyrimidine nucleoside phosphorylase, C-terminal; SPTR: Pyrimidine-nucleoside phosphorylase; TIGRFAM: Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic; PFAM: glycosyl transferase family, a/b domain; Pyrimidine nucleoside phosphorylase C-terminal domain; glycosyl transferase family, helical bundle domain; TIGRFAM: pyrimidine-nucleoside phosphorylase; pyrimidine-nucleoside phosphorylase complement(1152797..1154122) Treponema succinifaciens DSM 2489 10431188 YP_004365295.1 CDS Tresu_1082 NC_015385.1 1154476 1155198 D KEGG: tde:TDE2259 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1154476..1155198 Treponema succinifaciens DSM 2489 10431189 YP_004365296.1 CDS Tresu_1083 NC_015385.1 1155295 1156047 R COGs: COG1381 Recombinational DNA repair protein (RecF pathway); HAMAP: Recombination protein O, RecO; InterPro IPR003717; KEGG: tde:TDE0436 recombination protein O; PFAM: Recombination protein O, RecO; SPTR: Recombination protein O; TIGRFAM: Recombination protein O, RecO; PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO; DNA repair protein recO complement(1155295..1156047) Treponema succinifaciens DSM 2489 10431190 YP_004365297.1 CDS Tresu_1085 NC_015385.1 1156362 1156577 R hypothetical protein complement(1156362..1156577) Treponema succinifaciens DSM 2489 10431192 YP_004365298.1 CDS Tresu_1086 NC_015385.1 1156619 1157749 R COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein complement(1156619..1157749) Treponema succinifaciens DSM 2489 10431193 YP_004365299.1 CDS Tresu_1087 NC_015385.1 1157876 1158790 R hypothetical protein complement(1157876..1158790) Treponema succinifaciens DSM 2489 10431194 YP_004365300.1 CDS Tresu_1088 NC_015385.1 1158800 1159429 R PFAM: CRISPR-associated protein (cas_TM1812); hypothetical protein complement(1158800..1159429) Treponema succinifaciens DSM 2489 10431195 YP_004365301.1 CDS Tresu_1089 NC_015385.1 1159442 1159855 R hypothetical protein complement(1159442..1159855) Treponema succinifaciens DSM 2489 10431196 YP_004365302.1 CDS Tresu_1090 NC_015385.1 1159938 1163309 R COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935:IPR001650; KEGG: pru:PRU_2890 ATPase AAA type I restriction-modification system, R subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Helicase, C-terminal; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Putative type I restriction-modification system, R subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Helicase conserved C-terminal domain; Domain of unknown function (DUF3559); Type III restriction enzyme, res subunit; Type I site-specific deoxyribonuclease complement(1159938..1163309) Treponema succinifaciens DSM 2489 10431197 YP_004365303.1 CDS Tresu_1091 NC_015385.1 1163328 1163531 R KEGG: lba:Lebu_0827 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1163328..1163531) Treponema succinifaciens DSM 2489 10431198 YP_004365304.1 CDS Tresu_1092 NC_015385.1 1163687 1163977 R KEGG: lba:Lebu_0828 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1163687..1163977) Treponema succinifaciens DSM 2489 10431199 YP_004365305.1 CDS Tresu_1093 NC_015385.1 1163950 1164528 R InterPro IPR000055; KEGG: bal:BACI_c43150 type I restriction modification enzyme protein S; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Putative uncharacterized protein; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein complement(1163950..1164528) Treponema succinifaciens DSM 2489 10431200 YP_004365306.1 CDS Tresu_1094 NC_015385.1 1164532 1165524 R COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: fma:FMG_1375 ATPase AAA integrase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Possible bacteriophage integrase/recombinase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; integrase family protein complement(1164532..1165524) Treponema succinifaciens DSM 2489 10431201 YP_004365307.1 CDS Tresu_1095 NC_015385.1 1165571 1166209 R InterPro IPR000055; KEGG: axy:AXYL_06350 type I restriction enzyme StySPI specificity protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I restriction enzyme StySPI specificity protein; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein complement(1165571..1166209) Treponema succinifaciens DSM 2489 10431202 YP_004365308.1 CDS Tresu_1096 NC_015385.1 1166206 1167204 R COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: fma:FMG_1375 ATPase AAA integrase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Possible bacteriophage integrase/recombinase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; integrase family protein complement(1166206..1167204) Treponema succinifaciens DSM 2489 10431203 YP_004365309.1 CDS Tresu_1097 NC_015385.1 1167251 1168264 R InterPro IPR000055; KEGG: bal:BACI_c43150 type I restriction modification enzyme protein S; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Putative uncharacterized protein; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein complement(1167251..1168264) Treponema succinifaciens DSM 2489 10431204 YP_004365310.1 CDS Tresu_1098 NC_015385.1 1168261 1169682 R COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: ere:EUBREC_0652 ATP-dependent DNA helicase RecG-related protein; PFAM: ATPase, AAA-4; SPTR: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen; PFAM: Divergent AAA domain; transcriptional regulator complement(1168261..1169682) Treponema succinifaciens DSM 2489 10431205 YP_004365311.1 CDS Tresu_1099 NC_015385.1 1169686 1171212 R COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: lrf:LAR_1347 type I restriction-modification system M subunit; PFAM: DNA methylase, adenine-specific; SPTR: Type I site-specific deoxyribonuclease; PFAM: N-6 DNA methylase; HsdM N-terminal domain; N-6 DNA methylase complement(1169686..1171212) Treponema succinifaciens DSM 2489 10431206 YP_004365312.1 CDS Tresu_1100 NC_015385.1 1171258 1171662 R hypothetical protein complement(1171258..1171662) Treponema succinifaciens DSM 2489 10431207 YP_004365313.1 CDS Tresu_1101 NC_015385.1 1172035 1173396 R COGs: COG1322 conserved hypothetical protein; InterPro IPR003798; KEGG: aps:CFPG_608 DNA recombination protein RmuC homolog; PFAM: DNA recombination RmuC; SPTR: DNA recombination protein rmuC homolog; PFAM: RmuC family; RmuC-domain-containing protein complement(1172035..1173396) Treponema succinifaciens DSM 2489 10431208 YP_004365314.1 CDS Tresu_1102 NC_015385.1 1173489 1173947 R SPTR: DNA replication protein; hypothetical protein complement(1173489..1173947) Treponema succinifaciens DSM 2489 10431209 YP_004365315.1 CDS Tresu_1104 NC_015385.1 1174654 1174845 R hypothetical protein complement(1174654..1174845) Treponema succinifaciens DSM 2489 10431211 YP_004365316.1 CDS Tresu_1105 NC_015385.1 1175517 1175672 R InterPro IPR014795; PFAM: protein of unknown function DUF1778; PFAM: protein of unknown function (DUF1778); hypothetical protein complement(1175517..1175672) Treponema succinifaciens DSM 2489 10431212 YP_004365317.1 CDS Tresu_1106 NC_015385.1 1175811 1176299 D InterPro IPR000055; KEGG: tde:TDE2743 type I restriction-modification system, S subunit, truncation; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I restriction-modification system, S subunit, truncation; manually curated; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein 1175811..1176299 Treponema succinifaciens DSM 2489 10431213 YP_004365318.1 CDS Tresu_1107 NC_015385.1 1176270 1176827 R InterPro IPR000055; KEGG: tde:TDE2744 type I restriction-modification system, S subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I restriction-modification system, S subunit; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein complement(1176270..1176827) Treponema succinifaciens DSM 2489 10431214 YP_004365319.1 CDS Tresu_1108 NC_015385.1 1176855 1177325 R KEGG: glo:Glov_2990 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1176855..1177325) Treponema succinifaciens DSM 2489 10431215 YP_004365320.1 CDS Tresu_1109 NC_015385.1 1177315 1178466 R KEGG: glo:Glov_2991 abortive infection protein; SPTR: Abortive infection protein; abortive infection protein complement(1177315..1178466) Treponema succinifaciens DSM 2489 10431216 YP_004365321.1 CDS Tresu_1110 NC_015385.1 1178568 1179389 D COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: tde:TDE2742 phage integrase family site specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Site-specific recombinase, phage integrase family; PFAM: Phage integrase family; integrase family protein 1178568..1179389 Treponema succinifaciens DSM 2489 10431217 YP_004365322.1 CDS Tresu_1111 NC_015385.1 1179434 1179652 R hypothetical protein complement(1179434..1179652) Treponema succinifaciens DSM 2489 10431218 YP_004365323.1 CDS Tresu_1112 NC_015385.1 1179645 1180652 R InterPro IPR002825; KEGG: dly:Dehly_0078 hypothetical protein; PFAM: peptidase S49, serine-peptidase prokaryotes; SPTR: Putative uncharacterized protein; PFAM: serine dehydrogenase proteinase; hypothetical protein complement(1179645..1180652) Treponema succinifaciens DSM 2489 10431219 YP_004365324.1 CDS Tresu_1113 NC_015385.1 1180717 1182189 R COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: cph:Cpha266_1398 restriction modification system DNA specificity subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I restriction enzyme EcoAI specificity protein; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein complement(1180717..1182189) Treponema succinifaciens DSM 2489 10431220 YP_004365325.1 CDS Tresu_1114 NC_015385.1 1182194 1183636 R COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: tde:TDE2746 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; HsdM N-terminal domain; adenine-specific DNA-methyltransferase complement(1182194..1183636) Treponema succinifaciens DSM 2489 10431221 YP_004365326.1 CDS Tresu_1115 NC_015385.1 1183639 1186446 R COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935; KEGG: tde:TDE2747 type I restriction-modification system, R subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Type I restriction-modification system, R subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Domain of unknown function (DUF3559); Type III restriction enzyme, res subunit; Type I site-specific deoxyribonuclease complement(1183639..1186446) Treponema succinifaciens DSM 2489 10431222 YP_004365327.1 CDS Tresu_1117 NC_015385.1 1187774 1188958 R KEGG: elm:ELI_1911 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: HipA-like C-terminal domain; hypothetical protein complement(1187774..1188958) Treponema succinifaciens DSM 2489 10431224 YP_004365328.1 CDS Tresu_1119 NC_015385.1 1190767 1191186 D COGs: COG1815 flagellar basal body protein; InterPro IPR006300; KEGG: tde:TDE1212 flagellar basal-body rod protein FlgB; SPTR: flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 1190767..1191186 Treponema succinifaciens DSM 2489 10431226 YP_004365329.1 CDS Tresu_1120 NC_015385.1 1191219 1191680 D COGs: COG1558 flagellar basal body rod protein; InterPro IPR006299:IPR001444:IPR010930; KEGG: sta:STHERM_c09080 hypothetical protein; PFAM: Domain of unknown function DUF1078, C-terminal; flagellar basal body rod protein, N-terminal; SPTR: flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function (DUF1078); flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 1191219..1191680 Treponema succinifaciens DSM 2489 10431227 YP_004365330.1 CDS Tresu_1121 NC_015385.1 1191710 1192060 D InterPro IPR001624; KEGG: tpp:TPASS_0398 flagellar hook-basal body protein FliE; PFAM: flagellar hook-basal body complex protein FliE; SPTR: flagellar hook-basal body complex protein fliE; TIGRFAM: flagellar hook-basal body complex protein FliE; PFAM: flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 1191710..1192060 Treponema succinifaciens DSM 2489 10431228 YP_004365331.1 CDS Tresu_1122 NC_015385.1 1192319 1194025 D COGs: COG1766 flagellar biosynthesis/type III secretory pathway lipoprotein; InterPro IPR000067:IPR006182:IPR013556; KEGG: tpp:TPASS_0399 flagellar MS-ring protein; PFAM: flagellar M-ring C-terminal; Secretory protein YscJ/FliF; SPTR: flagellar M-ring protein FliF; TIGRFAM: flagellar FliF M-ring protein; PFAM: Secretory protein of YscJ/FliF family; flagellar M-ring protein C-terminal; TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF); flagellar M-ring protein FliF 1192319..1194025 Treponema succinifaciens DSM 2489 10431229 YP_004365332.1 CDS Tresu_1123 NC_015385.1 1194029 1195087 D COGs: COG1536 flagellar motor switch protein; InterPro IPR000090:IPR023087; KEGG: ssm:Spirs_1563 flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG, C-terminal; SPTR: flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG; flagellar motor switch protein FliG 1194029..1195087 Treponema succinifaciens DSM 2489 10431230 YP_004365333.1 CDS Tresu_1124 NC_015385.1 1195108 1196040 D COGs: COG1317 flagellar biosynthesis/type III secretory pathway protein; InterPro IPR018035; KEGG: tde:TDE1217 flagellar assembly protein H; PFAM: flagellar assembly protein FliH/Type III secretion system HrpE; SPTR: flagellar assembly protein fliH, ATPase AAA; PFAM: flagellar assembly protein FliH; flagellar assembly protein FliH/Type III secretion system HrpE 1195108..1196040 Treponema succinifaciens DSM 2489 10431231 YP_004365334.1 CDS Tresu_1125 NC_015385.1 1196174 1197523 D COGs: COG1157 flagellar biosynthesis/type III secretory pathway ATPase; InterPro IPR005714:IPR003593:IPR004100:IPR000194; KEGG: tde:TDE1218 flagellum-specific ATP synthase FliI; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; PRIAM: H(+)-transporting two-sector ATPase; SMART: ATPase, AAA+ type, core; SPTR: flagellar protein export ATPase FliI; TIGRFAM: ATPase, type III secretion system, FliI/YscN; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; FliI/YscN family ATPase 1196174..1197523 Treponema succinifaciens DSM 2489 10431232 YP_004365335.1 CDS Tresu_1126 NC_015385.1 1197556 1197963 D InterPro IPR012823; KEGG: tde:TDE1219 flagellar protein FliJ, ATPase AAA; SPTR: flagellar protein FliJ, ATPase AAA; TIGRFAM: flagellar export FliJ; PFAM: flagellar FliJ protein; TIGRFAM: flagellar export protein FliJ; flagellar export protein FliJ 1197556..1197963 Treponema succinifaciens DSM 2489 10431233 YP_004365336.1 CDS Tresu_1127 NC_015385.1 1197960 1199612 R COGs: COG0572 Uridine kinase; InterPro IPR003593; KEGG: tde:TDE2289 phosphoribulokinase/uridine kinase family protein; SMART: ATPase, AAA+ type, core; SPTR: Uridine kinase; PFAM: phosphoribulokinase / Uridine kinase family; ATPase AAA complement(1197960..1199612) Treponema succinifaciens DSM 2489 10431234 YP_004365337.1 CDS Tresu_1128 NC_015385.1 1199730 1200143 R InterPro IPR003115; KEGG: ssm:Spirs_1726 ParB domain protein nuclease; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: ParB domain protein nuclease; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; ParB domain-containing protein nuclease complement(1199730..1200143) Treponema succinifaciens DSM 2489 10431235 YP_004365338.1 CDS Tresu_1129 NC_015385.1 1200173 1202755 R COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR011816:IPR001264:IPR001460; KEGG: tpp:TPASS_0705 penicillin-binding protein; PFAM: glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein; TIGRFAM: Penicillin-binding protein 1A; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family; penicillin-binding protein complement(1200173..1202755) Treponema succinifaciens DSM 2489 10431236 YP_004365339.1 CDS Tresu_1130 NC_015385.1 1202978 1204150 D COGs: COG1985 Pyrimidine reductase riboflavin biosynthesis; InterPro IPR004794:IPR011549:IPR002125:IPR002734; KEGG: ere:EUBREC_3132 riboflavin biosynthesis protein; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: Diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase; TIGRFAM: riboflavin biosynthesis protein RibD; riboflavin-specific deaminase, C-terminal; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD; riboflavin biosynthesis protein RibD 1202978..1204150 Treponema succinifaciens DSM 2489 10431237 YP_004365340.1 CDS Tresu_1131 NC_015385.1 1204153 1204764 D COGs: COG0307 riboflavin synthase alpha chain; InterPro IPR001783; KEGG: bhy:BHWA1_02027 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; PRIAM: riboflavin synthase; SPTR: riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit; riboflavin synthase subunit alpha 1204153..1204764 Treponema succinifaciens DSM 2489 10431238 YP_004365341.1 CDS Tresu_1132 NC_015385.1 1204754 1205968 D COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; riboflavin biosynthesis protein RibBA; InterPro IPR000422:IPR000926:IPR016299; KEGG: ere:EUBREC_3130 riboflavin biosynthesis; GTP-cyclohydrolase II; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; SPTR: riboflavin biosynthesis protein ribBA; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1204754..1205968 Treponema succinifaciens DSM 2489 10431239 YP_004365342.1 CDS Tresu_1133 NC_015385.1 1205998 1206468 D COGs: COG0054 riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: eel:EUBELI_20111 riboflavin synthase beta chain; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 1205998..1206468 Treponema succinifaciens DSM 2489 10431240 YP_004365343.1 CDS Tresu_1134 NC_015385.1 1206647 1207948 R COGs: COG0124 histidyl-tRNA synthetase; HAMAP: histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR015807:IPR002314:IPR004154; KEGG: tde:TDE1442 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; PRIAM: histidine--tRNA ligase; SPTR: histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase, class IIa, subgroup; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase; histidyl-tRNA synthetase complement(1206647..1207948) Treponema succinifaciens DSM 2489 10431241 YP_004365344.1 CDS Tresu_1135 NC_015385.1 1208099 1208905 D COGs: COG1521 Putative transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: sti:Sthe_0460 ATPase AAA transcriptional acitvator, Baf family; PFAM: Type III pantothenate kinase; SPTR: Type III pantothenate kinase 2; TIGRFAM: Type III pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III; Baf family transcriptional acitvator 1208099..1208905 Treponema succinifaciens DSM 2489 10431242 YP_004365345.1 CDS Tresu_1136 NC_015385.1 1208917 1210074 R COGs: COG2089 Sialic acid synthase; InterPro IPR013132:IPR013974; KEGG: tde:TDE0960 NeuB family protein; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain; SPTR: NeuB family protein; PFAM: SAF domain; NeuB family; N-acetylneuraminic acid synthase domain-containing protein complement(1208917..1210074) Treponema succinifaciens DSM 2489 10431243 YP_004365346.1 CDS Tresu_1137 NC_015385.1 1210635 1213817 D COGs: COG0060 Isoleucyl-tRNA synthetase; HAMAP: Isoleucyl-tRNA synthetase, class Ia; InterPro IPR002301:IPR002300:IPR013155; KEGG: tde:TDE2663 isoleucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: Isoleucine--tRNA ligase; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 1210635..1213817 Treponema succinifaciens DSM 2489 10431244 YP_004365347.1 CDS Tresu_1138 NC_015385.1 1213848 1214786 D KEGG: tde:TDE2662 ATPase AAA lipoprotein; SPTR: lipoprotein, ATPase AAA; hypothetical protein 1213848..1214786 Treponema succinifaciens DSM 2489 10431245 YP_004365348.1 CDS Tresu_1139 NC_015385.1 1214783 1215391 D InterPro IPR019734:IPR001440; KEGG: tde:TDE1613 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; PFAM: Tetratricopeptide repeat; hypothetical protein 1214783..1215391 Treponema succinifaciens DSM 2489 10431246 YP_004365349.1 CDS Tresu_1140 NC_015385.1 1215398 1216741 R KEGG: tde:TDE1456 GGDEF domain-containing protein; SPTR: GGDEF domain protein; hypothetical protein complement(1215398..1216741) Treponema succinifaciens DSM 2489 10431247 YP_004365350.1 CDS Tresu_1141 NC_015385.1 1216747 1218234 R COGs: COG2604 conserved hypothetical protein; InterPro IPR002826; KEGG: tde:TDE1457 hypothetical protein; PFAM: protein of unknown function DUF115; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function DUF115; hypothetical protein complement(1216747..1218234) Treponema succinifaciens DSM 2489 10431248 YP_004365351.1 CDS Tresu_1142 NC_015385.1 1218231 1219736 R InterPro IPR002826; KEGG: tde:TDE1458 hypothetical protein; PFAM: protein of unknown function DUF115; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function DUF115; hypothetical protein complement(1218231..1219736) Treponema succinifaciens DSM 2489 10431249 YP_004365352.1 CDS Tresu_1143 NC_015385.1 1219826 1222849 R KEGG: ssm:Spirs_1936 zinc finger-domain-containing protein; SPTR: Zinc finger-domain-containing protein; hypothetical protein complement(1219826..1222849) Treponema succinifaciens DSM 2489 10431250 YP_004365353.1 CDS Tresu_1144 NC_015385.1 1223033 1223509 D InterPro IPR007060; KEGG: tde:TDE1461 septum formation initiator family protein; PFAM: septum formation initiator; SPTR: septum formation initiator family protein; PFAM: septum formation initiator; septum formation initiator 1223033..1223509 Treponema succinifaciens DSM 2489 10431251 YP_004365354.1 CDS Tresu_1145 NC_015385.1 1223496 1224077 D COGs: COG0009 Putative translation factor (SUA5); InterPro IPR004388:IPR006070; KEGG: tde:TDE1462 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 1223496..1224077 Treponema succinifaciens DSM 2489 10431252 YP_004365355.1 CDS Tresu_1146 NC_015385.1 1224067 1224906 R KEGG: tpp:TPASS_0183 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1224067..1224906) Treponema succinifaciens DSM 2489 10431253 YP_004365356.1 CDS Tresu_1147 NC_015385.1 1224919 1225383 R COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: tde:TDE1464 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein; SsrA-binding protein complement(1224919..1225383) Treponema succinifaciens DSM 2489 10431254 YP_004365357.1 CDS Tresu_1148 NC_015385.1 1225604 1226404 D KEGG: tpp:TPASS_0185 signal peptidase I; SPTR: Signal peptidase I (Sip); TIGRFAM: signal peptidase I, bacterial type; hypothetical protein 1225604..1226404 Treponema succinifaciens DSM 2489 10431255 YP_004365358.1 CDS Tresu_1149 NC_015385.1 1226411 1227583 D COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR004559:IPR006638:IPR007197:IPR010723; KEGG: cob:COB47_1000 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: ATPase AAA oxygen-independent coproporphyrinogen III oxidase; oxygen-independent coproporphyrinogen III oxidase 1226411..1227583 Treponema succinifaciens DSM 2489 10431256 YP_004365359.1 CDS Tresu_1150 NC_015385.1 1227868 1229787 D COGs: COG1154 deoxyxylulose-5-phosphate synthase; HAMAP: deoxyxylulose-5-phosphate synthase; InterPro IPR005477:IPR005475:IPR005476; KEGG: tde:TDE1910 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SMART: Transketolase-like, pyrimidine-binding domain; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase 1227868..1229787 Treponema succinifaciens DSM 2489 10431257 YP_004365360.1 CDS Tresu_1151 NC_015385.1 1229784 1230614 D COGs: COG0294 dihydropteroate synthase; InterPro IPR006390:IPR000489; KEGG: sta:STHERM_c18380 dihydropteroate synthase; PFAM: Pterin-binding; PRIAM: dihydropteroate synthase; SPTR: dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase; dihydropteroate synthase 1229784..1230614 Treponema succinifaciens DSM 2489 10431258 YP_004365361.1 CDS Tresu_1152 NC_015385.1 1230601 1231428 D COGs: COG1624 conserved hypothetical protein; InterPro IPR014046:IPR003390; KEGG: tde:TDE1909 hypothetical protein; PFAM: DNA integrity scanning protein, DisA, N-terminal; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00159; PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: TIGR00159 family protein; hypothetical protein 1230601..1231428 Treponema succinifaciens DSM 2489 10431259 YP_004365362.1 CDS Tresu_1153 NC_015385.1 1231394 1232434 D InterPro IPR012505; KEGG: tde:TDE1908 hypothetical protein; PFAM: YbbR-like; SPTR: Putative uncharacterized protein; PFAM: YbbR-like protein; hypothetical protein 1231394..1232434 Treponema succinifaciens DSM 2489 10431260 YP_004365363.1 CDS Tresu_1154 NC_015385.1 1232443 1232826 D COGs: COG0736 phosphopantetheinyl transferase (holo-ACP synthase); HAMAP: Holo-[acyl carrier protein] synthase; InterPro IPR002582:IPR004568:IPR008278; KEGG: cbi:CLJ_B3704 holo-(acyl-carrier-protein) synthase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: Holo-[acyl-carrier-protein] synthase; TIGRFAM: phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-[acyl-carrier-protein] synthase; holo-ACP synthase 1232443..1232826 Treponema succinifaciens DSM 2489 10431261 YP_004365364.1 CDS Tresu_1155 NC_015385.1 1232855 1233763 D COGs: COG1655 conserved hypothetical protein; InterPro IPR018708; KEGG: tde:TDE2274 hypothetical protein; PFAM: protein of unknown function DUF2225; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2225); hypothetical protein 1232855..1233763 Treponema succinifaciens DSM 2489 10431262 YP_004365365.1 CDS Tresu_1156 NC_015385.1 1233756 1234541 D COGs: COG0101 Pseudouridylate synthase; HAMAP: Pseudouridine synthase I, TruA; InterPro IPR001406:IPR020097; KEGG: tde:TDE2275 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; PRIAM: tRNA-pseudouridine synthase I; SPTR: tRNA pseudouridine synthase A; TIGRFAM: Pseudouridine synthase I, TruA; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I; tRNA pseudouridine synthase A 1233756..1234541 Treponema succinifaciens DSM 2489 10431263 YP_004365366.1 CDS Tresu_1157 NC_015385.1 1234592 1235806 D KEGG: tde:TDE0857 ATPase AAA lipoprotein; SPTR: lipoprotein, ATPase AAA; lipoprotein 1234592..1235806 Treponema succinifaciens DSM 2489 10431264 YP_004365367.1 CDS Tresu_1158 NC_015385.1 1235822 1236388 D hypothetical protein 1235822..1236388 Treponema succinifaciens DSM 2489 10431265 YP_004365368.1 CDS Tresu_1159 NC_015385.1 1236443 1236883 D KEGG: ssm:Spirs_2621 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1236443..1236883 Treponema succinifaciens DSM 2489 10431266 YP_004365369.1 CDS Tresu_1160 NC_015385.1 1236892 1237311 D InterPro IPR000086; KEGG: sth:STH2150 MutT-like protein; PFAM: NUDIX hydrolase domain; SPTR: CTP pyrophosphohydrolase; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein; NUDIX hydrolase 1236892..1237311 Treponema succinifaciens DSM 2489 10431267 YP_004365370.1 CDS Tresu_1161 NC_015385.1 1237308 1237694 D hypothetical protein 1237308..1237694 Treponema succinifaciens DSM 2489 10431268 YP_004365371.1 CDS Tresu_R0025 NC_015385.1 1237681 1238010 D InterPro IPR001387; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; tmRNA as predicted by Rfam (RF00023), score 136.35; PFAM: Helix-turn-helix; hypothetical protein 1237681..1238010 Treponema succinifaciens DSM 2489 10431269 YP_004365372.1 CDS Tresu_1163 NC_015385.1 1238469 1239020 R KEGG: tde:TDE1121 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; hypothetical protein complement(1238469..1239020) Treponema succinifaciens DSM 2489 10431270 YP_004365373.1 CDS Tresu_1164 NC_015385.1 1239032 1239370 R COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR003658:IPR002645; KEGG: tde:TDE1122 anti-anti-sigma factor; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; anti-sigma-factor antagonist complement(1239032..1239370) Treponema succinifaciens DSM 2489 10431271 YP_004365374.1 CDS Tresu_1165 NC_015385.1 1239400 1241100 R COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003018:IPR001932:IPR010822; KEGG: tde:TDE1123 sigma factor regulatory protein, ATPase AAA; PFAM: Sporulation stage II, protein E C-terminal; GAF; SMART: protein phosphatase 2C-like; GAF; SPTR: Putative sigma factor regulatory protein; PFAM: GAF domain; Stage II sporulation protein E (SpoIIE); protein serine/threonine phosphatase with GAF(s) sensor(s) complement(1239400..1241100) Treponema succinifaciens DSM 2489 10431272 YP_004365375.1 CDS Tresu_1166 NC_015385.1 1241291 1242211 R KEGG: ssm:Spirs_2366 hypothetical protein; SPTR: Transcriptional regulator; hypothetical protein complement(1241291..1242211) Treponema succinifaciens DSM 2489 10431273 YP_004365376.1 CDS Tresu_1167 NC_015385.1 1242186 1242956 R InterPro IPR004843; KEGG: ssm:Spirs_2365 hypothetical protein; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase; metallophosphoesterase complement(1242186..1242956) Treponema succinifaciens DSM 2489 10431274 YP_004365377.1 CDS Tresu_1168 NC_015385.1 1242953 1244326 R InterPro IPR019734:IPR001440; KEGG: ssm:Spirs_2364 restriction endonuclease; PFAM: Tetratricopeptide TPR-1; SPTR: Restriction endonuclease; PFAM: Restriction endonuclease; Putative mitochondrial outer membrane protein; hypothetical protein complement(1242953..1244326) Treponema succinifaciens DSM 2489 10431275 YP_004365378.1 CDS Tresu_1169 NC_015385.1 1244460 1245557 D InterPro IPR019734:IPR001440; KEGG: tpa:TP0470 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; hypothetical protein 1244460..1245557 Treponema succinifaciens DSM 2489 10431276 YP_004365379.1 CDS Tresu_1170 NC_015385.1 1245532 1248936 D InterPro IPR019734:IPR013105:IPR001440; KEGG: tde:TDE1127 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SPTR: TPR domain protein; PFAM: Tetratricopeptide repeat; hypothetical protein 1245532..1248936 Treponema succinifaciens DSM 2489 10431277 YP_004365380.1 CDS Tresu_1171 NC_015385.1 1248957 1250795 R COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); HAMAP: DNA mismatch repair protein, MutL; InterProIPR014763:IPR014790:IPR020667:IPR003594:IPR 013507; KEGG: tpp:TPASS_0303 DNA mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain; SMART: MutL, C-terminal, dimerisation; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein, N-terminal; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL; DNA mismatch repair protein mutL complement(1248957..1250795) Treponema succinifaciens DSM 2489 10431278 YP_004365381.1 CDS Tresu_1172 NC_015385.1 1250792 1251091 R HAMAP: Exonuclease VII, small subunit; InterPro IPR003761; KEGG: tde:TDE2066 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; SPTR: exodeoxyribonuclease 7 small subunit; PFAM: Exonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease 7 small subunit complement(1250792..1251091) Treponema succinifaciens DSM 2489 10431279 YP_004365382.1 CDS Tresu_1173 NC_015385.1 1251103 1252311 R COGs: COG1570 Exonuclease VII large subunit; HAMAP: Exonuclease VII, large subunit; InterPro IPR003753:IPR004365:IPR020579; KEGG: tde:TDE1017 exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: exodeoxyribonuclease VII; SPTR: exodeoxyribonuclease 7 large subunit; TIGRFAM: Exonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; OB-fold nucleic acid binding domain; TIGRFAM: exodeoxyribonuclease VII, large subunit; exodeoxyribonuclease 7 large subunit complement(1251103..1252311) Treponema succinifaciens DSM 2489 10431280 YP_004365383.1 CDS Tresu_1174 NC_015385.1 1252375 1253997 D InterPro IPR007197; KEGG: tde:TDE1919 hypothetical protein; PFAM: Radical SAM; SPTR: Conserved domain protein; Radical SAM domain protein 1252375..1253997 Treponema succinifaciens DSM 2489 10431281 YP_004365384.1 CDS Tresu_1175 NC_015385.1 1253972 1254925 D KEGG: tde:TDE1918 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1253972..1254925 Treponema succinifaciens DSM 2489 10431282 YP_004365385.1 CDS Tresu_1176 NC_015385.1 1254940 1257474 D COGs: COG1861 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase homolog; InterPro IPR003329:IPR013217; KEGG: tde:TDE1917 cytidyltransferase-like protein; PFAM: acylneuraminate cytidylyltransferase; methyltransferase type 12; SPTR: Cytidylyltransferase domain protein; PFAM: methyltransferase domain; Cytidylyltransferase; acylneuraminate cytidylyltransferase 1254940..1257474 Treponema succinifaciens DSM 2489 10431283 YP_004365386.1 CDS Tresu_1177 NC_015385.1 1257510 1259078 D COGs: COG0439 Biotin carboxylase; InterPro IPR003806; KEGG: tde:TDE2209 CarB family protein; PFAM: ATP-grasp fold, DUF201-type; SPTR: CarB family protein; PFAM: ATP-grasp domain; ATP-grasp fold domain-containing protein 1257510..1259078 Treponema succinifaciens DSM 2489 10431284 YP_004365387.1 CDS Tresu_1178 NC_015385.1 1259075 1260106 D COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: tde:TDE1714 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase, family 3; PFAM: N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 1259075..1260106 Treponema succinifaciens DSM 2489 10431285 YP_004365388.1 CDS Tresu_1179 NC_015385.1 1260109 1260573 D KEGG: ssm:Spirs_2927 lipoprotein LpqB, GerMN domain protein; SPTR: Putative uncharacterized protein; PFAM: Sporulation and spore germination; hypothetical protein 1260109..1260573 Treponema succinifaciens DSM 2489 10431286 YP_004365389.1 CDS Tresu_1180 NC_015385.1 1260708 1261793 D InterPro IPR006714; KEGG: tde:TDE1712 flagellar filament outer layer protein; PFAM: flagellar filament outer layer protein FlaA; SPTR: flagellar filament outer layer protein; PFAM: flagellar filament outer layer protein Flaa; flagellar filament outer layer protein FlaA 1260708..1261793 Treponema succinifaciens DSM 2489 10431287 YP_004365390.1 CDS Tresu_1181 NC_015385.1 1261889 1263142 D COGs: COG2357 conserved hypothetical protein; InterPro IPR007685:IPR019734:IPR001440; KEGG: tde:TDE1711 RelA/SpoT domain-containing protein; PFAM: RelA/SpoT; Tetratricopeptide TPR-1; SMART: RelA/SpoT; Tetratricopeptide repeat; SPTR: RelA/SpoT domain protein; PFAM: Region found in RelA / SpoT proteins; Tetratricopeptide repeat; RelA/SpoT domain-containing protein 1261889..1263142 Treponema succinifaciens DSM 2489 10431288 YP_004365391.1 CDS Tresu_1182 NC_015385.1 1263533 1264735 R COGs: COG2985 permease; InterPro IPR006512; KEGG: toc:Toce_1835 YidE/YbjL duplication; PFAM: YidE/YbjL duplication; SPTR: Predicted permease; TIGRFAM: YidE/YbjL duplication; PFAM: Predicted Permease Membrane Region; TIGRFAM: AspT/YidE/YbjL antiporter duplication domain; YidE/YbjL duplication complement(1263533..1264735) Treponema succinifaciens DSM 2489 10431290 YP_004365392.1 CDS Tresu_1183 NC_015385.1 1265465 1266472 R COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: str:Sterm_3357 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: D-lactate dehydrogenase; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; D-lactate dehydrogenase complement(1265465..1266472) Treponema succinifaciens DSM 2489 10431291 YP_004365393.1 CDS Tresu_1184 NC_015385.1 1266786 1266896 D KEGG: tde:TDE0472 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1266786..1266896 Treponema succinifaciens DSM 2489 10431292 YP_004365394.1 CDS Tresu_1186 NC_015385.1 1268265 1269176 R KEGG: fjo:Fjoh_0919 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1268265..1269176) Treponema succinifaciens DSM 2489 10431294 YP_004365395.1 CDS Tresu_1187 NC_015385.1 1269193 1269522 R hypothetical protein complement(1269193..1269522) Treponema succinifaciens DSM 2489 10431295 YP_004365396.1 CDS Tresu_1188 NC_015385.1 1270972 1271268 D KEGG: tde:TDE0474 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1270972..1271268 Treponema succinifaciens DSM 2489 10431296 YP_004365397.1 CDS Tresu_1189 NC_015385.1 1271338 1271940 D COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563:IPR004039; KEGG: bpb:bpr_I0363 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; Rubredoxin-type Fe(Cys)4 protein; SMART: Flavin reductase-like, FMN-binding; SPTR: Putative uncharacterized protein; PFAM: Flavin reductase like domain; flavin reductase domain-containing FMN-binding protein 1271338..1271940 Treponema succinifaciens DSM 2489 10431297 YP_004365398.1 CDS Tresu_1191 NC_015385.1 1272819 1273142 D KEGG: dly:Dehly_1177 XRE family transcriptional regulator; SPTR: Predicted transcriptional regulator; PFAM: Helix-turn-helix; hypothetical protein 1272819..1273142 Treponema succinifaciens DSM 2489 10431300 YP_004365399.1 CDS Tresu_1192 NC_015385.1 1273155 1274963 D COGs: COG3472 conserved hypothetical protein; InterPro IPR004919:IPR018651; KEGG: sti:Sthe_1561 protein of unknown function DUF262; PFAM: protein of unknown function DUF2081; Domain of unknown function DUF262; SPTR: Uncharacterized conserved protein; PFAM: Uncharacterized conserved protein (DUF2081); protein of unknown function DUF262; hypothetical protein 1273155..1274963 Treponema succinifaciens DSM 2489 10431301 YP_004365400.1 CDS Tresu_1193 NC_015385.1 1274983 1277892 D InterPro IPR006935; KEGG: pth:PTH_1522 hypothetical protein; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SPTR: Putative uncharacterized protein; PFAM: Type III restriction enzyme, res subunit; type III restriction protein res subunit 1274983..1277892 Treponema succinifaciens DSM 2489 10431302 YP_004365401.1 CDS Tresu_1194 NC_015385.1 1277893 1278945 D COGs: COG3943 Virulence protein; KEGG: eel:EUBELI_01526 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1277893..1278945 Treponema succinifaciens DSM 2489 10431303 YP_004365402.1 CDS Tresu_1195 NC_015385.1 1278935 1280950 D COGs: COG2189 adenine specific DNA methylase Mod; InterPro IPR002941; KEGG: pth:PTH_1523 adenine specific DNA methylase Mod; PFAM: DNA methylase N-4/N-6; SPTR: Putative uncharacterized protein; PFAM: DNA methylase; DNA methylase N-4/N-6 domain-containing protein 1278935..1280950 Treponema succinifaciens DSM 2489 10431304 YP_004365403.1 CDS Tresu_1196 NC_015385.1 1280966 1282756 D KEGG: dae:Dtox_3811 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1280966..1282756 Treponema succinifaciens DSM 2489 10431305 YP_004365404.1 CDS Tresu_1199 NC_015385.1 1284044 1285648 D COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: ssm:Spirs_3800 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: ATP-dependent RNA helicase DbpA; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; DEAD/DEAH box helicase 1284044..1285648 Treponema succinifaciens DSM 2489 10431308 YP_004365405.1 CDS Tresu_1200 NC_015385.1 1285663 1287303 D COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: tde:TDE1592 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter; ABC transporter 1285663..1287303 Treponema succinifaciens DSM 2489 10431309 YP_004365406.1 CDS Tresu_1201 NC_015385.1 1287374 1289326 R KEGG: tde:TDE2184 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1287374..1289326) Treponema succinifaciens DSM 2489 10431310 YP_004365407.1 CDS Tresu_1202 NC_015385.1 1289336 1290448 R COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR004387:IPR001478:IPR008915; KEGG: tye:THEYE_A0225 membrane-associated zinc metalloprotease, ATPase AAA; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF; SPTR: Membrane-associated zinc metalloprotease, ATPase AAA; TIGRFAM: peptidase M50, ATPase AAA membrane-associated zinc metallopeptidase; PFAM: peptidase family M50; TIGRFAM: RIP metalloprotease RseP; membrane-associated zinc metalloprotease complement(1289336..1290448) Treponema succinifaciens DSM 2489 10431311 YP_004365408.1 CDS Tresu_1203 NC_015385.1 1290445 1291560 R COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821:IPR013512:IPR013644; KEGG: tde:TDE2342 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1290445..1291560) Treponema succinifaciens DSM 2489 10431312 YP_004365409.1 CDS Tresu_1204 NC_015385.1 1291560 1292441 R COGs: COG4589 CDP-diglyceride synthetase/phosphatidate cytidylyltransferase; InterPro IPR000374; KEGG: tde:TDE2343 phosphatidate cytidylyltransferase; PFAM: Phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family; phosphatidate cytidylyltransferase complement(1291560..1292441) Treponema succinifaciens DSM 2489 10431313 YP_004365410.1 CDS Tresu_1205 NC_015385.1 1292438 1293151 R COGs: COG0020 Undecaprenyl pyrophosphate synthase; HAMAP:Di-trans-poly-cis-decaprenylcistransferase-li ke; InterPro IPR001441; KEGG: tde:TDE2344 undecaprenyl diphosphate synthase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Undecaprenyl pyrophosphate synthase; TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; UDP pyrophosphate synthase complement(1292438..1293151) Treponema succinifaciens DSM 2489 10431314 YP_004365411.1 CDS Tresu_1206 NC_015385.1 1293157 1293696 R COGs: COG0233 ribosome recycling factor; HAMAP: ribosome recycling factor, bacterial-like; InterPro IPR002661:IPR015998; KEGG: ssm:Spirs_2866 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: ribosome-recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; TIGRFAM: ribosome recycling factor; ribosome-recycling factor complement(1293157..1293696) Treponema succinifaciens DSM 2489 10431315 YP_004365412.1 CDS Tresu_1207 NC_015385.1 1293788 1294624 R COGs: COG0264 Translation elongation factor Ts; HAMAP: Translation elongation factor EFTs/EF1B; InterPro IPR001816:IPR000449:IPR014039; KEGG: tde:TDE2346 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; SPTR: Elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts; elongation factor Ts complement(1293788..1294624) Treponema succinifaciens DSM 2489 10431316 YP_004365413.1 CDS Tresu_1208 NC_015385.1 1294644 1295510 R COGs: COG0052 ribosomal protein S2; InterPro IPR005706:IPR001865; KEGG: tde:TDE2347 30S ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; 30S ribosomal protein S2 complement(1294644..1295510) Treponema succinifaciens DSM 2489 10431317 YP_004365414.1 CDS Tresu_1209 NC_015385.1 1295646 1296236 R COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; HAMAP: Maf-like protein; InterPro IPR003697; KEGG: pth:PTH_0815 nucleotide-binding protein; PFAM: Maf-like protein; SPTR: Maf-like protein TREVI0001_0108; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; TIGRFAM: MAF protein; septum formation protein Maf complement(1295646..1296236) Treponema succinifaciens DSM 2489 10431318 YP_004365415.1 CDS Tresu_1210 NC_015385.1 1296521 1297258 R KEGG: tde:TDE2349 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1296521..1297258) Treponema succinifaciens DSM 2489 10431320 YP_004365416.1 CDS Tresu_1211 NC_015385.1 1297328 1297924 R KEGG: tde:TDE2350 ATPase AAA lipoprotein; SPTR: Putative lipoprotein; lipoprotein complement(1297328..1297924) Treponema succinifaciens DSM 2489 10431321 YP_004365417.1 CDS Tresu_1212 NC_015385.1 1298240 1298737 D COGs: COG0669 phosphopantetheine adenylyltransferase; HAMAP: Coenzyme A biosynthesis protein; InterPro IPR004821:IPR001980:IPR004820; KEGG: tde:TDE1375 pantetheine-phosphate adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain; phosphopantetheine adenylyltransferase 1298240..1298737 Treponema succinifaciens DSM 2489 10431322 YP_004365418.1 CDS Tresu_1213 NC_015385.1 1298886 1299074 D COGs: COG0333 ribosomal protein L32; HAMAP: ribosomal protein L32p; InterPro IPR002677; KEGG: tde:TDE1025 50S ribosomal protein L32; PFAM: ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32p; PFAM: ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; 50S ribosomal protein L32 1298886..1299074 Treponema succinifaciens DSM 2489 10431323 YP_004365419.1 CDS Tresu_1214 NC_015385.1 1299089 1299325 D COGs: COG0236 acyl carrier protein; HAMAP: acyl carrier protein (ACP); InterPro IPR003231:IPR006163; KEGG: tde:TDE1026 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: acyl carrier protein; TIGRFAM: acyl carrier protein (ACP); PFAM: phosphopantetheine attachment site; TIGRFAM: acyl carrier protein; acyl carrier protein 1299089..1299325 Treponema succinifaciens DSM 2489 10431324 YP_004365420.1 CDS Tresu_1215 NC_015385.1 1299479 1300225 D COGs: COG0571 dsRNA-specific ribonuclease; HAMAP: ribonuclease III, bacterial; InterPro IPR011907:IPR000999:IPR001159; KEGG: ssm:Spirs_1889 ribonuclease III; PFAM: ribonuclease III; Double-stranded RNA-binding; PRIAM: ribonuclease III; SMART: ribonuclease III; Double-stranded RNA-binding; SPTR: ribonuclease 3; TIGRFAM: ribonuclease III, bacterial; PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial; ribonuclease 3 1299479..1300225 Treponema succinifaciens DSM 2489 10431325 YP_004365421.1 CDS Tresu_1216 NC_015385.1 1300232 1301635 R COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646:IPR006674; KEGG: tde:TDE1033 polyA polymerase family protein; PFAM: poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain; SPTR: polyA polymerase family protein; PFAM: HD domain; poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(1300232..1301635) Treponema succinifaciens DSM 2489 10431326 YP_004365422.1 CDS Tresu_1217 NC_015385.1 1301676 1302362 D COGs: COG1564 Thiamine pyrophosphokinase; InterPro IPR006282:IPR007371; KEGG: ssm:Spirs_1940 thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic domain; SPTR: Thiamine pyrophosphokinase; TIGRFAM: Thiamin pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase; thiamine pyrophosphokinase 1301676..1302362 Treponema succinifaciens DSM 2489 10431327 YP_004365423.1 CDS Tresu_1218 NC_015385.1 1302359 1302715 R hypothetical protein complement(1302359..1302715) Treponema succinifaciens DSM 2489 10431328 YP_004365424.1 CDS Tresu_1219 NC_015385.1 1302792 1303622 D KEGG: ssm:Spirs_1943 hypothetical protein; SPTR: Putative lipoprotein; hypothetical protein 1302792..1303622 Treponema succinifaciens DSM 2489 10431329 YP_004365425.1 CDS Tresu_1220 NC_015385.1 1303639 1304019 D COGs: COG4401 Chorismate mutase; InterPro IPR008243; KEGG: tde:TDE1502 chorismate mutase; PFAM: Chorismate mutase, AroH class; SPTR: Chorismate mutase; TIGRFAM: Chorismate mutase, AroH class; PFAM: Chorismate mutase type I; TIGRFAM: monofunctional chorismate mutase, gram positive type, clade 1; chorismate mutase 1303639..1304019 Treponema succinifaciens DSM 2489 10431330 YP_004365426.1 CDS Tresu_1221 NC_015385.1 1303976 1305598 D COGs: COG0297 glycogen synthase; InterPro IPR013534:IPR001296; KEGG: dak:DaAHT2_2094 starch synthase catalytic domain protein; PFAM: Starch synthase, catalytic domain; glycosyl transferase, group 1; PRIAM: Starch synthase; SPTR: Starch synthase catalytic domain protein; PFAM: Starch synthase catalytic domain; glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type; starch synthase 1303976..1305598 Treponema succinifaciens DSM 2489 10431331 YP_004365427.1 CDS Tresu_1222 NC_015385.1 1305676 1307379 R InterPro IPR007926; KEGG: tde:TDE2699 antigen, ATPase AAA; PFAM: Borrelia P83100; SPTR: Antigen, ATPase AAA; PFAM: Borrelia P83/100 protein; P83100 family protein complement(1305676..1307379) Treponema succinifaciens DSM 2489 10431332 YP_004365428.1 CDS Tresu_1223 NC_015385.1 1307547 1309280 R KEGG: tde:TDE2698 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1307547..1309280) Treponema succinifaciens DSM 2489 10431333 YP_004365429.1 CDS Tresu_1224 NC_015385.1 1309277 1310494 R COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR002792:IPR010280; KEGG: tde:TDE2619 RNA methyltransferase; PFAM: (Uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM; SPTR: Uncharacterized RNA methyltransferase TDE_2619; PFAM: tRNA (Uracil-5-)-methyltransferase; TRAM domain; (uracil-5)-methyltransferase complement(1309277..1310494) Treponema succinifaciens DSM 2489 10431334 YP_004365430.1 CDS Tresu_1225 NC_015385.1 1310573 1311226 R COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006402:IPR005834; KEGG: bpb:bpr_I0859 HAD superfamily hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Hydrolase HAD superfamily; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD-superfamily hydrolase complement(1310573..1311226) Treponema succinifaciens DSM 2489 10431335 YP_004365431.1 CDS Tresu_1226 NC_015385.1 1311431 1311646 D COGs: COG0254 ribosomal protein L31; HAMAP: ribosomal protein L31; InterPro IPR002150; KEGG: ssm:Spirs_3178 ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; TIGRFAM: ribosomal protein L31; 50S ribosomal protein L31 1311431..1311646 Treponema succinifaciens DSM 2489 10431336 YP_004365432.1 CDS Tresu_1227 NC_015385.1 1311734 1313188 D KEGG: ssm:Spirs_4282 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1311734..1313188 Treponema succinifaciens DSM 2489 10431337 YP_004365433.1 CDS Tresu_1228 NC_015385.1 1313175 1314287 R COGs: COG1092 SAM-dependent methyltransferase; KEGG: tde:TDE1913 hypothetical protein; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: Putative uncharacterized protein; PFAM: S-adenosylmethionine-dependent methyltransferase; rRNA (guanine-N(2)-)-methyltransferase complement(1313175..1314287) Treponema succinifaciens DSM 2489 10431338 YP_004365434.1 CDS Tresu_1229 NC_015385.1 1314307 1314861 R COGs: COG1247 Sortase and related acyltransferase; InterPro IPR000182; KEGG: hut:Huta_1133 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; PRIAM: Phosphinothricin acetyltransferase; SPTR: Sortase and related acyltransferases; PFAM: Acetyltransferase (GNAT) family; Phosphinothricin acetyltransferase complement(1314307..1314861) Treponema succinifaciens DSM 2489 10431339 YP_004365435.1 CDS Tresu_1230 NC_015385.1 1314868 1315905 R COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: ere:EUBREC_2311 muramoyltetrapeptide carboxypeptidase; PFAM: peptidase S66, LD-carboxypeptidase A; SPTR: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; PFAM: LD-carboxypeptidase; peptidase U61 LD-carboxypeptidase A complement(1314868..1315905) Treponema succinifaciens DSM 2489 10431340 YP_004365436.1 CDS Tresu_1231 NC_015385.1 1315962 1316138 R hypothetical protein complement(1315962..1316138) Treponema succinifaciens DSM 2489 10431341 YP_004365437.1 CDS Tresu_1232 NC_015385.1 1316417 1317298 D hypothetical protein 1316417..1317298 Treponema succinifaciens DSM 2489 10431343 YP_004365438.1 CDS Tresu_1233 NC_015385.1 1317658 1318002 R InterPro IPR001387; KEGG: gca:Galf_1463 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix; hypothetical protein complement(1317658..1318002) Treponema succinifaciens DSM 2489 10431346 YP_004365439.1 CDS Tresu_1234 NC_015385.1 1318187 1318465 R COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: ere:EUBREC_0527 DNA-binding protein HU; PFAM: histone-like bacterial DNA-binding protein; SMART: histone-like bacterial DNA-binding protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial DNA-binding protein; histone family protein DNA-binding protein complement(1318187..1318465) Treponema succinifaciens DSM 2489 10431347 YP_004365440.1 CDS Tresu_1235 NC_015385.1 1318721 1319011 D COGs: COG0360 ribosomal protein S6; HAMAP: ribosomal protein S6, plastid/chloroplast; InterPro IPR000529:IPR020814; KEGG: tde:TDE1678 30S ribosomal protein S6; PFAM: ribosomal protein S6; SPTR: 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; TIGRFAM: ribosomal protein S6; 30S ribosomal protein S6 1318721..1319011 Treponema succinifaciens DSM 2489 10431348 YP_004365441.1 CDS Tresu_1236 NC_015385.1 1319035 1319523 D COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: ssm:Spirs_2878 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); single-strand binding protein 1319035..1319523 Treponema succinifaciens DSM 2489 10431349 YP_004365442.1 CDS Tresu_1237 NC_015385.1 1319569 1319883 D COGs: COG0238 ribosomal protein S18; HAMAP: ribosomal protein S18; InterPro IPR001648; KEGG: tde:TDE1676 30S ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; TIGRFAM: ribosomal protein S18; 30S ribosomal protein S18 1319569..1319883 Treponema succinifaciens DSM 2489 10431350 YP_004365443.1 CDS Tresu_1238 NC_015385.1 1319951 1320472 D COGs: COG0359 ribosomal protein L9; HAMAP: ribosomal protein L9, bacteria/chloroplast; InterPro IPR020594:IPR020070:IPR020069; KEGG: tde:TDE1675 50S ribosomal protein L9; PFAM: ribosomal protein L9, N-terminal; ribosomal protein L9, C-terminal; SPTR: 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9, bacteria/chloroplast; PFAM: ribosomal protein L9, N-terminal domain; ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9; 50S ribosomal protein L9 1319951..1320472 Treponema succinifaciens DSM 2489 10431351 YP_004365444.1 CDS Tresu_1239 NC_015385.1 1320617 1321945 D COGs: COG0305 Replicative DNA helicase; InterPro IPR007692:IPR003593:IPR007693:IPR007694; KEGG: ssm:Spirs_2874 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase; replicative DNA helicase 1320617..1321945 Treponema succinifaciens DSM 2489 10431352 YP_004365445.1 CDS Tresu_1240 NC_015385.1 1322019 1322963 D COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; InterPro IPR001279; KEGG: tde:TDE1541 metallo-beta-lactamase family protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like; SPTR: Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein 1322019..1322963 Treponema succinifaciens DSM 2489 10431353 YP_004365446.1 CDS Tresu_1241 NC_015385.1 1322960 1324015 D COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: tde:TDE1543 hypothetical protein; PFAM: Uncharacterised protein family UPF0755; SPTR: Aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family; aminodeoxychorismate lyase 1322960..1324015 Treponema succinifaciens DSM 2489 10431354 YP_004365447.1 CDS Tresu_1242 NC_015385.1 1324022 1325824 D COGs: COG0358 DNA primase; InterPro IPR006295:IPR002694:IPR006171:IPR013264; KEGG: tde:TDE1345 DNA primase; SPTR: DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core; DNA primase 1324022..1325824 Treponema succinifaciens DSM 2489 10431355 YP_004365448.1 CDS Tresu_1243 NC_015385.1 1325828 1327795 D COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR014284:IPR012760:IPR007127:IPR009042:IPR 007627:IPR007624:IPR007630; KEGG: ssm:Spirs_2078 RNA polymerase, sigma 70 subunit, RpoD subfamily; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 factor, region 1.1; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain; RpoD subfamily RNA polymerase sigma-70 subunit 1325828..1327795 Treponema succinifaciens DSM 2489 10431356 YP_004365449.1 CDS Tresu_1244 NC_015385.1 1327875 1328738 D COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: ssm:Spirs_2077 protein of unknown function DUF164; PFAM: protein of unknown function DUF164; SPTR: Putative uncharacterized protein; PFAM: Putative zinc ribbon domain; hypothetical protein 1327875..1328738 Treponema succinifaciens DSM 2489 10431357 YP_004365450.1 CDS Tresu_1245 NC_015385.1 1329202 1330164 D InterPro IPR019734:IPR001440:IPR013105; KEGG: tde:TDE1348 TPR domain-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR domain protein; hypothetical protein 1329202..1330164 Treponema succinifaciens DSM 2489 10431359 YP_004365451.1 CDS Tresu_1246 NC_015385.1 1330202 1331254 D COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: tpp:TPASS_0497 rod shape-determining protein MreB; PFAM: Cell shape determining protein MreB/Mrl; SPTR: Rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family; MreB/Mrl family cell shape determining protein 1330202..1331254 Treponema succinifaciens DSM 2489 10431360 YP_004365452.1 CDS Tresu_1247 NC_015385.1 1331275 1332153 D COGs: COG1792 Cell shape-determining protein; InterPro IPR005223:IPR007221; KEGG: tpp:TPASS_0498 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; rod shape-determining protein MreC 1331275..1332153 Treponema succinifaciens DSM 2489 10431361 YP_004365453.1 CDS Tresu_1248 NC_015385.1 1332174 1332686 D InterPro IPR007227; KEGG: tde:TDE1351 rod shape-determining protein MreD; SPTR: Rod shape-determining protein MreD; TIGRFAM: Cell shape-determining protein MreD; PFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; rod shape-determining protein MreD 1332174..1332686 Treponema succinifaciens DSM 2489 10431362 YP_004365454.1 CDS Tresu_1249 NC_015385.1 1332683 1334596 D COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR017790:IPR005311:IPR001460; KEGG: tde:TDE1352 penicillin-binding protein; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein; TIGRFAM: Penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding protein dimerisation domain; TIGRFAM: penicillin-binding protein 2; penicillin-binding protein 2 1332683..1334596 Treponema succinifaciens DSM 2489 10431363 YP_004365455.1 CDS Tresu_1250 NC_015385.1 1334593 1335912 D COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR011923:IPR001182; KEGG: tde:TDE1353 rod shape-determining protein RodA; PFAM: Cell cycle protein; SPTR: Rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; rod shape-determining protein RodA 1334593..1335912 Treponema succinifaciens DSM 2489 10431364 YP_004365456.1 CDS Tresu_1251 NC_015385.1 1335909 1338626 D COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR018768; KEGG: ssm:Spirs_2070 radical SAM domain protein; PFAM: protein of unknown function DUF2344; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2344); Radical SAM superfamily; TIGRFAM: radical SAM-linked protein; hypothetical protein 1335909..1338626 Treponema succinifaciens DSM 2489 10431365 YP_004365457.1 CDS Tresu_1252 NC_015385.1 1338743 1342483 R COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR004576:IPR014001:IPR001650:IPR003711:IPR 011545:IPR005118; KEGG: tde:TDE1287 transcription-repair coupling factor; PFAM: Transcription-repair-coupling factor domain; Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: Transcription-repair coupling factor; TIGRFAM: Transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd); transcription-repair coupling factor complement(1338743..1342483) Treponema succinifaciens DSM 2489 10431366 YP_004365458.1 CDS Tresu_1253 NC_015385.1 1342592 1343569 D KEGG: tde:TDE1089 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1342592..1343569 Treponema succinifaciens DSM 2489 10431367 YP_004365459.1 CDS Tresu_1254 NC_015385.1 1343569 1343958 D KEGG: tde:TDE2660 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1343569..1343958 Treponema succinifaciens DSM 2489 10431368 YP_004365460.1 CDS Tresu_1255 NC_015385.1 1344124 1344843 R COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR006439:IPR005834; KEGG: mba:Mbar_A0557 haloacid dehalogenase-like hydrolase family protein; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase-like hydrolase family protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD-superfamily hydrolase complement(1344124..1344843) Treponema succinifaciens DSM 2489 10431370 YP_004365461.1 CDS Tresu_1256 NC_015385.1 1345240 1346391 D COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterPro IPR000821:IPR001608:IPR011079; KEGG: tde:TDE1095 alanine racemase; PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; PRIAM: Alanine racemase; SPTR: Alanine racemase; TIGRFAM: Alanine racemase; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase; alanine racemase 1345240..1346391 Treponema succinifaciens DSM 2489 10431371 YP_004365462.1 CDS Tresu_1257 NC_015385.1 1346385 1347818 R COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR001645:IPR013221; KEGG: tde:TDE1084 folylpolyglutamate synthetase, ATPase AAA; PFAM: Mur ligase, central; PRIAM: Tetrahydrofolate synthase; SPTR: Folylpolyglutamate synthetase, ATPase AAA; TIGRFAM: Folylpolyglutamate synthetase; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(1346385..1347818) Treponema succinifaciens DSM 2489 10431372 YP_004365463.1 CDS Tresu_1258 NC_015385.1 1347815 1348663 R hypothetical protein complement(1347815..1348663) Treponema succinifaciens DSM 2489 10431373 YP_004365464.1 CDS Tresu_1259 NC_015385.1 1348660 1350891 R COGs: COG3225 ABC transporter involved in gliding motility auxiliary component; InterPro IPR019196; KEGG: tde:TDE2112 hypothetical protein; PFAM: ABC-type uncharacterised transport system; SPTR: Putative uncharacterized protein; PFAM: ABC transporter; ABC transporter complement(1348660..1350891) Treponema succinifaciens DSM 2489 10431374 YP_004365465.1 CDS Tresu_1260 NC_015385.1 1350888 1351607 R COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: btu:BT0754 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter; sulfate-transporting ATPase complement(1350888..1351607) Treponema succinifaciens DSM 2489 10431375 YP_004365466.1 CDS Tresu_1261 NC_015385.1 1351597 1352523 R COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; HAMAP: ribonuclease Z; InterPro IPR013471:IPR001279; KEGG: tde:TDE1951 ribonuclease Z; PFAM: beta-lactamase-like; SMART: beta-lactamase-like; SPTR: ribonuclease Z; TIGRFAM: ribonuclease Z; manually curated; PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z; ribonuclease Z complement(1351597..1352523) Treponema succinifaciens DSM 2489 10431376 YP_004365467.1 CDS Tresu_1262 NC_015385.1 1352649 1353404 D hypothetical protein 1352649..1353404 Treponema succinifaciens DSM 2489 10431377 YP_004365468.1 CDS Tresu_1263 NC_015385.1 1353405 1354520 D COGs: COG0836 mannose-1-phosphate guanylyltransferase; InterPro IPR005835:IPR001538; KEGG: sta:STHERM_c01790 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; mannose-6-phosphate isomerase, type II, C-terminal; PRIAM: mannose-1-phosphate guanylyltransferase; SPTR: mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; mannose-1-phosphate guanylyltransferase 1353405..1354520 Treponema succinifaciens DSM 2489 10431378 YP_004365469.1 CDS Tresu_1264 NC_015385.1 1354551 1355510 D COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: cni:Calni_1181 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1354551..1355510 Treponema succinifaciens DSM 2489 10431379 YP_004365470.1 CDS Tresu_1265 NC_015385.1 1355844 1356161 R KEGG: sta:STHERM_c21680 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1355844..1356161) Treponema succinifaciens DSM 2489 10431380 YP_004365471.1 CDS Tresu_1266 NC_015385.1 1356182 1359370 R COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: ssm:Spirs_0038 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; acriflavin resistance protein complement(1356182..1359370) Treponema succinifaciens DSM 2489 10431381 YP_004365472.1 CDS Tresu_1267 NC_015385.1 1359374 1360327 R COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: ssm:Spirs_0037 efflux transporter, RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit; RND family efflux transporter MFP subunit complement(1359374..1360327) Treponema succinifaciens DSM 2489 10431382 YP_004365473.1 CDS Tresu_1268 NC_015385.1 1360329 1361744 R COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: ssm:Spirs_0036 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein; outer membrane efflux protein complement(1360329..1361744) Treponema succinifaciens DSM 2489 10431383 YP_004365474.1 CDS Tresu_1269 NC_015385.1 1361741 1363033 R InterPro IPR001647; KEGG: ssm:Spirs_0035 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator complement(1361741..1363033) Treponema succinifaciens DSM 2489 10431384 YP_004365475.1 CDS Tresu_1270 NC_015385.1 1363251 1363979 R COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: tde:TDE1083 RNA pseudouridylate synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; pseudouridine synthase complement(1363251..1363979) Treponema succinifaciens DSM 2489 10431385 YP_004365476.1 CDS Tresu_1271 NC_015385.1 1363986 1364966 R COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145:IPR006225; KEGG: tde:TDE1082 ribosomal large subunit pseudouridine synthase D; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: ribosomal large subunit pseudouridine synthase D; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; RluA family pseudouridine synthase complement(1363986..1364966) Treponema succinifaciens DSM 2489 10431386 YP_004365477.1 CDS Tresu_1272 NC_015385.1 1364967 1365479 R KEGG: tde:TDE1081 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1364967..1365479) Treponema succinifaciens DSM 2489 10431387 YP_004365478.1 CDS Tresu_1273 NC_015385.1 1365457 1366173 R COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR001608:IPR011078; KEGG: sta:STHERM_c17100 ATPase AAA pyridoxal 5'-phosphate-dependent enzyme; PFAM: Alanine racemase, N-terminal; SPTR: Predicted pyridoxal 5'-phosphate-dependent enzyme; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family; hypothetical protein complement(1365457..1366173) Treponema succinifaciens DSM 2489 10431388 YP_004365479.1 CDS Tresu_1274 NC_015385.1 1366188 1367063 R COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); HAMAP: ribosomal RNA adenine dimethylase; InterPro IPR001737:IPR011530:IPR020598; KEGG: tde:TDE1080 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase, N-terminal; SPTR: ribosomal RNA small subunit methyltransferase A; TIGRFAM: ribosomal RNA adenine dimethylase; PFAM: ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase; ribosomal RNA small subunit methyltransferase A complement(1366188..1367063) Treponema succinifaciens DSM 2489 10431389 YP_004365480.1 CDS Tresu_1275 NC_015385.1 1367079 1368344 R COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: tde:TDE1320 ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; SPTR: ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein; ComEC/Rec2-like protein complement(1367079..1368344) Treponema succinifaciens DSM 2489 10431390 YP_004365481.1 CDS Tresu_1276 NC_015385.1 1368338 1369498 R KEGG: tde:TDE1319 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1368338..1369498) Treponema succinifaciens DSM 2489 10431391 YP_004365482.1 CDS Tresu_1277 NC_015385.1 1369568 1370683 R InterPro IPR009875; KEGG: ssm:Spirs_1505 type IV pilus assembly PilZ; PFAM: Type IV pilus assembly PilZ; SPTR: Type IV pilus assembly PilZ; PFAM: PilZ domain; type IV pilus assembly PilZ complement(1369568..1370683) Treponema succinifaciens DSM 2489 10431392 YP_004365483.1 CDS Tresu_1278 NC_015385.1 1370766 1371416 D InterPro IPR003675; KEGG: bcz:BCZK2732 CAAX amino protease; PFAM: Abortive infection protein; SPTR: CAAX amino terminal protease; PFAM: CAAX amino terminal protease family; Abortive infection protein 1370766..1371416 Treponema succinifaciens DSM 2489 10431393 YP_004365484.1 CDS Tresu_1279 NC_015385.1 1371469 1372881 D COGs: COG0498 threonine synthase; InterPro IPR001926:IPR004450; KEGG: tde:TDE2192 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: threonine synthase; SPTR: threonine synthase, ATPase AAA; TIGRFAM: threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase; threonine synthase 1371469..1372881 Treponema succinifaciens DSM 2489 10431394 YP_004365485.1 CDS Tresu_1280 NC_015385.1 1372950 1373510 R COGs: COG1102 Cytidylate kinase; InterPro IPR011994:IPR011892; KEGG: tde:TDE1087 cytidylate kinase; PFAM: Cytidylate kinase domain; SPTR: Putative cytidylate kinase; TIGRFAM: Cytidylate kinase, ATPase AAA; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase, ATPase AAA; cytidylate kinase complement(1372950..1373510) Treponema succinifaciens DSM 2489 10431395 YP_004365486.1 CDS Tresu_1281 NC_015385.1 1373519 1374388 R COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR013527:IPR013551:IPR005229; KEGG: tde:TDE1086 hypothetical protein; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein; hypothetical protein complement(1373519..1374388) Treponema succinifaciens DSM 2489 10431396 YP_004365487.1 CDS Tresu_1282 NC_015385.1 1374398 1375897 R COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713:IPR013221:IPR004101:IPR005758; KEGG: tde:TDE1085 UDP-N-acetylmuramate--L-alanine ligase; PFAM: Mur ligase, C-terminal; Mur ligase, N-terminal; Mur ligase, central; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: UDP-N-acetylmuramate--alanine ligase; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase; UDP-N-acetylmuramate--L-alanine ligase complement(1374398..1375897) Treponema succinifaciens DSM 2489 10431397 YP_004365488.1 CDS Tresu_1283 NC_015385.1 1376101 1377414 R COGs: COG2115 Xylose isomerase; HAMAP: Xylose isomerase; InterPro IPR012307:IPR001998:IPR013452; KEGG: bvu:BVU_3953 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; PRIAM: Xylose isomerase; SPTR: Putative uncharacterized protein; TIGRFAM: Xylose isomerase, bacterial type; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase; Xylose isomerase complement(1376101..1377414) Treponema succinifaciens DSM 2489 10431398 YP_004365489.1 CDS Tresu_1284 NC_015385.1 1377486 1378973 R COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485:IPR006000; KEGG: plu:plu1959 xylulose kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; SPTR: D-xylulokinase; TIGRFAM: Xylulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase; xylulokinase complement(1377486..1378973) Treponema succinifaciens DSM 2489 10431399 YP_004365490.1 CDS Tresu_1285 NC_015385.1 1379119 1379952 D COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: ssm:Spirs_3785 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; AraC family transcriptional regulator 1379119..1379952 Treponema succinifaciens DSM 2489 10431400 YP_004365491.1 CDS Tresu_1286 NC_015385.1 1379955 1380383 R InterPro IPR001623; KEGG: ckr:CKR_3181 hypothetical protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Putative uncharacterized protein; PFAM: DnaJ domain; heat shock protein DnaJ domain-containing protein complement(1379955..1380383) Treponema succinifaciens DSM 2489 10431401 YP_004365492.1 CDS Tresu_1287 NC_015385.1 1380367 1381740 R COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR002197:IPR003593; KEGG: tde:TDE1969 sigma-54 dependent transcriptional regulator/response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Acetoacetate metabolism regulatory protein AtoC; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; Fis family transcriptional regulator complement(1380367..1381740) Treponema succinifaciens DSM 2489 10431402 YP_004365493.1 CDS Tresu_1288 NC_015385.1 1381812 1382999 R COGs: COG0642 Signal transduction histidine kinase; InterPro IPR013767:IPR003661:IPR003594:IPR000014; KEGG: ssm:Spirs_1708 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; SPTR: Sensory box histidine kinase; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; PAS/PAC sensor signal transduction histidine kinase complement(1381812..1382999) Treponema succinifaciens DSM 2489 10431403 YP_004365494.1 CDS Tresu_1289 NC_015385.1 1383019 1384257 R COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: tde:TDE1971 DNA polymerase III domain-containing protein; SPTR: DNA polymerase III domain protein; DNA polymerase III domain-containing protein complement(1383019..1384257) Treponema succinifaciens DSM 2489 10431404 YP_004365495.1 CDS Tresu_1290 NC_015385.1 1384260 1384793 R InterPro IPR003825; KEGG: tde:TDE1973 CvpA family protein; PFAM: Colicin V production, CvpA; SPTR: CvpA family protein; PFAM: Colicin V production protein; colicin V production protein complement(1384260..1384793) Treponema succinifaciens DSM 2489 10431405 YP_004365496.1 CDS Tresu_1291 NC_015385.1 1384790 1385941 R COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; HAMAP: N-acetylglucosaminyltransferase, MurG; InterPro IPR004276:IPR007235:IPR006009; KEGG: tde:TDE1974 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: glycosyl transferase, family 28; glycosyl transferase, family 28, C-terminal; PRIAM: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: N-acetylglucosaminyltransferase, MurG; PFAM: glycosyltransferase family 28 N-terminal domain; glycosyltransferase family 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase complement(1384790..1385941) Treponema succinifaciens DSM 2489 10431406 YP_004365497.1 CDS Tresu_1292 NC_015385.1 1385948 1386847 R InterPro IPR002110; KEGG: tde:TDE2450 ankyrin repeateat-containing protein; PFAM: Ankyrin repeat; SMART: Ankyrin repeat; SPTR: Ankyrin repeat protein; PFAM: Ankyrin repeat; ankyrin complement(1385948..1386847) Treponema succinifaciens DSM 2489 10431407 YP_004365498.1 CDS Tresu_1293 NC_015385.1 1386989 1387546 D KEGG: ele:Elen_2487 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1386989..1387546 Treponema succinifaciens DSM 2489 10431408 YP_004365499.1 CDS Tresu_1294 NC_015385.1 1387576 1388418 D COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: apv:Apar_0681 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter; ABC transporter 1387576..1388418 Treponema succinifaciens DSM 2489 10431409 YP_004365500.1 CDS Tresu_1295 NC_015385.1 1388415 1389242 D COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: shi:Shel_12810 ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter; sulfate-transporting ATPase 1388415..1389242 Treponema succinifaciens DSM 2489 10431410 YP_004365501.1 CDS Tresu_1296 NC_015385.1 1389239 1390009 D COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: ols:Olsu_0259 cobalt transport protein; PFAM: Cobalt transport protein; SPTR: Putative uncharacterized protein; PFAM: Cobalt transport protein; ABC transporter permease 1389239..1390009 Treponema succinifaciens DSM 2489 10431411 YP_004365502.1 CDS Tresu_1297 NC_015385.1 1390850 1392220 D COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); HAMAP: Trigger factor; InterPro IPR008881:IPR001179:IPR008880:IPR005215; KEGG: tde:TDE1671 trigger factor; PFAM: Trigger factor, C-terminal, bacterial; Trigger factor, ribosome-binding, bacterial; peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Trigger factor; TIGRFAM: Trigger factor; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor; trigger factor Tig 1390850..1392220 Treponema succinifaciens DSM 2489 10431418 YP_004365503.1 CDS Tresu_1298 NC_015385.1 1392309 1392920 D COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: peptidase S14, ClpP; InterPro IPR001907; KEGG: tde:TDE1672 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14, ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit 1; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; ATP-dependent Clp protease proteolytic subunit 1392309..1392920 Treponema succinifaciens DSM 2489 10431419 YP_004365504.1 CDS Tresu_1299 NC_015385.1 1392920 1394182 D COGs: COG1219 ATP-dependent protease Clp ATPase subunit; HAMAP: Clp protease, ATP-binding subunit ClpX; InterProIPR010603:IPR013093:IPR019489:IPR004487:IPR 003593; KEGG: tde:TDE1673 ATP-dependent protease ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent Clp protease ATP-binding subunit ClpX; TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX); ATP-dependent Clp protease ATP-binding subunit clpX 1392920..1394182 Treponema succinifaciens DSM 2489 10431420 YP_004365505.1 CDS Tresu_1300 NC_015385.1 1394229 1395347 R COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: tde:TDE1544 mannosyltransferase, ATPase AAA; PFAM: glycosyl transferase, group 1; SPTR: mannosyltransferase, ATPase AAA; PFAM: glycosyl transferases group 1; group 1 glycosyl transferase complement(1394229..1395347) Treponema succinifaciens DSM 2489 10431421 YP_004365506.1 CDS Tresu_1301 NC_015385.1 1395396 1396562 D COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: ctc:CTC01856 ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: ATP-dependent rRNA helicase RRP3; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; DEAD/DEAH box helicase 1395396..1396562 Treponema succinifaciens DSM 2489 10431422 YP_004365507.1 CDS Tresu_1302 NC_015385.1 1396618 1399572 D COGs: COG1196 Chromosome segregation ATPase; InterPro IPR003395:IPR011890; KEGG: tde:TDE1496 chromosome partition protein SmC, ATPase AAA; PFAM: RecF/RecN/SMC; SPTR: Chromosome segregation protein SMC; TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC N terminal domain; chromosome segregation protein SMC 1396618..1399572 Treponema succinifaciens DSM 2489 10431423 YP_004365508.1 CDS Tresu_1303 NC_015385.1 1399569 1399940 D KEGG: tde:TDE1497 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1399569..1399940 Treponema succinifaciens DSM 2489 10431424 YP_004365509.1 CDS Tresu_1304 NC_015385.1 1399937 1401430 D KEGG: tde:TDE1498 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1399937..1401430 Treponema succinifaciens DSM 2489 10431425 YP_004365510.1 CDS Tresu_1305 NC_015385.1 1401447 1402142 D COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: dev:DhcVS_974 hypothetical periplasmic protein; PFAM: protein of unknown function DUF541; SPTR: Hypothetical periplasmic protein; PFAM: protein of unknown function (DUF541); hypothetical protein 1401447..1402142 Treponema succinifaciens DSM 2489 10431426 YP_004365511.1 CDS Tresu_1306 NC_015385.1 1402175 1403512 D COGs: COG0172 Seryl-tRNA synthetase; HAMAP: Seryl-tRNA synthetase, class IIa; InterPro IPR015866:IPR002314:IPR002317; KEGG: tde:TDE2307 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; PRIAM: serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: Seryl-tRNA synthetase, class IIa; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase; seryl-tRNA synthetase 1402175..1403512 Treponema succinifaciens DSM 2489 10431427 YP_004365512.1 CDS Tresu_1307 NC_015385.1 1403530 1404627 D COGs: COG0628 permease; InterPro IPR002549; KEGG: sta:STHERM_c14310 hypothetical protein; PFAM: Uncharacterised protein family UPF0118; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF20; hypothetical protein 1403530..1404627 Treponema succinifaciens DSM 2489 10431428 YP_004365513.1 CDS Tresu_1308 NC_015385.1 1404658 1405635 R hypothetical protein complement(1404658..1405635) Treponema succinifaciens DSM 2489 10431429 YP_004365514.1 CDS Tresu_1309 NC_015385.1 1405635 1406267 R hypothetical protein complement(1405635..1406267) Treponema succinifaciens DSM 2489 10431430 YP_004365515.1 CDS Tresu_1310 NC_015385.1 1406419 1407129 D COGs: COG0670 Integral membrane protein interacts with FtsH; InterPro IPR006214; KEGG: ect:ECIAI39_0762 conserved hypothetical protein; ATPase AAA inner membrane protein; PFAM: Inhibitor of apoptosis-promoting Bax1-related; SPTR: Inner membrane protein YbhL; PFAM: Uncharacterised protein family UPF0005; hypothetical protein 1406419..1407129 Treponema succinifaciens DSM 2489 10431431 YP_004365516.1 CDS Tresu_1311 NC_015385.1 1407133 1409580 R COGs: COG1199 Rad3-related DNA helicase; InterPro IPR006554:IPR006555; KEGG: ssm:Spirs_1712 helicase C2; SMART: Helicase, ATP-dependent, c2 type; Helicase-like, DEXD box c2 type; SPTR: Helicase c2; PFAM: Helicase conserved C-terminal domain; protein of unknown function (DUF2466); helicase c2 complement(1407133..1409580) Treponema succinifaciens DSM 2489 10431432 YP_004365517.1 CDS Tresu_1312 NC_015385.1 1409854 1410795 D COGs: COG0039 Malate/lactate dehydrogenase; HAMAP: L-lactate dehydrogenase; InterPro IPR001236:IPR022383:IPR011304; KEGG: tpd:Teth39_1997 L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal; PRIAM: L-lactate dehydrogenase; SPTR: L-lactate dehydrogenase; TIGRFAM: L-lactate dehydrogenase; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: L-lactate dehydrogenase; L-lactate dehydrogenase 1409854..1410795 Treponema succinifaciens DSM 2489 10431433 YP_004365518.1 CDS Tresu_1313 NC_015385.1 1410796 1412184 D COGs: COG0114 Fumarase; HAMAP: Fumarate hydratase, class II; InterPro IPR022761:IPR018951:IPR005677; KEGG: afn:Acfer_2053 fumarate hydratase, class II; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal; PRIAM: Fumarate hydratase; SPTR: Fumarase; TIGRFAM: Fumarate hydratase, class II; PFAM: Lyase; Fumarase C C-terminus; TIGRFAM: fumarate hydratase, class II; class II fumarate hydratase 1410796..1412184 Treponema succinifaciens DSM 2489 10431434 YP_004365519.1 CDS Tresu_1314 NC_015385.1 1412249 1413088 D COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: ipo:Ilyop_2566 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich domain; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: Heterodisulfide reductase, subunit B; PFAM: Cysteine-rich domain; CoB--CoM heterodisulfide reductase 1412249..1413088 Treponema succinifaciens DSM 2489 10431435 YP_004365520.1 CDS Tresu_1315 NC_015385.1 1413081 1413476 D COGs: COG1150 Heterodisulfide reductase subunit C; KEGG: ipo:Ilyop_2565 heterodisulfide reductase subunit C-like protein; SPTR: Putative uncharacterized protein; heterodisulfide reductase subunit C-like protein 1413081..1413476 Treponema succinifaciens DSM 2489 10431436 YP_004365521.1 CDS Tresu_1316 NC_015385.1 1413487 1415499 D COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterPro IPR003953:IPR001450; KEGG: ipo:Ilyop_2564 FAD dependent oxidoreductase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; 4Fe-4S binding domain; SPTR: Heterodisulfide reductase, subunit A and related polyferredoxins; PFAM: FAD binding domain; 4Fe-4S binding domain; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 1413487..1415499 Treponema succinifaciens DSM 2489 10431437 YP_004365522.1 CDS Tresu_1317 NC_015385.1 1415552 1415992 D COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit; InterPro IPR003813; KEGG: ipo:Ilyop_2563 methyl-viologen-reducing hydrogenase delta subunit; PFAM: methyl-viologen-reducing hydrogenase, delta subunit; SPTR: Coenzyme F420-reducing hydrogenase, delta subunit; PFAM: methyl-viologen-reducing hydrogenase, delta subunit; methyl-viologen-reducing hydrogenase delta subunit 1415552..1415992 Treponema succinifaciens DSM 2489 10431438 YP_004365523.1 CDS Tresu_1318 NC_015385.1 1415977 1416939 D InterPro IPR001450; KEGG: ipo:Ilyop_2562 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain; SPTR: Putative uncharacterized protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1415977..1416939 Treponema succinifaciens DSM 2489 10431439 YP_004365524.1 CDS Tresu_1319 NC_015385.1 1416939 1417976 D KEGG: ipo:Ilyop_2561 4Fe-4S ferredoxin, iron-sulfur binding protein; SPTR: Putative uncharacterized protein; 4Fe-4S ferredoxin iron-sulfur binding protein 1416939..1417976 Treponema succinifaciens DSM 2489 10431440 YP_004365525.1 CDS Tresu_1320 NC_015385.1 1417993 1418823 D COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR008333:IPR001433:IPR019480; KEGG: ipo:Ilyop_2560 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; SPTR: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain; dihydroorotate dehydrogenase electron transfer subunit 1417993..1418823 Treponema succinifaciens DSM 2489 10431441 YP_004365526.1 CDS Tresu_1321 NC_015385.1 1418906 1419589 D COGs: COG1152 CO dehydrogenase/acetyl-CoA synthase alpha subunit; KEGG: ipo:Ilyop_2559 ferredoxin; SPTR: CO dehydrogenase/acetyl-CoA synthase alpha subunit; ferredoxin 1418906..1419589 Treponema succinifaciens DSM 2489 10431442 YP_004365527.1 CDS Tresu_1322 NC_015385.1 1419631 1421274 D COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953; KEGG: ipo:Ilyop_2558 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; PRIAM: L-aspartate oxidase; SPTR: L-aspartate oxidase; PFAM: FAD binding domain; L-aspartate oxidase 1419631..1421274 Treponema succinifaciens DSM 2489 10431443 YP_004365528.1 CDS Tresu_1323 NC_015385.1 1421371 1422966 D COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004010:IPR003660; KEGG: taf:THA_537 methyl-accepting chemotaxis protein; PFAM: Cache; HAMP linker domain; SPTR: methyl-accepting chemotaxis protein; PFAM: Cache domain; methyl-accepting chemotaxis sensory transducer 1421371..1422966 Treponema succinifaciens DSM 2489 10431444 YP_004365529.1 CDS Tresu_1324 NC_015385.1 1423172 1424209 R COGs: COG1215 glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: bth:BT_1709 ATPase AAA glycosyltransferase; PFAM: glycosyl transferase, family 2; SPTR: Putative uncharacterized protein; PFAM: glycosyl transferase family 2; family 2 glycosyl transferase complement(1423172..1424209) Treponema succinifaciens DSM 2489 10431445 YP_004365530.1 CDS Tresu_1325 NC_015385.1 1424169 1425473 R KEGG: pru:PRU_0444 ATPase AAA WbuO protein; SPTR: Predicted protein; hypothetical protein complement(1424169..1425473) Treponema succinifaciens DSM 2489 10431446 YP_004365531.1 CDS Tresu_1327 NC_015385.1 1425694 1426892 D InterPro IPR002514; KEGG: lby:Lbys_0266 transposase IS3/is911 family protein; PFAM: Transposase IS3/IS911family; SPTR: Putative uncharacterized protein; manually curated; PFAM: Integrase core domain; Transposase; transposase IS3/IS911 family protein join(1425694..1425969,1425969..1426892) Treponema succinifaciens DSM 2489 10431448 YP_004365532.1 CDS Tresu_1328 NC_015385.1 1426937 1427650 R COGs: COG1216 glycosyltransferase; KEGG: ecl:EcolC_1610 glycosyl transferase family protein; SPTR: Putative glycosyltransferase; PFAM: glycosyl transferase family 2; glycosyl transferase family protein complement(1426937..1427650) Treponema succinifaciens DSM 2489 10431449 YP_004365533.1 CDS Tresu_1329 NC_015385.1 1427647 1428801 R KEGG: ecl:EcolC_1609 hypothetical protein; SPTR: Putative Wzy; hypothetical protein complement(1427647..1428801) Treponema succinifaciens DSM 2489 10431450 YP_004365534.1 CDS Tresu_1330 NC_015385.1 1428828 1429481 R hypothetical protein complement(1428828..1429481) Treponema succinifaciens DSM 2489 10431451 YP_004365535.1 CDS Tresu_1331 NC_015385.1 1429655 1430890 R COGs: COG1887 Putative glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; InterPro IPR007554; KEGG: gtn:GTNG_3260 ATPase AAA glycerophosphotransferase; PFAM: CDP-glycerol glycerophosphotransferase; SPTR: Putative glycerophosphotransferase; PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP- glycerol:poly(glycerophosphate)glycerophosphotransferase complement(1429655..1430890) Treponema succinifaciens DSM 2489 10431452 YP_004365536.1 CDS Tresu_1332 NC_015385.1 1430883 1432364 R COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: snp:SPAP_1297 O-antigen and teichoic acid exporter membrane protein; PFAM: polysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; PFAM: polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1430883..1432364) Treponema succinifaciens DSM 2489 10431453 YP_004365537.1 CDS Tresu_1333 NC_015385.1 1432382 1433230 R COGs: COG3475 LPS biosynthesis protein; InterPro IPR007074; KEGG: lbu:LBUL_1801 LPS biosynthesis protein; PFAM: LicD-like; SPTR: Putative uncharacterized protein; PFAM: LICD protein Family; LicD family protein complement(1432382..1433230) Treponema succinifaciens DSM 2489 10431454 YP_004365538.1 CDS Tresu_1334 NC_015385.1 1433230 1433622 R COGs: COG0615 Cytidylyltransferase; InterPro IPR004820:IPR004821:IPR006409; KEGG: fsu:Fisuc_0969 glycerol-3-phosphate cytidylyltransferase; PFAM: Cytidylyltransferase; PRIAM: glycerol-3-phosphate cytidylyltransferase; SPTR: Putative uncharacterized protein; TIGRFAM: glycerol-3-phosphate cytidylyltransferase; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain; glycerol-3-phosphate cytidylyltransferase; glycerol-3-phosphate cytidylyltransferase complement(1433230..1433622) Treponema succinifaciens DSM 2489 10431455 YP_004365539.1 CDS Tresu_1335 NC_015385.1 1433624 1434052 R hypothetical protein complement(1433624..1434052) Treponema succinifaciens DSM 2489 10431456 YP_004365540.1 CDS Tresu_1336 NC_015385.1 1434202 1434525 D InterPro IPR001387; KEGG: ssm:Spirs_3965 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix; hypothetical protein 1434202..1434525 Treponema succinifaciens DSM 2489 10431457 YP_004365541.1 CDS Tresu_1337 NC_015385.1 1434737 1437064 D COGs: COG0143 methionyl-tRNA synthetase; HAMAP: methionyl-tRNA synthetase; InterPro IPR015413:IPR002547:IPR014758; KEGG: tde:TDE1063 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; PRIAM: methionine--tRNA ligase; SPTR: methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (M); Anticodon-binding domain; Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase; methionyl-tRNA synthetase 1434737..1437064 Treponema succinifaciens DSM 2489 10431458 YP_004365542.1 CDS Tresu_1338 NC_015385.1 1437083 1438210 D COGs: COG2348 Uncharacterized protein involved in methicillin resistance; InterPro IPR003447; KEGG: ssm:Spirs_2888 methicillin resistance protein; PFAM: methicillin resistance protein; SPTR: FemAB family protein; PFAM: FemAB family; methicillin resistance protein 1437083..1438210 Treponema succinifaciens DSM 2489 10431459 YP_004365543.1 CDS Tresu_1339 NC_015385.1 1438216 1440195 R InterPro IPR004300:IPR015179; KEGG: tde:TDE1395 glycosy hydrolase family protein; PFAM: glycoside hydrolase, family 57, N-terminal; alpha-amylase/4-alpha-glucanotransferase, C-terminal; SPTR: glycosyl hydrolase, family 57; PFAM: glycosyl hydrolase family 57; Domain of unknown function (DUF1926); glycoside hydrolase family protein complement(1438216..1440195) Treponema succinifaciens DSM 2489 10431460 YP_004365544.1 CDS Tresu_1340 NC_015385.1 1440205 1440807 R InterPro IPR001450; KEGG: apr:Apre_1322 electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S binding domain; SPTR: Electron transport complex, RnfABCDGE type, B subunit; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(1440205..1440807) Treponema succinifaciens DSM 2489 10431461 YP_004365545.1 CDS Tresu_1341 NC_015385.1 1440804 1441361 R hypothetical protein complement(1440804..1441361) Treponema succinifaciens DSM 2489 10431462 YP_004365546.1 CDS Tresu_1342 NC_015385.1 1441363 1441977 R KEGG: tde:TDE1393 hypothetical protein; SPTR: Putative membrane protein; hypothetical protein complement(1441363..1441977) Treponema succinifaciens DSM 2489 10431463 YP_004365547.1 CDS Tresu_1343 NC_015385.1 1442005 1442508 R hypothetical protein complement(1442005..1442508) Treponema succinifaciens DSM 2489 10431464 YP_004365548.1 CDS Tresu_1344 NC_015385.1 1442510 1443586 R COGs: COG4658 NADH:ubiquinone oxidoreductase subunit RnfD; KEGG: tde:TDE1391 NQR2/RnfD/RnfE family protein; SPTR: NQR2/RnfD/RnfE family protein; PFAM: NQR2, RnfD, RnfE family; NQR2/RnfD/RnfE family protein complement(1442510..1443586) Treponema succinifaciens DSM 2489 10431465 YP_004365549.1 CDS Tresu_1345 NC_015385.1 1443596 1444870 R COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC; InterPro IPR019554; KEGG: tde:TDE1390 hypothetical protein; PFAM: Soluble ligand binding domain; SPTR: Putative uncharacterized protein; PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit; Soluble ligand binding domain-containing protein complement(1443596..1444870) Treponema succinifaciens DSM 2489 10431466 YP_004365550.1 CDS Tresu_1346 NC_015385.1 1444931 1446325 R KEGG: tde:TDE1389 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1444931..1446325) Treponema succinifaciens DSM 2489 10431467 YP_004365551.1 CDS Tresu_1347 NC_015385.1 1446327 1446800 R COGs: COG1963 conserved hypothetical protein; InterPro IPR003832; KEGG: tde:TDE1388 hypothetical protein; PFAM: Acid phosphatase/vanadium-dependent haloperoxidase-related; SPTR: Integral membrane protein; PFAM: Divergent PAP2 family; acid phosphatase/vanadium-dependent haloperoxidase related protein complement(1446327..1446800) Treponema succinifaciens DSM 2489 10431468 YP_004365552.1 CDS Tresu_1348 NC_015385.1 1446847 1447791 D COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: tpp:TPASS_0154 hypothetical protein; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Putative uncharacterized protein; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; pseudouridine synthase 1446847..1447791 Treponema succinifaciens DSM 2489 10431469 YP_004365553.1 CDS Tresu_1349 NC_015385.1 1447795 1448658 D KEGG: tde:TDE1967 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1447795..1448658 Treponema succinifaciens DSM 2489 10431470 YP_004365554.1 CDS Tresu_1350 NC_015385.1 1448744 1449868 D COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646:IPR010206; KEGG: tde:TDE1726 polyA polymerase family protein; PFAM: poly A polymerase, head domain; PRIAM: polynucleotide adenylyltransferase; SPTR: polyA polymerase family protein; TIGRFAM: poly(A) polymerase, PcnB; PFAM: poly A polymerase head domain; TIGRFAM: poly(A) polymerase; poly(A) polymerase 1448744..1449868 Treponema succinifaciens DSM 2489 10431471 YP_004365555.1 CDS Tresu_1351 NC_015385.1 1449865 1450794 R COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: tde:TDE2146 alpha/beta fold family hydrolase; PFAM: alpha/beta hydrolase fold-1; SPTR: Hydrolase, alpha/beta fold family; PFAM: Putative lysophospholipase; alpha/beta hydrolase fold protein complement(1449865..1450794) Treponema succinifaciens DSM 2489 10431472 YP_004365556.1 CDS Tresu_1352 NC_015385.1 1450864 1451949 R COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002305:IPR002306; KEGG: ssm:Spirs_4220 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase complement(1450864..1451949) Treponema succinifaciens DSM 2489 10431473 YP_004365557.1 CDS Tresu_1353 NC_015385.1 1452054 1453535 R COGs: COG0297 glycogen synthase; HAMAP: glycogen/starch synthases, ADP-glucose type; InterPro IPR013534:IPR001296:IPR011835; KEGG: tde:TDE1582 glycogen synthase; PFAM: Starch synthase, catalytic domain; glycosyl transferase, group 1; PRIAM: Starch synthase; SPTR: glycogen synthase; TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: Starch synthase catalytic domain; glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type; glycogen synthase complement(1452054..1453535) Treponema succinifaciens DSM 2489 10431474 YP_004365558.1 CDS Tresu_1354 NC_015385.1 1453532 1454737 R COGs: COG0436 aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: dat:HRM2_31380 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII; PRIAM: aspartate transaminase; SPTR: Putative aspartate/tyrosine/aromatic acid aminotransferase; PFAM: Aminotransferase class I and II; aspartate transaminase complement(1453532..1454737) Treponema succinifaciens DSM 2489 10431475 YP_004365559.1 CDS Tresu_1355 NC_015385.1 1455168 1456079 R KEGG: fjo:Fjoh_0919 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1455168..1456079) Treponema succinifaciens DSM 2489 10431476 YP_004365560.1 CDS Tresu_1356 NC_015385.1 1456096 1456425 R hypothetical protein complement(1456096..1456425) Treponema succinifaciens DSM 2489 10431477 YP_004365561.1 CDS Tresu_1357 NC_015385.1 1457271 1458953 R COGs: COG4211 ABC-type glucose/galactose transport system permease component; InterPro IPR001851; KEGG: tde:TDE2215 galactoside ABC transporter, permease protein, ATPase AAA; PFAM: ABC transporter permease; SPTR: Galactoside ABC transporter, permease protein, ATPase AAA; PFAM: Branched-chain amino acid transport system / permease component; ABC transporter permease complement(1457271..1458953) Treponema succinifaciens DSM 2489 10431480 YP_004365562.1 CDS Tresu_1358 NC_015385.1 1458971 1460464 R COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: tde:TDE2216 galactoside ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: sugar ABC transporter ATPase; SMART: ATPase, AAA+ type, core; SPTR: Galactose/methyl galactoside import ATP-binding protein MglA; PFAM: ABC transporter; sugar ABC transporter ATPase complement(1458971..1460464) Treponema succinifaciens DSM 2489 10431481 YP_004365563.1 CDS Tresu_1359 NC_015385.1 1460585 1461790 R COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: tde:TDE2217 galactose/glucose-binding lipoprotein; SPTR: Galactose/glucose-binding lipoprotein; galactose/glucose-binding lipoprotein complement(1460585..1461790) Treponema succinifaciens DSM 2489 10431482 YP_004365564.1 CDS Tresu_1360 NC_015385.1 1462105 1463133 D COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR000843; KEGG: sta:STHERM_c20570 transcriptional regulatory protein; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulatory protein; PFAM: Bacterial regulatory proteins, lacI family; LacI family transcriptional regulator 1462105..1463133 Treponema succinifaciens DSM 2489 10431483 YP_004365565.1 CDS Tresu_1361 NC_015385.1 1463227 1465695 R COGs: COG3459 Cellobiose phosphorylase; InterPro IPR009342:IPR010383:IPR010403; KEGG: cth:Cthe_0275 cellobiose phosphorylase; PFAM: glycosyltransferase 36; Putative carbohydrate binding; glycosyltransferase 36 associated; SPTR: Cellobiose phosphorylase; PFAM: glycosyltransferase family 36; Putative carbohydrate binding domain; glycosyltransferase 36 associated family; glycosyltransferase complement(1463227..1465695) Treponema succinifaciens DSM 2489 10431484 YP_004365566.1 CDS Tresu_1362 NC_015385.1 1465849 1467189 D InterPro IPR002110; KEGG: aar:Acear_1168 ankyrin; PFAM: Ankyrin repeat; SPTR: FOG: Ankyrin repeat; PFAM: Ankyrin repeat; ankyrin 1465849..1467189 Treponema succinifaciens DSM 2489 10431485 YP_004365567.1 CDS Tresu_1363 NC_015385.1 1467192 1467761 D COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398; KEGG: tde:TDE1881 methyltransferase, ATPase AAA; PFAM: RNA methyltransferase, RsmD; SPTR: methyltransferase, ATPase AAA; TIGRFAM: RNA methyltransferase, RsmD; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family; methyltransferase 1467192..1467761 Treponema succinifaciens DSM 2489 10431486 YP_004365568.1 CDS Tresu_1364 NC_015385.1 1467838 1468176 D KEGG: tde:TDE2072 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1467838..1468176 Treponema succinifaciens DSM 2489 10431487 YP_004365569.1 CDS Tresu_1365 NC_015385.1 1468189 1469334 D InterPro IPR001440:IPR013105:IPR019734; KEGG: ssm:Spirs_3144 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR domain protein; PFAM: Tetratricopeptide repeat; hypothetical protein 1468189..1469334 Treponema succinifaciens DSM 2489 10431488 YP_004365570.1 CDS Tresu_1366 NC_015385.1 1469345 1470373 D COGs: COG0820 Fe-S-cluster redox enzyme; HAMAP: ribosomal RNA large subunit methyltransferase RlmN; InterPro IPR007197:IPR004383; KEGG: tde:TDE2074 radical SAM protein; PFAM: Radical SAM; SPTR: ribosomal RNA large subunit methyltransferase N; TIGRFAM: ribosomal RNA large subunit methyltransferase RlmN; PFAM: Radical SAM superfamily; TIGRFAM: 23S rRNA m2A2503 methyltransferase; ribosomal RNA large subunit methyltransferase N 1469345..1470373 Treponema succinifaciens DSM 2489 10431489 YP_004365571.1 CDS Tresu_1367 NC_015385.1 1470443 1470652 D hypothetical protein 1470443..1470652 Treponema succinifaciens DSM 2489 10431490 YP_004365572.1 CDS Tresu_1368 NC_015385.1 1470659 1471603 D COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: cce:Ccel_3425 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: Glyoxylate reductase; SPTR: Putative uncharacterized protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; glyoxylate reductase 1470659..1471603 Treponema succinifaciens DSM 2489 10431491 YP_004365573.1 CDS Tresu_1369 NC_015385.1 1471678 1472964 D COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterPro IPR001030:IPR011826:IPR006251; KEGG: ccb:Clocel_2602 homoaconitate hydratase family protein; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; SPTR: 3-isopropylmalate dehydratase large subunit; TIGRFAM: Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase family protein; homoaconitate hydratase family protein 1471678..1472964 Treponema succinifaciens DSM 2489 10431492 YP_004365574.1 CDS Tresu_1370 NC_015385.1 1472994 1473527 D COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR000573; KEGG: ccb:Clocel_2601 aconitate hydratase domain-containing protein; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: 3-isopropylmalate dehydratase small subunit 2; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; aconitate hydratase domain-containing protein 1472994..1473527 Treponema succinifaciens DSM 2489 10431493 YP_004365575.1 CDS Tresu_1371 NC_015385.1 1473787 1474626 D COGs: COG1378 transcriptional regulator protein; InterPro IPR002831; KEGG: str:Sterm_1982 transcriptional regulator, TrmB; PFAM: Transcription regulator TrmB, N-terminal; SPTR: TrmB family sugar-specific transcriptional regulator; PFAM: Sugar-specific transcriptional regulator TrmB; TrmB family transcriptional regulator 1473787..1474626 Treponema succinifaciens DSM 2489 10431494 YP_004365576.1 CDS Tresu_1372 NC_015385.1 1474628 1475983 D COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: cbt:CLH_1898 mate efflux family protein; PFAM: Multi antimicrobial extrusion protein; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: ATPase AAA efflux protein, MATE family; MATE efflux family protein 1474628..1475983 Treponema succinifaciens DSM 2489 10431495 YP_004365577.1 CDS Tresu_1373 NC_015385.1 1476005 1477405 D COGs: COG0366 glycosidase; InterPro IPR006047:IPR006589; KEGG: sds:SDEG_0325 alpha-amylase precursor; PFAM: glycosyl hydrolase, family 13, catalytic domain; PRIAM: alpha-amylase; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: alpha-amylase (1,4-alpha-D-glucanglucanohydrolase); PFAM: alpha amylase, catalytic domain; alpha-amylase 1476005..1477405 Treponema succinifaciens DSM 2489 10431496 YP_004365578.1 CDS Tresu_1374 NC_015385.1 1477536 1479533 D COGs: COG1501 alpha-glucosidase family 31 of glycosyl hydrolase; InterPro IPR000322; KEGG: bpb:bpr_I2860 glycoside hydrolase family 31 Gh31D; PFAM: glycoside hydrolase, family 31; PRIAM: alpha-glucosidase; SPTR: Putative uncharacterized protein; PFAM: glycosyl hydrolases family 31; alpha-glucosidase 1477536..1479533 Treponema succinifaciens DSM 2489 10431497 YP_004365579.1 CDS Tresu_1375 NC_015385.1 1479576 1480073 R COGs: COG2131 deoxycytidylate deaminase; InterPro IPR002125; KEGG: tde:TDE2193 deoxycytidylate deaminase, ATPase AAA; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: dCMP deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; CMP/dCMP deaminase zinc-binding protein complement(1479576..1480073) Treponema succinifaciens DSM 2489 10431498 YP_004365580.1 CDS Tresu_1376 NC_015385.1 1480255 1481559 R COGs: COG2252 Permease; InterPro IPR006043; KEGG: tde:TDE1360 xanthine/uracil permease family protein; PFAM: xanthine/uracil/vitamin C permease; SPTR: Putative integral membrane protein; PFAM: Permease family; xanthine/uracil/vitamin C permease complement(1480255..1481559) Treponema succinifaciens DSM 2489 10431499 YP_004365581.1 CDS Tresu_1377 NC_015385.1 1481922 1483397 D SPTR: GG25361, isoform B; hypothetical protein 1481922..1483397 Treponema succinifaciens DSM 2489 10431500 YP_004365582.1 CDS Tresu_1378 NC_015385.1 1483816 1485393 R COGs: COG0008 glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR020058:IPR004527; KEGG: tde:TDE0204 glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: glutamate--tRNA ligase; SPTR: glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family; glutamyl-tRNA synthetase complement(1483816..1485393) Treponema succinifaciens DSM 2489 10431501 YP_004365583.1 CDS Tresu_1379 NC_015385.1 1486053 1486781 D COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: tde:TDE1852 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter; phosphonate-transporting ATPase 1486053..1486781 Treponema succinifaciens DSM 2489 10431502 YP_004365584.1 CDS Tresu_1380 NC_015385.1 1486801 1487178 D COGs: COG3304 membrane protein; InterPro IPR005185; KEGG: ele:Elen_2694 protein of unknown function DUF307; PFAM: protein of unknown function DUF307; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF307); hypothetical protein 1486801..1487178 Treponema succinifaciens DSM 2489 10431503 YP_004365585.1 CDS Tresu_1381 NC_015385.1 1487183 1487482 R COGs: COG3093 Plasmid maintenance system antidote protein; InterPro IPR001387:IPR013430; KEGG: tde:TDE1610 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix; TIGRFAM: addiction module antidote protein, HigA family; XRE family transcriptional regulator complement(1487183..1487482) Treponema succinifaciens DSM 2489 10431504 YP_004365586.1 CDS Tresu_1382 NC_015385.1 1487529 1488080 R hypothetical protein complement(1487529..1488080) Treponema succinifaciens DSM 2489 10431505 YP_004365587.1 CDS Tresu_1384 NC_015385.1 1488522 1489706 D COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732:IPR014026:IPR014027:IPR017476; KEGG: sbc:SbBS512_E1203 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: Putative uncharacterized protein; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; nucleotide sugar dehydrogenase 1488522..1489706 Treponema succinifaciens DSM 2489 10431508 YP_004365588.1 CDS Tresu_1385 NC_015385.1 1489716 1490771 D COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: bpr:GBP346_A0575 glycosyl transferase, group 1 family; PFAM: glycosyl transferase, group 1; SPTR: Putative uncharacterized protein; PFAM: glycosyl transferases group 1; group 1 glycosyl transferase 1489716..1490771 Treponema succinifaciens DSM 2489 10431509 YP_004365589.1 CDS Tresu_1386 NC_015385.1 1490964 1491824 D COGs: COG1344 flagellin and related hook-associated protein; InterPro IPR001029; KEGG: ssm:Spirs_2597 flagellin domain protein; PFAM: flagellin, D0/D1 domain; SPTR: flagellar filament 31.3 kDa core protein; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; flagellin domain-containing protein 1490964..1491824 Treponema succinifaciens DSM 2489 10431510 YP_004365590.1 CDS Tresu_1387 NC_015385.1 1492173 1493027 D COGs: COG1344 flagellin and related hook-associated protein; InterPro IPR001029; KEGG: ssm:Spirs_2598 flagellin domain protein; PFAM: flagellin, D0/D1 domain; SPTR: flagellar filament 30.7 kDa core protein; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; flagellin domain-containing protein 1492173..1493027 Treponema succinifaciens DSM 2489 10431511 YP_004365591.1 CDS Tresu_1388 NC_015385.1 1493174 1493551 D COGs: COG1334 Uncharacterized flagellar protein FlaG; InterPro IPR005186; KEGG: tde:TDE1473 flagellin FlaG, ATPase AAA; PFAM: flagellar protein FlaG protein; SPTR: flagellin FlaG, ATPase AAA; PFAM: FlaG protein; flagellar protein FlaG protein 1493174..1493551 Treponema succinifaciens DSM 2489 10431512 YP_004365592.1 CDS Tresu_1389 NC_015385.1 1493551 1495635 D COGs: COG1345 flagellar capping protein; InterPro IPR003481:IPR010809; KEGG: tde:TDE1472 flagellar hook-associated protein FliD; PFAM: flagellar hook-associated 2, C-terminal; flagellar hook-associated protein 2, N-terminal; SPTR: flagellar hook-associated protein 2; PFAM: flagellar hook-associated protein 2 C-terminus; flagellar hook-associated 2 domain-containing protein 1493551..1495635 Treponema succinifaciens DSM 2489 10431513 YP_004365593.1 CDS Tresu_1390 NC_015385.1 1495645 1496244 D KEGG: tpp:TPASS_0873 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1495645..1496244 Treponema succinifaciens DSM 2489 10431514 YP_004365594.1 CDS Tresu_1391 NC_015385.1 1496250 1497326 D InterPro IPR009875; KEGG: sta:STHERM_c07690 hypothetical protein; PFAM: Type IV pilus assembly PilZ; SPTR: Putative uncharacterized protein; PFAM: PilZ domain; type IV pilus assembly PilZ 1496250..1497326 Treponema succinifaciens DSM 2489 10431515 YP_004365595.1 CDS Tresu_1392 NC_015385.1 1497347 1497616 D KEGG: tpp:TPASS_0874 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1497347..1497616 Treponema succinifaciens DSM 2489 10431516 YP_004365596.1 CDS Tresu_1393 NC_015385.1 1497633 1498079 D COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: tde:TDE1469 hypothetical protein; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR: Putative uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family; hypothetical protein 1497633..1498079 Treponema succinifaciens DSM 2489 10431517 YP_004365597.1 CDS Tresu_1394 NC_015385.1 1498081 1498764 D COGs: COG1214 Inactive homolog of metal-dependent protease ATPase AAA molecular chaperone; InterPro IPR000905:IPR022496; KEGG: ssm:Spirs_2605 peptidase M22 glycoprotease; PFAM: peptidase M22, glycoprotease; SPTR: peptidase M22 glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: glycoprotease family; TIGRFAM: universal bacterial protein YeaZ; hypothetical protein 1498081..1498764 Treponema succinifaciens DSM 2489 10431518 YP_004365598.1 CDS Tresu_1395 NC_015385.1 1498786 1499004 R COGs: COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); HAMAP: Carbon storage regulator; InterPro IPR003751; KEGG: ssm:Spirs_2607 carbon storage regulator, CsrA; PFAM: Carbon storage regulator; SPTR: Carbon storage regulator homolog; TIGRFAM: Carbon storage regulator; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA); carbon storage regulator CsrA complement(1498786..1499004) Treponema succinifaciens DSM 2489 10431519 YP_004365599.1 CDS Tresu_1396 NC_015385.1 1499004 1499447 R COGs: COG1699 conserved hypothetical protein; HAMAP: flagellar assembly factor FliW; InterPro IPR003775; KEGG: tde:TDE2354 flagellar assembly protein FliW; PFAM: flagellar assembly factor FliW; SPTR: flagellar assembly factor fliW; PFAM: FliW protein; flagellar assembly factor fliW complement(1499004..1499447) Treponema succinifaciens DSM 2489 10431520 YP_004365600.1 CDS Tresu_1397 NC_015385.1 1499483 1500730 R COGs: COG1344 flagellin and related hook-associated protein; InterPro IPR001029:IPR010810:IPR013384; KEGG: tde:TDE2353 flagellar hook-associated protein FlgL; PFAM: flagellin, D0/D1 domain; flagellin hook, IN motif; SPTR: flagellar hook-associated protein 3; TIGRFAM: flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; TIGRFAM: flagellar hook-associated protein 3; flagellar hook-associated protein 3 complement(1499483..1500730) Treponema succinifaciens DSM 2489 10431521 YP_004365601.1 CDS Tresu_1398 NC_015385.1 1500755 1502626 R COGs: COG1256 flagellar hook-associated protein; InterPro IPR001444:IPR010810:IPR010930:IPR002371; KEGG: tde:TDE2352 flagellar hook-associated protein FlgK; PFAM: Domain of unknown function DUF1078, C-terminal; flagellin hook, IN motif; flagellar basal body rod protein, N-terminal; SPTR: flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein, FlgK; PFAM: flagellin hook IN motif; Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK complement(1500755..1502626) Treponema succinifaciens DSM 2489 10431522 YP_004365602.1 CDS Tresu_1399 NC_015385.1 1502642 1503085 R KEGG: tde:TDE2351 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: FlgN protein; hypothetical protein complement(1502642..1503085) Treponema succinifaciens DSM 2489 10431523 YP_004365603.1 CDS Tresu_1400 NC_015385.1 1503281 1503841 R InterPro IPR019301; KEGG: tde:TDE1008 flagellar protein, ATPase AAA; PFAM: flagellar protein FlgJ, N-terminal; SPTR: Putative flagellar protein; PFAM: Rod binding protein; flagellar protein FlgJ complement(1503281..1503841) Treponema succinifaciens DSM 2489 10431524 YP_004365604.1 CDS Tresu_1401 NC_015385.1 1504046 1504840 R COGs: COG4786 flagellar basal body rod protein; InterPro IPR001444:IPR010930:IPR020013:IPR012834; KEGG: tde:TDE1007 flagellar basal body rod protein FlgG; PFAM: Domain of unknown function DUF1078, C-terminal; flagellar basal body rod protein, N-terminal; SPTR: flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function (DUF1078); flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria; flagellar basal-body rod protein FlgG complement(1504046..1504840) Treponema succinifaciens DSM 2489 10431525 YP_004365605.1 CDS Tresu_1402 NC_015385.1 1504857 1505657 R COGs: COG4786 flagellar basal body rod protein; InterPro IPR001444:IPR010930:IPR020013:IPR012836; KEGG: tde:TDE1006 flagellar basal-body rod protein FlgG; PFAM: Domain of unknown function DUF1078, C-terminal; flagellar basal body rod protein, N-terminal; SPTR: flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function (DUF1078); flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins; flagellar basal-body rod protein FlgF complement(1504857..1505657) Treponema succinifaciens DSM 2489 10431526 YP_004365606.1 CDS Tresu_1403 NC_015385.1 1505822 1507234 D COGs: COG2200 FOG: EAL domain; InterPro IPR000160:IPR001633; KEGG: cdf:CD1476 ATPase AAA signaling protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SPTR: Putative signaling protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; diguanylate cyclase/phosphodiesterase 1505822..1507234 Treponema succinifaciens DSM 2489 10431527 YP_004365607.1 CDS Tresu_1404 NC_015385.1 1507400 1508692 D COGs: COG0448 ADP-glucose pyrophosphorylase; InterPro IPR005835:IPR011831; KEGG: tde:TDE2035 glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate adenylyltransferase; SPTR: Glucose-1-phosphate adenylyltransferase; TIGRFAM: Glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 1507400..1508692 Treponema succinifaciens DSM 2489 10431528 YP_004365608.1 CDS Tresu_1405 NC_015385.1 1508913 1510682 R COGs: COG1158 Transcription termination factor; InterProIPR011112:IPR011113:IPR000194:IPR011129:IPR 003593:IPR004665; KEGG: tpp:TPASS_0254 transcription termination factor Rho; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; SMART: Cold shock protein; Rho termination factor, N-terminal; ATPase, AAA+ type, core; SPTR: Transcription termination factor Rho; TIGRFAM: Transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho; transcription termination factor Rho complement(1508913..1510682) Treponema succinifaciens DSM 2489 10431529 YP_004365609.1 CDS Tresu_1406 NC_015385.1 1510935 1511351 R COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: tde:TDE1707 hypothetical protein; PFAM: protein of unknown function DUF583; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function, DUF583; hypothetical protein complement(1510935..1511351) Treponema succinifaciens DSM 2489 10431530 YP_004365610.1 CDS Tresu_1407 NC_015385.1 1511388 1511714 R COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: sta:STHERM_c18570 DNA-binding protein HbbU; PFAM: histone-like bacterial DNA-binding protein; SMART: histone-like bacterial DNA-binding protein; SPTR: DNA-binding protein HbbU; PFAM: Bacterial DNA-binding protein; histone family protein DNA-binding protein complement(1511388..1511714) Treponema succinifaciens DSM 2489 10431531 YP_004365611.1 CDS Tresu_1408 NC_015385.1 1511766 1512044 R HAMAP: ribosomal protein S20; InterPro IPR002583; KEGG: tde:TDE1710 30S ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; TIGRFAM: ribosomal protein S20; 30S ribosomal protein S20 complement(1511766..1512044) Treponema succinifaciens DSM 2489 10431532 YP_004365612.1 CDS Tresu_1409 NC_015385.1 1512096 1512269 R KEGG: tde:TDE2408 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1512096..1512269) Treponema succinifaciens DSM 2489 10431533 YP_004365613.1 CDS Tresu_1410 NC_015385.1 1512505 1513269 R COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: tde:TDE1989 acyltransferase family protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: acyltransferase family protein; PFAM: acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; phospholipid/glycerol acyltransferase complement(1512505..1513269) Treponema succinifaciens DSM 2489 10431534 YP_004365614.1 CDS Tresu_1411 NC_015385.1 1513297 1515309 R COGs: COG3867 arabinogalactan endo-1 4-beta-galactosidase; InterPro IPR011683:IPR011081; KEGG: bha:BH2023 hypothetical protein; PFAM: glycosyl hydrolase 53; Bacterial Ig-related; PRIAM: arabinogalactan endo-1,4-beta-galactosidase; SPTR: arabinogalactan endo-1,4-beta-galactosidase; PFAM: glycosyl hydrolase family 53; Bacterial Ig-like domain (group 4); arabinogalactan endo-1,4-beta-galactosidase complement(1513297..1515309) Treponema succinifaciens DSM 2489 10431535 YP_004365615.1 CDS Tresu_1412 NC_015385.1 1515465 1517027 R InterPro IPR007730; KEGG: ang:An01g09380 hypothetical protein; PFAM: Sporulation-related domain; SPTR: Acidic repeat protein; PFAM: Sporulation related domain; sporulation domain-containing protein complement(1515465..1517027) Treponema succinifaciens DSM 2489 10431536 YP_004365616.1 CDS Tresu_1413 NC_015385.1 1517035 1517538 R hypothetical protein complement(1517035..1517538) Treponema succinifaciens DSM 2489 10431537 YP_004365617.1 CDS Tresu_1414 NC_015385.1 1517792 1519120 R COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: ere:EUBREC_1389 hypothetical protein; PFAM: Multi antimicrobial extrusion protein; SPTR: Putative efflux protein, MATE family; TIGRFAM: Multi antimicrobial extrusion protein; manually curated; PFAM: MatE; TIGRFAM: ATPase AAA efflux protein, MATE family; MATE efflux family protein complement(1517792..1519120) Treponema succinifaciens DSM 2489 10431538 YP_004365618.1 CDS Tresu_1417 NC_015385.1 1520270 1520596 R hypothetical protein complement(1520270..1520596) Treponema succinifaciens DSM 2489 10431541 YP_004365619.1 CDS Tresu_1418 NC_015385.1 1520616 1520942 R hypothetical protein complement(1520616..1520942) Treponema succinifaciens DSM 2489 10431542 YP_004365620.1 CDS Tresu_1420 NC_015385.1 1521463 1522329 D InterPro IPR010106; KEGG: tde:TDE1891 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP01784; TIGRFAM: conserved hypothetical protein (ATPase AAA transposase or invertase); hypothetical protein 1521463..1522329 Treponema succinifaciens DSM 2489 10431544 YP_004365621.1 CDS Tresu_1421 NC_015385.1 1522703 1523653 D COGs: COG0078 ornithine carbamoyltransferase; HAMAP: ornithine carbamoyltransferase; InterPro IPR006132:IPR006131:IPR002292; KEGG: fno:Fnod_0704 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; PRIAM: ornithine carbamoyltransferase; SPTR: ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase; ornithine carbamoyltransferase 1522703..1523653 Treponema succinifaciens DSM 2489 10431546 YP_004365622.1 CDS Tresu_1422 NC_015385.1 1523682 1524125 D KEGG: tde:TDE1480 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1523682..1524125 Treponema succinifaciens DSM 2489 10431547 YP_004365623.1 CDS Tresu_1423 NC_015385.1 1524215 1525198 D COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: tde:TDE1479 DHH superfamily protein, subfamily 1; PFAM: phosphoesterase, RecJ-like; phosphoesterase, DHHA1; SPTR: DHH superfamily protein, subfamily 1; PFAM: DHH family; DHHA1 domain; phosphoesterase RecJ domain-containing protein 1524215..1525198 Treponema succinifaciens DSM 2489 10431548 YP_004365624.1 CDS Tresu_1424 NC_015385.1 1525473 1526387 D KEGG: tde:TDE2272 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1525473..1526387 Treponema succinifaciens DSM 2489 10431549 YP_004365625.1 CDS Tresu_1425 NC_015385.1 1526588 1527718 D COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein 1526588..1527718 Treponema succinifaciens DSM 2489 10431550 YP_004365626.1 CDS Tresu_1426 NC_015385.1 1527828 1528484 D COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: nucleoside-triphosphatase; InterPro IPR002637:IPR020922; KEGG: tde:TDE2271 HAM1 protein; PFAM: Ham1-like protein; PRIAM: nucleoside-triphosphatase; SPTR: nucleoside-triphosphatase; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; nucleoside-triphosphatase rdgB 1527828..1528484 Treponema succinifaciens DSM 2489 10431551 YP_004365627.1 CDS Tresu_1427 NC_015385.1 1528477 1531161 D COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708; KEGG: tde:TDE1436 inner membrane protein; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Inner membrane protein; TIGRFAM: Membrane insertion protein, OxaA/YidC; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; YidC/Oxa1 family membrane protein insertase 1528477..1531161 Treponema succinifaciens DSM 2489 10431552 YP_004365628.1 CDS Tresu_1428 NC_015385.1 1531178 1532206 D COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: ipo:Ilyop_2681 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1; group 1 glycosyl transferase 1531178..1532206 Treponema succinifaciens DSM 2489 10431553 YP_004365629.1 CDS Tresu_1429 NC_015385.1 1532266 1533705 D COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR017472:IPR017475; KEGG: cyn:Cyan7425_4214 undecaprenyl-phosphate galactose phosphotransferase, WbaP; PFAM: Bacterial sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; UDP-phosphate galactose phosphotransferase 1532266..1533705 Treponema succinifaciens DSM 2489 10431554 YP_004365630.1 CDS Tresu_1430 NC_015385.1 1533709 1535325 D KEGG: tde:TDE0688 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1533709..1535325 Treponema succinifaciens DSM 2489 10431555 YP_004365631.1 CDS Tresu_1431 NC_015385.1 1535327 1536442 R KEGG: tde:TDE1264 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1535327..1536442) Treponema succinifaciens DSM 2489 10431556 YP_004365632.1 CDS Tresu_1432 NC_015385.1 1536447 1537544 R COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; InterPro IPR004588; KEGG: tde:TDE1265 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(1536447..1537544) Treponema succinifaciens DSM 2489 10431557 YP_004365633.1 CDS Tresu_1433 NC_015385.1 1537767 1538189 R InterPro IPR002379; KEGG: tde:TDE1679 V-type ATP synthase subunit K; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: V-type ATP synthase subunit K; PFAM: ATP synthase subunit C; H+transporting two-sector ATPase subunit C complement(1537767..1538189) Treponema succinifaciens DSM 2489 10431558 YP_004365634.1 CDS Tresu_1434 NC_015385.1 1538262 1540193 R COGs: COG1269 H+-ATPase subunit I; InterPro IPR002490; KEGG: tpp:TPASS_0429 V-type ATP synthase subunit I; PFAM: ATPase, V0/A0 complex, 116kDa subunit; SPTR: V-type ATP synthase subunit I 1; PFAM: V-type ATPase 116kDa subunit family; V-type ATPase 116 kDa subunit complement(1538262..1540193) Treponema succinifaciens DSM 2489 10431559 YP_004365635.1 CDS Tresu_1435 NC_015385.1 1540193 1541377 R COGs: COG1156 H+-ATPase subunit B; InterPro IPR004100:IPR000194:IPR002699; KEGG: tde:TDE1682 V-type ATP synthase subunit B; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, V1/A1 complex, subunit D; SPTR: V-type ATP synthase beta chain; TIGRFAM: ATPase, V1/A1 complex, subunit D; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase subunit D; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D; V-type ATPase subunit D complement(1540193..1541377) Treponema succinifaciens DSM 2489 10431560 YP_004365636.1 CDS Tresu_1436 NC_015385.1 1541377 1543146 R COGs: COG1155 H+-ATPase subunit A; HAMAP: V-type ATP synthase catalytic subunit A/alpha; InterPro IPR004100:IPR000194:IPR022878; KEGG: tde:TDE1683 V-type ATP synthase subunit A; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; PRIAM: H(+)-transporting two-sector ATPase; SPTR: V-type ATP synthase alpha chain; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; V-type ATP synthase subunit alpha complement(1541377..1543146) Treponema succinifaciens DSM 2489 10431561 YP_004365637.1 CDS Tresu_1437 NC_015385.1 1543143 1543691 R KEGG: tde:TDE1380 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF2764); hypothetical protein complement(1543143..1543691) Treponema succinifaciens DSM 2489 10431562 YP_004365638.1 CDS Tresu_1438 NC_015385.1 1543691 1544428 R KEGG: tde:TDE1381 V-type ATP synthase subunit E; SPTR: V-type ATP synthase subunit E; V-type ATP synthase subunit E complement(1543691..1544428) Treponema succinifaciens DSM 2489 10431563 YP_004365639.1 CDS Tresu_1439 NC_015385.1 1544465 1545505 R COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: pst:PSPTO_2636 aldose 1-epimerase; PFAM: Aldose 1-epimerase; PRIAM: Aldose 1-epimerase; SPTR: Aldose 1-epimerase; PFAM: Aldose 1-epimerase; aldose-1-epimerase complement(1544465..1545505) Treponema succinifaciens DSM 2489 10431564 YP_004365640.1 CDS Tresu_1440 NC_015385.1 1545602 1546180 R KEGG: tde:TDE2680 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1545602..1546180) Treponema succinifaciens DSM 2489 10431565 YP_004365641.1 CDS Tresu_1441 NC_015385.1 1546187 1546525 R KEGG: tde:TDE2681 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1546187..1546525) Treponema succinifaciens DSM 2489 10431566 YP_004365642.1 CDS Tresu_1442 NC_015385.1 1546631 1547926 R hypothetical protein complement(1546631..1547926) Treponema succinifaciens DSM 2489 10431567 YP_004365643.1 CDS Tresu_1443 NC_015385.1 1547928 1548761 R KEGG: ssm:Spirs_0717 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1547928..1548761) Treponema succinifaciens DSM 2489 10431568 YP_004365644.1 CDS Tresu_1444 NC_015385.1 1548766 1550052 R COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: tde:TDE1850 ABC transporter, permease protein, ATPase AAA; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: ABC transporter, permease protein, ATPase AAA; PFAM: Predicted permease; hypothetical protein complement(1548766..1550052) Treponema succinifaciens DSM 2489 10431569 YP_004365645.1 CDS Tresu_1445 NC_015385.1 1550052 1551473 R COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: ssm:Spirs_0715 protein of unknown function DUF214; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: Putative uncharacterized protein; PFAM: Predicted permease; hypothetical protein complement(1550052..1551473) Treponema succinifaciens DSM 2489 10431570 YP_004365646.1 CDS Tresu_1446 NC_015385.1 1551808 1553490 R COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891:IPR013709; KEGG: caa:Caka_1596 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; PRIAM: 2-isopropylmalate synthase; SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; SPTR: 2-isopropylmalate synthase; PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; TIGRFAM: 2-isopropylmalate synthase, yeast type; 2-isopropylmalate synthase complement(1551808..1553490) Treponema succinifaciens DSM 2489 10431571 YP_004365647.1 CDS Tresu_1447 NC_015385.1 1553741 1555969 R KEGG: cpi:Cpin_1999 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1553741..1555969) Treponema succinifaciens DSM 2489 10431572 YP_004365648.1 CDS Tresu_1448 NC_015385.1 1556053 1558818 D COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765; KEGG: swd:Swoo_0261 peptidase M16 domain-containing protein; PFAM: peptidase M16, N-terminal; SPTR: peptidase M16 domain protein; PFAM: peptidase M16 inactive domain; Insulinase (peptidase family M16); peptidase M16 domain-containing protein 1556053..1558818 Treponema succinifaciens DSM 2489 10431573 YP_004365649.1 CDS Tresu_1449 NC_015385.1 1558794 1559417 R COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: cpr:CPR_2319 5-formyltetrahydrofolate cyclo-ligase family protein; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase family protein; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase; 5-formyltetrahydrofolate cyclo-ligase complement(1558794..1559417) Treponema succinifaciens DSM 2489 10431574 YP_004365650.1 CDS Tresu_1450 NC_015385.1 1559495 1560778 D COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006674:IPR003607; KEGG: clj:CLJU_c04120 ATPase AAA deoxyguanosinetriphosphate triphosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, ATPase AAA; metal-dependent phosphohydrolase HD sub domain-containing protein 1559495..1560778 Treponema succinifaciens DSM 2489 10431575 YP_004365651.1 CDS Tresu_1451 NC_015385.1 1560793 1561233 D InterPro IPR005358; KEGG: tde:TDE1540 hypothetical protein; PFAM: Uncharacterised protein family UPF0153; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153); hypothetical protein 1560793..1561233 Treponema succinifaciens DSM 2489 10431576 YP_004365652.1 CDS Tresu_1452 NC_015385.1 1561441 1561941 D KEGG: pjd:Pjdr2_4730 arabinogalactan endo-1,4-beta-galactosidase; SPTR: arabinogalactan endo-1,4-beta-galactosidase; arabinogalactan endo-1,4-beta-galactosidase 1561441..1561941 Treponema succinifaciens DSM 2489 10431577 YP_004365653.1 CDS Tresu_1453 NC_015385.1 1562014 1562898 D KEGG: tva:TVAG_189160 chitinase; SPTR: Chitinase, ATPase AAA; hypothetical protein 1562014..1562898 Treponema succinifaciens DSM 2489 10431578 YP_004365654.1 CDS Tresu_1454 NC_015385.1 1563002 1564237 D COGs: COG3867 arabinogalactan endo-1 4-beta-galactosidase; InterPro IPR011683; KEGG: tna:CTN_1370 arabinogalactan endo-1,4-beta-galactosidase precursor; PFAM: glycosyl hydrolase 53; PRIAM: arabinogalactan endo-1,4-beta-galactosidase; SPTR: arabinogalactan endo-1,4-beta-galactosidase; PFAM: glycosyl hydrolase family 53; arabinogalactan endo-1,4-beta-galactosidase 1563002..1564237 Treponema succinifaciens DSM 2489 10431579 YP_004365655.1 CDS Tresu_1455 NC_015385.1 1564277 1565914 R COGs: COG4249 Uncharacterized protein containing caspase domain; InterPro IPR011600; KEGG: glo:Glov_1608 peptidase C14 caspase catalytic subunit P20; PFAM: peptidase C14, caspase catalytic; SPTR: Caspase domain protein; PFAM: Caspase domain; peptidase C14 caspase catalytic subunit p20 complement(1564277..1565914) Treponema succinifaciens DSM 2489 10431580 YP_004365656.1 CDS Tresu_1457 NC_015385.1 1566509 1568341 R COGs: COG4249 Uncharacterized protein containing caspase domain; InterPro IPR011600:IPR006597; KEGG: app:CAP2UW1_0518 peptidase C14 caspase catalytic subunit P20; PFAM: peptidase C14, caspase catalytic; Sel1-like; SMART: Sel1-like; SPTR: peptidase C14 caspase catalytic subunit p20; PFAM: Caspase domain; Sel1 repeat; peptidase C14 caspase catalytic subunit p20 complement(1566509..1568341) Treponema succinifaciens DSM 2489 10431582 YP_004365657.1 CDS Tresu_1458 NC_015385.1 1568363 1569274 R hypothetical protein complement(1568363..1569274) Treponema succinifaciens DSM 2489 10431583 YP_004365658.1 CDS Tresu_1459 NC_015385.1 1569222 1569398 R hypothetical protein complement(1569222..1569398) Treponema succinifaciens DSM 2489 10431584 YP_004365659.1 CDS Tresu_1460 NC_015385.1 1569423 1570385 R hypothetical protein complement(1569423..1570385) Treponema succinifaciens DSM 2489 10431585 YP_004365660.1 CDS Tresu_1461 NC_015385.1 1570508 1571878 R SPTR: Putative uncharacterized protein; hypothetical protein complement(1570508..1571878) Treponema succinifaciens DSM 2489 10431586 YP_004365661.1 CDS Tresu_1462 NC_015385.1 1571897 1572547 R SPTR: Putative uncharacterized protein; hypothetical protein complement(1571897..1572547) Treponema succinifaciens DSM 2489 10431587 YP_004365662.1 CDS Tresu_1463 NC_015385.1 1572663 1572980 D InterPro IPR001387; KEGG: tde:TDE2445 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; PFAM: Helix-turn-helix; hypothetical protein 1572663..1572980 Treponema succinifaciens DSM 2489 10431588 YP_004365663.1 CDS Tresu_1464 NC_015385.1 1573710 1574468 D hypothetical protein 1573710..1574468 Treponema succinifaciens DSM 2489 10431589 YP_004365664.1 CDS Tresu_1465 NC_015385.1 1574545 1576515 R COGs: COG0021 Transketolase; InterPro IPR005474:IPR005475:IPR005476:IPR005478; KEGG: tde:TDE1308 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Transketolase; SMART: Transketolase-like, pyrimidine-binding domain; SPTR: Transketolase; TIGRFAM: Transketolase, bacterial-like; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast; transketolase complement(1574545..1576515) Treponema succinifaciens DSM 2489 10431590 YP_004365665.1 CDS Tresu_1466 NC_015385.1 1576617 1577093 R COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178; KEGG: ppd:Ppro_0069 ATPase AAA PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; SPTR: Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS IIA-like nitrogen-regulatory protein PtsN complement(1576617..1577093) Treponema succinifaciens DSM 2489 10431591 YP_004365666.1 CDS Tresu_1467 NC_015385.1 1577120 1578640 R KEGG: tde:TDE1307 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1577120..1578640) Treponema succinifaciens DSM 2489 10431592 YP_004365667.1 CDS Tresu_1468 NC_015385.1 1578743 1579267 D COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: dap:Dacet_1946 nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase; PFAM: Nitroreductase family; nitroreductase 1578743..1579267 Treponema succinifaciens DSM 2489 10431593 YP_004365668.1 CDS Tresu_1469 NC_015385.1 1579360 1581096 R COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012001:IPR012000:IPR011766:IPR012846; KEGG: dar:Daro_1620 acetolactate synthase catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Acetolactate synthase; SPTR: Acetolactate synthase; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit, biosynthetic type complement(1579360..1581096) Treponema succinifaciens DSM 2489 10431594 YP_004365669.1 CDS Tresu_1470 NC_015385.1 1581452 1582117 D KEGG: tde:TDE1093 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1581452..1582117 Treponema succinifaciens DSM 2489 10431595 YP_004365670.1 CDS Tresu_1471 NC_015385.1 1582129 1583718 D COGs: COG1543 conserved hypothetical protein; InterPro IPR004300:IPR015293; KEGG: ssm:Spirs_1542 domain of unknown function DUF1957; PFAM: Domain of unknown function DUF1957; glycoside hydrolase, family 57, N-terminal; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1957); glycosyl hydrolase family 57; hypothetical protein 1582129..1583718 Treponema succinifaciens DSM 2489 10431596 YP_004365671.1 CDS Tresu_1472 NC_015385.1 1583808 1586525 D COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708; KEGG: tde:TDE1436 inner membrane protein; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Inner membrane protein; PFAM: 60Kd inner membrane protein; Sulfatase; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; 60 kDa inner membrane insertion protein 1583808..1586525 Treponema succinifaciens DSM 2489 10431597 YP_004365672.1 CDS Tresu_1473 NC_015385.1 1586522 1587760 D InterPro IPR007554; KEGG: tde:TDE1435 hypothetical protein; PFAM: CDP-glycerol glycerophosphotransferase; SPTR: Putative uncharacterized protein; PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP- glycerol:poly(glycerophosphate)glycerophosphotransferase 1586522..1587760 Treponema succinifaciens DSM 2489 10431598 YP_004365673.1 CDS Tresu_1474 NC_015385.1 1587794 1589764 D COGs: COG0079 histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: ahe:Arch_0083 transcriptional regulator, MarR family; PFAM: Aminotransferase, class I/classII; PRIAM: histidinol-phosphate transaminase; SPTR: Putative uncharacterized protein; PFAM: Nucleotidyl transferase; Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; histidinol-phosphate transaminase 1587794..1589764 Treponema succinifaciens DSM 2489 10431599 YP_004365674.1 CDS Tresu_1475 NC_015385.1 1589823 1591178 R InterPro IPR014867; KEGG: bfr:BF1549 hypothetical protein; PFAM: Spore coat protein CotH; SPTR: Putative uncharacterized protein; PFAM: CotH protein; spore coat protein CotH complement(1589823..1591178) Treponema succinifaciens DSM 2489 10431600 YP_004365675.1 CDS Tresu_1476 NC_015385.1 1591227 1591901 R KEGG: bpb:bpr_I0451 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1591227..1591901) Treponema succinifaciens DSM 2489 10431601 YP_004365676.1 CDS Tresu_1477 NC_015385.1 1591951 1592664 R InterPro IPR018966; KEGG: bpb:bpr_I0450 hypothetical protein; PFAM: VTC domain; SPTR: VTC domain; PFAM: VTC domain; VTC domain-containing protein complement(1591951..1592664) Treponema succinifaciens DSM 2489 10431602 YP_004365677.1 CDS Tresu_1478 NC_015385.1 1592810 1594045 D InterPro IPR014867; KEGG: bfr:BF1549 hypothetical protein; PFAM: Spore coat protein CotH; SPTR: Putative uncharacterized protein; PFAM: CotH protein; spore coat protein CotH 1592810..1594045 Treponema succinifaciens DSM 2489 10431603 YP_004365678.1 CDS Tresu_1479 NC_015385.1 1594142 1594843 D COGs: COG0822 NifU homolog involved in Fe-S cluster formation; KEGG: ere:EUBREC_2146 hypothetical protein; SPTR: NifU homolog involved in Fe-S cluster formation; PFAM: NifU-like N terminal domain; hypothetical protein 1594142..1594843 Treponema succinifaciens DSM 2489 10431604 YP_004365679.1 CDS Tresu_1480 NC_015385.1 1594855 1595901 D KEGG: pru:PRU_0687 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1594855..1595901 Treponema succinifaciens DSM 2489 10431605 YP_004365680.1 CDS Tresu_1482 NC_015385.1 1597079 1599664 R COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176:IPR003959:IPR013093:IPR019489:IPR 003593:IPR017730; KEGG: bpo:BP951000_2092 ATP-dependent Clp protease ATP-binding subunit ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: Chaperonin ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB; ATP-dependent chaperone ClpB complement(1597079..1599664) Treponema succinifaciens DSM 2489 10431607 YP_004365681.1 CDS Tresu_1483 NC_015385.1 1599726 1600907 R KEGG: bpb:bpr_I1006 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1599726..1600907) Treponema succinifaciens DSM 2489 10431608 YP_004365682.1 CDS Tresu_1484 NC_015385.1 1601025 1601246 R hypothetical protein complement(1601025..1601246) Treponema succinifaciens DSM 2489 10431609 YP_004365683.1 CDS Tresu_1485 NC_015385.1 1601288 1604272 R COGs: COG1026 Zn-dependent peptidase insulinase-like; InterPro IPR007863:IPR013578; KEGG: tde:TDE1865 M16 family peptidase; PFAM: peptidase M16, C-terminal; peptidase M16C associated; SPTR: peptidase, M16 family; PFAM: peptidase M16C associated; peptidase M16 inactive domain; Insulinase (peptidase family M16); peptidase M16 domain-containing protein complement(1601288..1604272) Treponema succinifaciens DSM 2489 10431610 YP_004365684.1 CDS Tresu_1486 NC_015385.1 1604269 1605543 R COGs: COG1536 flagellar motor switch protein; InterPro IPR023087; KEGG: tde:TDE1285 flagellar motor switch protein FliG, ATPase AAA; PFAM: flagellar motor switch protein FliG, C-terminal; SPTR: flagellar motor switch protein; PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG; flagellar motor switch protein FliG, C-terminal protein complement(1604269..1605543) Treponema succinifaciens DSM 2489 10431611 YP_004365685.1 CDS Tresu_1487 NC_015385.1 1605696 1607183 D COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478:IPR011782; KEGG: tpp:TPASS_0841 periplasmic serine protease DO; PFAM: peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: Periplasmic serine protease DO; TIGRFAM: peptidase S1C, Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; protease Do 1605696..1607183 Treponema succinifaciens DSM 2489 10431612 YP_004365686.1 CDS Tresu_1488 NC_015385.1 1607473 1608045 D COGs: COG1971 membrane protein; HAMAP: Uncharacterised protein family UPF0059; InterPro IPR003810:IPR022929; KEGG: ccb:Clocel_1492 hypothetical protein; PFAM: Domain of unknown function DUF204; SPTR: UPF0059 membrane protein COPEUT_01650; manually curated; PFAM: Domain of unknown function DUF; hypothetical protein 1607473..1608045 Treponema succinifaciens DSM 2489 10431613 YP_004365687.1 CDS Tresu_1490 NC_015385.1 1609043 1610080 R COGs: COG2502 asparagine synthetase A; HAMAP: aspartate--ammonia ligase; InterPro IPR004618; KEGG: pru:PRU_1711 aspartate--ammonia ligase; PFAM: aspartate--ammonia ligase; PRIAM: aspartate--ammonia ligase; SPTR: aspartate--ammonia ligase; TIGRFAM: aspartate--ammonia ligase; PFAM: aspartate-ammonia ligase; TIGRFAM: aspartate--ammonia ligase, AsnA-type; aspartate--ammonia ligase complement(1609043..1610080) Treponema succinifaciens DSM 2489 10431615 YP_004365688.1 CDS Tresu_1491 NC_015385.1 1610121 1611629 R COGs: COG4468 Galactose-1-phosphate uridyltransferase; InterPro IPR005849:IPR005850:IPR000766; KEGG: bpb:bpr_I2842 galactose-1-phosphate uridylyltransferase GalT; PFAM: Galactose-1-phosphate uridyl transferase, C-terminal; Galactose-1-phosphate uridyl transferase, N-terminal; PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase; SPTR: Putative uncharacterized protein; TIGRFAM: Galactose-1-phosphate uridyl transferase, class II; PFAM: Galactose-1-phosphate uridyl transferase, C-terminal domain; Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 2; galactose-1-phosphate uridylyltransferase complement(1610121..1611629) Treponema succinifaciens DSM 2489 10431616 YP_004365689.1 CDS Tresu_1492 NC_015385.1 1611753 1612595 D COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR001604:IPR020821; KEGG: cts:Ctha_1807 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; Extracellular Endonuclease, subunit A; SPTR: DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 1611753..1612595 Treponema succinifaciens DSM 2489 10431617 YP_004365690.1 CDS Tresu_1493 NC_015385.1 1613034 1614212 D COGs: COG2843 Putative protein of poly-gamma-glutamate biosynthesis (capsule formation); InterPro IPR019079; KEGG: emi:Emin_0760 hypothetical protein; PFAM: Capsule synthesis protein, CapA; SMART: Capsule synthesis protein, CapA; SPTR: Putative uncharacterized protein; PFAM: Bacterial capsule synthesis protein PGA_cap; capsule synthesis protein CapA 1613034..1614212 Treponema succinifaciens DSM 2489 10431618 YP_004365691.1 CDS Tresu_1494 NC_015385.1 1614203 1616785 D COGs: COG1643 HrpA-like helicase; InterPro IPR001650:IPR007502:IPR011709:IPR014001; KEGG: tde:TDE1654 ATP-dependent helicase HrpA, ATPase AAA; PFAM: Helicase, C-terminal; Helicase-associated domain; Domain of unknown function DUF1605; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain; SPTR: ATP-dependent helicase HrpA, ATPase AAA; PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); Domain of unknown function (DUF1605); DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpA; helicase 1614203..1616785 Treponema succinifaciens DSM 2489 10431619 YP_004365692.1 CDS Tresu_1495 NC_015385.1 1616961 1617875 D KEGG: tde:TDE1891 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein (ATPase AAA transposase or invertase); hypothetical protein 1616961..1617875 Treponema succinifaciens DSM 2489 10431620 YP_004365693.1 CDS Tresu_1496 NC_015385.1 1617878 1619740 R COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR000531; KEGG: cat:CA2559_12508 ATPase AAA TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor, ATPase AAA; TonB-dependent receptor complement(1617878..1619740) Treponema succinifaciens DSM 2489 10431621 YP_004365694.1 CDS Tresu_1497 NC_015385.1 1619812 1620306 R KEGG: bhy:BHWA1_00394 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1619812..1620306) Treponema succinifaciens DSM 2489 10431622 YP_004365695.1 CDS Tresu_1498 NC_015385.1 1620399 1621073 R hypothetical protein complement(1620399..1621073) Treponema succinifaciens DSM 2489 10431623 YP_004365696.1 CDS Tresu_1499 NC_015385.1 1621048 1621932 R hypothetical protein complement(1621048..1621932) Treponema succinifaciens DSM 2489 10431624 YP_004365697.1 CDS Tresu_1500 NC_015385.1 1622255 1623559 R hypothetical protein complement(1622255..1623559) Treponema succinifaciens DSM 2489 10431625 YP_004365698.1 CDS Tresu_1501 NC_015385.1 1623749 1624402 D KEGG: sta:STHERM_c00910 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1623749..1624402 Treponema succinifaciens DSM 2489 10431626 YP_004365699.1 CDS Tresu_1502 NC_015385.1 1624399 1625886 R KEGG: tde:TDE0840 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1624399..1625886) Treponema succinifaciens DSM 2489 10431627 YP_004365700.1 CDS Tresu_1503 NC_015385.1 1626002 1626634 R COGs: COG0563 adenylate kinase and related kinase; HAMAP: adenylate kinase; InterPro IPR000850:IPR007862:IPR006259; KEGG: tde:TDE1112 adenylate kinase; PFAM: adenylate kinase; adenylate kinase, active site lid domain; SPTR: adenylate kinase; TIGRFAM: adenylate kinase, subfamily; PFAM: adenylate kinase, active site lid; adenylate kinase; TIGRFAM: adenylate kinases; adenylate kinase complement(1626002..1626634) Treponema succinifaciens DSM 2489 10431628 YP_004365701.1 CDS Tresu_1504 NC_015385.1 1626712 1627944 R COGs: COG0162 Tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase, class Ib; InterPro IPR002305:IPR002942:IPR002307; KEGG: bpu:BPUM_2615 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; PRIAM: Tyrosine--tRNA ligase; SMART: RNA-binding S4; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase complement(1626712..1627944) Treponema succinifaciens DSM 2489 10431629 YP_004365702.1 CDS Tresu_1505 NC_015385.1 1628388 1628621 D KEGG: gme:Gmet_A3570 CopG-like DNA-binding protein; SPTR: CopG-like DNA-binding protein; CopG-like DNA-binding protein 1628388..1628621 Treponema succinifaciens DSM 2489 10431632 YP_004365703.1 CDS Tresu_1506 NC_015385.1 1628652 1629125 R COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871:IPR011341; KEGG: bpb:bpr_I0055 FeS assembly protein SufE; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; SPTR: FeS assembly protein SufE; TIGRFAM: SUF system FeS cluster assembly, SufU scaffold; PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family; NifU family SUF system FeS assembly protein complement(1628652..1629125) Treponema succinifaciens DSM 2489 10431633 YP_004365704.1 CDS Tresu_1507 NC_015385.1 1629152 1630396 R COGs: COG0520 Selenocysteine lyase; InterPro IPR000192:IPR010970; KEGG: bpb:bpr_I0054 cysteine desulfurase SufS; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase SufS; TIGRFAM: Cysteine desulfurase, SufS; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily; SufS subfamily cysteine desulfurase complement(1629152..1630396) Treponema succinifaciens DSM 2489 10431634 YP_004365705.1 CDS Tresu_1508 NC_015385.1 1630407 1631459 R COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825; KEGG: bpb:bpr_I0053 FeS assembly protein SufD; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: ABC-type transport system involved in Fe-S cluster assembly, permease component; PFAM: Uncharacterized protein family (UPF0051); SufBD protein complement(1630407..1631459) Treponema succinifaciens DSM 2489 10431635 YP_004365706.1 CDS Tresu_1509 NC_015385.1 1631470 1632885 R COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR010231; KEGG: bpb:bpr_I0052 FeS assembly protein SufB; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: Putative uncharacterized protein; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB; FeS assembly protein SufB complement(1631470..1632885) Treponema succinifaciens DSM 2489 10431636 YP_004365707.1 CDS Tresu_1510 NC_015385.1 1632900 1633739 R COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003439:IPR003593:IPR010230; KEGG: bpb:bpr_I0051 FeS assembly ATPase SufC; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC; FeS assembly ATPase SufC complement(1632900..1633739) Treponema succinifaciens DSM 2489 10431637 YP_004365708.1 CDS Tresu_1511 NC_015385.1 1634425 1635591 D InterPro IPR005532; KEGG: tde:TDE2101 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: Putative uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme; sulfatase-modifying factor protein 1634425..1635591 Treponema succinifaciens DSM 2489 10431638 YP_004365709.1 CDS Tresu_1512 NC_015385.1 1635746 1636135 R SPTR: Rhs-related protein; PFAM: protein of unknown function (DUF2778); hypothetical protein complement(1635746..1636135) Treponema succinifaciens DSM 2489 10431639 YP_004365710.1 CDS Tresu_1513 NC_015385.1 1636824 1638404 R hypothetical protein complement(1636824..1638404) Treponema succinifaciens DSM 2489 10431641 YP_004365711.1 CDS Tresu_1514 NC_015385.1 1638763 1640070 R hypothetical protein complement(1638763..1640070) Treponema succinifaciens DSM 2489 10431642 YP_004365712.1 CDS Tresu_1515 NC_015385.1 1640102 1640344 R hypothetical protein complement(1640102..1640344) Treponema succinifaciens DSM 2489 10431643 YP_004365713.1 CDS Tresu_1516 NC_015385.1 1640465 1641187 R COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: cno:NT01CX_0934 ABC transporter; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: ABC transporter; sulfate-transporting ATPase complement(1640465..1641187) Treponema succinifaciens DSM 2489 10431644 YP_004365714.1 CDS Tresu_1517 NC_015385.1 1641174 1641842 R COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515:IPR010065; KEGG: cpy:Cphy_0848 polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Putative uncharacterized protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; polar amino acid ABC transporter inner membrane subunit complement(1641174..1641842) Treponema succinifaciens DSM 2489 10431645 YP_004365715.1 CDS Tresu_1518 NC_015385.1 1641858 1642631 R COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: ere:EUBREC_1489 amino acid ABC transporter, permease protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; SPTR: Putative uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 3; ABC transporter substrate-binding protein complement(1641858..1642631) Treponema succinifaciens DSM 2489 10431646 YP_004365716.1 CDS Tresu_1519 NC_015385.1 1642742 1644124 R COGs: COG0621 2-methylthioadenine synthetase; InterProIPR013848:IPR007197:IPR002792:IPR006638:IPR 005839:IPR006463; KEGG: tpp:TPASS_0754 (dimethylallyl)adenosine tRNA methylthiotransferase; PFAM: methylthiotransferase, N-terminal; Radical SAM; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: tRNA-I(6)A37 thiotransferase enzyme MiaB; TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB; methylthiotransferase; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; radical SAM methylthiotransferase, MiaB/RimO family; tRNA-i(6)A37 thiotransferase enzyme MiaB complement(1642742..1644124) Treponema succinifaciens DSM 2489 10431647 YP_004365717.1 CDS Tresu_1520 NC_015385.1 1644556 1644915 D InterPro IPR004193; KEGG: sta:STHERM_c15960 hypothetical protein; PFAM: glycoside hydrolase, family 13, N-terminal; SPTR: Putative uncharacterized protein; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); glycoside hydrolase family protein 1644556..1644915 Treponema succinifaciens DSM 2489 10431648 YP_004365718.1 CDS Tresu_1521 NC_015385.1 1645069 1645854 R COGs: COG1469 conserved hypothetical protein; InterPro IPR003801; KEGG: sta:STHERM_c09930 hypothetical protein; PFAM: GTP cyclohydrolase FolE2/MptA; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase folE2; TIGRFAM: GTP cyclohydrolase FolE2/MptA; PFAM: Uncharacterized ACR, COG1469; TIGRFAM: TIGR00294 family protein; hypothetical protein complement(1645069..1645854) Treponema succinifaciens DSM 2489 10431649 YP_004365719.1 CDS Tresu_1522 NC_015385.1 1645847 1646731 R COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR020630:IPR020631:IPR000672; KEGG: tde:TDE0013 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: methenyltetrahydrofolate cyclohydrolase; SPTR: Bifunctional protein folD; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; bifunctional protein folD complement(1645847..1646731) Treponema succinifaciens DSM 2489 10431650 YP_004365720.1 CDS Tresu_1523 NC_015385.1 1646936 1647619 D KEGG: ssm:Spirs_2430 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1646936..1647619 Treponema succinifaciens DSM 2489 10431651 YP_004365721.1 CDS Tresu_1524 NC_015385.1 1647640 1648836 D hypothetical protein 1647640..1648836 Treponema succinifaciens DSM 2489 10431652 YP_004365722.1 CDS Tresu_1525 NC_015385.1 1648846 1651263 D COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003959:IPR003593; KEGG: ssm:Spirs_1297 ATPase AAA central domain protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: Recombination factor protein RarA; PFAM: MgsA AAA+ ATPase C terminal; Holliday junction DNA helicase ruvB N-terminus; ATPase AAA central domain-containing protein 1648846..1651263 Treponema succinifaciens DSM 2489 10431653 YP_004365723.1 CDS Tresu_1526 NC_015385.1 1651260 1651994 D COGs: COG4123 O-methyltransferase; InterPro IPR013216; KEGG: cpy:Cphy_3911 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: Putative uncharacterized protein; PFAM: methyltransferase small domain; methyltransferase type 11 1651260..1651994 Treponema succinifaciens DSM 2489 10431654 YP_004365724.1 CDS Tresu_1527 NC_015385.1 1652003 1652932 D COGs: COG1242 Fe-S oxidoreductase; InterPro IPR007197:IPR006638:IPR005911; KEGG: csh:Closa_3205 hypothetical protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM protein, TIGR01212 family; TIGRFAM: Conserved hypothetical protein CHP01212; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family; hypothetical protein 1652003..1652932 Treponema succinifaciens DSM 2489 10431655 YP_004365725.1 CDS Tresu_1528 NC_015385.1 1652981 1654048 D COGs: COG0057 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020828:IPR020829:IPR006424; KEGG: csh:Closa_0829 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; SPTR: Putative uncharacterized protein; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase 1652981..1654048 Treponema succinifaciens DSM 2489 10431656 YP_004365726.1 CDS Tresu_1529 NC_015385.1 1654421 1655443 R COGs: COG0451 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cth:Cthe_1361 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate 4-epimerase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family; UDP-glucuronate 4-epimerase complement(1654421..1655443) Treponema succinifaciens DSM 2489 10431657 YP_004365727.1 CDS Tresu_1530 NC_015385.1 1655621 1656619 D InterPro IPR002495; KEGG: fsu:Fisuc_0710 hypothetical protein; PFAM: glycosyl transferase, family 8; SPTR: Putative uncharacterized protein; PFAM: glycosyl transferase family 8; glycosyl transferase family protein 1655621..1656619 Treponema succinifaciens DSM 2489 10431658 YP_004365728.1 CDS Tresu_1531 NC_015385.1 1656640 1658607 R COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: tde:TDE2682 hypothetical protein; PFAM: protein of unknown function DUF342; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF342); hypothetical protein complement(1656640..1658607) Treponema succinifaciens DSM 2489 10431659 YP_004365729.1 CDS Tresu_1532 NC_015385.1 1658616 1659404 R COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterProIPR007627:IPR007624:IPR007630:IPR014284:IPR 012845; KEGG: ssm:Spirs_1586 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma 28 subunit FliA/WhiG complement(1658616..1659404) Treponema succinifaciens DSM 2489 10431660 YP_004365730.1 CDS Tresu_1533 NC_015385.1 1659474 1660214 R hypothetical protein complement(1659474..1660214) Treponema succinifaciens DSM 2489 10431661 YP_004365731.1 CDS Tresu_1534 NC_015385.1 1660277 1661152 R COGs: COG0455 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: tpp:TPASS_0712 ATP-binding protein; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: ATP-binding protein (YlxH-1); PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Cobyrinic acid ac-diamide synthase complement(1660277..1661152) Treponema succinifaciens DSM 2489 10431662 YP_004365732.1 CDS Tresu_1535 NC_015385.1 1661188 1662531 R COGs: COG1419 flagellar GTP-binding protein; InterPro IPR000897:IPR003593; KEGG: ssm:Spirs_1583 flagellar biosynthetic protein FlhF; PFAM: Signal recognition particle, SRP54 subunit, GTPase; SMART: Signal recognition particle, SRP54 subunit, GTPase; ATPase, AAA+ type, core; SPTR: SRP54-type protein, GTPase domain; PFAM: SRP54-type protein, GTPase domain; GTP-binding signal recognition particle SRP54 G- domain-containing protein complement(1661188..1662531) Treponema succinifaciens DSM 2489 10431663 YP_004365733.1 CDS Tresu_1536 NC_015385.1 1662524 1664650 R COGs: COG1298 flagellar biosynthesis pathway component FlhA; InterPro IPR001712; KEGG: ssm:Spirs_1582 flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP; SPTR: flagellar biosynthesis protein FlhA; PFAM: FHIPEP family; TIGRFAM: flagellar biosynthesis protein FlhA; type III secretion FHIPEP protein complement(1662524..1664650) Treponema succinifaciens DSM 2489 10431664 YP_004365734.1 CDS Tresu_1537 NC_015385.1 1664748 1665845 R COGs: COG1377 flagellar biosynthesis pathway component FlhB; InterPro IPR006135:IPR006136; KEGG: tde:TDE0054 flagellar biosynthesis protein FlhB; PFAM: Type III secretion exporter; SPTR: flagellar biosynthetic protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB complement(1664748..1665845) Treponema succinifaciens DSM 2489 10431665 YP_004365735.1 CDS Tresu_1538 NC_015385.1 1665845 1666666 R COGs: COG1684 flagellar biosynthesis pathway component FliR; InterPro IPR002010:IPR006303; KEGG: tde:TDE0053 flagellar biosynthetic protein FliR; PFAM: Type III secretion system inner membrane R protein; SPTR: flagellar biosynthetic protein fliR; TIGRFAM: flagellar biosynthesis protein FliR; PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR complement(1665845..1666666) Treponema succinifaciens DSM 2489 10431666 YP_004365736.1 CDS Tresu_1539 NC_015385.1 1666668 1666937 R COGs: COG1987 flagellar biosynthesis pathway component FliQ; InterPro IPR002191:IPR006305; KEGG: tpp:TPASS_0717 flagellar biosynthetic protein; PFAM: Bacterial export protein FliQ, family 3; SPTR: flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthesis protein FliQ; PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ complement(1666668..1666937) Treponema succinifaciens DSM 2489 10431667 YP_004365737.1 CDS Tresu_1540 NC_015385.1 1666975 1667820 R COGs: COG1338 flagellar biosynthesis pathway component FliP; InterPro IPR005838:IPR005837; KEGG: tpp:TPASS_0718 flagellar biosynthesis protein FliP; PFAM: Type III secretion system inner membrane P protein; SPTR: flagellar biosynthetic protein FliP; TIGRFAM: flagellar transport protein FliP; PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP; flagellar biosynthetic protein FliP complement(1666975..1667820) Treponema succinifaciens DSM 2489 10431668 YP_004365738.1 CDS Tresu_1541 NC_015385.1 1667817 1668482 R KEGG: tde:TDE2761 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: flagellar biosynthesis protein, FliO; hypothetical protein complement(1667817..1668482) Treponema succinifaciens DSM 2489 10431669 YP_004365739.1 CDS Tresu_1542 NC_015385.1 1668604 1669830 R COGs: COG1886 flagellar motor switch/type III secretory pathway protein; InterPro IPR001543:IPR012826; KEGG: tde:TDE2762 flagellar motor switch protein FliY; PFAM: Surface presentation of antigen (SpoA); SPTR: flagellar motor switch protein FliY; TIGRFAM: flagellar motor switch FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN; flagellar motor switch protein FliN complement(1668604..1669830) Treponema succinifaciens DSM 2489 10431670 YP_004365740.1 CDS Tresu_1543 NC_015385.1 1669827 1670861 R COGs: COG1868 flagellar motor switch protein; InterPro IPR001689:IPR001543; KEGG: tpp:TPASS_0721 flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; Surface presentation of antigen (SpoA); SPTR: flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: Surface presentation of antigens (SPOA); flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; flagellar motor switch protein FliM complement(1669827..1670861) Treponema succinifaciens DSM 2489 10431671 YP_004365741.1 CDS Tresu_1544 NC_015385.1 1670885 1671439 R COGs: COG1580 flagellar basal body-associated protein; InterPro IPR005503; KEGG: tpp:TPASS_0722 flagellar basal body-associated protein FliL; PFAM: flagellar basal body-associated protein FliL; SPTR: flagellar basal body-associated protein FliL; PFAM: flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL complement(1670885..1671439) Treponema succinifaciens DSM 2489 10431672 YP_004365742.1 CDS Tresu_1545 NC_015385.1 1671530 1672252 R COGs: COG1360 flagellar motor protein; InterPro IPR006665; KEGG: tde:TDE2765 flagellar motor protein MotB; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: flagellar motor protein MotB; PFAM: OmpA family; OmpA/MotB domain-containing protein complement(1671530..1672252) Treponema succinifaciens DSM 2489 10431673 YP_004365743.1 CDS Tresu_1546 NC_015385.1 1672270 1673052 R COGs: COG1291 flagellar motor component; InterPro IPR002898; KEGG: tde:TDE2766 motility protein A; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Motility protein A; PFAM: MotA/TolQ/ExbB proton channel family; MotA/TolQ/ExbB proton channel complement(1672270..1673052) Treponema succinifaciens DSM 2489 10431674 YP_004365744.1 CDS Tresu_1547 NC_015385.1 1673077 1673268 R COGs: COG1582 Uncharacterized protein possibly involved in motility; InterPro IPR009384; KEGG: tde:TDE2767 flagellar protein-related protein; PFAM: flagellar; SPTR: flagellar protein-related protein; PFAM: flagellar protein (FlbD); flagellar FlbD family protein complement(1673077..1673268) Treponema succinifaciens DSM 2489 10431675 YP_004365745.1 CDS Tresu_1548 NC_015385.1 1673388 1674044 R COGs: COG3294 conserved hypothetical protein; InterPro IPR006674; KEGG: ere:EUBREC_3212 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SPTR: HDIG domain protein; PFAM: HD domain; metal dependent phosphohydrolase complement(1673388..1674044) Treponema succinifaciens DSM 2489 10431676 YP_004365746.1 CDS Tresu_1549 NC_015385.1 1674180 1674881 D COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: ssm:Spirs_3809 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; transcriptional regulator 1674180..1674881 Treponema succinifaciens DSM 2489 10431677 YP_004365747.1 CDS Tresu_1550 NC_015385.1 1674878 1676254 D COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: ssm:Spirs_3808 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; histidine kinase 1674878..1676254 Treponema succinifaciens DSM 2489 10431678 YP_004365748.1 CDS Tresu_1551 NC_015385.1 1676235 1677167 R COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR002627:IPR018022; KEGG: tde:TDE0057 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase; tRNA dimethylallyltransferase complement(1676235..1677167) Treponema succinifaciens DSM 2489 10431679 YP_004365749.1 CDS Tresu_1552 NC_015385.1 1677193 1677414 R KEGG: tde:TDE0056 DNA-directed RNA polymerase, omega subunit, ATPase AAA; SPTR: DNA-directed RNA polymerase, omega subunit, ATPase AAA; PFAM: RNA polymerase Rpb6; DNA-directed RNA polymerase subunit omega complement(1677193..1677414) Treponema succinifaciens DSM 2489 10431680 YP_004365750.1 CDS Tresu_1553 NC_015385.1 1677636 1679027 R COGs: COG1749 flagellar hook protein FlgE; InterPro IPR001444:IPR011491:IPR010930:IPR020013; KEGG: tde:TDE2768 flagellar hook protein FlgE; PFAM: Domain of unknown function DUF1078, C-terminal; flagellar basal body FlaE; flagellar basal body rod protein, N-terminal; SPTR: flagellar hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: flagella basal body rod protein; Domain of unknown function (DUF1078); flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins; flagellar hook-basal body protein complement(1677636..1679027) Treponema succinifaciens DSM 2489 10431681 YP_004365751.1 CDS Tresu_1554 NC_015385.1 1679073 1679522 R COGs: COG1843 flagellar hook capping protein; InterPro IPR005648; KEGG: tde:TDE2769 flagellar basal body rod modification protein; PFAM: flagellar hook capping protein; SPTR: FlgD; PFAM: flagellar hook capping protein; flagellar hook capping protein complement(1679073..1679522) Treponema succinifaciens DSM 2489 10431682 YP_004365752.1 CDS Tresu_1555 NC_015385.1 1679544 1680926 R InterPro IPR021136; KEGG: tde:TDE2770 flagellar hook-length control protein FliK; PFAM: flagellar hook-length control protein-like, C-terminal domain; SPTR: Hook length control protein FliK; PFAM: flagellar hook-length control protein FliK; flagellar hook-length control protein complement(1679544..1680926) Treponema succinifaciens DSM 2489 10431683 YP_004365753.1 CDS Tresu_1556 NC_015385.1 1680981 1681613 R KEGG: tde:TDE1334 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1680981..1681613) Treponema succinifaciens DSM 2489 10431684 YP_004365754.1 CDS Tresu_1557 NC_015385.1 1681717 1683006 R COGs: COG5026 Hexokinase; InterPro IPR022672:IPR022673; KEGG: tpp:TPASS_0505 hexokinase; PFAM: Hexokinase, C-terminal; Hexokinase, N-terminal; PRIAM: Hexokinase; SPTR: Hexokinase; PFAM: Hexokinase; hexokinase complement(1681717..1683006) Treponema succinifaciens DSM 2489 10431685 YP_004365755.1 CDS Tresu_1558 NC_015385.1 1683395 1685215 D COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: ssm:Spirs_4033 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: methyl-accepting chemotaxis sensory transducer with Cache sensor; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer 1683395..1685215 Treponema succinifaciens DSM 2489 10431686 YP_004365756.1 CDS Tresu_1559 NC_015385.1 1685245 1687272 D COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: tde:TDE0903 ATP-dependent DNA helicase PcrA; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; UvrD/REP helicase 1685245..1687272 Treponema succinifaciens DSM 2489 10431687 YP_004365757.1 CDS Tresu_1560 NC_015385.1 1687330 1687896 D hypothetical protein 1687330..1687896 Treponema succinifaciens DSM 2489 10431688 YP_004365758.1 CDS Tresu_1561 NC_015385.1 1687952 1689067 R COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR005888; KEGG: tde:TDE1441 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(1687952..1689067) Treponema succinifaciens DSM 2489 10431689 YP_004365759.1 CDS Tresu_1562 NC_015385.1 1689069 1689668 R COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: bhy:BHWA1_02694 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1689069..1689668) Treponema succinifaciens DSM 2489 10431690 YP_004365760.1 CDS Tresu_1563 NC_015385.1 1689668 1690543 R COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: tde:TDE1440 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form; glucose-1-phosphate thymidylyltransferase complement(1689668..1690543) Treponema succinifaciens DSM 2489 10431691 YP_004365761.1 CDS Tresu_1564 NC_015385.1 1690561 1691424 R InterPro IPR003856; PFAM: lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein complement(1690561..1691424) Treponema succinifaciens DSM 2489 10431692 YP_004365762.1 CDS Tresu_1565 NC_015385.1 1691473 1693230 R InterPro IPR019759; KEGG: tde:TDE2219 hypothetical protein; PFAM: peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I domain protein; PFAM: peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; peptidase S24/S26A/S26B, conserved region complement(1691473..1693230) Treponema succinifaciens DSM 2489 10431693 YP_004365763.1 CDS Tresu_1566 NC_015385.1 1693313 1693681 R hypothetical protein complement(1693313..1693681) Treponema succinifaciens DSM 2489 10431694 YP_004365764.1 CDS Tresu_1567 NC_015385.1 1693711 1696947 R COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: tde:TDE1011 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1693711..1696947) Treponema succinifaciens DSM 2489 10431695 YP_004365765.1 CDS Tresu_1568 NC_015385.1 1696950 1699889 R COGs: COG0178 Excinuclease ATPase subunit; HAMAP: Excinuclease ABC, A subunit; InterPro IPR003439:IPR004602; KEGG: tde:TDE1010 excinuclease ABC subunit A; PFAM: ABC transporter-like; SPTR: Excinuclease ABC subunit A; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit; UvrABC system protein A complement(1696950..1699889) Treponema succinifaciens DSM 2489 10431696 YP_004365766.1 CDS Tresu_1569 NC_015385.1 1699951 1701294 R COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: cce:Ccel_1981 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein; SPTR: Putative uncharacterized protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: ATPase AAA efflux protein, MATE family; MATE efflux family protein complement(1699951..1701294) Treponema succinifaciens DSM 2489 10431697 YP_004365767.1 CDS Tresu_1570 NC_015385.1 1701491 1702426 R COGs: COG0031 Cysteine synthase; InterPro IPR001926:IPR005856:IPR005859; KEGG: bpb:bpr_I1089 cysteine synthase CysK; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Cysteine synthase; SPTR: Cysteine synthase; TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases; cysteine synthase A complement(1701491..1702426) Treponema succinifaciens DSM 2489 10431698 YP_004365768.1 CDS Tresu_1571 NC_015385.1 1702765 1703193 R COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: bpb:bpr_I2468 Rrf2 family transcriptional regulator; PFAM: Transcription regulator Rrf2; SPTR: Iron-sulfur cluster regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein; BadM/Rrf2 family transcriptional regulator complement(1702765..1703193) Treponema succinifaciens DSM 2489 10431699 YP_004365769.1 CDS Tresu_1572 NC_015385.1 1703733 1704440 D COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: lsg:lse_0534 lipase/acylhydrolase, ATPase AAA; PFAM: Lipase, GDSL; SPTR: Lipase/acylhydrolase, ATPase AAA; PFAM: GDSL-like Lipase/acylhydrolase; G-D-S-L family lipolytic protein 1703733..1704440 Treponema succinifaciens DSM 2489 10431700 YP_004365770.1 CDS Tresu_1573 NC_015385.1 1704585 1705028 D KEGG: abu:Abu_0391 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF3015); hypothetical protein 1704585..1705028 Treponema succinifaciens DSM 2489 10431701 YP_004365771.1 CDS Tresu_1574 NC_015385.1 1705030 1707051 D KEGG: gem:GM21_0551 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1705030..1707051 Treponema succinifaciens DSM 2489 10431702 YP_004365772.1 CDS Tresu_1575 NC_015385.1 1707267 1709375 R COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089:IPR004010; KEGG: tde:TDE2783 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; Cache; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: methyl-accepting chemotaxis protein; PFAM: Cache domain; HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(1707267..1709375) Treponema succinifaciens DSM 2489 10431703 YP_004365773.1 CDS Tresu_1576 NC_015385.1 1709865 1710950 R KEGG: tpp:TPASS_0422 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1709865..1710950) Treponema succinifaciens DSM 2489 10431704 YP_004365774.1 CDS Tresu_1577 NC_015385.1 1710926 1712155 R COGs: COG0301 Thiamine biosynthesis ATP pyrophosphatase; HAMAP: Thiamine biosynthesis protein; InterPro IPR003720:IPR004114:IPR020536; KEGG: tde:TDE2568 thiamine biosynthesis protein ThiI; PFAM: Thiamine biosynthesis protein, C-terminal; THUMP; SMART: THUMP; SPTR: Probable tRNA sulfurtransferase; TIGRFAM: Thiamine biosynthesis protein; PFAM: Thiamine biosynthesis protein (ThiI); THUMP domain; TIGRFAM: thiazole biosynthesis/tRNA modification protein ThiI; tRNA sulfurtransferase complement(1710926..1712155) Treponema succinifaciens DSM 2489 10431705 YP_004365775.1 CDS Tresu_1578 NC_015385.1 1712167 1714059 R KEGG: tde:TDE1231 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1712167..1714059) Treponema succinifaciens DSM 2489 10431706 YP_004365776.1 CDS Tresu_1579 NC_015385.1 1714079 1715776 R KEGG: tde:TDE1234 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1714079..1715776) Treponema succinifaciens DSM 2489 10431707 YP_004365777.1 CDS Tresu_1580 NC_015385.1 1715837 1717063 D COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: meh:M301_0256 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1; group 1 glycosyl transferase 1715837..1717063 Treponema succinifaciens DSM 2489 10431708 YP_004365778.1 CDS Tresu_1581 NC_015385.1 1717015 1717884 D COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005273:IPR005122; KEGG: tde:TDE2491 DNA polymerase domain-containing protein; PFAM: Uracil-DNA glycosylase-like; SPTR: DNA polymerase domain protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4; phage SPO1 DNA polymerase-related protein 1717015..1717884 Treponema succinifaciens DSM 2489 10431709 YP_004365779.1 CDS Tresu_1582 NC_015385.1 1717874 1719883 D COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR005259:IPR014001:IPR001650:IPR011545; KEGG: tde:TDE2490 primosomal protein N'; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: Primosomal protein N'; TIGRFAM: Primosomal protein n; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N'; primosomal protein N' 1717874..1719883 Treponema succinifaciens DSM 2489 10431710 YP_004365780.1 CDS Tresu_1583 NC_015385.1 1719988 1721682 R COGs: COG0365 acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873; KEGG: fsu:Fisuc_3031 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Butyrate--CoA ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; butyrate--CoA ligase complement(1719988..1721682) Treponema succinifaciens DSM 2489 10431711 YP_004365781.1 CDS Tresu_1584 NC_015385.1 1721858 1724599 D COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: SecA protein; InterProIPR000185:IPR011115:IPR011130:IPR011116:IPR 004027; KEGG: tde:TDE1898 preprotein translocase subunit SecA; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SEC-C motif; SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SPTR: protein translocase subunit secA; TIGRFAM: SecA protein; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit; protein translocase subunit secA 1721858..1724599 Treponema succinifaciens DSM 2489 10431712 YP_004365782.1 CDS Tresu_1585 NC_015385.1 1724686 1726209 R COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; InterPro IPR004491:IPR003593:IPR013093:IPR019489; KEGG: tde:TDE1211 ATP-dependent protease ATP-binding subunit HslU; PFAM: ATPase, AAA-2; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent protease ATPase subunit HslU; TIGRFAM: Heat shock protein HslU; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent protease HslVU, ATPase subunit; heat shock protein HslVU, ATPase subunit HslU complement(1724686..1726209) Treponema succinifaciens DSM 2489 10431713 YP_004365783.1 CDS Tresu_1586 NC_015385.1 1726211 1726753 R COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; HAMAP: ATP-dependent protease, HslV subunit; InterPro IPR022281:IPR001353; KEGG: tde:TDE1210 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta; SPTR: ATP-dependent protease subunit HslV; TIGRFAM: ATP-dependent protease, HslV subunit; PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; ATP-dependent protease hslV complement(1726211..1726753) Treponema succinifaciens DSM 2489 10431714 YP_004365784.1 CDS Tresu_1587 NC_015385.1 1726787 1727710 R COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107:IPR002104; KEGG: tde:TDE1209 phage integrase family site specific recombinase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase xerC; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; tyrosine recombinase xerC complement(1726787..1727710) Treponema succinifaciens DSM 2489 10431715 YP_004365785.1 CDS Tresu_1588 NC_015385.1 1727703 1729898 R COGs: COG0550 Topoisomerase IA; InterProIPR005733:IPR006171:IPR003601:IPR003602:IPR 013497:IPR013498; KEGG: tde:TDE1208 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial; DNA topoisomerase I complement(1727703..1729898) Treponema succinifaciens DSM 2489 10431716 YP_004365786.1 CDS Tresu_1589 NC_015385.1 1729909 1730865 R COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: tde:TDE1207 DNA processing protein DprA, ATPase AAA; PFAM: DNA recombination-mediator protein A; SPTR: Smf protein; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA; SMF family protein complement(1729909..1730865) Treponema succinifaciens DSM 2489 10431717 YP_004365787.1 CDS Tresu_1590 NC_015385.1 1730904 1731638 R InterPro IPR019734:IPR013105; KEGG: tde:TDE1206 TPR domain-containing protein; PFAM: Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; SPTR: TPR domain protein; PFAM: Tetratricopeptide repeat; hypothetical protein complement(1730904..1731638) Treponema succinifaciens DSM 2489 10431718 YP_004365788.1 CDS Tresu_1591 NC_015385.1 1731656 1732549 R COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107:IPR002104; KEGG: ssm:Spirs_1553 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; tyrosine recombinase xerC complement(1731656..1732549) Treponema succinifaciens DSM 2489 10431719 YP_004365789.1 CDS Tresu_1592 NC_015385.1 1732553 1734040 R COGs: COG0206 Cell division GTPase; InterPro IPR000158:IPR003008:IPR018316; KEGG: ssm:Spirs_1552 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ; cell division protein FtsZ complement(1732553..1734040) Treponema succinifaciens DSM 2489 10431720 YP_004365790.1 CDS Tresu_1593 NC_015385.1 1734117 1735361 R COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR020823:IPR003494; KEGG: sta:STHERM_c08980 cell division protein FtsA; PFAM: Cell division protein FtsA domain; SMART: Cell division protein FtsA domain; SPTR: Cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; cell division protein FtsA complement(1734117..1735361) Treponema succinifaciens DSM 2489 10431721 YP_004365791.1 CDS Tresu_1594 NC_015385.1 1735374 1736216 R COGs: COG1589 Cell division septal protein; InterPro IPR013685; KEGG: tde:TDE1202 cell division protein FtsQ, ATPase AAA; PFAM: polypeptide-transport-associated, FtsQ-type; SPTR: Cell division protein FtsQ, ATPase AAA; PFAM: POTRA domain, FtsQ-type; polypeptide-transport-associated domain protein FtsQ-type complement(1735374..1736216) Treponema succinifaciens DSM 2489 10431722 YP_004365792.1 CDS Tresu_1595 NC_015385.1 1736209 1737417 R COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: tde:TDE1201 cell cycle protein FtsW; PFAM: Cell cycle protein; SPTR: Cell cycle protein, FtsW/RodA/SpoVE family; PFAM: Cell cycle protein; cell cycle protein complement(1736209..1737417) Treponema succinifaciens DSM 2489 10431723 YP_004365793.1 CDS Tresu_1596 NC_015385.1 1737420 1738853 R COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR005863:IPR000713:IPR013221:IPR004101; KEGG: tde:TDE1200 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- -D-alanyl- D-alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM: UDP-MurNAc-pentapeptide synthetase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase complement(1737420..1738853) Treponema succinifaciens DSM 2489 10431724 YP_004365794.1 CDS Tresu_1597 NC_015385.1 1738840 1739139 R InterPro IPR011922:IPR007060; KEGG: tde:TDE1199 cell division protein FtsL, ATPase AAA; PFAM: septum formation initiator; SPTR: Cell division protein FtsL, ATPase AAA; TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL; TIGRFAM: cell division protein FtsL; cell division protein FtsL complement(1738840..1739139) Treponema succinifaciens DSM 2489 10431725 YP_004365795.1 CDS Tresu_1598 NC_015385.1 1739139 1740161 R COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; InterPro IPR002903; KEGG: tde:TDE1198 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; SPTR: ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW; ribosomal RNA small subunit methyltransferase H complement(1739139..1740161) Treponema succinifaciens DSM 2489 10431726 YP_004365796.1 CDS Tresu_1599 NC_015385.1 1740158 1740601 R COGs: COG2001 conserved hypothetical protein; HAMAP: MraZ; InterPro IPR003444:IPR020603; KEGG: tde:TDE1197 cell division protein MraZ; PFAM: MraZ domain; SPTR: protein MraZ; TIGRFAM: MraZ; PFAM: MraZ protein; TIGRFAM: mraZ protein; protein mraZ complement(1740158..1740601) Treponema succinifaciens DSM 2489 10431727 YP_004365797.1 CDS Tresu_1600 NC_015385.1 1740787 1741524 D KEGG: tde:TDE1410 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1740787..1741524 Treponema succinifaciens DSM 2489 10431728 YP_004365798.1 CDS Tresu_1601 NC_015385.1 1741490 1741975 R COGs: COG0817 Holliday junction resolvasome endonuclease subunit; HAMAP: Crossover junction endodeoxyribonuclease RuvC; InterPro IPR002176; KEGG: tpp:TPASS_0517 Holliday junction nuclease, subunit C; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease ruvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; Crossover junction endodeoxyribonuclease ruvC complement(1741490..1741975) Treponema succinifaciens DSM 2489 10431729 YP_004365799.1 CDS Tresu_1602 NC_015385.1 1742057 1742800 R COGs: COG0217 conserved hypothetical protein; HAMAP: protein of unknown function DUF28; InterPro IPR002876; KEGG: tde:TDE1487 hypothetical protein; PFAM: protein of unknown function DUF28; SPTR: UPF0082 protein TREVI0001_2477; TIGRFAM: protein of unknown function DUF28; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family; hypothetical protein complement(1742057..1742800) Treponema succinifaciens DSM 2489 10431730 YP_004365800.1 CDS Tresu_1603 NC_015385.1 1742982 1743263 D hypothetical protein 1742982..1743263 Treponema succinifaciens DSM 2489 10431731 YP_004365801.1 CDS Tresu_1604 NC_015385.1 1743413 1744627 R COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: ssb:SSUBM407_0724 transposase; PFAM: Transposase, IS116/IS110/IS902; SPTR: ISCps8, transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein complement(1743413..1744627) Treponema succinifaciens DSM 2489 10431732 YP_004365802.1 CDS Tresu_1605 NC_015385.1 1744720 1745391 R COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: tpp:TPASS_0231 hypothetical protein; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: ribosomal large subunit pseudouridine synthase C; PFAM: RNA pseudouridylate synthase; pseudouridine synthase complement(1744720..1745391) Treponema succinifaciens DSM 2489 10431733 YP_004365803.1 CDS Tresu_1606 NC_015385.1 1745485 1746642 D KEGG: tde:TDE1451 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1745485..1746642 Treponema succinifaciens DSM 2489 10431734 YP_004365804.1 CDS Tresu_1607 NC_015385.1 1746673 1747320 R COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR010093:IPR000551:IPR002178; KEGG: tde:TDE1079 DNA-binding protein/PTS system, IIA component; PFAM: HTH transcriptional regulator, MerR; phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; SPTR: DNA-binding protein/PTS system, IIA component; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory protein (AlpA); phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; TIGRFAM: DNA binding domain, excisionase family; PTS IIA-like nitrogen-regulatory protein PtsN complement(1746673..1747320) Treponema succinifaciens DSM 2489 10431735 YP_004365805.1 CDS Tresu_1608 NC_015385.1 1747434 1748258 R KEGG: ssm:Spirs_2341 hypothetical protein; SPTR: Putative membrane protein; hypothetical protein complement(1747434..1748258) Treponema succinifaciens DSM 2489 10431736 YP_004365806.1 CDS Tresu_1609 NC_015385.1 1748319 1748759 D InterPro IPR000835; KEGG: str:Sterm_1308 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: MarR-family transcriptional regulator; PFAM: MarR family; MarR family transcriptional regulator 1748319..1748759 Treponema succinifaciens DSM 2489 10431737 YP_004365807.1 CDS Tresu_1611 NC_015385.1 1749126 1749560 R COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR001789; KEGG: tde:TDE1494 chemotaxis protein CheY; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver domain protein; PFAM: Response regulator receiver domain; response regulator receiver protein complement(1749126..1749560) Treponema succinifaciens DSM 2489 10431739 YP_004365808.1 CDS Tresu_1612 NC_015385.1 1749576 1750058 R COGs: COG1406 inhibitor of MCP methylation homolog of CheC; InterPro IPR007597; KEGG: tpp:TPASS_0365 chemotaxis protein; PFAM: CheC-like protein; SPTR: Chemotaxis protein (CheX); PFAM: CheC-like family; chemotaxis protein CheC complement(1749576..1750058) Treponema succinifaciens DSM 2489 10431740 YP_004365809.1 CDS Tresu_1613 NC_015385.1 1750092 1751501 R COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545:IPR000780:IPR022642; KEGG: tde:TDE1492 chemotaxis protein CheW; PFAM: CheW-like protein; MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; SMART: CheW-like protein; MCP methyltransferase, CheR-type; SPTR: CheW; PFAM: CheW-like domain; CheR methyltransferase, SAM binding domain; CheR-type MCP methyltransferase complement(1750092..1751501) Treponema succinifaciens DSM 2489 10431741 YP_004365810.1 CDS Tresu_1614 NC_015385.1 1751505 1753943 R COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR008207:IPR003594:IPR002545:IPR010808:IPR 004105; KEGG: tde:TDE1491 chemotaxis protein CheA; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, P2 response regulator-binding; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, subgroup, homodimeric; CheW-like protein; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain; SPTR: P2 response regulator binding domain protein; PFAM: CheW-like domain; P2 response regulator binding domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain; chemotaxis protein CheA complement(1751505..1753943) Treponema succinifaciens DSM 2489 10431742 YP_004365811.1 CDS Tresu_1615 NC_015385.1 1754115 1755365 D hypothetical protein 1754115..1755365 Treponema succinifaciens DSM 2489 10431743 YP_004365812.1 CDS Tresu_1616 NC_015385.1 1755369 1756046 R COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: aoe:Clos_0324 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; transcriptional regulator complement(1755369..1756046) Treponema succinifaciens DSM 2489 10431744 YP_004365813.1 CDS Tresu_1617 NC_015385.1 1756175 1756672 R COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: mfs:MFS40622_0301 UspA domain protein; PFAM: UspA; SPTR: UspA domain protein; PFAM: Universal stress protein family; UspA domain-containing protein complement(1756175..1756672) Treponema succinifaciens DSM 2489 10431745 YP_004365814.1 CDS Tresu_1618 NC_015385.1 1756669 1757292 R COGs: COG1394 H+-ATPase subunit D; HAMAP: ATPase, V1/A1 complex, subunit D; InterPro IPR002699; KEGG: tpp:TPASS_0527 V-type ATPase, subunit D; PFAM: ATPase, V1/A1 complex, subunit D; SPTR: V-type ATP synthase subunit D 2; TIGRFAM: ATPase, V1/A1 complex, subunit D; PFAM: ATP synthase subunit D; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D; V-type ATP synthase subunit D complement(1756669..1757292) Treponema succinifaciens DSM 2489 10431746 YP_004365815.1 CDS Tresu_1619 NC_015385.1 1757295 1758680 R COGs: COG1156 H+-ATPase subunit B; HAMAP: V-type ATP synthase regulatory subunit B/beta; InterPro IPR022879:IPR004100:IPR000194:IPR000793; KEGG: tpp:TPASS_0528 V-type ATP synthase subunit B; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SPTR: V-type ATP synthase beta chain 2; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; V-type ATP synthase subunit beta complement(1757295..1758680) Treponema succinifaciens DSM 2489 10431747 YP_004365816.1 CDS Tresu_1620 NC_015385.1 1758677 1760467 R COGs: COG1155 H+-ATPase subunit A; HAMAP: V-type ATP synthase catalytic subunit A/alpha; InterPro IPR022878:IPR004100:IPR000194:IPR000793; KEGG: tpp:TPASS_0529 V-type ATP synthase subunit A; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SPTR: V-type ATP synthase alpha chain 2; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; V-type ATP synthase subunit alpha complement(1758677..1760467) Treponema succinifaciens DSM 2489 10431748 YP_004365817.1 CDS Tresu_1621 NC_015385.1 1760464 1761102 R KEGG: tpp:TPASS_0530 possible V-type ATPase, subunit E; SPTR: V-type ATPase, subunit E, ATPase AAA; V-type ATPase, subunit E complement(1760464..1761102) Treponema succinifaciens DSM 2489 10431749 YP_004365818.1 CDS Tresu_1622 NC_015385.1 1761266 1761595 R COGs: COG1436 H+-ATPase subunit F; InterPro IPR008218; KEGG: tpp:TPASS_0531 possible V-type ATPase, subunit F; PFAM: ATPase, V1/A1 complex, subunit F; SPTR: ATP synthase (F/14-kDa) subunit; PFAM: ATP synthase (F/14-kDa) subunit; Vacuolar H+transporting two-sector ATPase F subunit complement(1761266..1761595) Treponema succinifaciens DSM 2489 10431750 YP_004365819.1 CDS Tresu_1623 NC_015385.1 1761671 1761997 R InterPro IPR002379; KEGG: csh:Closa_4195 H+transporting two-sector ATPase C subunit; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: H-ATPase homolog; PFAM: ATP synthase subunit C; H+transporting two-sector ATPase subunit C complement(1761671..1761997) Treponema succinifaciens DSM 2489 10431751 YP_004365820.1 CDS Tresu_1624 NC_015385.1 1762059 1764047 R COGs: COG1269 H+-ATPase subunit I; InterPro IPR002490; KEGG: tpp:TPASS_0533 V-type ATPase, subunit I; PFAM: ATPase, V0/A0 complex, 116kDa subunit; SPTR: Putative uncharacterized protein; PFAM: V-type ATPase 116kDa subunit family; V-type ATPase 116 kDa subunit complement(1762059..1764047) Treponema succinifaciens DSM 2489 10431752 YP_004365821.1 CDS Tresu_1625 NC_015385.1 1764040 1765071 R KEGG: tpp:TPASS_0534 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1764040..1765071) Treponema succinifaciens DSM 2489 10431753 YP_004365822.1 CDS Tresu_1626 NC_015385.1 1765081 1765389 R hypothetical protein complement(1765081..1765389) Treponema succinifaciens DSM 2489 10431754 YP_004365823.1 CDS Tresu_1627 NC_015385.1 1765422 1765880 R COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178; KEGG: ssm:Spirs_3104 ATPase AAA PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; SPTR: phosphoenolpyruvate-dependent sugar PTS family porter, EIIA 2; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS IIA-like nitrogen-regulatory protein PtsN complement(1765422..1765880) Treponema succinifaciens DSM 2489 10431755 YP_004365824.1 CDS Tresu_1628 NC_015385.1 1765922 1766263 R COGs: COG1314 Preprotein translocase subunit SecG; InterPro IPR004692; KEGG: tpp:TPASS_0536 preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit; SPTR: Putative uncharacterized protein; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit; preprotein translocase subunit SecG complement(1765922..1766263) Treponema succinifaciens DSM 2489 10431756 YP_004365825.1 CDS Tresu_1629 NC_015385.1 1766491 1767804 D COGs: COG4222 conserved hypothetical protein; KEGG: ssm:Spirs_1076 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1766491..1767804 Treponema succinifaciens DSM 2489 10431757 YP_004365826.1 CDS Tresu_1630 NC_015385.1 1767983 1768960 R InterPro IPR021139; KEGG: tde:TDE2536 hypothetical protein; PFAM: Domain of unknown function DUF88; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function DUF88; hypothetical protein complement(1767983..1768960) Treponema succinifaciens DSM 2489 10431758 YP_004365827.1 CDS Tresu_1631 NC_015385.1 1769054 1769272 R SPTR: Putative uncharacterized protein; manually curated; hypothetical protein complement(1769054..1769272) Treponema succinifaciens DSM 2489 10431759 YP_004365828.1 CDS Tresu_1632 NC_015385.1 1769259 1769438 R SPTR: Putative uncharacterized protein; hypothetical protein complement(1769259..1769438) Treponema succinifaciens DSM 2489 10431760 YP_004365829.1 CDS Tresu_1633 NC_015385.1 1769435 1769659 R KEGG: bvu:BVU_3458 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1769435..1769659) Treponema succinifaciens DSM 2489 10431761 YP_004365830.1 CDS Tresu_1634 NC_015385.1 1769672 1770442 R InterPro IPR014960:IPR014961; KEGG: pph:Ppha_0168 hypothetical protein; PFAM: Domain of unknown function DUF1828; Domain of unknown function DUF1829; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF1829; Domain of unknown function DUF1828; hypothetical protein complement(1769672..1770442) Treponema succinifaciens DSM 2489 10431762 YP_004365831.1 CDS Tresu_1635 NC_015385.1 1770439 1770900 R KEGG: hap:HAPS_1718 possible Lj965 prophage protein; SPTR: Possible Lj965 prophage protein; Lj965 prophage protein complement(1770439..1770900) Treponema succinifaciens DSM 2489 10431763 YP_004365832.1 CDS Tresu_1636 NC_015385.1 1770951 1772000 R COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR014284:IPR007627:IPR007630; KEGG: csh:Closa_2190 RNA polymerase, sigma 70 subunit, RpoD subfamily; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-32 subunit RpoH complement(1770951..1772000) Treponema succinifaciens DSM 2489 10431764 YP_004365833.1 CDS Tresu_1637 NC_015385.1 1772010 1772546 R KEGG: ckn:Calkro_0030 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1772010..1772546) Treponema succinifaciens DSM 2489 10431765 YP_004365834.1 CDS Tresu_1638 NC_015385.1 1772549 1774549 R COGs: COG0419 ATPase involved in DNA repair; KEGG: fsu:Fisuc_1671 hypothetical protein; SPTR: Putative DNA sulfur modification protein DndD; TIGRFAM: DNA sulfur modification protein DndD; hypothetical protein complement(1772549..1774549) Treponema succinifaciens DSM 2489 10431766 YP_004365835.1 CDS Tresu_1639 NC_015385.1 1774540 1774716 R hypothetical protein complement(1774540..1774716) Treponema succinifaciens DSM 2489 10431767 YP_004365836.1 CDS Tresu_1640 NC_015385.1 1774706 1776940 R COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014001:IPR001650:IPR006935; KEGG: fsu:Fisuc_1669 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, C-terminal; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: DEAD/DEAH box helicase; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: DNA phosphorothioation system restriction enzyme; type III restriction protein res subunit complement(1774706..1776940) Treponema succinifaciens DSM 2489 10431768 YP_004365837.1 CDS Tresu_1641 NC_015385.1 1776952 1778112 R COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: fsu:Fisuc_1668 cysteine desulfurase family protein; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Putative uncharacterized protein; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein; Cysteine desulfurase complement(1776952..1778112) Treponema succinifaciens DSM 2489 10431769 YP_004365838.1 CDS Tresu_1642 NC_015385.1 1778123 1781971 R KEGG: fnu:FN0446 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1778123..1781971) Treponema succinifaciens DSM 2489 10431770 YP_004365839.1 CDS Tresu_1643 NC_015385.1 1781968 1782897 R KEGG: fnu:FN0445 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1781968..1782897) Treponema succinifaciens DSM 2489 10431771 YP_004365840.1 CDS Tresu_1644 NC_015385.1 1783049 1784758 R COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500:IPR001450; KEGG: fsu:Fisuc_1665 phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulphate reductase; 4Fe-4S binding domain; SPTR: Putative uncharacterized protein; PFAM: phosphoadenosine phosphosulfate reductase family; phosphoadenosine phosphosulfate reductase complement(1783049..1784758) Treponema succinifaciens DSM 2489 10431772 YP_004365841.1 CDS Tresu_1645 NC_015385.1 1784755 1784877 R hypothetical protein complement(1784755..1784877) Treponema succinifaciens DSM 2489 10431773 YP_004365842.1 CDS Tresu_1646 NC_015385.1 1784945 1785229 R KEGG: tde:TDE1806 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1784945..1785229) Treponema succinifaciens DSM 2489 10431774 YP_004365843.1 CDS Tresu_1647 NC_015385.1 1785180 1785491 R COGs: COG2929 conserved hypothetical protein; InterPro IPR007460; KEGG: tde:TDE2051 hypothetical protein; PFAM: protein of unknown function DUF497; SPTR: Putative toxin-antitoxin system, toxin component; PFAM: protein of unknown function (DUF497); hypothetical protein complement(1785180..1785491) Treponema succinifaciens DSM 2489 10431775 YP_004365844.1 CDS Tresu_1648 NC_015385.1 1785573 1788209 D COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014001:IPR001650:IPR006935; KEGG: swo:Swol_1001 superfamily II DNA/RNA helicase; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, C-terminal; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: DNA or RNA helicases of superfamily II-like protein; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; type III restriction protein res subunit 1785573..1788209 Treponema succinifaciens DSM 2489 10431776 YP_004365845.1 CDS Tresu_1649 NC_015385.1 1788211 1788906 D InterPro IPR013217; KEGG: ere:EUBREC_3435 hypothetical protein; PFAM: methyltransferase type 12; SPTR: Putative uncharacterized protein; PFAM: methyltransferase domain; methyltransferase type 12 1788211..1788906 Treponema succinifaciens DSM 2489 10431777 YP_004365846.1 CDS Tresu_1650 NC_015385.1 1788831 1789514 R COGs: COG2818 3-methyladenine DNA glycosylase; InterPro IPR005019; KEGG: bll:BLJ_0731 3-methyladenine DNA glycosylase; PFAM: methyladenine glycosylase; PRIAM: DNA-3-methyladenine glycosylase I; SPTR: Putative uncharacterized protein; PFAM: methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I; DNA-3-methyladenine glycosylase I complement(1788831..1789514) Treponema succinifaciens DSM 2489 10431778 YP_004365847.1 CDS Tresu_1651 NC_015385.1 1789511 1789867 R KEGG: ele:Elen_1470 arsenate reductase and related; SPTR: Arsenate reductase and related proteins, glutaredoxin family; PFAM: ArsC family; arsenate reductase-like protein complement(1789511..1789867) Treponema succinifaciens DSM 2489 10431779 YP_004365848.1 CDS Tresu_1653 NC_015385.1 1790559 1790789 R KEGG: pmz:HMPREF0659_A6232 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1790559..1790789) Treponema succinifaciens DSM 2489 10431781 YP_004365849.1 CDS Tresu_1654 NC_015385.1 1790782 1791291 R KEGG: bvu:BVU_3459 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1790782..1791291) Treponema succinifaciens DSM 2489 10431782 YP_004365850.1 CDS Tresu_1655 NC_015385.1 1791288 1791512 R KEGG: bvu:BVU_3458 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1791288..1791512) Treponema succinifaciens DSM 2489 10431783 YP_004365851.1 CDS Tresu_1657 NC_015385.1 1792152 1792889 R COGs: COG0084 Mg-dependent DNase; InterPro IPR001130; KEGG: tde:TDE0966 TatD family hydrolase; PFAM: deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family; TatD-related deoxyribonuclease complement(1792152..1792889) Treponema succinifaciens DSM 2489 10431785 YP_004365852.1 CDS Tresu_1658 NC_015385.1 1793012 1793233 D KEGG: tde:TDE0967 hypothetical protein; SPTR: Conserved domain protein; hypothetical protein 1793012..1793233 Treponema succinifaciens DSM 2489 10431786 YP_004365853.1 CDS Tresu_1659 NC_015385.1 1793230 1794186 R COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022:IPR002627; KEGG: tde:TDE1447 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase 2; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase; tRNA dimethylallyltransferase complement(1793230..1794186) Treponema succinifaciens DSM 2489 10431787 YP_004365854.1 CDS Tresu_1660 NC_015385.1 1794191 1795438 R COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR003402; KEGG: ttm:Tthe_1538 protein of unknown function Met10; PFAM: protein of unknown function Met10; SPTR: Putative uncharacterized protein; PFAM: S-adenosylmethionine-dependent methyltransferase; hypothetical protein complement(1794191..1795438) Treponema succinifaciens DSM 2489 10431788 YP_004365855.1 CDS Tresu_1661 NC_015385.1 1795552 1796823 R COGs: COG0126 3-phosphoglycerate kinase; HAMAP: phosphoglycerate kinase; InterPro IPR001576; KEGG: tde:TDE1715 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: phosphoglycerate kinase; SPTR: phosphoglycerate kinase; PFAM: phosphoglycerate kinase; phosphoglycerate kinase complement(1795552..1796823) Treponema succinifaciens DSM 2489 10431789 YP_004365856.1 CDS Tresu_1662 NC_015385.1 1796918 1799053 R COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterPro IPR019734:IPR013105:IPR001440; KEGG: tde:TDE1244 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; SPTR: TPR domain protein; PFAM: Coatomer epsilon subunit; Tetratricopeptide repeat; hypothetical protein complement(1796918..1799053) Treponema succinifaciens DSM 2489 10431790 YP_004365857.1 CDS Tresu_1663 NC_015385.1 1799084 1799866 R COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR005170; KEGG: tde:TDE1243 hemolysin C; PFAM: Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core; SPTR: Hemolysin C; PFAM: CBS domain; Transporter associated domain; hypothetical protein complement(1799084..1799866) Treponema succinifaciens DSM 2489 10431791 YP_004365858.1 CDS Tresu_1664 NC_015385.1 1799875 1800369 R COGs: COG0319 metal-dependent hydrolase; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; InterPro IPR002036; KEGG: tde:TDE1242 ATPase AAA metalloprotease; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; SPTR: Putative metalloprotease TREVI0001_1034; TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family; metalloprotease ybeY complement(1799875..1800369) Treponema succinifaciens DSM 2489 10431792 YP_004365859.1 CDS Tresu_1665 NC_015385.1 1800369 1802171 R COGs: COG1480 membrane-associated HD superfamily hydrolase; InterPro IPR006675:IPR003607:IPR011621:IPR006674; KEGG: tde:TDE1241 HD domain-containing protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; Metal-dependent phosphohydrolase, 7TM intracellular domain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: HD domain protein; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG; 7TM receptor with intracellular metal dependent phosphohydrolase complement(1800369..1802171) Treponema succinifaciens DSM 2489 10431793 YP_004365860.1 CDS Tresu_1666 NC_015385.1 1802158 1803090 R COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: tde:TDE1240 PhoH family protein; PFAM: PhoH-like protein; SPTR: PhoH family protein; PFAM: PhoH-like protein; PhoH family protein complement(1802158..1803090) Treponema succinifaciens DSM 2489 10431794 YP_004365861.1 CDS Tresu_1667 NC_015385.1 1803160 1803780 R KEGG: tde:TDE1690 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1803160..1803780) Treponema succinifaciens DSM 2489 10431795 YP_004365862.1 CDS Tresu_1668 NC_015385.1 1803820 1806558 R COGs: COG0525 valyl-tRNA synthetase; HAMAP: valyl-tRNA synthetase; InterPro IPR002303:IPR002300:IPR013155:IPR019499; KEGG: tde:TDE1364 valyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; valyl-tRNA synthetase, class Ia, tRNA-binding arm; PRIAM: valine--tRNA ligase; SPTR: valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase; valyl-tRNA synthetase complement(1803820..1806558) Treponema succinifaciens DSM 2489 10431796 YP_004365863.1 CDS Tresu_1669 NC_015385.1 1807508 1808467 R COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: aar:Acear_0911 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR: lipoprotein; PFAM: Formylglycine-generating sulfatase enzyme; sulfatase-modifying factor protein complement(1807508..1808467) Treponema succinifaciens DSM 2489 10431797 YP_004365864.1 CDS Tresu_1670 NC_015385.1 1808464 1808577 R hypothetical protein complement(1808464..1808577) Treponema succinifaciens DSM 2489 10431798 YP_004365865.1 CDS Tresu_1672 NC_015385.1 1810585 1811037 D InterPro IPR000086; KEGG: pru:PRU_0662 mutator MutT protein; PFAM: NUDIX hydrolase domain; SPTR: Mutator mutT protein; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein; NUDIX hydrolase 1810585..1811037 Treponema succinifaciens DSM 2489 10431800 YP_004365866.1 CDS Tresu_1673 NC_015385.1 1811300 1811998 D COGs: COG2859 conserved hypothetical protein; InterPro IPR007497; KEGG: cff:CFF8240_1748 hypothetical protein; PFAM: protein of unknown function DUF541; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF541); hypothetical protein 1811300..1811998 Treponema succinifaciens DSM 2489 10431801 YP_004365867.1 CDS Tresu_1674 NC_015385.1 1812115 1812471 R KEGG: ele:Elen_1470 arsenate reductase and related; SPTR: Arsenate reductase and related proteins, glutaredoxin family; PFAM: ArsC family; arsenate reductase-like protein complement(1812115..1812471) Treponema succinifaciens DSM 2489 10431802 YP_004365868.1 CDS Tresu_1675 NC_015385.1 1812596 1813816 D COGs: COG1373 ATPase (AAA+ superfamily); KEGG: lba:Lebu_0098 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1812596..1813816 Treponema succinifaciens DSM 2489 10431803 YP_004365869.1 CDS Tresu_1676 NC_015385.1 1813889 1814473 D COGs: COG4475 conserved hypothetical protein; InterPro IPR006340; KEGG: tde:TDE1278 hypothetical protein; PFAM: Uncharacterised protein family UPF0340; SPTR: Putative uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0340; PFAM: protein of unknown function (DUF436); TIGRFAM: TIGR01440 family protein; hypothetical protein 1813889..1814473 Treponema succinifaciens DSM 2489 10431804 YP_004365870.1 CDS Tresu_1677 NC_015385.1 1814701 1815996 D COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR002550:IPR005170; KEGG: elm:ELI_3070 hypothetical protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SPTR: CBS domain pair; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; hypothetical protein 1814701..1815996 Treponema succinifaciens DSM 2489 10431805 YP_004365871.1 CDS Tresu_1678 NC_015385.1 1816188 1816604 D hypothetical protein 1816188..1816604 Treponema succinifaciens DSM 2489 10431806 YP_004365872.1 CDS Tresu_1680 NC_015385.1 1817543 1818049 R KEGG: nla:NLA_1360 hypothetical protein; SPTR: Identified by MetaGeneAnnotator; hypothetical protein complement(1817543..1818049) Treponema succinifaciens DSM 2489 10431808 YP_004365873.1 CDS Tresu_1681 NC_015385.1 1818046 1818288 R hypothetical protein complement(1818046..1818288) Treponema succinifaciens DSM 2489 10431809 YP_004365874.1 CDS Tresu_1682 NC_015385.1 1818282 1818671 R COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: ngk:NGK_2479 modification methylase NgoPII; PFAM: C-5 cytosine methyltransferase; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA (cytosine-5-)-methyltransferase complement(1818282..1818671) Treponema succinifaciens DSM 2489 10431810 YP_004365875.1 CDS Tresu_1683 NC_015385.1 1819158 1819868 D KEGG: dps:DP2996 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1819158..1819868 Treponema succinifaciens DSM 2489 10431811 YP_004365876.1 CDS Tresu_1685 NC_015385.1 1820337 1820990 D COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sga:GALLO_2043 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Putative uncharacterized protein; PFAM: methyltransferase domain; methyltransferase type 11 1820337..1820990 Treponema succinifaciens DSM 2489 10431813 YP_004365877.1 CDS Tresu_1686 NC_015385.1 1821134 1821919 D InterPro IPR010443; KEGG: cch:Cag_1391 ATPase AAA type II restriction enzyme; PFAM: Restriction endonuclease, type II, Tsp45I; SPTR: Putative type II restriction enzyme; PFAM: Tsp45I type II restriction enzyme; Tsp45I type II restriction protein 1821134..1821919 Treponema succinifaciens DSM 2489 10431814 YP_004365878.1 CDS Tresu_1687 NC_015385.1 1821933 1823123 D COGs: COG2189 adenine specific DNA methylase Mod; InterPro IPR002941; KEGG: cch:Cag_1392 ATPase AAA type II DNA modification enzyme (methyltransferase); PFAM: DNA methylase N-4/N-6; SPTR: Putative type II DNA modification enzyme (methyltransferase); PFAM: DNA methylase; DNA methylase N-4/N-6 domain-containing protein 1821933..1823123 Treponema succinifaciens DSM 2489 10431815 YP_004365879.1 CDS Tresu_1688 NC_015385.1 1823144 1824502 R COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: ssm:Spirs_2696 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; histidine kinase complement(1823144..1824502) Treponema succinifaciens DSM 2489 10431816 YP_004365880.1 CDS Tresu_1689 NC_015385.1 1824506 1825207 R COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: ssm:Spirs_2695 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; transcriptional regulator complement(1824506..1825207) Treponema succinifaciens DSM 2489 10431817 YP_004365881.1 CDS Tresu_1690 NC_015385.1 1825211 1826125 R KEGG: ssm:Spirs_2694 hypothetical protein; SPTR: hypothetical protein; hypothetical protein complement(1825211..1826125) Treponema succinifaciens DSM 2489 10431818 YP_004365882.1 CDS Tresu_1691 NC_015385.1 1826199 1827077 R COGs: COG0863 DNA modification methylase; InterPro IPR002941; KEGG: ran:Riean_1819 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; SPTR: DNA (Cytosine-5-)-methyltransferase; PFAM: DNA methylase; DNA methylase N-4/N-6 domain-containing protein complement(1826199..1827077) Treponema succinifaciens DSM 2489 10431819 YP_004365883.1 CDS Tresu_1692 NC_015385.1 1827079 1827609 R KEGG: cjd:JJD26997_1953 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1827079..1827609) Treponema succinifaciens DSM 2489 10431820 YP_004365884.1 CDS Tresu_1693 NC_015385.1 1827618 1828088 R KEGG: cni:Calni_1852 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1827618..1828088) Treponema succinifaciens DSM 2489 10431821 YP_004365885.1 CDS Tresu_1694 NC_015385.1 1828110 1828970 R InterPro IPR007637; KEGG: eel:EUBELI_01767 type II restriction enzyme; PFAM: Restriction endonuclease, type II, DpmII-like; PRIAM: Type II site-specific deoxyribonuclease; SPTR: DpnII restriction endonuclease; PFAM: DpnII restriction endonuclease; type II site-specific deoxyribonuclease complement(1828110..1828970) Treponema succinifaciens DSM 2489 10431822 YP_004365886.1 CDS Tresu_1695 NC_015385.1 1828981 1829520 R hypothetical protein complement(1828981..1829520) Treponema succinifaciens DSM 2489 10431823 YP_004365887.1 CDS Tresu_1696 NC_015385.1 1829533 1830429 R COGs: COG0338 Site-specific DNA methylase; InterPro IPR012327; KEGG: lba:Lebu_2246 DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: DNA adenine methylase (Dam); TIGRFAM: D12 class N6 adenine-specific DNA methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam); DNA adenine methylase complement(1829533..1830429) Treponema succinifaciens DSM 2489 10431824 YP_004365888.1 CDS Tresu_1697 NC_015385.1 1830753 1831028 R hypothetical protein complement(1830753..1831028) Treponema succinifaciens DSM 2489 10431825 YP_004365889.1 CDS Tresu_1698 NC_015385.1 1831127 1831669 R hypothetical protein complement(1831127..1831669) Treponema succinifaciens DSM 2489 10431826 YP_004365890.1 CDS Tresu_1699 NC_015385.1 1832057 1832371 R hypothetical protein complement(1832057..1832371) Treponema succinifaciens DSM 2489 10431827 YP_004365891.1 CDS Tresu_1700 NC_015385.1 1832371 1832787 R KEGG: eel:EUBELI_20537 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1832371..1832787) Treponema succinifaciens DSM 2489 10431828 YP_004365892.1 CDS Tresu_1701 NC_015385.1 1832993 1834372 R COGs: COG1641 conserved hypothetical protein; InterPro IPR002822; KEGG: afn:Acfer_1004 protein of unknown function DUF111; PFAM: Uncharacterised protein family UPF0272; SPTR: Putative uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0272; PFAM: protein of unknown function DUF111; TIGRFAM: TIGR00299 family protein; hypothetical protein complement(1832993..1834372) Treponema succinifaciens DSM 2489 10431829 YP_004365893.1 CDS Tresu_1702 NC_015385.1 1834369 1835070 R COGs: COG1691 NCAIR mutase (PurE)-related protein; InterPro IPR000031; KEGG: afn:Acfer_1003 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: phosphoribosylaminoimidazole carboxylase, core; SPTR: NCAIR mutase; PFAM: AIR carboxylase; 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase complement(1834369..1835070) Treponema succinifaciens DSM 2489 10431830 YP_004365894.1 CDS Tresu_1703 NC_015385.1 1835067 1836215 R COGs: COG1606 ATP-utilizing protein of the PP-loop superfamily; InterPro IPR005232:IPR000005:IPR011063; KEGG: afn:Acfer_1002 PP-loop domain protein; PFAM: HTH transcriptional regulator, AraC; tRNA(Ile)-lysidine/2-thiocytidine synthase; SPTR: PP-loop domain protein; TIGRFAM: Conserved hypothetical protein CHP00268; PFAM: asparagine synthase; TIGRFAM: TIGR00268 family protein; AraC family transcriptional regulator complement(1835067..1836215) Treponema succinifaciens DSM 2489 10431831 YP_004365895.1 CDS Tresu_1705 NC_015385.1 1837038 1837949 D COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: csh:Closa_1153 multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein; SPTR: Multi antimicrobial extrusion protein MatE; PFAM: MatE; multi antimicrobial extrusion protein MatE 1837038..1837949 Treponema succinifaciens DSM 2489 10431833 YP_004365896.1 CDS Tresu_1706 NC_015385.1 1838268 1840130 D COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089:IPR013163; KEGG: clj:CLJU_c14110 ATPase AAA methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache, type 2; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: Putative methyl-accepting chemotaxis protein signaling domain protein; PFAM: HAMP domain; Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer with Cache sensor 1838268..1840130 Treponema succinifaciens DSM 2489 10431834 YP_004365897.1 CDS Tresu_1708 NC_015385.1 1841553 1841759 D hypothetical protein 1841553..1841759 Treponema succinifaciens DSM 2489 10431836 YP_004365898.1 CDS Tresu_1709 NC_015385.1 1841869 1842147 D hypothetical protein 1841869..1842147 Treponema succinifaciens DSM 2489 10431837 YP_004365899.1 CDS Tresu_1710 NC_015385.1 1842536 1843309 D COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: bre:BRE_2020 PF32 plasmid partition protein; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: PF32 plasmid partition protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Cobyrinic acid ac-diamide synthase 1842536..1843309 Treponema succinifaciens DSM 2489 10431838 YP_004365900.1 CDS Tresu_1711 NC_015385.1 1843349 1844494 D KEGG: dat:HRM2_38800 ATPase AAA plasmid replication/partition related protein ParB; SPTR: Putative plasmid replication/partition related protein ParB; hypothetical protein 1843349..1844494 Treponema succinifaciens DSM 2489 10431839 YP_004365901.1 CDS Tresu_1712 NC_015385.1 1844491 1844883 D hypothetical protein 1844491..1844883 Treponema succinifaciens DSM 2489 10431840 YP_004365902.1 CDS Tresu_1713 NC_015385.1 1844888 1845232 D hypothetical protein 1844888..1845232 Treponema succinifaciens DSM 2489 10431841 YP_004365903.1 CDS Tresu_1714 NC_015385.1 1845247 1845396 D hypothetical protein 1845247..1845396 Treponema succinifaciens DSM 2489 10431842 YP_004365904.1 CDS Tresu_1715 NC_015385.1 1845393 1845584 D hypothetical protein 1845393..1845584 Treponema succinifaciens DSM 2489 10431843 YP_004365905.1 CDS Tresu_1716 NC_015385.1 1845673 1845813 D hypothetical protein 1845673..1845813 Treponema succinifaciens DSM 2489 10431844 YP_004365906.1 CDS Tresu_1717 NC_015385.1 1845817 1846599 D KEGG: sta:STHERM_c20940 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1845817..1846599 Treponema succinifaciens DSM 2489 10431845 YP_004365907.1 CDS Tresu_1718 NC_015385.1 1846613 1846837 D hypothetical protein 1846613..1846837 Treponema succinifaciens DSM 2489 10431846 YP_004365908.1 CDS Tresu_1719 NC_015385.1 1846834 1847217 D hypothetical protein 1846834..1847217 Treponema succinifaciens DSM 2489 10431847 YP_004365909.1 CDS Tresu_1720 NC_015385.1 1847214 1847531 D hypothetical protein 1847214..1847531 Treponema succinifaciens DSM 2489 10431848 YP_004365910.1 CDS Tresu_1721 NC_015385.1 1847554 1847790 D hypothetical protein 1847554..1847790 Treponema succinifaciens DSM 2489 10431849 YP_004365911.1 CDS Tresu_1722 NC_015385.1 1847824 1848060 D hypothetical protein 1847824..1848060 Treponema succinifaciens DSM 2489 10431850 YP_004365912.1 CDS Tresu_1723 NC_015385.1 1848057 1849250 D KEGG: ipo:Ilyop_1060 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1848057..1849250 Treponema succinifaciens DSM 2489 10431851 YP_004365913.1 CDS Tresu_1724 NC_015385.1 1849247 1849483 D hypothetical protein 1849247..1849483 Treponema succinifaciens DSM 2489 10431852 YP_004365914.1 CDS Tresu_1725 NC_015385.1 1849513 1849983 D COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: sul:SYO3AOP1_1690 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); single-strand binding protein 1849513..1849983 Treponema succinifaciens DSM 2489 10431853 YP_004365915.1 CDS Tresu_1727 NC_015385.1 1850602 1850835 D hypothetical protein 1850602..1850835 Treponema succinifaciens DSM 2489 10431855 YP_004365916.1 CDS Tresu_1728 NC_015385.1 1850836 1851132 D hypothetical protein 1850836..1851132 Treponema succinifaciens DSM 2489 10431856 YP_004365917.1 CDS Tresu_1729 NC_015385.1 1851146 1851511 D hypothetical protein 1851146..1851511 Treponema succinifaciens DSM 2489 10431857 YP_004365918.1 CDS Tresu_1730 NC_015385.1 1851550 1852407 D KEGG: ame:724515 mushroom body defect; SPTR: DNA-directed RNA polymerase, omega subunit family protein; hypothetical protein 1851550..1852407 Treponema succinifaciens DSM 2489 10431858 YP_004365919.1 CDS Tresu_1731 NC_015385.1 1852429 1852527 D hypothetical protein 1852429..1852527 Treponema succinifaciens DSM 2489 10431859 YP_004365920.1 CDS Tresu_1732 NC_015385.1 1852593 1853867 D KEGG: mar:MAE_49360 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1852593..1853867 Treponema succinifaciens DSM 2489 10431860 YP_004365921.1 CDS Tresu_1733 NC_015385.1 1853855 1854349 D KEGG: bfr:BF3623 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1853855..1854349 Treponema succinifaciens DSM 2489 10431861 YP_004365922.1 CDS Tresu_1734 NC_015385.1 1854346 1854438 D hypothetical protein 1854346..1854438 Treponema succinifaciens DSM 2489 10431862 YP_004365923.1 CDS Tresu_1735 NC_015385.1 1854573 1857392 R KEGG: pfd:PFDG_03181 conserved hypothetical protein; SPTR: Viral A-type inclusion protein, ATPase AAA; hypothetical protein complement(1854573..1857392) Treponema succinifaciens DSM 2489 10431863 YP_004365924.1 CDS Tresu_1736 NC_015385.1 1857415 1866120 R InterPro IPR014001:IPR011639:IPR000330:IPR001650; KEGG: chu:CHU_1466 SNF2 family helicase; PFAM: SNF2-related; Restriction modification methylase Eco57I; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; SPTR: Putative methylase; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; Eco57I restriction endonuclease; SNF2-related protein complement(1857415..1866120) Treponema succinifaciens DSM 2489 10431864 YP_004365925.1 CDS Tresu_1737 NC_015385.1 1866160 1867092 R hypothetical protein complement(1866160..1867092) Treponema succinifaciens DSM 2489 10431865 YP_004365926.1 CDS Tresu_1738 NC_015385.1 1867097 1868206 R SPTR: Putative uncharacterized protein; hypothetical protein complement(1867097..1868206) Treponema succinifaciens DSM 2489 10431866 YP_004365927.1 CDS Tresu_1739 NC_015385.1 1868317 1869063 R hypothetical protein complement(1868317..1869063) Treponema succinifaciens DSM 2489 10431867 YP_004365928.1 CDS Tresu_1740 NC_015385.1 1869288 1869749 D hypothetical protein 1869288..1869749 Treponema succinifaciens DSM 2489 10431868 YP_004365929.1 CDS Tresu_1741 NC_015385.1 1869746 1870453 D hypothetical protein 1869746..1870453 Treponema succinifaciens DSM 2489 10431869 YP_004365930.1 CDS Tresu_1742 NC_015385.1 1870519 1871259 D hypothetical protein 1870519..1871259 Treponema succinifaciens DSM 2489 10431870 YP_004365931.1 CDS Tresu_1743 NC_015385.1 1871288 1871545 D hypothetical protein 1871288..1871545 Treponema succinifaciens DSM 2489 10431871 YP_004365932.1 CDS Tresu_1744 NC_015385.1 1871751 1872641 D hypothetical protein 1871751..1872641 Treponema succinifaciens DSM 2489 10431872 YP_004365933.1 CDS Tresu_1745 NC_015385.1 1872703 1874658 R COGs: COG3846 Type IV secretory pathway TrbL protein; InterPro IPR007688; KEGG: bam:Bamb_2010 conjugal transfer protein TrbL; PFAM: Conjugal transfer, TrbL/VirB6; SPTR: TrbL/VirB6 plasmid conjugal transfer protein; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; TrbL/VirB6 plasmid conjugal transfer protein complement(1872703..1874658) Treponema succinifaciens DSM 2489 10431873 YP_004365934.1 CDS Tresu_1746 NC_015385.1 1874679 1875644 R hypothetical protein complement(1874679..1875644) Treponema succinifaciens DSM 2489 10431874 YP_004365935.1 CDS Tresu_1747 NC_015385.1 1875671 1878244 R COGs: COG3451 Type IV secretory pathway VirB4 protein; InterPro IPR003593; KEGG: paa:Paes_2349 conjugal transfer ATPase TrbE; SMART: ATPase, AAA+ type, core; SPTR: CagE TrbE VirB component of type IV transporter system; PFAM: Domain of unknown function DUF87; CagE, TrbE, VirB family, component of type IV transporter system; TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; ATPase AAA complement(1875671..1878244) Treponema succinifaciens DSM 2489 10431875 YP_004365936.1 CDS Tresu_1748 NC_015385.1 1878244 1878510 R InterPro IPR007792; PFAM: Type IV secretion system, VirB3 / TrbD / AvhB; PFAM: Type IV secretory pathway, VirB3-like protein; type IV secretory pathway VirB3 family protein complement(1878244..1878510) Treponema succinifaciens DSM 2489 10431876 YP_004365937.1 CDS Tresu_1749 NC_015385.1 1878582 1879007 R PFAM: TrbC/VIRB2 family; hypothetical protein complement(1878582..1879007) Treponema succinifaciens DSM 2489 10431877 YP_004365938.1 CDS Tresu_1750 NC_015385.1 1879169 1880146 R COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482; KEGG: paa:Paes_2346 P-type conjugative transfer ATPase TrbB; PFAM: Type II secretion system protein E; SPTR: P-type conjugative transfer ATPase TrbB; PFAM: Type II/IV secretion system protein; sigma-54 interacting domain-containing protein complement(1879169..1880146) Treponema succinifaciens DSM 2489 10431878 YP_004365939.1 CDS Tresu_1751 NC_015385.1 1880143 1880583 R hypothetical protein complement(1880143..1880583) Treponema succinifaciens DSM 2489 10431879 YP_004365940.1 CDS Tresu_1752 NC_015385.1 1880580 1881524 R hypothetical protein complement(1880580..1881524) Treponema succinifaciens DSM 2489 10431880 YP_004365941.1 CDS Tresu_1753 NC_015385.1 1881537 1883684 R COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: cpb:Cphamn1_0686 conjugal transfer coupling protein TraG; PFAM: Ti-type conjugative transfer system, TraG-like; SPTR: TRAG family protein; PFAM: TraG/TraD family; TRAG family protein complement(1881537..1883684) Treponema succinifaciens DSM 2489 10431881 YP_004365942.1 CDS Tresu_1754 NC_015385.1 1883862 1884101 D hypothetical protein 1883862..1884101 Treponema succinifaciens DSM 2489 10431882 YP_004365943.1 CDS Tresu_1755 NC_015385.1 1884258 1884575 D hypothetical protein 1884258..1884575 Treponema succinifaciens DSM 2489 10431883 YP_004365944.1 CDS Tresu_1756 NC_015385.1 1884694 1884927 D hypothetical protein 1884694..1884927 Treponema succinifaciens DSM 2489 10431884 YP_004365945.1 CDS Tresu_1757 NC_015385.1 1884924 1885568 D hypothetical protein 1884924..1885568 Treponema succinifaciens DSM 2489 10431885 YP_004365946.1 CDS Tresu_1758 NC_015385.1 1885624 1886331 D InterPro IPR006597; KEGG: bmj:BMULJ_00119 SEL1 subfamily protein; PFAM: Sel1-like; SPTR: Sel1 repeat-containing protein; PFAM: Sel1 repeat; Sel1 domain-containing protein repeat-containing protein 1885624..1886331 Treponema succinifaciens DSM 2489 10431886 YP_004365947.1 CDS Tresu_1759 NC_015385.1 1886352 1887899 D KEGG: ipo:Ilyop_1400 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1886352..1887899 Treponema succinifaciens DSM 2489 10431887 YP_004365948.1 CDS Tresu_1760 NC_015385.1 1888001 1893943 R InterPro IPR003343; KEGG: dae:Dtox_1961 Ig domain protein group 2 domain protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: Ig domain protein group 2 domain protein; PFAM: Bacterial Ig-like domain (group 2); Ig domain-containing protein group 2 domain-containing protein complement(1888001..1893943) Treponema succinifaciens DSM 2489 10431888 YP_004365949.1 CDS Tresu_1761 NC_015385.1 1894075 1895472 R COGs: COG2948 Type IV secretory pathway VirB10 protein; InterPro IPR005498; KEGG: ppr:PBPRB1607 hypothetical protein; PFAM: Type IV secretion system, VirB10 / TraB / TrbI; SPTR: Putative uncharacterized protein ATU6031; PFAM: Bacterial conjugation TrbI-like protein; conjugation TrbI family protein complement(1894075..1895472) Treponema succinifaciens DSM 2489 10431889 YP_004365950.1 CDS Tresu_1762 NC_015385.1 1895462 1896550 R COGs: COG3504 Type IV secretory pathway VirB9 protein; InterPro IPR010258; KEGG: paa:Paes_2354 P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX; SPTR: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein; TIGRFAM: P-type conjugative transfer protein TrbG; conjugal transfer protein TrbG/VirB9/cagX complement(1895462..1896550) Treponema succinifaciens DSM 2489 10431890 YP_004365951.1 CDS Tresu_1763 NC_015385.1 1896547 1897257 R COGs: COG3701 Type IV secretory pathway TrbF protein; KEGG: paa:Paes_1713 conjugal transfer protein; SPTR: Conjugal transfer protein; PFAM: glycosyl hydrolase family 71; VirB8 protein; hypothetical protein complement(1896547..1897257) Treponema succinifaciens DSM 2489 10431891 YP_004365952.1 CDS Tresu_1764 NC_015385.1 1897372 1898565 R KEGG: mpo:Mpop_3083 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Relaxase/Mobilisation nuclease domain; hypothetical protein complement(1897372..1898565) Treponema succinifaciens DSM 2489 10431892 YP_004365953.1 CDS Tresu_1765 NC_015385.1 1898581 1899063 R hypothetical protein complement(1898581..1899063) Treponema succinifaciens DSM 2489 10431893 YP_004365954.1 CDS Tresu_1766 NC_015385.1 1899079 1899396 R hypothetical protein complement(1899079..1899396) Treponema succinifaciens DSM 2489 10431894 YP_004365955.1 CDS Tresu_1767 NC_015385.1 1899411 1899695 R KEGG: rlt:Rleg2_2449 C-5 cytosine-specific DNA methylase; SPTR: Gp64; PFAM: C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase complement(1899411..1899695) Treponema succinifaciens DSM 2489 10431895 YP_004365956.1 CDS Tresu_1768 NC_015385.1 1899705 1900004 R hypothetical protein complement(1899705..1900004) Treponema succinifaciens DSM 2489 10431896 YP_004365957.1 CDS Tresu_1769 NC_015385.1 1900128 1900235 R hypothetical protein complement(1900128..1900235) Treponema succinifaciens DSM 2489 10431897 YP_004365958.1 CDS Tresu_1770 NC_015385.1 1900232 1900567 R hypothetical protein complement(1900232..1900567) Treponema succinifaciens DSM 2489 10431898 YP_004365959.1 CDS Tresu_1771 NC_015385.1 1900564 1900770 R hypothetical protein complement(1900564..1900770) Treponema succinifaciens DSM 2489 10431899 YP_004365960.1 CDS Tresu_1772 NC_015385.1 1900751 1901344 R hypothetical protein complement(1900751..1901344) Treponema succinifaciens DSM 2489 10431900 YP_004365961.1 CDS Tresu_1773 NC_015385.1 1901850 1903937 D COGs: COG0550 Topoisomerase IA; InterPro IPR006171:IPR003601:IPR003602:IPR013497; KEGG: dat:HRM2_25900 TopB; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; SPTR: DNA topoisomerase; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid; DNA topoisomerase 1901850..1903937 Treponema succinifaciens DSM 2489 10431901 YP_004365962.1 CDS Tresu_1774 NC_015385.1 1904199 1905236 D COGs: COG2826 Transposase and inactivated derivatives IS30 family; InterPro IPR001584; KEGG: cpr:CPR_0648 IS1470, transposase; PFAM: Integrase, catalytic core; SPTR: IS1470, transposase; PFAM: Integrase core domain; integrase catalytic subunit 1904199..1905236 Treponema succinifaciens DSM 2489 10431902 YP_004365963.1 CDS Tresu_1775 NC_015385.1 1905633 1907138 D COGs: COG0112 glycine/serine hydroxymethyltransferase; InterPro IPR001085; KEGG: tde:TDE2668 serine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase; PRIAM: glycine hydroxymethyltransferase; SPTR: serine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase; glycine hydroxymethyltransferase 1905633..1907138 Treponema succinifaciens DSM 2489 10431903 YP_004365964.1 CDS Tresu_1776 NC_015385.1 1907689 1909086 D hypothetical protein 1907689..1909086 Treponema succinifaciens DSM 2489 10431904 YP_004365965.1 CDS Tresu_1777 NC_015385.1 1909202 1909492 R COGs: COG3041 conserved hypothetical protein; InterPro IPR004386:IPR012753:IPR007712; KEGG: cdl:CDR20291_1759 addiction module toxin, rele/stbe family; PFAM: Plasmid stabilisation system; SPTR: Toxin-antitoxin system, toxin component, RelE family; TIGRFAM: Addiction module toxin, RelE/StbE; Conserved hypothetical protein CHP00053; PFAM: Plasmid stabilisation system protein; TIGRFAM: addiction module toxin component, YafQ family; addiction module toxin, RelE/StbE family; RelE/StbE family addiction module toxin complement(1909202..1909492) Treponema succinifaciens DSM 2489 10431905 YP_004365966.1 CDS Tresu_1778 NC_015385.1 1909486 1909752 R InterPro IPR007337; KEGG: dhd:Dhaf_3187 addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; SPTR: Toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein; TIGRFAM: RelB antitoxin; PFAM: RelB antitoxin; TIGRFAM: addiction module antitoxin, RelB/DinJ family; RelB/DinJ family addiction module antitoxin complement(1909486..1909752) Treponema succinifaciens DSM 2489 10431906 YP_004365967.1 CDS Tresu_1779 NC_015385.1 1909809 1910090 R KEGG: ccb:Clocel_0298 GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; hypothetical protein complement(1909809..1910090) Treponema succinifaciens DSM 2489 10431907 YP_004365968.1 CDS Tresu_1780 NC_015385.1 1910208 1911218 R KEGG: tde:TDE1614 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1910208..1911218) Treponema succinifaciens DSM 2489 10431908 YP_004365969.1 CDS Tresu_1781 NC_015385.1 1911215 1911511 R KEGG: tde:TDE1615 hypothetical protein; SPTR: Conserved domain protein; hypothetical protein complement(1911215..1911511) Treponema succinifaciens DSM 2489 10431909 YP_004365970.1 CDS Tresu_1782 NC_015385.1 1911606 1911962 R InterPro IPR002716; KEGG: gyc:GYMC61_1941 PilT protein domain protein; PFAM: PilT protein, N-terminal; SPTR: PilT protein domain protein; PFAM: PIN domain; PilT protein domain-containing protein complement(1911606..1911962) Treponema succinifaciens DSM 2489 10431910 YP_004365971.1 CDS Tresu_1783 NC_015385.1 1911965 1912180 R hypothetical protein complement(1911965..1912180) Treponema succinifaciens DSM 2489 10431911 YP_004365972.1 CDS Tresu_1784 NC_015385.1 1912497 1913636 R InterPro IPR002110; KEGG: tva:TVAG_314770 ankyrin repeat protein; PFAM: Ankyrin repeat; SPTR: Ankyrin repeat protein, ATPase AAA; PFAM: Ankyrin repeat; ankyrin complement(1912497..1913636) Treponema succinifaciens DSM 2489 10431912 YP_004365973.1 CDS Tresu_1785 NC_015385.1 1913724 1914551 R KEGG: mco:MCJ_006440 hypothetical protein; SPTR: Putative uncharacterized protein MCJ_006440; hypothetical protein complement(1913724..1914551) Treponema succinifaciens DSM 2489 10431913 YP_004365974.1 CDS Tresu_1786 NC_015385.1 1914517 1914786 R hypothetical protein complement(1914517..1914786) Treponema succinifaciens DSM 2489 10431914 YP_004365975.1 CDS Tresu_1787 NC_015385.1 1914922 1915344 R hypothetical protein complement(1914922..1915344) Treponema succinifaciens DSM 2489 10431915 YP_004365976.1 CDS Tresu_1788 NC_015385.1 1915362 1916510 R hypothetical protein complement(1915362..1916510) Treponema succinifaciens DSM 2489 10431916 YP_004365977.1 CDS Tresu_1789 NC_015385.1 1916598 1916888 R hypothetical protein complement(1916598..1916888) Treponema succinifaciens DSM 2489 10431917 YP_004365978.1 CDS Tresu_1790 NC_015385.1 1917074 1917391 D InterPro IPR001387; KEGG: tde:TDE2445 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; PFAM: Helix-turn-helix; hypothetical protein 1917074..1917391 Treponema succinifaciens DSM 2489 10431918 YP_004365979.1 CDS Tresu_1791 NC_015385.1 1917411 1918073 R KEGG: coc:Coch_0258 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1917411..1918073) Treponema succinifaciens DSM 2489 10431919 YP_004365980.1 CDS Tresu_1792 NC_015385.1 1918263 1920647 D COGs: COG3250 beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006103; KEGG: cpf:CPF_0826 glycosy hydrolase family protein; PFAM: glycoside hydrolase, family 2, TIM barrel; glycoside hydrolase, family 2, carbohydrate-binding; PRIAM: beta-galactosidase; SPTR: beta-galactosidase/beta-glucuronidase; PFAM: domain; glycosyl hydrolases family 2, TIM barrel domain; glycosyl hydrolases family 2, sugar binding domain; beta-galactosidase 1918263..1920647 Treponema succinifaciens DSM 2489 10431920 YP_004365981.1 CDS Tresu_1793 NC_015385.1 1920731 1921777 R COGs: COG1816 adenosine deaminase; HAMAP: adenosine deaminase; InterPro IPR006330:IPR001365; KEGG: lic:LIC10459 adenosine deaminase; PFAM: adenosine/AMP deaminase; PRIAM: adenosine deaminase; SPTR: adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; TIGRFAM: adenosine deaminase; adenosine deaminase complement(1920731..1921777) Treponema succinifaciens DSM 2489 10431921 YP_004365982.1 CDS Tresu_1794 NC_015385.1 1922149 1922478 D InterPro IPR000504; KEGG: ssm:Spirs_2330 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain; SPTR: RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNP-1 like RNA-binding protein 1922149..1922478 Treponema succinifaciens DSM 2489 10431922 YP_004365983.1 CDS Tresu_1795 NC_015385.1 1922485 1923381 D KEGG: tde:TDE2640 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: peptidase family M28; hypothetical protein 1922485..1923381 Treponema succinifaciens DSM 2489 10431923 YP_004365984.1 CDS Tresu_1796 NC_015385.1 1923378 1924277 R InterPro IPR000620; KEGG: fma:FMG_1268 ATPase AAA mambrane protein; PFAM: Drug/metabolite transporter; SPTR: Permeases of the drug/metabolite transporter (DMT) superfamily; PFAM: EamA-like transporter family; hypothetical protein complement(1923378..1924277) Treponema succinifaciens DSM 2489 10431924 YP_004365985.1 CDS Tresu_1797 NC_015385.1 1924368 1925321 D COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006225:IPR002942:IPR006145; KEGG: cni:Calni_0311 pseudouridine synthase, rlua family; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; RluA family pseudouridine synthase 1924368..1925321 Treponema succinifaciens DSM 2489 10431925 YP_004365986.1 CDS Tresu_1798 NC_015385.1 1925295 1926251 R COGs: COG1162 GTPase; HAMAP: ribosome biogenesis GTPase RsgA, ATPase AAA; InterPro IPR004881; KEGG: tde:TDE1449 GTPase YjeQ; PFAM: ribosome biogenesis GTPase RsgA, ATPase AAA; SPTR: GTPase YjeQ; TIGRFAM: ribosome biogenesis GTPase RsgA, ATPase AAA; PFAM: protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A; ribosome biogenesis GTPase RsgA complement(1925295..1926251) Treponema succinifaciens DSM 2489 10431926 YP_004365987.1 CDS Tresu_1799 NC_015385.1 1926618 1928651 R COGs: COG0480 Translation elongation factors (GTPase); InterProIPR004540:IPR005225:IPR005517:IPR000640:IPR 000795:IPR004161; KEGG: tde:TDE0285 elongation factor G; PFAM: protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, C-terminal; Translation elongation factor EFG/EF2, domain IV; SPTR: Elongation factor G 2; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain; translation elongation factor G complement(1926618..1928651) Treponema succinifaciens DSM 2489 10431928 YP_004365988.1 CDS Tresu_1800 NC_015385.1 1928836 1929861 D COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR001789; KEGG: ele:Elen_1344 diguanylate cyclase and metal dependent phosphohydrolase; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator/phosphatase; PFAM: Response regulator receiver domain; response regulator receiver protein 1928836..1929861 Treponema succinifaciens DSM 2489 10431929 YP_004365989.1 CDS Tresu_1801 NC_015385.1 1929903 1931891 D COGs: COG0171 NAD synthase; InterPro IPR003694:IPR003010:IPR022310; KEGG: cth:Cthe_0325 NAD synthetase; PFAM: NAD/GMP synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: NAD(+) synthase (glutamine-hydrolyzing); SPTR: Putative uncharacterized protein; TIGRFAM: NAD synthase; PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase; NAD+ synthetase 1929903..1931891 Treponema succinifaciens DSM 2489 10431930 YP_004365990.1 CDS Tresu_1802 NC_015385.1 1931885 1932727 D COGs: COG2961 protein involved in catabolism of external DNA; InterPro IPR007473; KEGG: pat:Patl_2039 hypothetical protein; PFAM: protein of unknown function DUF519; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF519); hypothetical protein 1931885..1932727 Treponema succinifaciens DSM 2489 10431931 YP_004365991.1 CDS Tresu_1803 NC_015385.1 1932730 1933515 R KEGG: tde:TDE2077 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1932730..1933515) Treponema succinifaciens DSM 2489 10431932 YP_004365992.1 CDS Tresu_1804 NC_015385.1 1933541 1934215 R KEGG: tde:TDE2078 TPR domain-containing protein; SPTR: TPR domain protein; hypothetical protein complement(1933541..1934215) Treponema succinifaciens DSM 2489 10431933 YP_004365993.1 CDS Tresu_1805 NC_015385.1 1934276 1935823 R COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterPro IPR003018:IPR003593:IPR002078:IPR002197; KEGG: tde:TDE2079 sigma-54 dependent transcriptional regulator, ATPase AAA; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: GAF; ATPase, AAA+ type, core; SPTR: Sigma-54 dependent transcriptional regulator, ATPase AAA; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; Fis family transcritional regulator complement(1934276..1935823) Treponema succinifaciens DSM 2489 10431934 YP_004365994.1 CDS Tresu_1806 NC_015385.1 1935836 1938181 R COGs: COG0539 ribosomal protein S1; HAMAP: Cytidylate kinase; InterProIPR003136:IPR018032:IPR022967:IPR011994:IPR 003029; KEGG: tde:TDE2080 cytidylate kinase/ribosomal protein S1; PFAM: Cytidylate kinase domain; ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1; SPTR: Cytidylate kinase/ribosomal protein S1; TIGRFAM: ribosomal S1 synthesis/modification protein; Cytidylate kinase; PFAM: Cytidylate kinase; S1 RNA binding domain; TIGRFAM: ribosomal protein S1; cytidylate kinase; cytidylate kinase complement(1935836..1938181) Treponema succinifaciens DSM 2489 10431935 YP_004365995.1 CDS Tresu_1807 NC_015385.1 1938195 1938938 R COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942:IPR006145; KEGG: tde:TDE0875 ribosomal large subunit pseudouridine synthase B; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; SMART: RNA-binding S4; SPTR: ribosomal large subunit pseudouridine synthase B; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase; RNA-binding S4 domain-containing protein complement(1938195..1938938) Treponema succinifaciens DSM 2489 10431936 YP_004365996.1 CDS Tresu_1808 NC_015385.1 1938928 1939587 R COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234; KEGG: tde:TDE0874 transcriptional regulator, ATPase AAA; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote; SPTR: Segregation and condensation protein B; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Putative transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B; chromosome segregation and condensation protein ScpB complement(1938928..1939587) Treponema succinifaciens DSM 2489 10431937 YP_004365997.1 CDS Tresu_1809 NC_015385.1 1939563 1940318 R COGs: COG1354 conserved hypothetical protein; HAMAP: Prokaryotic chromosome segregation/condensation protein ScpA; InterPro IPR003768; KEGG: tde:TDE0873 hypothetical protein; PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; SPTR: Putative uncharacterized protein; PFAM: ScpA/B protein; segregation and condensation protein A complement(1939563..1940318) Treponema succinifaciens DSM 2489 10431938 YP_004365998.1 CDS Tresu_1810 NC_015385.1 1940341 1940847 R COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: bse:Bsel_0075 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase; TIGRFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(1940341..1940847) Treponema succinifaciens DSM 2489 10431939 YP_004365999.1 CDS Tresu_1811 NC_015385.1 1940853 1942121 R COGs: COG0468 RecA/RadA recombinase; HAMAP: DNA recombination and repair protein RecA; InterPro IPR013765:IPR003593; KEGG: tde:TDE0872 recombinase A; PFAM: DNA recombination and repair protein RecA; SMART: ATPase, AAA+ type, core; SPTR: protein recA; TIGRFAM: DNA recombination and repair protein RecA; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA; protein recA complement(1940853..1942121) Treponema succinifaciens DSM 2489 10431940 YP_004366000.1 CDS Tresu_1812 NC_015385.1 1942506 1943450 D COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: tde:TDE2269 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: Putative uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme; sulfatase-modifying factor protein 1942506..1943450 Treponema succinifaciens DSM 2489 10431941 YP_004366001.1 CDS Tresu_1813 NC_015385.1 1943753 1943923 D InterPro IPR001450; KEGG: tde:TDE1736 ferredoxin, 2(4Fe-4S); PFAM: 4Fe-4S binding domain; SPTR: 4Fe-4S binding domain protein; PFAM: 4Fe-4S binding domain; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1943753..1943923 Treponema succinifaciens DSM 2489 10431942 YP_004366002.1 CDS Tresu_1814 NC_015385.1 1943986 1944861 D COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR018392:IPR016047; KEGG: tde:TDE1738 M23/M37 peptidase domain-containing protein; PFAM: peptidase M23; peptidoglycan-binding lysin domain; SPTR: M23/M37 peptidase domain protein; PFAM: peptidase family M23; LysM domain; peptidase M23 1943986..1944861 Treponema succinifaciens DSM 2489 10431943 YP_004366003.1 CDS Tresu_1815 NC_015385.1 1944922 1945926 D KEGG: sta:STHERM_c07170 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1944922..1945926 Treponema succinifaciens DSM 2489 10431944 YP_004366004.1 CDS Tresu_1816 NC_015385.1 1946207 1946506 D InterPro IPR000831; KEGG: ssm:Spirs_1491 Trp repressor; PFAM: Trp repressor; SPTR: Trp repressor; PFAM: Trp repressor protein; TIGRFAM: trp operon repressor, proteobacterial; Trp repressor 1946207..1946506 Treponema succinifaciens DSM 2489 10431945 YP_004366005.1 CDS Tresu_1817 NC_015385.1 1946521 1947234 R COGs: COG3363 IMP cyclohydrolase; InterPro IPR020600; KEGG: ere:EUBREC_1566 hypothetical protein; PFAM: Inosine monophosphate cyclohydrolase-like; SPTR: IMP cyclohydrolase-like protein; PFAM: IMP cyclohydrolase-like protein; Inosine monophosphate cyclohydrolase complement(1946521..1947234) Treponema succinifaciens DSM 2489 10431946 YP_004366006.1 CDS Tresu_1818 NC_015385.1 1947426 1948943 D InterPro IPR000297; KEGG: tde:TDE2526 hypothetical protein; PFAM: peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: Putative uncharacterized protein; PFAM: PPIC-type PPIASE domain; PpiC-type peptidyl-prolyl cis-trans isomerase 1947426..1948943 Treponema succinifaciens DSM 2489 10431947 YP_004366007.1 CDS Tresu_1819 NC_015385.1 1948945 1950573 D InterPro IPR002826; KEGG: tde:TDE2525 hypothetical protein; PFAM: protein of unknown function DUF115; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function DUF115; hypothetical protein 1948945..1950573 Treponema succinifaciens DSM 2489 10431948 YP_004366008.1 CDS Tresu_1820 NC_015385.1 1950577 1952382 R COGs: COG0481 Membrane GTPase LepA; HAMAP: GTP-binding protein LepA; InterProIPR005225:IPR006297:IPR000795:IPR004161:IPR 000640:IPR013842; KEGG: tde:TDE1893 GTP-binding protein LepA; PFAM: protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein LepA, C-terminal; SPTR: Elongation factor 4; TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain; GTP-binding protein lepA complement(1950577..1952382) Treponema succinifaciens DSM 2489 10431949 YP_004366009.1 CDS Tresu_1821 NC_015385.1 1952414 1954078 R COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478:IPR001254; KEGG: tde:TDE1343 trypsin domain/PDZ domain-containing protein; PFAM: peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: Trypsin domain/PDZ domain protein; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); peptidase S1 and S6 chymotrypsin/Hap complement(1952414..1954078) Treponema succinifaciens DSM 2489 10431950 YP_004366010.1 CDS Tresu_1822 NC_015385.1 1954062 1956179 R KEGG: tde:TDE1342 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1954062..1956179) Treponema succinifaciens DSM 2489 10431951 YP_004366011.1 CDS Tresu_1823 NC_015385.1 1956176 1957540 R COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: Lysidine-tRNA(Ile) synthetase; InterPro IPR012795:IPR012094:IPR011063; KEGG: tde:TDE1341 hypothetical protein; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; SPTR: tRNA(Ile)-lysidine synthase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; PFAM: PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, N-terminal domain; tRNA(Ile)-lysidine synthase complement(1956176..1957540) Treponema succinifaciens DSM 2489 10431952 YP_004366012.1 CDS Tresu_1824 NC_015385.1 1957643 1958197 R COGs: COG1825 ribosomal protein L25 (general stress protein Ctc); HAMAP: ribosomal protein L25, long-form; InterPro IPR001021:IPR020055; KEGG: tde:TDE1340 50S ribosomal protein L25/general stress protein Ctc; PFAM: ribosomal protein L25, short-form; SPTR: 50S ribosomal protein L25; TIGRFAM: ribosomal protein L25, long-form; PFAM: ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form; 50S ribosomal protein L25 complement(1957643..1958197) Treponema succinifaciens DSM 2489 10431953 YP_004366013.1 CDS Tresu_1825 NC_015385.1 1958330 1958608 R COGs: COG2088 Uncharacterized protein involved in the regulation of septum location; HAMAP: septation protein spoVG; InterPro IPR007170; KEGG: ssm:Spirs_1813 SpoVG family protein; PFAM: Sporulation stage V, protein G; SPTR: SpoVG family protein; PFAM: SpoVG; septation protein spoVG complement(1958330..1958608) Treponema succinifaciens DSM 2489 10431955 YP_004366014.1 CDS Tresu_1826 NC_015385.1 1958705 1959592 R COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro IPR004424:IPR006204:IPR013750; KEGG: tde:TDE1338 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(1958705..1959592) Treponema succinifaciens DSM 2489 10431956 YP_004366015.1 CDS Tresu_1828 NC_015385.1 1961048 1961341 D KEGG: brm:Bmur_1557 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1961048..1961341 Treponema succinifaciens DSM 2489 10431958 YP_004366016.1 CDS Tresu_1829 NC_015385.1 1961433 1962650 R COGs: COG1896 hydrolase of HD superfamily; KEGG: tde:TDE1299 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1961433..1962650) Treponema succinifaciens DSM 2489 10431959 YP_004366017.1 CDS Tresu_1830 NC_015385.1 1962650 1963450 R KEGG: tde:TDE1300 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1962650..1963450) Treponema succinifaciens DSM 2489 10431960 YP_004366018.1 CDS Tresu_1831 NC_015385.1 1963450 1965147 R COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604:IPR003395; KEGG: tde:TDE1301 DNA repair protein RecN; PFAM: RecF/RecN/SMC; SPTR: DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN; DNA repair protein RecN complement(1963450..1965147) Treponema succinifaciens DSM 2489 10431961 YP_004366019.1 CDS Tresu_1832 NC_015385.1 1965140 1965994 R COGs: COG0061 sugar kinase; HAMAP: Inorganic polyphosphate/ATP-NAD kinase, predicted; InterPro IPR002504; KEGG: tde:TDE1591 inorganic polyphosphate/ATP-NAD kinase, ATPase AAA; PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD kinase; inorganic polyphosphate/ATP-NAD kinase complement(1965140..1965994) Treponema succinifaciens DSM 2489 10431962 YP_004366020.1 CDS Tresu_1833 NC_015385.1 1965991 1967067 R COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: tde:TDE1590 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Aminotransferase, DegT/DnrJ/EryC1/StrS family; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; DegT/DnrJ/EryC1/StrS aminotransferase complement(1965991..1967067) Treponema succinifaciens DSM 2489 10431963 YP_004366021.1 CDS Tresu_1834 NC_015385.1 1967181 1967672 R COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: tde:TDE1589 purine-binding chemotaxis protein; PFAM: CheW-like protein; SMART: CheW-like protein; SPTR: Purine-binding chemotaxis protein; PFAM: CheW-like domain; chemotaxis protein CheW complement(1967181..1967672) Treponema succinifaciens DSM 2489 10431964 YP_004366022.1 CDS Tresu_1835 NC_015385.1 1967742 1968503 R COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: tde:TDE0972 ComF-related protein; PFAM: phosphoribosyltransferase; SPTR: ComF-related protein; PFAM: phosphoribosyl transferase domain; TIGRFAM: comF family protein; phosphoribosyltransferase complement(1967742..1968503) Treponema succinifaciens DSM 2489 10431965 YP_004366023.1 CDS Tresu_1836 NC_015385.1 1968556 1971147 R COGs: COG0249 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 1; InterProIPR005748:IPR007696:IPR000432:IPR007695:IPR 007860:IPR007861; KEGG: tde:TDE2603 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; SPTR: DNA mismatch repair protein mutS; TIGRFAM: DNA mismatch repair protein MutS, type 1; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS; DNA mismatch repair protein mutS complement(1968556..1971147) Treponema succinifaciens DSM 2489 10431966 YP_004366024.1 CDS Tresu_1837 NC_015385.1 1971215 1971748 R COGs: COG2825 Outer membrane protein; InterPro IPR005632; KEGG: tde:TDE2602 outer membrane protein, ATPase AAA; PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH); SPTR: Cationic outer membrane protein; PFAM: Outer membrane protein (OmpH-like); outer membrane chaperone Skp complement(1971215..1971748) Treponema succinifaciens DSM 2489 10431967 YP_004366025.1 CDS Tresu_1838 NC_015385.1 1971787 1974264 R COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474:IPR010827:IPR000184; KEGG: tde:TDE2601 surface antigen, ATPase AAA; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein 88; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein; outer membrane protein assembly complex, YaeT protein complement(1971787..1974264) Treponema succinifaciens DSM 2489 10431968 YP_004366026.1 CDS Tresu_1839 NC_015385.1 1974286 1978686 R COGs: COG2911 conserved hypothetical protein; InterPro IPR007452; KEGG: tde:TDE2600 hypothetical protein; PFAM: protein of unknown function DUF490; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490); hypothetical protein complement(1974286..1978686) Treponema succinifaciens DSM 2489 10431969 YP_004366027.1 CDS Tresu_1840 NC_015385.1 1978763 1979407 D COGs: COG0125 thymidylate kinase; HAMAP: thymidylate kinase; InterPro IPR018094; KEGG: ssm:Spirs_2020 thymidylate kinase; PFAM: thymidylate kinase; PRIAM: dTMP kinase; SPTR: thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; TIGRFAM: thymidylate kinase; thymidylate kinase 1978763..1979407 Treponema succinifaciens DSM 2489 10431970 YP_004366028.1 CDS Tresu_1841 NC_015385.1 1979440 1980069 D KEGG: tde:TDE2598 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1979440..1980069 Treponema succinifaciens DSM 2489 10431971 YP_004366029.1 CDS Tresu_1842 NC_015385.1 1980121 1981569 D COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616:IPR008532; KEGG: tde:TDE1579 fibronectin/fibrinogen-binding protein, internal deletion; PFAM: Fibronectin-binding A, N-terminal; Domain of unknown function DUF814; SPTR: Fibronectin/fibrinogen-binding protein, internal deletion; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA); fibronectin-binding A domain-containing protein 1980121..1981569 Treponema succinifaciens DSM 2489 10431972 YP_004366030.1 CDS Tresu_1843 NC_015385.1 1981591 1982463 D COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171; KEGG: csh:Closa_2454 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; PRIAM: methylenetetrahydrofolate reductase (NAD(P)H); SPTR: methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form; methylenetetrahydrofolate reductase 1981591..1982463 Treponema succinifaciens DSM 2489 10431973 YP_004366031.1 CDS Tresu_1844 NC_015385.1 1982479 1985052 D COGs: COG1410 methionine synthase I cobalamin-binding domain; InterPro IPR003726:IPR000489:IPR003759:IPR006158; KEGG: cbf:CLI_1701 ATPase AAA 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: Cobalamin (vitamin B12)-binding; Homocysteine S-methyltransferase; Pterin-binding; methionine synthase, cobalamin (vitamin B12)-binding module, cap; PRIAM: methionine synthase; SPTR: Putative uncharacterized protein; PFAM: Pterin binding enzyme; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain; methionine synthase 1982479..1985052 Treponema succinifaciens DSM 2489 10431974 YP_004366032.1 CDS Tresu_1845 NC_015385.1 1985049 1985993 D KEGG: ssm:Spirs_0543 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1985049..1985993 Treponema succinifaciens DSM 2489 10431975 YP_004366033.1 CDS Tresu_1846 NC_015385.1 1986005 1986796 R COGs: COG1482 phosphomannose isomerase; InterPro IPR001250; KEGG: bld:BLi02107 hypothetical protein; PFAM: mannose-6-phosphate isomerase, type I; PRIAM: mannose-6-phosphate isomerase; SPTR: phosphomannose isomerase type I; PFAM: phosphomannose isomerase type I; mannose-6-phosphate isomerase complement(1986005..1986796) Treponema succinifaciens DSM 2489 10431976 YP_004366034.1 CDS Tresu_1847 NC_015385.1 1986797 1987705 R KEGG: tde:TDE0603 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1986797..1987705) Treponema succinifaciens DSM 2489 10431977 YP_004366035.1 CDS Tresu_1848 NC_015385.1 1987891 1988592 R COGs: COG0813 Purine-nucleoside phosphorylase; HAMAP: Purine nucleoside phosphorylase; InterPro IPR004402:IPR000845; KEGG: tde:TDE0463 purine nucleoside phosphorylase; PFAM: nucleoside phosphorylase domain; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase; TIGRFAM: Purine nucleoside phosphorylase; PFAM: phosphorylase superfamily; TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD); purine nucleoside phosphorylase complement(1987891..1988592) Treponema succinifaciens DSM 2489 10431978 YP_004366036.1 CDS Tresu_1849 NC_015385.1 1988659 1989195 R COGs: COG0503 adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; HAMAP: adenine phosphoribosyl transferase; InterPro IPR005764:IPR000836; KEGG: tde:TDE1684 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyl transferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase; adenine phosphoribosyltransferase complement(1988659..1989195) Treponema succinifaciens DSM 2489 10431979 YP_004366037.1 CDS Tresu_1850 NC_015385.1 1989844 1990320 D InterPro IPR003646; KEGG: tde:TDE0409 hypothetical protein; SMART: SH3-like domain, bacterial; SPTR: Putative uncharacterized protein; SH3 domain-containing protein 1989844..1990320 Treponema succinifaciens DSM 2489 10431980 YP_004366038.1 CDS Tresu_1851 NC_015385.1 1990320 1991261 D COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: tde:TDE0410 M48 family peptidase; PFAM: peptidase M48; SPTR: peptidase, M48 family; PFAM: peptidase family M48; peptidase M48 Ste24p 1990320..1991261 Treponema succinifaciens DSM 2489 10431981 YP_004366039.1 CDS Tresu_1852 NC_015385.1 1991264 1993405 D COGs: COG2114 adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054:IPR007890; KEGG: tde:TDE0411 adenylate/guanylate cyclase catalytic domain-containing protein; PFAM: CHASE2; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: adenylate/guanylate cyclase catalytic domain protein; PFAM: adenylate and Guanylate cyclase catalytic domain; CHASE2 domain; adenylate/guanylate cyclase with Chase sensor 1991264..1993405 Treponema succinifaciens DSM 2489 10431982 YP_004366040.1 CDS Tresu_1853 NC_015385.1 1993435 1994328 R COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: elm:ELI_0131 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; PRIAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; prephenate dehydrogenase complement(1993435..1994328) Treponema succinifaciens DSM 2489 10431983 YP_004366041.1 CDS Tresu_1854 NC_015385.1 1994392 1995426 R COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006268:IPR006218; KEGG: elm:ELI_0130 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: 3-deoxy-7-phosphoheptulonate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1994392..1995426) Treponema succinifaciens DSM 2489 10431984 YP_004366042.1 CDS Tresu_1855 NC_015385.1 1995694 1995921 R InterPro IPR004370; KEGG: bpb:bpr_I2734 tautomerase family protein; PFAM: 4-oxalocrotonate tautomerase; SPTR: Tautomerase family protein; PFAM: Tautomerase enzyme; 4-oxalocrotonate tautomerase complement(1995694..1995921) Treponema succinifaciens DSM 2489 10431985 YP_004366043.1 CDS Tresu_1856 NC_015385.1 1995923 1997209 R COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterPro IPR006235:IPR000277; KEGG: eel:EUBELI_20605 O-acetylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cysteine synthase; SPTR: Putative uncharacterized protein; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(1995923..1997209) Treponema succinifaciens DSM 2489 10431986 YP_004366044.1 CDS Tresu_1857 NC_015385.1 1997244 1999187 R COGs: COG0557 Exoribonuclease R; InterPro IPR001900; KEGG: tde:TDE1371 RNB-like family protein; PFAM: ribonuclease II/R; SMART: ribonuclease II/R; SPTR: Exoribonuclease II; PFAM: RNB domain; ribonuclease II complement(1997244..1999187) Treponema succinifaciens DSM 2489 10431987 YP_004366045.1 CDS Tresu_1858 NC_015385.1 1999339 2000544 R COGs: COG3839 ABC-type sugar transport systems ATPase components; InterPro IPR003593:IPR003439:IPR013611; KEGG: sta:STHERM_c01980 sugar ABC transporter; PFAM: ABC transporter-like; Transport-associated OB, type 2; PRIAM: glycerol-3-phosphate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Multiple sugar-binding transport ATP-binding protein MsmK; PFAM: ABC transporter; TOBE domain; glycerol-3-phosphate-transporting ATPase complement(1999339..2000544) Treponema succinifaciens DSM 2489 10431988 YP_004366046.1 CDS Tresu_1860 NC_015385.1 2001374 2003467 D COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: bbu:BB0596 methyl-accepting chemotaxis protein (mcp-2); PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: methyl-accepting chemotaxis protein; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer 2001374..2003467 Treponema succinifaciens DSM 2489 10431990 YP_004366047.1 CDS Tresu_1861 NC_015385.1 2003537 2004325 D InterPro IPR005184; KEGG: mla:Mlab_0424 hypothetical protein; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR: Putative uncharacterized protein; PFAM: META domain; hypothetical protein 2003537..2004325 Treponema succinifaciens DSM 2489 10431991 YP_004366048.1 CDS Tresu_1862 NC_015385.1 2004456 2005604 D COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658; KEGG: tde:TDE0104 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; 3-dehydroquinate synthase 2004456..2005604 Treponema succinifaciens DSM 2489 10431992 YP_004366049.1 CDS Tresu_1863 NC_015385.1 2005601 2006776 D COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: tde:TDE0103 aminotransferase, class-V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Aminotransferase, class-V; PFAM: Aminotransferase class-V; Cysteine desulfurase 2005601..2006776 Treponema succinifaciens DSM 2489 10431993 YP_004366050.1 CDS Tresu_1864 NC_015385.1 2006883 2007323 D InterPro IPR006628; KEGG: tde:TDE0865 hypothetical protein; SMART: PUR-alpha/beta/gamma, DNA/RNA-binding; SPTR: Putative uncharacterized protein; PFAM: PurA ssDNA and RNA-binding protein; protein of unknown function (DUF3276); PUR-alpha/beta/gamma DNA/RNA-binding protein 2006883..2007323 Treponema succinifaciens DSM 2489 10431994 YP_004366051.1 CDS Tresu_1865 NC_015385.1 2007320 2007919 R COGs: COG0164 ribonuclease HII; InterPro IPR001352; KEGG: tde:TDE1547 ribonuclease HII; PFAM: ribonuclease HII/HIII; PRIAM: ribonuclease H; SPTR: ribonuclease HII; PFAM: ribonuclease HII; ribonuclease H complement(2007320..2007919) Treponema succinifaciens DSM 2489 10431995 YP_004366052.1 CDS Tresu_1866 NC_015385.1 2007925 2010000 R KEGG: tde:TDE1546 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2007925..2010000) Treponema succinifaciens DSM 2489 10431996 YP_004366053.1 CDS Tresu_1867 NC_015385.1 2010006 2010614 R COGs: COG2236 phosphoribosyltransferase; KEGG: ssm:Spirs_2435 phosphoribosyl transferase domain protein; SPTR: phosphoribosyl transferase domain protein; PFAM: phosphoribosyl transferase domain; phosphoribosyl transferase domain protein complement(2010006..2010614) Treponema succinifaciens DSM 2489 10431997 YP_004366054.1 CDS Tresu_1868 NC_015385.1 2010696 2011820 R InterPro IPR019734:IPR013105; KEGG: tde:TDE2594 hypothetical protein; PFAM: Tetratricopeptide TPR2; SPTR: Tetratricopeptide repeat domain protein; hypothetical protein complement(2010696..2011820) Treponema succinifaciens DSM 2489 10431998 YP_004366055.1 CDS Tresu_1869 NC_015385.1 2011821 2013038 R KEGG: tde:TDE2595 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2011821..2013038) Treponema succinifaciens DSM 2489 10431999 YP_004366056.1 CDS Tresu_1870 NC_015385.1 2013038 2013937 R KEGG: tde:TDE2596 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2013038..2013937) Treponema succinifaciens DSM 2489 10432000 YP_004366057.1 CDS Tresu_1871 NC_015385.1 2013928 2014563 R COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: tde:TDE2597 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(2013928..2014563) Treponema succinifaciens DSM 2489 10432001 YP_004366058.1 CDS Tresu_1872 NC_015385.1 2014766 2015704 D KEGG: tde:TDE2696 TPR domain-containing protein; SPTR: TPR domain protein; hypothetical protein 2014766..2015704 Treponema succinifaciens DSM 2489 10432002 YP_004366059.1 CDS Tresu_1873 NC_015385.1 2015745 2018489 D COGs: COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA; InterPro IPR022691:IPR001437; KEGG: tde:TDE2695 transcript cleavage factor/unknown domain fusion protein; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal; SPTR: Transcription elongation factor; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA; Transcription elongation factor, GreA/GreB, N-terminal protein 2015745..2018489 Treponema succinifaciens DSM 2489 10432003 YP_004366060.1 CDS Tresu_1874 NC_015385.1 2018513 2019448 D COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: tna:CTN_0053 beta-lactamase domain protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like; SPTR: Putative uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein 2018513..2019448 Treponema succinifaciens DSM 2489 10432004 YP_004366061.1 CDS Tresu_1875 NC_015385.1 2019445 2020155 D COGs: COG0274 deoxyribose-phosphate aldolase; HAMAP: deoxyribose-phosphate aldolase, type 1; InterPro IPR011343:IPR022979:IPR002915; KEGG: clj:CLJU_c18130 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: deoxyribose-phosphate aldolase; SPTR: deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase; deoxyribose-phosphate aldolase 2019445..2020155 Treponema succinifaciens DSM 2489 10432005 YP_004366062.1 CDS Tresu_1876 NC_015385.1 2020159 2020509 R InterPro IPR001845; KEGG: cbe:Cbei_3513 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family; ArsR family transcriptional regulator complement(2020159..2020509) Treponema succinifaciens DSM 2489 10432006 YP_004366063.1 CDS Tresu_1877 NC_015385.1 2020698 2023643 D COGs: COG1033 exporter of the RND superfamily protein; KEGG: tde:TDE2704 hypothetical protein; SPTR: Membrane protein, ATPase AAA; PFAM: MMPL family; hypothetical protein 2020698..2023643 Treponema succinifaciens DSM 2489 10432007 YP_004366064.1 CDS Tresu_1878 NC_015385.1 2023687 2024466 D KEGG: ssm:Spirs_3723 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2023687..2024466 Treponema succinifaciens DSM 2489 10432008 YP_004366065.1 CDS Tresu_1879 NC_015385.1 2024492 2025949 D KEGG: ssm:Spirs_3729 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2024492..2025949 Treponema succinifaciens DSM 2489 10432009 YP_004366066.1 CDS Tresu_1880 NC_015385.1 2025996 2027444 R COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR005839:IPR006638:IPR013848:IPR007197; KEGG: tde:TDE1886 MiaB-like tRNA modifying enzyme; PFAM: Radical SAM; methylthiotransferase, N-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: MiaB-like tRNA modifying enzyme; TIGRFAM: methylthiotransferase; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; radical SAM methylthiotransferase, MiaB/RimO family; MiaB family RNA modification protein complement(2025996..2027444) Treponema succinifaciens DSM 2489 10432010 YP_004366067.1 CDS Tresu_1881 NC_015385.1 2027455 2028084 R InterPro IPR019734:IPR001440; KEGG: tde:TDE1887 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR domain protein; PFAM: Tetratricopeptide repeat; hypothetical protein complement(2027455..2028084) Treponema succinifaciens DSM 2489 10432011 YP_004366068.1 CDS Tresu_1882 NC_015385.1 2028116 2028478 R COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: tde:TDE1888 hypothetical protein; PFAM: protein of unknown function DUF583; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function, DUF583; hypothetical protein complement(2028116..2028478) Treponema succinifaciens DSM 2489 10432012 YP_004366069.1 CDS Tresu_1883 NC_015385.1 2028573 2030672 R COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: tde:TDE2109 DEAD-box ATP dependent DNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: ATP-dependent RNA helicase, DEAD/DEAH box family; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; DEAD/DEAH box helicase complement(2028573..2030672) Treponema succinifaciens DSM 2489 10432013 YP_004366070.1 CDS Tresu_1884 NC_015385.1 2030988 2032400 D hypothetical protein 2030988..2032400 Treponema succinifaciens DSM 2489 10432014 YP_004366071.1 CDS Tresu_1886 NC_015385.1 2033832 2035928 D COGs: COG0480 Translation elongation factors (GTPase); InterProIPR005517:IPR000640:IPR004540:IPR005225:IPR 000795:IPR004161; KEGG: tde:TDE1049 elongation factor G; PFAM: protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Elongation factor G 1; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain; translation elongation factor G 2033832..2035928 Treponema succinifaciens DSM 2489 10432016 YP_004366072.1 CDS Tresu_1887 NC_015385.1 2036130 2036813 D KEGG: tde:TDE1050 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: KaiC; hypothetical protein 2036130..2036813 Treponema succinifaciens DSM 2489 10432017 YP_004366073.1 CDS Tresu_1888 NC_015385.1 2037176 2037337 D hypothetical protein 2037176..2037337 Treponema succinifaciens DSM 2489 10432018 YP_004366074.1 CDS Tresu_1889 NC_015385.1 2037340 2037963 R KEGG: clj:CLJU_c17680 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2037340..2037963) Treponema succinifaciens DSM 2489 10432019 YP_004366075.1 CDS Tresu_1891 NC_015385.1 2040126 2040344 R KEGG: ere:EUBREC_2969 hypothetical protein; SPTR: Cadmium-exporting ATPase; PFAM: Heavy-metal-associated domain; hypothetical protein complement(2040126..2040344) Treponema succinifaciens DSM 2489 10432021 YP_004366076.1 CDS Tresu_1892 NC_015385.1 2040510 2041244 D COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR001845:IPR018060:IPR000005; KEGG: cbi:CLJ_B1642 AraC family regulatory protein; PFAM: HTH transcriptional regulator, ArsR; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; HTH transcriptional regulator, ArsR; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, arsR family; Bacterial regulatory helix-turn-helix proteins, AraC family; ArsR family transcriptional regulator 2040510..2041244 Treponema succinifaciens DSM 2489 10432022 YP_004366077.1 CDS Tresu_1893 NC_015385.1 2041252 2041668 R KEGG: csh:Closa_0700 NUDIX hydrolase; SPTR: Putative uncharacterized protein; PFAM: Hydrolase of X-linked nucleoside diphosphate N terminal; hypothetical protein complement(2041252..2041668) Treponema succinifaciens DSM 2489 10432023 YP_004366078.1 CDS Tresu_1894 NC_015385.1 2041665 2042117 R COGs: COG0456 Acetyltransferase; InterPro IPR000182; KEGG: tde:TDE0035 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; GCN5-related N-acetyltransferase complement(2041665..2042117) Treponema succinifaciens DSM 2489 10432024 YP_004366079.1 CDS Tresu_1895 NC_015385.1 2042118 2042588 R InterPro IPR000182; KEGG: cac:CA_C3256 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family; GCN5-related N-acetyltransferase complement(2042118..2042588) Treponema succinifaciens DSM 2489 10432025 YP_004366080.1 CDS Tresu_1896 NC_015385.1 2042902 2043753 R hypothetical protein complement(2042902..2043753) Treponema succinifaciens DSM 2489 10432026 YP_004366081.1 CDS Tresu_1898 NC_015385.1 2044357 2045178 D COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: cth:Cthe_1772 hypothetical protein; PFAM: Domain of unknown function DUF218; SPTR: Putative uncharacterized protein; PFAM: DUF218 domain; hypothetical protein 2044357..2045178 Treponema succinifaciens DSM 2489 10432028 YP_004366082.1 CDS Tresu_1899 NC_015385.1 2045245 2045997 D hypothetical protein 2045245..2045997 Treponema succinifaciens DSM 2489 10432029 YP_004366083.1 CDS Tresu_1900 NC_015385.1 2046021 2046746 D KEGG: bpb:bpr_I0849 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized BCR, YitT family COG1284; hypothetical protein 2046021..2046746 Treponema succinifaciens DSM 2489 10432030 YP_004366084.1 CDS Tresu_1901 NC_015385.1 2046959 2048086 R COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: eel:EUBELI_00346 hypothetical protein; PFAM: Divalent ion symporter; SPTR: Putative uncharacterized protein; PFAM: Citrate transporter; citrate transporter complement(2046959..2048086) Treponema succinifaciens DSM 2489 10432031 YP_004366085.1 CDS Tresu_1902 NC_015385.1 2048160 2048621 R COGs: COG3708 conserved hypothetical protein; InterPro IPR010499; KEGG: cbk:CLL_A3385 transcriptional regulator, AraC family; PFAM: Bacterial transcription activator, effector binding; SMART: Bacterial transcription activator, effector binding; SPTR: Putative uncharacterized protein; PFAM: Bacterial transcription activator, effector binding domain; transcription activator effector binding protein complement(2048160..2048621) Treponema succinifaciens DSM 2489 10432032 YP_004366086.1 CDS Tresu_1903 NC_015385.1 2048730 2049632 D COGs: COG4571 Outer membrane protease; KEGG: kpe:KPK_A0239 outer membrane protease; SPTR: Protease VII; PFAM: Omptin family; hypothetical protein 2048730..2049632 Treponema succinifaciens DSM 2489 10432033 YP_004366087.1 CDS Tresu_1904 NC_015385.1 2049642 2050580 D COGs: COG2378 transcriptional regulator protein; InterPro IPR013196; KEGG: cac:CA_C3494 transcription regulator; SPTR: Transcription regulator, YOBV B.subtilis homolog; PFAM: HTH domain; transcriptional regulator 2049642..2050580 Treponema succinifaciens DSM 2489 10432034 YP_004366088.1 CDS Tresu_1905 NC_015385.1 2050648 2051457 D COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: ccv:CCV52592_0655 peptidase M48, Ste24p; PFAM: peptidase M48; SPTR: peptidase M48, Ste24p; PFAM: peptidase family M48; peptidase M48 Ste24p 2050648..2051457 Treponema succinifaciens DSM 2489 10432035 YP_004366089.1 CDS Tresu_1907 NC_015385.1 2052899 2053177 D InterPro IPR001647; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator 2052899..2053177 Treponema succinifaciens DSM 2489 10432037 YP_004366090.1 CDS Tresu_1908 NC_015385.1 2053313 2053993 R KEGG: brm:Bmur_0448 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2053313..2053993) Treponema succinifaciens DSM 2489 10432038 YP_004366091.1 CDS Tresu_1910 NC_015385.1 2055514 2056452 R COGs: COG2768 Uncharacterized Fe-S center protein; KEGG: cce:Ccel_0906 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2055514..2056452) Treponema succinifaciens DSM 2489 10432040 YP_004366092.1 CDS Tresu_1911 NC_015385.1 2056578 2057009 R COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain; KEGG: mmp:MMP0486 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Cupin domain; hypothetical protein complement(2056578..2057009) Treponema succinifaciens DSM 2489 10432041 YP_004366093.1 CDS Tresu_1912 NC_015385.1 2057426 2059045 R COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: ere:EUBREC_3578 site-specific recombinase; PFAM: Recombinase; Resolvase, N-terminal; SMART: Resolvase, N-terminal; SPTR: Putative uncharacterized protein; PFAM: Recombinase; Resolvase, N terminal domain; recombinase complement(2057426..2059045) Treponema succinifaciens DSM 2489 10432042 YP_004366094.1 CDS Tresu_1913 NC_015385.1 2059157 2059345 R KEGG: ere:EUBREC_3579 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2059157..2059345) Treponema succinifaciens DSM 2489 10432043 YP_004366095.1 CDS Tresu_1914 NC_015385.1 2059360 2060199 R COGs: COG1484 DNA replication protein; KEGG: ere:EUBREC_3580 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: IstB-like ATP binding protein; hypothetical protein complement(2059360..2060199) Treponema succinifaciens DSM 2489 10432044 YP_004366096.1 CDS Tresu_1915 NC_015385.1 2060196 2060990 R InterPro IPR010724; KEGG: ere:EUBREC_3581 hypothetical protein; PFAM: Replication initiator A, N-terminal; SPTR: Putative uncharacterized protein; PFAM: Replication initiator protein A (RepA) N-terminus; replication initiator A domain-containing protein complement(2060196..2060990) Treponema succinifaciens DSM 2489 10432045 YP_004366097.1 CDS Tresu_1916 NC_015385.1 2061063 2061449 R KEGG: ere:EUBREC_3582 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2061063..2061449) Treponema succinifaciens DSM 2489 10432046 YP_004366098.1 CDS Tresu_1917 NC_015385.1 2061439 2063106 R InterPro IPR005094; KEGG: ere:EUBREC_3583 hypothetical protein; PFAM: Endonuclease relaxase, MobA/VirD2; SPTR: Putative uncharacterized protein; PFAM: Relaxase/Mobilisation nuclease domain; Relaxase/mobilization nuclease family protein complement(2061439..2063106) Treponema succinifaciens DSM 2489 10432047 YP_004366099.1 CDS Tresu_1919 NC_015385.1 2064123 2064314 R SPTR: Putative uncharacterized protein; hypothetical protein complement(2064123..2064314) Treponema succinifaciens DSM 2489 10432049 YP_004366100.1 CDS Tresu_1920 NC_015385.1 2064737 2065030 D SPTR: Putative uncharacterized protein; hypothetical protein 2064737..2065030 Treponema succinifaciens DSM 2489 10432050 YP_004366101.1 CDS Tresu_1921 NC_015385.1 2065406 2066626 D InterPro IPR004751:IPR011701; KEGG: ckr:CKR_2228 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: H+ Antiporter protein; TIGRFAM: Drug antiporter protein; PFAM: Major Facilitator Superfamily; TIGRFAM: H+ Antiporter protein; H+ Antiporter protein 2065406..2066626 Treponema succinifaciens DSM 2489 10432051 YP_004366102.1 CDS Tresu_1922 NC_015385.1 2066707 2067507 R InterPro IPR001387; KEGG: elm:ELI_1005 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix; PFAM: Helix-turn-helix; hypothetical protein complement(2066707..2067507) Treponema succinifaciens DSM 2489 10432052 YP_004366103.1 CDS Tresu_1923 NC_015385.1 2067586 2067849 R SPTR: Putative uncharacterized protein; hypothetical protein complement(2067586..2067849) Treponema succinifaciens DSM 2489 10432053 YP_004366104.1 CDS Tresu_1924 NC_015385.1 2068078 2068491 D KEGG: elm:ELI_1003 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2068078..2068491 Treponema succinifaciens DSM 2489 10432054 YP_004366105.1 CDS Tresu_1925 NC_015385.1 2068531 2069082 R SPTR: Putative uncharacterized protein; hypothetical protein complement(2068531..2069082) Treponema succinifaciens DSM 2489 10432055 YP_004366106.1 CDS Tresu_1926 NC_015385.1 2069172 2070116 D InterPro IPR001668; KEGG: elm:ELI_1000 plasmid recombination protein; PFAM: Plasmid recombination enzyme; SPTR: Plasmid recombination enzyme; PFAM: Plasmid recombination enzyme; plasmid recombination protein 2069172..2070116 Treponema succinifaciens DSM 2489 10432056 YP_004366107.1 CDS Tresu_1927 NC_015385.1 2070100 2070312 D KEGG: ckl:CKL_2861 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2070100..2070312 Treponema succinifaciens DSM 2489 10432057 YP_004366108.1 CDS Tresu_1928 NC_015385.1 2070407 2071918 D COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: ere:EUBREC_2739 site-specific recombinases, DNA invertase Pin-like protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal; SPTR: Site-specific recombinases, DNA invertase Pin homologs; PFAM: Recombinase; Resolvase, N terminal domain; resolvase 2070407..2071918 Treponema succinifaciens DSM 2489 10432058 YP_004366109.1 CDS Tresu_1929 NC_015385.1 2072070 2072267 R SPTR: Putative uncharacterized protein; hypothetical protein complement(2072070..2072267) Treponema succinifaciens DSM 2489 10432059 YP_004366110.1 CDS Tresu_1930 NC_015385.1 2072317 2072883 D SPTR: Putative uncharacterized protein; hypothetical protein 2072317..2072883 Treponema succinifaciens DSM 2489 10432060 YP_004366111.1 CDS Tresu_1932 NC_015385.1 2073403 2074596 R COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004191:IPR002104; KEGG: cdf:CD1091 integrase; PFAM: Integrase, catalytic core, phage; Integrase, Tn916-type, N-terminal DNA binding; SPTR: Transposase; PFAM: DNA binding domain of tn916 integrase; Phage integrase family; integrase family protein complement(2073403..2074596) Treponema succinifaciens DSM 2489 10432062 YP_004366112.1 CDS Tresu_1933 NC_015385.1 2074677 2074880 R InterPro IPR015122; KEGG: cdf:CD0356 excisionase; PFAM: excisionase; SPTR: Xis; PFAM: excisionase; TIGRFAM: DNA binding domain, excisionase family; excisionase complement(2074677..2074880) Treponema succinifaciens DSM 2489 10432063 YP_004366113.1 CDS Tresu_1934 NC_015385.1 2075332 2075592 R KEGG: cdf:CD1092A conjugative transposon protein; SPTR: Putative uncharacterized protein; conjugative transposon protein complement(2075332..2075592) Treponema succinifaciens DSM 2489 10432064 YP_004366114.1 CDS Tresu_1935 NC_015385.1 2075573 2076127 R InterPro IPR014284:IPR013249; KEGG: cdf:CD1094 conjugative transposon protein; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: Sigma-70, region 4 subfamily; TIGRFAM: RNA polymerase sigma-70; manually curated; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; sigma-70 family RNA polymerase sigma factor complement(2075573..2076127) Treponema succinifaciens DSM 2489 10432065 YP_004366115.1 CDS Tresu_1936 NC_015385.1 2076541 2077530 R COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR004383:IPR007197; KEGG: cdl:CDR20291_1774 hypothetical protein; PFAM: Radical SAM; SPTR: radical SAM protein; TIGRFAM: ribosomal RNA large subunit methyltransferase RlmN; PFAM: Radical SAM superfamily; TIGRFAM: 23S rRNA m2A2503 methyltransferase; radical SAM protein complement(2076541..2077530) Treponema succinifaciens DSM 2489 10432066 YP_004366116.1 CDS Tresu_1937 NC_015385.1 2077591 2078016 R InterPro IPR013216; KEGG: hau:Haur_0170 type 11 methyltransferase; PFAM: methyltransferase type 11; SPTR: Putative uncharacterized protein; PFAM: methyltransferase domain; methyltransferase type 11 complement(2077591..2078016) Treponema succinifaciens DSM 2489 10432067 YP_004366117.1 CDS Tresu_1938 NC_015385.1 2078248 2078703 R InterPro IPR001387; KEGG: ljf:FI9785_1788 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix type 3; PFAM: Helix-turn-helix; hypothetical protein complement(2078248..2078703) Treponema succinifaciens DSM 2489 10432068 YP_004366118.1 CDS Tresu_1939 NC_015385.1 2078785 2080704 R COGs: COG0480 Translation elongation factors (GTPase); InterProIPR005517:IPR005225:IPR000795:IPR004161:IPR 000640; KEGG: bll:BLJ_1245 translation elongation factor G; PFAM: protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, domain IV; SPTR: Translation elongation factor G; TIGRFAM: Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: small GTP-binding protein domain; small GTP-binding protein complement(2078785..2080704) Treponema succinifaciens DSM 2489 10432069 YP_004366119.1 CDS Tresu_1940 NC_015385.1 2081067 2081588 R KEGG: bbe:BBR47_39740 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Chloramphenicol phosphotransferase-like protein; hypothetical protein complement(2081067..2081588) Treponema succinifaciens DSM 2489 10432070 YP_004366120.1 CDS Tresu_1941 NC_015385.1 2081851 2082918 R COGs: COG1073 Hydrolase of the alpha/beta superfamily; KEGG: sga:GALLO_0889 hypothetical protein; SPTR: Hydrolases of the alpha/beta superfamily; PFAM: BAAT / acyl-CoA thioester hydrolase C terminal; hypothetical protein complement(2081851..2082918) Treponema succinifaciens DSM 2489 10432071 YP_004366121.1 CDS Tresu_1942 NC_015385.1 2083074 2083955 D COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: bmq:BMQ_3743 transcriptional regulator, LysR family; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; SPTR: Putative uncharacterized protein; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; LysR family transcriptional regulator 2083074..2083955 Treponema succinifaciens DSM 2489 10432072 YP_004366122.1 CDS Tresu_1943 NC_015385.1 2084191 2084547 R COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; InterPro IPR003779; KEGG: sga:GALLO_0912 gamma-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; SPTR: Putative gamma-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase complement(2084191..2084547) Treponema succinifaciens DSM 2489 10432073 YP_004366123.1 CDS Tresu_1944 NC_015385.1 2084632 2085192 R KEGG: hhe:HH1031 flavodoxin; SPTR: Flavodoxin; flavodoxin complement(2084632..2085192) Treponema succinifaciens DSM 2489 10432074 YP_004366124.1 CDS Tresu_1945 NC_015385.1 2085299 2085733 R COGs: COG4925 conserved hypothetical protein; KEGG: dsa:Desal_3565 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF369); hypothetical protein complement(2085299..2085733) Treponema succinifaciens DSM 2489 10432075 YP_004366125.1 CDS Tresu_1946 NC_015385.1 2085768 2087537 R COGs: COG1154 deoxyxylulose-5-phosphate synthase; InterPro IPR005475:IPR005476; KEGG: ccb:Clocel_3398 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SMART: Transketolase-like, pyrimidine-binding domain; SPTR: Putative uncharacterized protein; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase complement(2085768..2087537) Treponema succinifaciens DSM 2489 10432076 YP_004366126.1 CDS Tresu_1947 NC_015385.1 2087755 2088474 D InterPro IPR001647; KEGG: shi:Shel_18430 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator 2087755..2088474 Treponema succinifaciens DSM 2489 10432077 YP_004366127.1 CDS Tresu_1948 NC_015385.1 2088498 2089268 D KEGG: bpb:bpr_I1000 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2088498..2089268 Treponema succinifaciens DSM 2489 10432078 YP_004366128.1 CDS Tresu_1949 NC_015385.1 2089394 2090263 R COGs: COG0348 polyferredoxin; InterPro IPR001450; KEGG: cdl:CDR20291_1357 ATPase AAA iron-sulfur cluster-binding protein; PFAM: 4Fe-4S binding domain; SPTR: Putative uncharacterized protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(2089394..2090263) Treponema succinifaciens DSM 2489 10432079 YP_004366129.1 CDS Tresu_1950 NC_015385.1 2090279 2090431 R SPTR: Putative uncharacterized protein; hypothetical protein complement(2090279..2090431) Treponema succinifaciens DSM 2489 10432080 YP_004366130.1 CDS Tresu_1951 NC_015385.1 2090428 2090943 R InterPro IPR000866; KEGG: cdl:CDR20291_1801 hypothetical protein; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; SPTR: Putative uncharacterized protein; PFAM: AhpC/TSA family; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(2090428..2090943) Treponema succinifaciens DSM 2489 10432081 YP_004366131.1 CDS Tresu_1953 NC_015385.1 2091981 2092433 D InterPro IPR000086; KEGG: pru:PRU_0662 mutator MutT protein; PFAM: NUDIX hydrolase domain; SPTR: Mutator mutT protein; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein; NUDIX hydrolase 2091981..2092433 Treponema succinifaciens DSM 2489 10432083 YP_004366132.1 CDS Tresu_1954 NC_015385.1 2092591 2093376 R COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: elm:ELI_2116 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: Putative uncharacterized protein; PFAM: methyltransferase domain; methyltransferase type 11 complement(2092591..2093376) Treponema succinifaciens DSM 2489 10432084 YP_004366133.1 CDS Tresu_1956 NC_015385.1 2093987 2095051 R COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: bld:BLi04065 YdfH; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Putative transmembrane protein; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; histidine kinase complement(2093987..2095051) Treponema succinifaciens DSM 2489 10432086 YP_004366134.1 CDS Tresu_1957 NC_015385.1 2095096 2095713 D KEGG: ssm:Spirs_0021 hypothetical protein; SPTR: Signal transduction histidine kinase; hypothetical protein 2095096..2095713 Treponema succinifaciens DSM 2489 10432087 YP_004366135.1 CDS Tresu_1958 NC_015385.1 2096127 2096735 R COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR001789; KEGG: fri:FraEuI1c_2962 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator complement(2096127..2096735) Treponema succinifaciens DSM 2489 10432088 YP_004366136.1 CDS Tresu_1959 NC_015385.1 2096897 2097238 D hypothetical protein 2096897..2097238 Treponema succinifaciens DSM 2489 10432089 YP_004366137.1 CDS Tresu_1960 NC_015385.1 2097254 2098351 D hypothetical protein 2097254..2098351 Treponema succinifaciens DSM 2489 10432090 YP_004366138.1 CDS Tresu_1961 NC_015385.1 2098508 2098840 D hypothetical protein 2098508..2098840 Treponema succinifaciens DSM 2489 10432091 YP_004366139.1 CDS Tresu_1962 NC_015385.1 2098967 2099179 R InterPro IPR012753; KEGG: fsu:Fisuc_0169 addiction module toxin, RelE/StbE family; SPTR: Toxin-antitoxin system, toxin component, RelE family; TIGRFAM: Addiction module toxin, RelE/StbE; TIGRFAM: addiction module toxin, RelE/StbE family; RelE/StbE family addiction module toxin complement(2098967..2099179) Treponema succinifaciens DSM 2489 10432092 YP_004366140.1 CDS Tresu_1963 NC_015385.1 2099291 2099866 R InterPro IPR014044; PFAM: CAP domain; PFAM: Cysteine-rich secretory protein family; hypothetical protein complement(2099291..2099866) Treponema succinifaciens DSM 2489 10432093 YP_004366141.1 CDS Tresu_1965 NC_015385.1 2101922 2102566 D COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: vex:VEA_000091 transcriptional regulatory protein UhpA; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SPTR: DNA-binding response regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator 2101922..2102566 Treponema succinifaciens DSM 2489 10432095 YP_004366142.1 CDS Tresu_1966 NC_015385.1 2102563 2103153 D KEGG: ssm:Spirs_0521 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2102563..2103153 Treponema succinifaciens DSM 2489 10432096 YP_004366143.1 CDS Tresu_1967 NC_015385.1 2103150 2103971 D COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594; KEGG: dhd:Dhaf_1231 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SPTR: histidine kinase; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; histidine kinase 2103150..2103971 Treponema succinifaciens DSM 2489 10432097 YP_004366144.1 CDS Tresu_1968 NC_015385.1 2103984 2104508 D hypothetical protein 2103984..2104508 Treponema succinifaciens DSM 2489 10432098 YP_004366145.1 CDS Tresu_1969 NC_015385.1 2104596 2105996 D COGs: COG1672 ATPase (AAA+ superfamily); InterPro IPR011579:IPR004256; KEGG: mpe:MYPE5260 hypothetical protein; SPTR: Archaeal ATPase family protein; PFAM: Archaeal ATPase; Archaea bacterial proteins of unknown function; hypothetical protein 2104596..2105996 Treponema succinifaciens DSM 2489 10432099 YP_004366146.1 CDS Tresu_1971 NC_015385.1 2107336 2107491 D hypothetical protein 2107336..2107491 Treponema succinifaciens DSM 2489 10432101 YP_004366147.1 CDS Tresu_1972 NC_015385.1 2107564 2107761 D hypothetical protein 2107564..2107761 Treponema succinifaciens DSM 2489 10432102 YP_004366148.1 CDS Tresu_1973 NC_015385.1 2107771 2109090 D KEGG: bpb:bpr_I0318 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2107771..2109090 Treponema succinifaciens DSM 2489 10432103 YP_004366149.1 CDS Tresu_1974 NC_015385.1 2109092 2110564 D COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: ddd:Dda3937_03601 radical SAM domain heme biosynthesis protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain heme biosynthesis protein; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain; Radical SAM domain protein 2109092..2110564 Treponema succinifaciens DSM 2489 10432104 YP_004366150.1 CDS Tresu_1975 NC_015385.1 2110680 2110883 D hypothetical protein 2110680..2110883 Treponema succinifaciens DSM 2489 10432105 YP_004366151.1 CDS Tresu_1977 NC_015385.1 2111614 2111976 D hypothetical protein 2111614..2111976 Treponema succinifaciens DSM 2489 10432107 YP_004366152.1 CDS Tresu_1978 NC_015385.1 2111990 2112655 D hypothetical protein 2111990..2112655 Treponema succinifaciens DSM 2489 10432108 YP_004366153.1 CDS Tresu_1980 NC_015385.1 2113311 2113898 R COGs: COG2184 protein involved in cell division; InterPro IPR013436:IPR003812; KEGG: rpe:RPE_3410 mobile mystery protein B; PFAM: Filamentation induced by cAMP/death on curing-related; SPTR: Mobile mystery protein B; TIGRFAM: Mobile mystery protein B; PFAM: Fic/DOC family; TIGRFAM: mobile mystery protein B; mobile mystery protein B complement(2113311..2113898) Treponema succinifaciens DSM 2489 10432110 YP_004366154.1 CDS Tresu_1981 NC_015385.1 2113905 2114345 R InterPro IPR001387:IPR013435; KEGG: gsu:GSU1390 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; TIGRFAM: Mobile mystery protein A; PFAM: Helix-turn-helix; TIGRFAM: mobile mystery protein A; mobile mystery protein A complement(2113905..2114345) Treponema succinifaciens DSM 2489 10432111 YP_004366155.1 CDS Tresu_1983 NC_015385.1 2114905 2115738 R KEGG: pgn:PGN_1209 probable flavodoxin; SPTR: Putative flavodoxin; hypothetical protein complement(2114905..2115738) Treponema succinifaciens DSM 2489 10432113 YP_004366156.1 CDS Tresu_1984 NC_015385.1 2115760 2116302 R COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain; InterPro IPR013096; KEGG: elm:ELI_2297 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: Putative uncharacterized protein; PFAM: Cupin domain; Cupin 2 conserved barrel domain-containing protein complement(2115760..2116302) Treponema succinifaciens DSM 2489 10432114 YP_004366157.1 CDS Tresu_1985 NC_015385.1 2116302 2117015 R InterPro IPR003779; KEGG: pca:Pcar_1079 carboxymuconolactone decarboxylase family protein; PFAM: Carboxymuconolactone decarboxylase; SPTR: Carboxymuconolactone decarboxylase family protein; PFAM: Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase complement(2116302..2117015) Treponema succinifaciens DSM 2489 10432115 YP_004366158.1 CDS Tresu_1986 NC_015385.1 2117017 2118093 R KEGG: dvm:DvMF_2944 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2117017..2118093) Treponema succinifaciens DSM 2489 10432116 YP_004366159.1 CDS Tresu_1987 NC_015385.1 2118389 2119702 D COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: nmn:NMCC_1162 DNA (cytosine-5-)-methyltransferase; PFAM: C-5 cytosine methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: C-5 cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA-cytosine methyltransferase 2118389..2119702 Treponema succinifaciens DSM 2489 10432117 YP_004366160.1 CDS Tresu_1988 NC_015385.1 2119683 2120408 D InterPro IPR019064; KEGG: nme:NMB1032 type II restriction enzyme NlaIV; PFAM: Restriction endonuclease, type II, NgoBV; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Type II restriction enzyme NlaIV; PFAM: NgoBV restriction endonuclease; type II site-specific deoxyribonuclease 2119683..2120408 Treponema succinifaciens DSM 2489 10432118 YP_004366161.1 CDS Tresu_1989 NC_015385.1 2120491 2121342 D COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: afn:Acfer_0523 transcriptional regulator, LysR family; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; SPTR: Transcriptional regulator, LysR family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; LysR family transcriptional regulator 2120491..2121342 Treponema succinifaciens DSM 2489 10432119 YP_004366162.1 CDS Tresu_1991 NC_015385.1 2122140 2123270 R COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein complement(2122140..2123270) Treponema succinifaciens DSM 2489 10432121 YP_004366163.1 CDS Tresu_1992 NC_015385.1 2123492 2123746 R hypothetical protein complement(2123492..2123746) Treponema succinifaciens DSM 2489 10432122 YP_004366164.1 CDS Tresu_1993 NC_015385.1 2123826 2125955 R InterPro IPR005532; KEGG: cce:Ccel_1865 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR: XylR (Modular protein); sulfatase-modifying factor protein complement(2123826..2125955) Treponema succinifaciens DSM 2489 10432123 YP_004366165.1 CDS Tresu_1994 NC_015385.1 2125980 2126174 R hypothetical protein complement(2125980..2126174) Treponema succinifaciens DSM 2489 10432124 YP_004366166.1 CDS Tresu_1995 NC_015385.1 2126602 2127732 D COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein 2126602..2127732 Treponema succinifaciens DSM 2489 10432125 YP_004366167.1 CDS Tresu_1996 NC_015385.1 2128341 2128640 D hypothetical protein 2128341..2128640 Treponema succinifaciens DSM 2489 10432126 YP_004366168.1 CDS Tresu_1997 NC_015385.1 2128895 2129386 D SPTR: Putative uncharacterized protein; hypothetical protein 2128895..2129386 Treponema succinifaciens DSM 2489 10432127 YP_004366169.1 CDS Tresu_1998 NC_015385.1 2129562 2130152 D hypothetical protein 2129562..2130152 Treponema succinifaciens DSM 2489 10432128 YP_004366170.1 CDS Tresu_1999 NC_015385.1 2130166 2130984 D COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: chu:CHU_1265 two-component sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; SPTR: Two-component sensor histidine kinase; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; signal transduction histidine kinase 2130166..2130984 Treponema succinifaciens DSM 2489 10432129 YP_004366171.1 CDS Tresu_2001 NC_015385.1 2131687 2133039 R COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bbp:BBPR_0085 hypothetical protein; SPTR: Putative ATPase; hypothetical protein complement(2131687..2133039) Treponema succinifaciens DSM 2489 10432131 YP_004366172.1 CDS Tresu_2002 NC_015385.1 2133359 2134585 D COGs: COG1373 ATPase (AAA+ superfamily); KEGG: cst:CLOST_0209 hypothetical protein; SPTR: AAA+ superfamily ATPase; hypothetical protein 2133359..2134585 Treponema succinifaciens DSM 2489 10432132 YP_004366173.1 CDS Tresu_2003 NC_015385.1 2134750 2135301 D COGs: COG3040 Bacterial lipocalin; InterPro IPR013208; KEGG: fba:FIC_01802 outer membrane lipoprotein (lipocalin); PFAM: lipocalin-like; SPTR: lipocalin; PFAM: lipocalin-like domain; lipocalin family protein 2134750..2135301 Treponema succinifaciens DSM 2489 10432133 YP_004366174.1 CDS Tresu_2004 NC_015385.1 2135456 2138491 D COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: eel:EUBELI_01746 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF2726); hypothetical protein 2135456..2138491 Treponema succinifaciens DSM 2489 10432134 YP_004366175.1 CDS Tresu_2005 NC_015385.1 2138543 2138773 D hypothetical protein 2138543..2138773 Treponema succinifaciens DSM 2489 10432135 YP_004366176.1 CDS Tresu_2006 NC_015385.1 2138877 2139047 R SPTR: Superfamily I DNA and RNA helicases; PFAM: Topoisomerase DNA binding C4 zinc finger; hypothetical protein complement(2138877..2139047) Treponema succinifaciens DSM 2489 10432136 YP_004366177.1 CDS Tresu_2007 NC_015385.1 2139221 2140885 D COGs: COG0696 phosphoglyceromutase; InterPro IPR005995:IPR011258:IPR006124; KEGG: sta:STHERM_c04770 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; PRIAM: phosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; phosphoglycerate mutase 2139221..2140885 Treponema succinifaciens DSM 2489 10432137 YP_004366178.1 CDS Tresu_2008 NC_015385.1 2140958 2142268 R COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: dac:Daci_3787 6-aminohexanoate-dimer hydrolase; PFAM: beta-lactamase-related; PRIAM: 6-aminohexanoate-dimer hydrolase; SPTR: 6-aminohexanoate-dimer hydrolase; PFAM: beta-lactamase; 6-aminohexanoate-dimer hydrolase complement(2140958..2142268) Treponema succinifaciens DSM 2489 10432138 YP_004366179.1 CDS Tresu_2009 NC_015385.1 2142521 2143264 R KEGG: tde:TDE0944 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2142521..2143264) Treponema succinifaciens DSM 2489 10432139 YP_004366180.1 CDS Tresu_2010 NC_015385.1 2143544 2146630 R COGs: COG3250 beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006103:IPR004199; KEGG: rca:Rcas_2493 beta-galactosidase; PFAM: glycoside hydrolase, family 2, TIM barrel; glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 42, domain 5; SPTR: glycoside hydrolase family 2 TIM barrel; PFAM: domain; glycosyl hydrolases family 2, TIM barrel domain; beta galactosidase small chain; glycosyl hydrolases family 2, sugar binding domain; glycoside hydrolase family protein complement(2143544..2146630) Treponema succinifaciens DSM 2489 10432140 YP_004366181.1 CDS Tresu_2011 NC_015385.1 2146837 2148117 D COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: cpy:Cphy_3590 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding protein; extracellular solute-binding protein 2146837..2148117 Treponema succinifaciens DSM 2489 10432141 YP_004366182.1 CDS Tresu_2012 NC_015385.1 2148197 2149081 D COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: gyc:GYMC61_0532 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Putative uncharacterized protein; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease 2148197..2149081 Treponema succinifaciens DSM 2489 10432142 YP_004366183.1 CDS Tresu_2013 NC_015385.1 2149078 2149893 D COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: cpy:Cphy_3588 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease 2149078..2149893 Treponema succinifaciens DSM 2489 10432143 YP_004366184.1 CDS Tresu_2014 NC_015385.1 2149971 2150231 R KEGG: ere:EUBREC_2791 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: uncharacterized protein TIGR03905; hypothetical protein complement(2149971..2150231) Treponema succinifaciens DSM 2489 10432144 YP_004366185.1 CDS Tresu_2015 NC_015385.1 2150239 2151042 R COGs: COG1101 ABC transporter ATPase component; InterPro IPR003593:IPR003439; KEGG: bhy:BHWA1_00398 ABC transporter related; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter; phosphonate-transporting ATPase complement(2150239..2151042) Treponema succinifaciens DSM 2489 10432145 YP_004366186.1 CDS Tresu_2016 NC_015385.1 2151035 2151997 R COGs: COG4120 ABC transporter permease component; InterPro IPR001851; KEGG: bhy:BHWA1_00397 hypothetical protein; PFAM: ABC transporter permease; SPTR: Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component; ABC transporter permease complement(2151035..2151997) Treponema succinifaciens DSM 2489 10432146 YP_004366187.1 CDS Tresu_2017 NC_015385.1 2152056 2153012 R COGs: COG2984 ABC transporter periplasmic component; InterPro IPR007487; KEGG: brm:Bmur_2584 protein of unknown function DUF534; PFAM: ABC transporter substrate binding protein; SPTR: Putative uncharacterized protein; PFAM: ABC transporter substrate binding protein; ABC transporter substrate-binding protein complement(2152056..2153012) Treponema succinifaciens DSM 2489 10432147 YP_004366188.1 CDS Tresu_2018 NC_015385.1 2153331 2154380 D COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; InterPro IPR006059; KEGG: tpp:TPASS_0655 spermidine/putrescine ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Spermidine/putrescine ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding protein; extracellular solute-binding protein 2153331..2154380 Treponema succinifaciens DSM 2489 10432148 YP_004366189.1 CDS Tresu_2019 NC_015385.1 2154659 2155537 D COGs: COG0226 ABC-type phosphate transport system periplasmic component; KEGG: sak:SAK_1927 phosphate ABC transporter, phosphate-binding protein, ATPase AAA; SPTR: Phosphate ABC transporter, phosphate-binding protein; phosphate ABC transporter substrate-binding protein 2154659..2155537 Treponema succinifaciens DSM 2489 10432149 YP_004366190.1 CDS Tresu_2020 NC_015385.1 2155619 2156470 D COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR011864:IPR000515; KEGG: cth:Cthe_1604 phosphate ABC transporter, inner membrane subunit PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Putative uncharacterized protein; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC; phosphate ABC transporter, permease protein PstA; phosphate ABC transporter permease 2155619..2156470 Treponema succinifaciens DSM 2489 10432150 YP_004366191.1 CDS Tresu_2021 NC_015385.1 2156479 2157315 D COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR005672:IPR000515; KEGG: sga:GALLO_1964 phosphate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Putative uncharacterized protein; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA; phosphate ABC transporter permease 2156479..2157315 Treponema succinifaciens DSM 2489 10432151 YP_004366192.1 CDS Tresu_2022 NC_015385.1 2157308 2158063 D COGs: COG1117 ABC-type phosphate transport system ATPase component; InterPro IPR003593:IPR005670:IPR003439; KEGG: sga:GALLO_1963 phosphate ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1); TIGRFAM: Phosphate transport system permease protein 1; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein; phosphate ABC transporter ATPase 2157308..2158063 Treponema succinifaciens DSM 2489 10432152 YP_004366193.1 CDS Tresu_2023 NC_015385.1 2158109 2158768 D COGs: COG0704 Phosphate uptake regulator; InterPro IPR008170; KEGG: cth:Cthe_1601 phosphate uptake regulator, PhoU; PFAM: PhoU; SPTR: Phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU; phosphate uptake regulator PhoU 2158109..2158768 Treponema succinifaciens DSM 2489 10432153 YP_004366194.1 CDS Tresu_2024 NC_015385.1 2158989 2160104 D hypothetical protein 2158989..2160104 Treponema succinifaciens DSM 2489 10432154 YP_004366195.1 CDS Tresu_2025 NC_015385.1 2160200 2160895 R KEGG: dps:DP2996 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2160200..2160895) Treponema succinifaciens DSM 2489 10432155 YP_004366196.1 CDS Tresu_2026 NC_015385.1 2161429 2163492 D COGs: COG2200 FOG: EAL domain; InterPro IPR001633:IPR001932:IPR000644:IPR010822; KEGG: cst:CLOST_2561 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Cystathionine beta-synthase, core; Sporulation stage II, protein E C-terminal; SMART: Diguanylate phosphodiesterase, EAL domain; protein phosphatase 2C-like; SPTR: Diguanylate cyclase/phosphodiesterase; PFAM: EAL domain; Stage II sporulation protein E (SpoIIE); diguanylate phosphodiesterase with CBS domains 2161429..2163492 Treponema succinifaciens DSM 2489 10432156 YP_004366197.1 CDS Tresu_2027 NC_015385.1 2163579 2164274 D COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sta:STHERM_c05370 transcriptional regulatory protein; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Transcriptional regulatory protein; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; transcriptional regulator 2163579..2164274 Treponema succinifaciens DSM 2489 10432157 YP_004366198.1 CDS Tresu_2028 NC_015385.1 2164278 2165696 D COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sus:Acid_6283 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; histidine kinase 2164278..2165696 Treponema succinifaciens DSM 2489 10432158 YP_004366199.1 CDS Tresu_2029 NC_015385.1 2165758 2166429 D COGs: COG2003 DNA repair protein; InterPro IPR001405; KEGG: tde:TDE0973 DNA repair protein RadC; PFAM: Uncharacterised protein family UPF0758; SPTR: DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; DNA repair protein RadC 2165758..2166429 Treponema succinifaciens DSM 2489 10432159 YP_004366200.1 CDS Tresu_2030 NC_015385.1 2166469 2167710 D COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478:IPR001254; KEGG: tde:TDE1966 trypsin domain/PDZ domain-containing protein; PFAM: peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; SPTR: Trypsin domain/PDZ domain protein; PFAM: Trypsin; peptidase S1 and S6 chymotrypsin/Hap 2166469..2167710 Treponema succinifaciens DSM 2489 10432160 YP_004366201.1 CDS Tresu_2031 NC_015385.1 2167865 2169862 D COGs: COG0556 Helicase subunit of the DNA excision repair complex; HAMAP: Excinuclease ABC, B subunit; InterProIPR014001:IPR001650:IPR004807:IPR006935:IPR 001943; KEGG: tde:TDE1369 excinuclease ABC subunit B; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: UvrABC system protein B; TIGRFAM: Excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit; UvrABC system protein B 2167865..2169862 Treponema succinifaciens DSM 2489 10432161 YP_004366202.1 CDS Tresu_2032 NC_015385.1 2169885 2170160 D hypothetical protein 2169885..2170160 Treponema succinifaciens DSM 2489 10432162 YP_004366203.1 CDS Tresu_2033 NC_015385.1 2170373 2172478 D InterPro IPR001119; KEGG: cce:Ccel_2338 hypothetical protein; PFAM: S-layer homology domain; SPTR: Putative uncharacterized protein; PFAM: S-layer homology domain; S-layer domain-containing protein 2170373..2172478 Treponema succinifaciens DSM 2489 10432163 YP_004366204.1 CDS Tresu_2034 NC_015385.1 2172787 2173017 D COGs: COG0227 ribosomal protein L28; HAMAP: ribosomal protein L28; InterPro IPR001383; KEGG: tde:TDE0991 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal L28 family; TIGRFAM: ribosomal protein L28; 50S ribosomal protein L28 2172787..2173017 Treponema succinifaciens DSM 2489 10432164 YP_004366205.1 CDS Tresu_2035 NC_015385.1 2173160 2174116 D hypothetical protein 2173160..2174116 Treponema succinifaciens DSM 2489 10432165 YP_004366206.1 CDS Tresu_2036 NC_015385.1 2174188 2175084 R COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; InterPro IPR001279; KEGG: hor:Hore_11000 beta-lactamase domain protein; PFAM: beta-lactamase-like; SPTR: beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein complement(2174188..2175084) Treponema succinifaciens DSM 2489 10432166 YP_004366207.1 CDS Tresu_2037 NC_015385.1 2175466 2176284 R COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR014284:IPR009042:IPR007627:IPR007624:IPR 007630; KEGG: lcr:LCRIS_01196 RNA polymerase sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RpoD subfamily RNA polymerase sigma-70 subunit complement(2175466..2176284) Treponema succinifaciens DSM 2489 10432167 YP_004366208.1 CDS Tresu_2038 NC_015385.1 2176710 2178170 D COGs: COG0017 aspartyl/asparaginyl-tRNA synthetase; HAMAP: asparaginyl-tRNA synthetase, class IIb; InterPro IPR004522:IPR004365:IPR004364; KEGG: tde:TDE0980 asparaginyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: asparagine--tRNA ligase; SPTR: asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase, class IIb; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase; asparaginyl-tRNA synthetase 2176710..2178170 Treponema succinifaciens DSM 2489 10432168 YP_004366209.1 CDS Tresu_2039 NC_015385.1 2178303 2179202 D KEGG: ssm:Spirs_0536 type IV pilus assembly PilZ; SPTR: Type IV pilus assembly PilZ; hypothetical protein 2178303..2179202 Treponema succinifaciens DSM 2489 10432169 YP_004366210.1 CDS Tresu_2040 NC_015385.1 2179199 2180476 D COGs: COG1295 membrane protein; InterPro IPR004664:IPR000595; KEGG: tde:TDE0150 ribonuclease BN-like family protein; PFAM: Cyclic nucleotide-binding domain; ribonuclease BN-related; SPTR: ribonuclease BN-like family protein; PFAM: ribonuclease BN-like family; Cyclic nucleotide-binding domain; cyclic nucleotide-binding protein 2179199..2180476 Treponema succinifaciens DSM 2489 10432170 YP_004366211.1 CDS Tresu_2041 NC_015385.1 2180439 2180549 R hypothetical protein complement(2180439..2180549) Treponema succinifaciens DSM 2489 10432171 YP_004366212.1 CDS Tresu_2042 NC_015385.1 2180816 2182693 D COGs: COG0519 GMP synthase PP-ATPase domain/subunit; InterPro IPR004739:IPR000991:IPR022310:IPR001674; KEGG: cpv:cgd5_4520 GMP synthase; PFAM: glutamine amidotransferase class-I, C-terminal; NAD/GMP synthase; GMP synthase, C-terminal; SPTR: Guanosine monophosphate synthase; TIGRFAM: GMP synthase, N-terminal; PFAM: GMP synthase C terminal domain; glutamine amidotransferase class-I; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit; GMP synthase, small subunit 2180816..2182693 Treponema succinifaciens DSM 2489 10432172 YP_004366213.1 CDS Tresu_2043 NC_015385.1 2182765 2184531 D COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160:IPR001633; KEGG: cce:Ccel_0626 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase/phosphodiesterase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; diguanylate cyclase/phosphodiesterase 2182765..2184531 Treponema succinifaciens DSM 2489 10432173 YP_004366214.1 CDS Tresu_2044 NC_015385.1 2184537 2184977 R COGs: COG4741 secreted endonuclease distantly related to Holliday junction resolvase; InterPro IPR019287; KEGG: tde:TDE2613 hypothetical protein; PFAM: Holliday junction resolvase-related; SPTR: Putative uncharacterized protein; PFAM: Endonuclease related to archaeal Holliday junction resolvase; Holliday junction resolvase-like protein complement(2184537..2184977) Treponema succinifaciens DSM 2489 10432174 YP_004366215.1 CDS Tresu_2046 NC_015385.1 2186289 2187200 R KEGG: fjo:Fjoh_0919 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2186289..2187200) Treponema succinifaciens DSM 2489 10432176 YP_004366216.1 CDS Tresu_2047 NC_015385.1 2187217 2187546 R hypothetical protein complement(2187217..2187546) Treponema succinifaciens DSM 2489 10432177 YP_004366217.1 CDS Tresu_2048 NC_015385.1 2188234 2188896 D COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515; KEGG: csh:Closa_2540 polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; polar amino acid ABC transporter inner membrane subunit 2188234..2188896 Treponema succinifaciens DSM 2489 10432178 YP_004366218.1 CDS Tresu_2049 NC_015385.1 2188874 2189578 D COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515; KEGG: sgo:SGO_0984 amino acid permease protein SP0710; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; polar amino acid ABC transporter inner membrane subunit 2188874..2189578 Treponema succinifaciens DSM 2489 10432179 YP_004366219.1 CDS Tresu_2050 NC_015385.1 2189595 2190347 D COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: ccb:Clocel_3469 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter; Fe(3+)-transporting ATPase 2189595..2190347 Treponema succinifaciens DSM 2489 10432180 YP_004366220.1 CDS Tresu_2051 NC_015385.1 2190415 2191251 D COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: sga:GALLO_1234 amino acid ABC transporter, substrate binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; SPTR: Bacterial extracellular solute-binding protein, family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3; ABC transporter substrate-binding protein 2190415..2191251 Treponema succinifaciens DSM 2489 10432181 YP_004366221.1 CDS Tresu_2052 NC_015385.1 2191309 2191731 D COGs: COG2510 membrane protein; InterPro IPR000620; KEGG: bpb:bpr_I2698 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: Putative membrane protein; PFAM: EamA-like transporter family; hypothetical protein 2191309..2191731 Treponema succinifaciens DSM 2489 10432182 YP_004366222.1 CDS Tresu_2053 NC_015385.1 2191746 2192729 R COGs: COG2933 SAM-dependent methyltransferase; KEGG: tde:TDE2541 hypothetical protein; SPTR: methyltransferase; PFAM: FtsJ-like methyltransferase; hypothetical protein complement(2191746..2192729) Treponema succinifaciens DSM 2489 10432183 YP_004366223.1 CDS Tresu_2054 NC_015385.1 2192726 2193115 R hypothetical protein complement(2192726..2193115) Treponema succinifaciens DSM 2489 10432184 YP_004366224.1 CDS Tresu_2055 NC_015385.1 2193117 2194850 R COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012846:IPR012001:IPR012000:IPR011766; KEGG: amt:Amet_3400 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Acetolactate synthase; SPTR: Acetolactate synthase; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit, biosynthetic type complement(2193117..2194850) Treponema succinifaciens DSM 2489 10432185 YP_004366225.1 CDS Tresu_2056 NC_015385.1 2194959 2196650 R COGs: COG0129 dihydroxyacid dehydratase/phosphogluconate dehydratase; HAMAP: dihydroxy-acid dehydratase; InterPro IPR004404:IPR000581; KEGG: bpb:bpr_I1338 dihydroxy-acid dehydratase IlvD; PFAM: dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: dihydroxy-acid dehydratase; SPTR: dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase; dihydroxy-acid dehydratase complement(2194959..2196650) Treponema succinifaciens DSM 2489 10432186 YP_004366226.1 CDS Tresu_2057 NC_015385.1 2196827 2197864 R COGs: COG0533 Metal-dependent protease with possible chaperone activity; HAMAP: peptidase M22, O-sialoglycoprotein peptidase; InterPro IPR022450:IPR017861:IPR000905; KEGG: tde:TDE2504 ATPase AAA DNA-binding/iron metalloprotein/AP endonuclease; PFAM: peptidase M22, glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Probable O-sialoglycoprotein endopeptidase; TIGRFAM: peptidase M22, O-sialoglycoprotein peptidase; peptidase M22, glycoprotease, subgroup; PFAM: glycoprotease family; TIGRFAM: ATPase AAA glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family; O-sialoglycoprotein endopeptidase complement(2196827..2197864) Treponema succinifaciens DSM 2489 10432187 YP_004366227.1 CDS Tresu_2058 NC_015385.1 2197892 2199061 R COGs: COG2861 conserved hypothetical protein; InterPro IPR006837; KEGG: tde:TDE2503 hypothetical protein; PFAM: protein of unknown function DUF610, YibQ; SPTR: Conserved domain protein; PFAM: Divergent polysaccharide deacetylase; hypothetical protein complement(2197892..2199061) Treponema succinifaciens DSM 2489 10432188 YP_004366228.1 CDS Tresu_2059 NC_015385.1 2199091 2200044 R COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: ssm:Spirs_4300 ParB-like partition protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: ParB-like partition protein; TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins; parB-like partition protein complement(2199091..2200044) Treponema succinifaciens DSM 2489 10432189 YP_004366229.1 CDS Tresu_2060 NC_015385.1 2200037 2200792 R COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: tde:TDE0607 ParA family ATPase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: ParA family ATPase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Cobyrinic acid ac-diamide synthase complement(2200037..2200792) Treponema succinifaciens DSM 2489 10432190 YP_004366230.1 CDS Tresu_2061 NC_015385.1 2200891 2202240 R COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: ere:EUBREC_1019 hypothetical protein; PFAM: Multi antimicrobial extrusion protein; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: ATPase AAA efflux protein, MATE family; MATE efflux family protein complement(2200891..2202240) Treponema succinifaciens DSM 2489 10432191 YP_004366231.1 CDS Tresu_2063 NC_015385.1 2203827 2205608 D COGs: COG1109 phosphomannomutase; InterPro IPR005844:IPR005845:IPR005846; KEGG: tde:TDE1998 phosphohexose mutase family protein; PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; alpha-D-phosphohexomutase, alpha/beta/alpha domain II; alpha-D-phosphohexomutase, alpha/beta/alpha domain III; SPTR: phosphoglucomutase; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 2203827..2205608 Treponema succinifaciens DSM 2489 10432193 YP_004366232.1 CDS Tresu_2064 NC_015385.1 2205669 2206319 D COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterPro IPR006055:IPR006054:IPR013520; KEGG: tde:TDE1999 DNA polymerase III domain-containing protein; PFAM: Exonuclease, RNase T/DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: DNA polymerase III domain protein; TIGRFAM: DNA polymerase III subunit epsilon; manually curated; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III subunit epsilon family; DNA polymerase III subunit epsilon 2205669..2206319 Treponema succinifaciens DSM 2489 10432194 YP_004366233.1 CDS Tresu_2065 NC_015385.1 2206370 2207725 D COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: csh:Closa_3357 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein; SPTR: Putative efflux protein, MATE family; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: ATPase AAA efflux protein, MATE family; MATE efflux family protein 2206370..2207725 Treponema succinifaciens DSM 2489 10432195 YP_004366234.1 CDS Tresu_2066 NC_015385.1 2207752 2208618 R COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR002482:IPR018392:IPR016047; KEGG: tde:TDE1297 LysM/M23/M37 peptidase; PFAM: peptidase M23; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup; SPTR: LysM domain/M23/M37 peptidase domain protein; PFAM: peptidase family M23; LysM domain; peptidase M23 complement(2207752..2208618) Treponema succinifaciens DSM 2489 10432196 YP_004366235.1 CDS Tresu_2067 NC_015385.1 2208672 2209463 R COGs: COG0289 dihydrodipicolinate reductase; HAMAP: dihydrodipicolinate reductase, bacterial/plant; InterPro IPR011770:IPR000846:IPR022663; KEGG: sta:STHERM_c08680 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase, C-terminal; dihydrodipicolinate reductase, N-terminal; PRIAM: dihydrodipicolinate reductase; SPTR: dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase, bacterial/plant; PFAM: dihydrodipicolinate reductase, N-terminus; dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(2208672..2209463) Treponema succinifaciens DSM 2489 10432197 YP_004366236.1 CDS Tresu_2068 NC_015385.1 2209482 2210807 R COGs: COG0527 aspartokinase; InterPro IPR001341:IPR001048:IPR002912; KEGG: ath:AT5G13280 AK-LYS1 (ASPARTATE KINASE 1); aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; PRIAM: aspartate kinase; SPTR: aspartokinase; TIGRFAM: aspartate kinase domain; PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase; aspartate kinase complement(2209482..2210807) Treponema succinifaciens DSM 2489 10432198 YP_004366237.1 CDS Tresu_2069 NC_015385.1 2210822 2212177 R COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: cth:Cthe_3196 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033563; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF1015); hypothetical protein complement(2210822..2212177) Treponema succinifaciens DSM 2489 10432199 YP_004366238.1 CDS Tresu_2070 NC_015385.1 2212228 2213661 D COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: ssm:Spirs_4048 RNA polymerase, sigma 54 subunit, RpoN; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54, DNA binding domain; Sigma-54 factor, core binding domain; TIGRFAM: RNA polymerase sigma-54 factor; RNA polymerase sigma 54 subunit RpoN 2212228..2213661 Treponema succinifaciens DSM 2489 10432200 YP_004366239.1 CDS Tresu_2071 NC_015385.1 2213736 2214026 R KEGG: tde:TDE1296 ribosomal subunit interface protein, ATPase AAA; SPTR: ribosomal subunit interface protein, ATPase AAA; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; ribosomal subunit interface protein, ATPase AAA complement(2213736..2214026) Treponema succinifaciens DSM 2489 10432201 YP_004366240.1 CDS Tresu_2072 NC_015385.1 2214211 2214525 D hypothetical protein 2214211..2214525 Treponema succinifaciens DSM 2489 10432202 YP_004366241.1 CDS Tresu_2073 NC_015385.1 2214606 2216270 R COGs: COG1283 Na+/phosphate symporter; InterPro IPR004633:IPR003841:IPR008170; KEGG: tde:TDE1964 Na/Pi cotransporter family protein; PFAM: Na/Pi-cotransporter; PhoU; SPTR: Na/Pi cotransporter family protein; TIGRFAM: Na/Pi co-transporter II-related; PFAM: PhoU domain; Na+/Pi-cotransporter; TIGRFAM: Na/Pi-cotransporter; Na/Pi-cotransporter II-like protein complement(2214606..2216270) Treponema succinifaciens DSM 2489 10432203 YP_004366242.1 CDS Tresu_2075 NC_015385.1 2216906 2217451 R InterPro IPR000064; KEGG: dth:DICTH_0266 chitinase 3; PFAM: NLP/P60; SPTR: Chitinase 3; PFAM: NlpC/P60 family; NLP/P60 protein complement(2216906..2217451) Treponema succinifaciens DSM 2489 10432205 YP_004366243.1 CDS Tresu_2076 NC_015385.1 2217728 2219590 R COGs: COG1274 phosphoenolpyruvate carboxykinase (GTP); HAMAP: phosphoenolpyruvate carboxykinase, GTP-utilising; InterPro IPR008209; KEGG: fsu:Fisuc_2949 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase, GTP-utilising; PRIAM: phosphoenolpyruvate carboxykinase (GTP); SPTR: phosphoenolpyruvate carboxykinase [GTP]; PFAM: phosphoenolpyruvate carboxykinase; phosphoenolpyruvate carboxykinase complement(2217728..2219590) Treponema succinifaciens DSM 2489 10432206 YP_004366244.1 CDS Tresu_2077 NC_015385.1 2219951 2220523 R COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); HAMAP: Translation elongation factor P; InterPro IPR015365:IPR011768:IPR013185:IPR001059; KEGG: ipo:Ilyop_2607 translation elongation factor P (EF-P); PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like; SMART: Elongation factor P, C-terminal; SPTR: Translation elongation factor P (EF-P); TIGRFAM: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P; elongation factor P complement(2219951..2220523) Treponema succinifaciens DSM 2489 10432207 YP_004366245.1 CDS Tresu_2078 NC_015385.1 2220625 2221872 R COGs: COG4394 conserved hypothetical protein; InterPro IPR016633; KEGG: fnu:FN0719 ATPase AAA cytoplasmic protein; PFAM: Uncharacterised conserved protein UCP015557; SPTR: Hypothetical Cytosolic protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2331); TIGRFAM: conserved hypothetical protein, PP_1857 family; hypothetical protein complement(2220625..2221872) Treponema succinifaciens DSM 2489 10432208 YP_004366246.1 CDS Tresu_2079 NC_015385.1 2221914 2223479 D COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482:IPR000523; KEGG: tde:TDE1995 magnesium chelatase family protein; PFAM: Magnesium chelatase, ChlI subunit; SPTR: Magnesium chelatase family protein; TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; Mg chelatase subunit ChlI 2221914..2223479 Treponema succinifaciens DSM 2489 10432209 YP_004366247.1 CDS Tresu_2080 NC_015385.1 2223800 2225362 D COGs: COG0514 Superfamily II DNA helicase; InterProIPR014001:IPR001650:IPR002121:IPR004589:IPR 011545; KEGG: tde:TDE0326 ATP-dependent DNA helicase RecQ; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: Helicase conserved C-terminal domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; RecQ familyATP-dependent DNA helicase 2223800..2225362 Treponema succinifaciens DSM 2489 10432211 YP_004366248.1 CDS Tresu_2081 NC_015385.1 2225410 2227098 R InterPro IPR004155; KEGG: tde:TDE0437 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT-like repeat; SPTR: Putative uncharacterized protein; PBS lyase HEAT domain-containing protein repeat-containing protein complement(2225410..2227098) Treponema succinifaciens DSM 2489 10432212 YP_004366249.1 CDS Tresu_2082 NC_015385.1 2227133 2228269 R COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; InterPro IPR004803:IPR002616; KEGG: tde:TDE0438 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming; queuine tRNA-ribosyltransferase complement(2227133..2228269) Treponema succinifaciens DSM 2489 10432213 YP_004366250.1 CDS Tresu_2083 NC_015385.1 2228294 2229364 R COGs: COG0795 permease; InterPro IPR005495; KEGG: tde:TDE1044 hypothetical protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Membrane protein, ATPase AAA; PFAM: Predicted permease YjgP/YjgQ family; YjgP/YjgQ family permease complement(2228294..2229364) Treponema succinifaciens DSM 2489 10432214 YP_004366251.1 CDS Tresu_2084 NC_015385.1 2229361 2230704 R COGs: COG0795 permease; InterPro IPR005495; KEGG: tde:TDE1043 hypothetical protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Membrane protein, ATPase AAA; PFAM: Predicted permease YjgP/YjgQ family; YjgP/YjgQ family permease complement(2229361..2230704) Treponema succinifaciens DSM 2489 10432215 YP_004366252.1 CDS Tresu_2085 NC_015385.1 2230710 2231153 R COGs: COG0756 dUTPase; HAMAP: deoxyUTP pyrophosphatase; InterPro IPR008181:IPR008180; KEGG: tde:TDE1042 deoxyuridine 5'triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase domain; PRIAM: dUTP diphosphatase; SPTR: deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyUTP pyrophosphatase; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut); deoxyuridine 5'-triphosphate nucleotidohydrolase complement(2230710..2231153) Treponema succinifaciens DSM 2489 10432216 YP_004366253.1 CDS Tresu_2086 NC_015385.1 2231138 2232424 R COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: aoe:Clos_1536 peptidase M16 domain-containing protein; PFAM: peptidase M16, N-terminal; peptidase M16, C-terminal; PRIAM: processing peptidase; SPTR: peptidase M16 domain protein; PFAM: peptidase M16 inactive domain; Insulinase (peptidase family M16); processing peptidase complement(2231138..2232424) Treponema succinifaciens DSM 2489 10432217 YP_004366254.1 CDS Tresu_2087 NC_015385.1 2232532 2234622 R COGs: COG1185 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: polyribonucleotide nucleotidyltransferase; InterProIPR004087:IPR022967:IPR012162:IPR001247:IPR 015847:IPR015848:IPR018111:IPR003029; KEGG: tde:TDE1041 polynucleotide phosphorylase/polyadenylase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; ribosomal protein S1, RNA-binding domain; PRIAM: polyribonucleotide nucleotidyltransferase; SMART: RNA-binding domain, S1; K Homology; SPTR: polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase; polyribonucleotide nucleotidyltransferase complement(2232532..2234622) Treponema succinifaciens DSM 2489 10432218 YP_004366255.1 CDS Tresu_2088 NC_015385.1 2234829 2235098 R COGs: COG0184 ribosomal protein S15P/S13E; InterPro IPR005290:IPR000589; KEGG: tde:TDE1040 30S ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial-type; PFAM: ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle; 30S ribosomal protein S15 complement(2234829..2235098) Treponema succinifaciens DSM 2489 10432219 YP_004366256.1 CDS Tresu_2089 NC_015385.1 2235260 2237122 R COGs: COG0130 Pseudouridine synthase; HAMAP: tRNA pseudouridine synthase II, TruB; InterPro IPR014780:IPR004821:IPR002501:IPR015864; KEGG: tde:TDE1104 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II; FAD synthetase; SPTR: tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase II, TruB; Cytidyltransferase-related; manually curated; PFAM: TruB family pseudouridylate synthase (N terminal domain); FAD synthetase; TIGRFAM: tRNA pseudouridine 55 synthase; tRNA pseudouridine synthase B complement(2235260..2237122) Treponema succinifaciens DSM 2489 10432220 YP_004366257.1 CDS Tresu_2090 NC_015385.1 2237091 2237495 R COGs: COG0858 ribosome-binding factor A; HAMAP: ribosome-binding factor A; InterPro IPR000238; KEGG: tde:TDE1105 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; ribosome-binding factor A complement(2237091..2237495) Treponema succinifaciens DSM 2489 10432221 YP_004366258.1 CDS Tresu_2091 NC_015385.1 2237507 2240242 R COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR000178:IPR005225:IPR006847:IPR000795:IPR 004161; KEGG: tde:TDE1106 translation initiation factor IF-2; PFAM: protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; SPTR: Translation initiation factor IF-2; TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2; translation initiation factor IF-2 complement(2237507..2240242) Treponema succinifaciens DSM 2489 10432222 YP_004366259.1 CDS Tresu_2092 NC_015385.1 2240261 2241715 R COGs: COG0195 Transcription elongation factor; InterPro IPR022967:IPR010213:IPR013735; KEGG: sta:STHERM_c11190 hypothetical protein; PFAM: Transcription factor NusA, N-terminal; SMART: RNA-binding domain, S1; SPTR: Putative uncharacterized protein; TIGRFAM: Transcription termination factor NusA; PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA; NusA antitermination factor complement(2240261..2241715) Treponema succinifaciens DSM 2489 10432223 YP_004366260.1 CDS Tresu_2093 NC_015385.1 2241727 2242194 R InterPro IPR003728; KEGG: tde:TDE1108 hypothetical protein; PFAM: ribosome maturation factor RimP; SPTR: ribosome maturation factor rimP; PFAM: Uncharacterised BCR, YhbC family COG0779; hypothetical protein complement(2241727..2242194) Treponema succinifaciens DSM 2489 10432224 YP_004366261.1 CDS Tresu_2094 NC_015385.1 2242399 2243529 R COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein complement(2242399..2243529) Treponema succinifaciens DSM 2489 10432225 YP_004366262.1 CDS Tresu_2095 NC_015385.1 2243909 2244499 D InterPro IPR008173:IPR008172; KEGG: bdu:BDU_726 adenylyl cyclase, CyaB-type, ATPase AAA; PFAM: adenylate cyclase; SPTR: adenylyl cyclase, CyaB-type, ATPase AAA; TIGRFAM: adenylyl cyclase CyaB; PFAM: CYTH domain; TIGRFAM: adenylyl cyclase CyaB, ATPase AAA; adenylyl cyclase CyaB 2243909..2244499 Treponema succinifaciens DSM 2489 10432226 YP_004366263.1 CDS Tresu_2096 NC_015385.1 2244541 2245188 D InterPro IPR010380; KEGG: pjd:Pjdr2_0672 protein of unknown function DUF975; PFAM: protein of unknown function DUF975; SPTR: Integral membrane protein; PFAM: protein of unknown function (DUF975); hypothetical protein 2244541..2245188 Treponema succinifaciens DSM 2489 10432227 YP_004366264.1 CDS Tresu_2097 NC_015385.1 2245218 2246249 D COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004635:IPR002142; KEGG: cth:Cthe_1421 signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; SPTR: Signal peptide peptidase SppA, 36K type; TIGRFAM: peptidase S49, SppA; PFAM: peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 36K type 2245218..2246249 Treponema succinifaciens DSM 2489 10432228 YP_004366265.1 CDS Tresu_2098 NC_015385.1 2246240 2246818 R COGs: COG2137 conserved hypothetical protein; HAMAP: Regulatory protein RecX; InterPro IPR003783; KEGG: tde:TDE0854 recombination regulator RecX; PFAM: Regulatory protein RecX; SPTR: Regulatory protein recX; PFAM: RecX family; Regulatory protein recX complement(2246240..2246818) Treponema succinifaciens DSM 2489 10432229 YP_004366266.1 CDS Tresu_2099 NC_015385.1 2246857 2247249 R COGs: COG0103 ribosomal protein S9; InterPro IPR000754; KEGG: ssm:Spirs_3752 ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: 30S ribosomal protein S9; PFAM: ribosomal protein S9/S16; 30S ribosomal protein S9 complement(2246857..2247249) Treponema succinifaciens DSM 2489 10432230 YP_004366267.1 CDS Tresu_2100 NC_015385.1 2247264 2247692 R COGs: COG0102 ribosomal protein L13; InterPro IPR005823:IPR005822; KEGG: sth:STH3041 50S ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial-type; PFAM: ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type; 50S ribosomal protein L13 complement(2247264..2247692) Treponema succinifaciens DSM 2489 10432231 YP_004366268.1 CDS Tresu_2101 NC_015385.1 2247881 2248102 R SPTR: Putative uncharacterized protein; hypothetical protein complement(2247881..2248102) Treponema succinifaciens DSM 2489 10432232 YP_004366269.1 CDS Tresu_2102 NC_015385.1 2248173 2248709 R COGs: COG1592 Rubrerythrin; InterPro IPR003251; KEGG: cpy:Cphy_0524 rubrerythrin; PFAM: Rubrerythrin; SPTR: Putative uncharacterized protein; PFAM: Rubrerythrin; rubrerythrin complement(2248173..2248709) Treponema succinifaciens DSM 2489 10432233 YP_004366270.1 CDS Tresu_2103 NC_015385.1 2248819 2249151 R COGs: COG1687 branched-chain amino acid permease (azaleucine resistance); InterPro IPR008407; KEGG: mba:Mbar_A2617 branched chain amino acid transport protein AzlD; PFAM: Branched-chain amino acid transport, AzlD; SPTR: Branched-chain amino acid transport; PFAM: Branched-chain amino acid transport protein (AzlD); branched-chain amino acid transport complement(2248819..2249151) Treponema succinifaciens DSM 2489 10432234 YP_004366271.1 CDS Tresu_2104 NC_015385.1 2249148 2249903 R COGs: COG1296 branched-chain amino acid permease (azaleucine resistance); InterPro IPR011606; KEGG: mma:MM_3262 branched chain amino acid ABC transporter; PFAM: Branched-chain amino acid transport, permease; SPTR: Branched-chain amino acid transport protein; PFAM: AzlC protein; TIGRFAM: 4-azaleucine resistance probable transporter AzlC; AzlC family protein complement(2249148..2249903) Treponema succinifaciens DSM 2489 10432235 YP_004366272.1 CDS Tresu_2105 NC_015385.1 2250144 2251334 D COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593:IPR003439:IPR013611; KEGG: tpp:TPASS_0652 spermidine/putrescine ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; Transport-associated OB, type 2; PRIAM: polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Spermidine/putrescine import ATP-binding protein PotA; PFAM: ABC transporter; TOBE domain; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit; polyamine-transporting ATPase 2250144..2251334 Treponema succinifaciens DSM 2489 10432236 YP_004366273.1 CDS Tresu_2106 NC_015385.1 2251331 2252350 D COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; InterPro IPR000515; KEGG: tpp:TPASS_0653 spermidine/putrescine ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Spermidine/putrescine transport system permease protein PotB; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease 2251331..2252350 Treponema succinifaciens DSM 2489 10432237 YP_004366274.1 CDS Tresu_2107 NC_015385.1 2252347 2253219 D COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; InterPro IPR000515; KEGG: tpp:TPASS_0654 spermidine/putrescine ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Spermidine/putrescine ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease 2252347..2253219 Treponema succinifaciens DSM 2489 10432238 YP_004366275.1 CDS Tresu_2108 NC_015385.1 2253278 2254321 D COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; KEGG: tpp:TPASS_0655 spermidine/putrescine ABC transporter, periplasmic binding protein; SPTR: Spermidine/putrescine ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding protein; spermidine/putrescine ABC transporter substrate-binding protein 2253278..2254321 Treponema succinifaciens DSM 2489 10432239 YP_004366276.1 CDS Tresu_2109 NC_015385.1 2254323 2255714 D COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase; InterPro IPR006264:IPR001986; KEGG: pcu:pc0882 ATPase AAA 3-phosphoshikimate 1-carboxyvinyltransferase(5-enolpyruvylshikimate-3- phosphate synthase, EpsP synthase); PFAM: Enolpyruvate transferase domain; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase 2; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 2254323..2255714 Treponema succinifaciens DSM 2489 10432240 YP_004366277.1 CDS Tresu_2111 NC_015385.1 2257540 2258610 D COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR000715; KEGG: tde:TDE2249 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4; PRIAM:phospho-N-acetylmuramoyl-pentapeptide-transfe rase; SPTR:phospho-N-acetylmuramoyl-pentapeptide-transfer ase; PFAM: glycosyl transferase family 4; phospho-N-acetylmuramoyl-pentapeptide- transferase 2257540..2258610 Treponema succinifaciens DSM 2489 10432242 YP_004366278.1 CDS Tresu_2112 NC_015385.1 2258839 2259960 D COGs: COG2768 Uncharacterized Fe-S center protein; InterPro IPR001450; KEGG: clj:CLJU_c26960 ATPase AAA Fe-S cluster protein; PFAM: 4Fe-4S binding domain; SPTR: Uncharacterized Fe-S center protein; PFAM: Domain of unknown function (DUF362); 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2258839..2259960 Treponema succinifaciens DSM 2489 10432243 YP_004366279.1 CDS Tresu_2113 NC_015385.1 2260163 2260570 D hypothetical protein 2260163..2260570 Treponema succinifaciens DSM 2489 10432244 YP_004366280.1 CDS Tresu_2114 NC_015385.1 2260796 2261731 D InterPro IPR021139; KEGG: cch:Cag_1985 cold shock protein; PFAM: Domain of unknown function DUF88; SPTR: Cold shock protein; PFAM: protein of unknown function DUF88; hypothetical protein 2260796..2261731 Treponema succinifaciens DSM 2489 10432245 YP_004366281.1 CDS Tresu_2115 NC_015385.1 2261757 2262611 D COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: pin:Ping_0943 allergen V5/TPX-1 family protein; PFAM: CAP domain; SPTR: Allergen V5/Tpx-1 family protein; PFAM: Cysteine-rich secretory protein family; hypothetical protein 2261757..2262611 Treponema succinifaciens DSM 2489 10432246 YP_004366282.1 CDS Tresu_2116 NC_015385.1 2262811 2264088 R COGs: COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase; InterPro IPR004839; KEGG: vha:VIBHAR_00447 valine--pyruvate transaminase; PFAM: Aminotransferase, class I/classII; PRIAM: valine--pyruvate transaminase; SPTR: valine--pyruvate aminotransferase; PFAM: Aminotransferase class I and II; valine--pyruvate transaminase complement(2262811..2264088) Treponema succinifaciens DSM 2489 10432247 YP_004366283.1 CDS Tresu_2117 NC_015385.1 2264108 2266675 R COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593:IPR004176:IPR003959:IPR001943:IPR 013093:IPR019489; KEGG: ssm:Spirs_1928 ATPase AAA-2 domain protein; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATPase AAA-2 domain protein; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif; ATPase AAA-2 domain-containing protein complement(2264108..2266675) Treponema succinifaciens DSM 2489 10432248 YP_004366284.1 CDS Tresu_2118 NC_015385.1 2266685 2267797 R COGs: COG3869 arginine kinase; InterPro IPR022414; KEGG: tde:TDE2037 ATP:guanido phosphotransferase domain-containing protein; PFAM: ATP:guanido phosphotransferase, catalytic domain; SPTR: Putative ATP:guanido phosphotransferase domain protein; PFAM: ATP:guanido phosphotransferase, C-terminal catalytic domain; ATP:guanido phosphotransferase, catalytic domain-containing protein complement(2266685..2267797) Treponema succinifaciens DSM 2489 10432249 YP_004366285.1 CDS Tresu_2119 NC_015385.1 2267797 2268333 R COGs: COG3880 Uncharacterized protein with conserved CXXC pairs; InterPro IPR001943; KEGG: ssm:Spirs_1926 UvrB/UvrC protein; PFAM: UvrB/UvrC protein; SPTR: UvrB/UvrC protein; PFAM: UvrB/uvrC motif; UvrB/UvrC protein complement(2267797..2268333) Treponema succinifaciens DSM 2489 10432250 YP_004366286.1 CDS Tresu_2120 NC_015385.1 2268372 2269715 R COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: tde:TDE2039 lipoprotein releasing system, permease protein, ATPase AAA; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: lipoprotein releasing system, permease protein, ATPase AAA; PFAM: Predicted permease; hypothetical protein complement(2268372..2269715) Treponema succinifaciens DSM 2489 10432251 YP_004366287.1 CDS Tresu_2121 NC_015385.1 2269712 2270404 R COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: tde:TDE2040 lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: lipoprotein-releasing system ATP-binding protein LolD; PFAM: ABC transporter; phosphonate-transporting ATPase complement(2269712..2270404) Treponema succinifaciens DSM 2489 10432252 YP_004366288.1 CDS Tresu_2122 NC_015385.1 2270397 2271677 R COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: tde:TDE2041 lipoprotein releasing system, permease protein, ATPase AAA; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: lipoprotein releasing system, permease protein, ATPase AAA; PFAM: Predicted permease; hypothetical protein complement(2270397..2271677) Treponema succinifaciens DSM 2489 10432253 YP_004366289.1 CDS Tresu_2123 NC_015385.1 2271698 2272564 R hypothetical protein complement(2271698..2272564) Treponema succinifaciens DSM 2489 10432254 YP_004366290.1 CDS Tresu_2124 NC_015385.1 2272564 2273439 R COGs: COG0552 Signal recognition particle GTPase; InterPro IPR003593:IPR000897:IPR004390; KEGG: tde:TDE2043 signal recognition particle-docking protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; SMART: Signal recognition particle, SRP54 subunit, GTPase; ATPase, AAA+ type, core; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY; signal recognition particle-docking protein FtsY complement(2272564..2273439) Treponema succinifaciens DSM 2489 10432255 YP_004366291.1 CDS Tresu_2125 NC_015385.1 2273460 2275118 R KEGG: tde:TDE2044 ATPase AAA lipoprotein; SPTR: lipoprotein, ATPase AAA; hypothetical protein complement(2273460..2275118) Treponema succinifaciens DSM 2489 10432256 YP_004366292.1 CDS Tresu_2126 NC_015385.1 2275121 2276267 R PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2; hypothetical protein complement(join(2275121..2276185,2276187..2276267)) Treponema succinifaciens DSM 2489 10432257 YP_004366293.1 CDS Tresu_2127 NC_015385.1 2276272 2276562 R KEGG: tde:TDE2047 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2; hypothetical protein complement(2276272..2276562) Treponema succinifaciens DSM 2489 10432258 YP_004366294.1 CDS Tresu_2128 NC_015385.1 2276836 2277876 D KEGG: ssm:Spirs_1916 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2276836..2277876 Treponema succinifaciens DSM 2489 10432259 YP_004366295.1 CDS Tresu_2129 NC_015385.1 2278282 2278845 R COGs: COG0350 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: cth:Cthe_1554 methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR: Putative uncharacterized protein; TIGRFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(2278282..2278845) Treponema succinifaciens DSM 2489 10432260 YP_004366296.1 CDS Tresu_2130 NC_015385.1 2278846 2279340 R SPTR: Putative uncharacterized protein; hypothetical protein complement(2278846..2279340) Treponema succinifaciens DSM 2489 10432261 YP_004366297.1 CDS Tresu_2131 NC_015385.1 2279343 2280263 R COGs: COG4866 conserved hypothetical protein; KEGG: bvu:BVU_0520 hypothetical protein; SPTR: Uncharacterized conserved protein; PFAM: Uncharacterized conserved protein (DUF2156); hypothetical protein complement(2279343..2280263) Treponema succinifaciens DSM 2489 10432262 YP_004366298.1 CDS Tresu_2132 NC_015385.1 2280396 2280737 R hypothetical protein complement(2280396..2280737) Treponema succinifaciens DSM 2489 10432263 YP_004366299.1 CDS Tresu_2133 NC_015385.1 2280762 2282444 D COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR001902:IPR011547:IPR002645; KEGG: bth:BT_3181 ATPase AAA sulfate transporter, permease; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Putative uncharacterized protein; TIGRFAM: Sulphate anion transporter; PFAM: Sulfate transporter family; STAS domain; TIGRFAM: high affinity sulphate transporter 1; sulfate transporter 2280762..2282444 Treponema succinifaciens DSM 2489 10432264 YP_004366300.1 CDS Tresu_2134 NC_015385.1 2282528 2283454 D COGs: COG1159 GTPase; HAMAP: GTP-binding protein Era; InterPro IPR005225:IPR005662:IPR002917:IPR004044; KEGG: tde:TDE1895 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; SPTR: GTPase Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: GTPase of unknown function; KH domain; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain; GTP-binding protein Era-like-protein 2282528..2283454 Treponema succinifaciens DSM 2489 10432265 YP_004366301.1 CDS Tresu_2135 NC_015385.1 2283568 2284698 D COGs: COG0012 GTPase probable translation factor; InterPro IPR004396:IPR002917:IPR013029; KEGG: tde:TDE0305 GTP-dependent nucleic acid-binding protein EngD; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related; SPTR: GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: GTPase of unknown function; protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF; GTP-binding protein YchF 2283568..2284698 Treponema succinifaciens DSM 2489 10432266 YP_004366302.1 CDS Tresu_2136 NC_015385.1 2284747 2286069 R COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: ana:all4080 ribosomal large chain pseudouridine synthase A; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; pseudouridine synthase complement(2284747..2286069) Treponema succinifaciens DSM 2489 10432267 YP_004366303.1 CDS Tresu_2137 NC_015385.1 2286077 2286907 R COGs: COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; InterPro IPR013749; KEGG: cco:CCC13826_1956 phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; SPTR: phosphomethylpyrimidine kinase type-1; PFAM: phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase type-1 complement(2286077..2286907) Treponema succinifaciens DSM 2489 10432268 YP_004366304.1 CDS Tresu_2138 NC_015385.1 2287008 2288465 D COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524:IPR004839; KEGG: ere:EUBREC_2949 hypothetical protein; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR; SPTR: Putative uncharacterized protein; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family; GntR family transcriptional regulator 2287008..2288465 Treponema succinifaciens DSM 2489 10432269 YP_004366305.1 CDS Tresu_2139 NC_015385.1 2288487 2289065 R COGs: COG0503 adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; HAMAP: xanthine phosphoribosyltransferase; InterPro IPR010079:IPR000836; KEGG: gvg:HMPREF0421_21105 xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: xanthine phosphoribosyltransferase; SPTR: xanthine phosphoribosyltransferase; TIGRFAM: xanthine phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: xanthine phosphoribosyltransferase; xanthine phosphoribosyltransferase complement(2288487..2289065) Treponema succinifaciens DSM 2489 10432270 YP_004366306.1 CDS Tresu_2140 NC_015385.1 2289109 2291019 R COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterPro IPR007685:IPR004811:IPR006674:IPR004095; KEGG: ssm:Spirs_3047 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD subdomain; TGS; PRIAM: GTP diphosphokinase; SMART: RelA/SpoT; SPTR: GTP pyrophosphokinase; TIGRFAM: RelA/SpoT protein; PFAM: Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family; (p)ppGpp synthetase I SpoT/RelA complement(2289109..2291019) Treponema succinifaciens DSM 2489 10432271 YP_004366307.1 CDS Tresu_2141 NC_015385.1 2291081 2292547 R COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: tde:TDE2262 U32 family peptidase; PFAM: peptidase U32; SPTR: peptidase, U32 family; PFAM: peptidase family U32; peptidase U32 complement(2291081..2292547) Treponema succinifaciens DSM 2489 10432272 YP_004366308.1 CDS Tresu_2142 NC_015385.1 2292551 2293507 R COGs: COG0657 Esterase/lipase; InterPro IPR013094; KEGG: tde:TDE2263 acetyl hydrolase, ATPase AAA; SPTR: Acetyl hydrolase, ATPase AAA; PFAM: alpha/beta hydrolase fold; acetyl hydrolase, ATPase AAA complement(2292551..2293507) Treponema succinifaciens DSM 2489 10432273 YP_004366309.1 CDS Tresu_2143 NC_015385.1 2293532 2294470 D COGs: COG1897 Homoserine trans-succinylase; HAMAP: Homoserine O-succinyltransferase; InterPro IPR005697; KEGG: pmo:Pmob_0733 homoserine O-succinyltransferase; PFAM: Homoserine O-succinyltransferase; PRIAM: Homoserine O-succinyltransferase; SPTR: Homoserine O-succinyltransferase; TIGRFAM: Homoserine O-succinyltransferase; PFAM: Homoserine O-succinyltransferase; TIGRFAM: homoserine O-succinyltransferase; Homoserine O-succinyltransferase 2293532..2294470 Treponema succinifaciens DSM 2489 10432274 YP_004366310.1 CDS Tresu_2144 NC_015385.1 2294489 2294743 D KEGG: shi:Shel_18430 transcriptional regulator, TetR family; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family; hypothetical protein 2294489..2294743 Treponema succinifaciens DSM 2489 10432275 YP_004366311.1 CDS Tresu_2145 NC_015385.1 2295131 2296075 D COGs: COG0863 DNA modification methylase; InterPro IPR002941; KEGG: cyn:Cyan7425_0828 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; SPTR: DNA (Cytosine-5-)-methyltransferase; PFAM: DNA methylase; DNA methylase N-4/N-6 domain-containing protein 2295131..2296075 Treponema succinifaciens DSM 2489 10432276 YP_004366312.1 CDS Tresu_2146 NC_015385.1 2296081 2297442 R COGs: COG4487 conserved hypothetical protein; InterPro IPR019219; KEGG: sga:GALLO_1165 hypothetical protein; PFAM: protein of unknown function DUF2130; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2130); hypothetical protein complement(2296081..2297442) Treponema succinifaciens DSM 2489 10432277 YP_004366313.1 CDS Tresu_2147 NC_015385.1 2297552 2298139 D COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: pgi:PG0864 multiple promoter invertase; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal; SPTR: Resolvase, N-terminal domain protein; PFAM: Resolvase, N terminal domain; Helix-turn-helix domain of resolvase; resolvase 2297552..2298139 Treponema succinifaciens DSM 2489 10432278 YP_004366314.1 CDS Tresu_2148 NC_015385.1 2298628 2299056 D KEGG: dhd:Dhaf_2679 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2298628..2299056 Treponema succinifaciens DSM 2489 10432279 YP_004366315.1 CDS Tresu_2149 NC_015385.1 2299060 2299245 R hypothetical protein complement(2299060..2299245) Treponema succinifaciens DSM 2489 10432280 YP_004366316.1 CDS Tresu_2150 NC_015385.1 2299331 2301415 R COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: tde:TDE2270 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: methyl-accepting chemotaxis protein; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer complement(2299331..2301415) Treponema succinifaciens DSM 2489 10432281 YP_004366317.1 CDS Tresu_2151 NC_015385.1 2301906 2303414 D COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR000644:IPR001093; KEGG: cbe:Cbei_2114 inosine 5-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; PRIAM: IMP dehydrogenase; SMART: Cystathionine beta-synthase, core; SPTR: Inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase; IMP dehydrogenase 2301906..2303414 Treponema succinifaciens DSM 2489 10432282 YP_004366318.1 CDS Tresu_2152 NC_015385.1 2303460 2304686 D COGs: COG0104 adenylosuccinate synthase; HAMAP: adenylosuccinate synthetase; InterPro IPR001114; KEGG: ssm:Spirs_2415 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase; adenylosuccinate synthetase 2303460..2304686 Treponema succinifaciens DSM 2489 10432283 YP_004366319.1 CDS Tresu_2153 NC_015385.1 2304763 2306112 R COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: vpa:VPA0061 hypothetical protein; PFAM: Multi antimicrobial extrusion protein; SPTR: Hypothetical membrane protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: ATPase AAA efflux protein, MATE family; MATE efflux family protein complement(2304763..2306112) Treponema succinifaciens DSM 2489 10432284 YP_004366320.1 CDS Tresu_2154 NC_015385.1 2306158 2306814 R COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834; KEGG: cts:Ctha_1646 haloacid dehalogenase domain-containing protein hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; haloacid dehalogenase domain-containing protein hydrolase complement(2306158..2306814) Treponema succinifaciens DSM 2489 10432285 YP_004366321.1 CDS Tresu_2155 NC_015385.1 2306829 2308121 R COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: tde:TDE2722 carbhohydrate kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; SPTR: Carhohydrate kinase, FGGY family; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; Carbohydrate kinase, FGGY complement(2306829..2308121) Treponema succinifaciens DSM 2489 10432286 YP_004366322.1 CDS Tresu_2156 NC_015385.1 2308153 2309406 R COGs: COG0462 phosphoribosylpyrophosphate synthetase; InterPro IPR005946:IPR000836; KEGG: tde:TDE2723 phosphoribosylpyrophosphate synthetase; PFAM: phosphoribosyltransferase; PRIAM: ribose-phosphate diphosphokinase; SPTR: phosphoribosylpyrophosphate synthetase; TIGRFAM: phosphoribosyl pyrophosphokinase; PFAM: phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase; ribose-phosphate pyrophosphokinase complement(2308153..2309406) Treponema succinifaciens DSM 2489 10432287 YP_004366323.1 CDS Tresu_2157 NC_015385.1 2310060 2310914 D KEGG: ssm:Spirs_1955 cell wall/surface repeat protein; SPTR: Cell wall/surface repeat protein; PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); hypothetical protein 2310060..2310914 Treponema succinifaciens DSM 2489 10432288 YP_004366324.1 CDS Tresu_2158 NC_015385.1 2311105 2312211 D COGs: COG3392 adenine-specific DNA methylase; InterPro IPR012327; KEGG: tde:TDE0706 adenine-specific DNA modification methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: adenine-specific DNA modification methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; adenine-specific DNA-methyltransferase 2311105..2312211 Treponema succinifaciens DSM 2489 10432289 YP_004366325.1 CDS Tresu_2159 NC_015385.1 2312213 2313565 D COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: shi:Shel_18080 ATPase AAA efflux protein, MATE family; PFAM: Multi antimicrobial extrusion protein; SPTR: Putative uncharacterized protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: ATPase AAA efflux protein, MATE family; MATE efflux family protein 2312213..2313565 Treponema succinifaciens DSM 2489 10432290 YP_004366326.1 CDS Tresu_2160 NC_015385.1 2313625 2314647 R COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR005786:IPR001544; KEGG: eel:EUBELI_01912 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase II; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II; branched-chain amino acid aminotransferase complement(2313625..2314647) Treponema succinifaciens DSM 2489 10432291 YP_004366327.1 CDS Tresu_2161 NC_015385.1 2314858 2316438 D KEGG: coc:Coch_1917 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2314858..2316438 Treponema succinifaciens DSM 2489 10432292 YP_004366328.1 CDS Tresu_2162 NC_015385.1 2316533 2317255 R KEGG: bpb:bpr_I0885 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2316533..2317255) Treponema succinifaciens DSM 2489 10432293 YP_004366329.1 CDS Tresu_2163 NC_015385.1 2317724 2318755 D COGs: COG0280 phosphotransacetylase; InterPro IPR004614:IPR002505; KEGG: thx:Thet_1168 phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; PRIAM: Phosphate acetyltransferase; SPTR: Phosphate acetyltransferase; TIGRFAM: Phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase; phosphate acetyltransferase 2317724..2318755 Treponema succinifaciens DSM 2489 10432295 YP_004366330.1 CDS Tresu_2164 NC_015385.1 2318802 2319281 R COGs: COG2426 membrane protein; InterPro IPR009577; KEGG: ere:EUBREC_1391 hypothetical protein; PFAM: Putative small multi-drug export; SPTR: Putative small multidrug export related protein; PFAM: Putative small multi-drug export protein; small multi-drug export protein complement(2318802..2319281) Treponema succinifaciens DSM 2489 10432296 YP_004366331.1 CDS Tresu_2165 NC_015385.1 2319339 2319971 R KEGG: eel:EUBELI_00743 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2319339..2319971) Treponema succinifaciens DSM 2489 10432297 YP_004366332.1 CDS Tresu_2166 NC_015385.1 2320013 2321629 R COGs: COG1384 Lysyl-tRNA synthetase (class I); HAMAP: Lysyl-tRNA synthetase, class I, archaeal-type; InterPro IPR002904:IPR020754:IPR020756; KEGG: tde:TDE2553 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class Ic; PRIAM: Lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class I; PFAM: tRNA synthetases class I (K); TIGRFAM: lysyl-tRNA synthetase, archaeal and spirochete; Lysyl-tRNA synthetase complement(2320013..2321629) Treponema succinifaciens DSM 2489 10432298 YP_004366333.1 CDS Tresu_2167 NC_015385.1 2321855 2323615 D COGs: COG1109 phosphomannomutase; InterPro IPR005844; KEGG: tde:TDE0864 phosphohexose mutase family protein; PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; SPTR: phosphohexose mutase family protein; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 2321855..2323615 Treponema succinifaciens DSM 2489 10432299 YP_004366334.1 CDS Tresu_2168 NC_015385.1 2323619 2324458 R COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR000150:IPR006379:IPR013200; KEGG: ssm:Spirs_0338 Cof-like hydrolase; PFAM: HAD superfamily hydrolase-like, type 3; SPTR: Hydrolase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB; cof family hydrolase complement(2323619..2324458) Treponema succinifaciens DSM 2489 10432300 YP_004366335.1 CDS Tresu_2169 NC_015385.1 2324536 2326287 R KEGG: fsu:Fisuc_1057 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Archaeal ATPase; hypothetical protein complement(2324536..2326287) Treponema succinifaciens DSM 2489 10432301 YP_004366336.1 CDS Tresu_2170 NC_015385.1 2326466 2327158 D hypothetical protein 2326466..2327158 Treponema succinifaciens DSM 2489 10432302 YP_004366337.1 CDS Tresu_2171 NC_015385.1 2327219 2327338 D hypothetical protein 2327219..2327338 Treponema succinifaciens DSM 2489 10432303 YP_004366338.1 CDS Tresu_2172 NC_015385.1 2327411 2329150 R COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR022374:IPR003439; KEGG: gsu:GSU1644 ATPase AAA ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; TIGRFAM: ABC transporter ATP-binding protein, ChvD; PFAM: ABC transporter; TIGRFAM: ATP-binding cassette protein, ChvD family; ChvD family ATP-binding protein complement(2327411..2329150) Treponema succinifaciens DSM 2489 10432304 YP_004366339.1 CDS Tresu_2173 NC_015385.1 2329304 2330080 R hypothetical protein complement(2329304..2330080) Treponema succinifaciens DSM 2489 10432305 YP_004366340.1 CDS Tresu_2174 NC_015385.1 2330491 2331282 R hypothetical protein complement(2330491..2331282) Treponema succinifaciens DSM 2489 10432306 YP_004366341.1 CDS Tresu_2175 NC_015385.1 2331301 2331921 R SPTR: Putative uncharacterized protein; PFAM: CRISPR-associated protein (cas_TM1812); hypothetical protein complement(2331301..2331921) Treponema succinifaciens DSM 2489 10432307 YP_004366342.1 CDS Tresu_2176 NC_015385.1 2332355 2333485 R COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein complement(2332355..2333485) Treponema succinifaciens DSM 2489 10432308 YP_004366343.1 CDS Tresu_2177 NC_015385.1 2335544 2335777 D manually curated; hypothetical protein 2335544..2335777 Treponema succinifaciens DSM 2489 10432309 YP_004366344.1 CDS Tresu_2178 NC_015385.1 2335772 2336065 R InterPro IPR021127; KEGG: cyj:Cyan7822_6171 CRISPR-associated protein Cas2; SPTR: CRISPR-associated protein Cas2; TIGRFAM: CRISPR associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2; CRISPR-associated protein Cas2 complement(2335772..2336065) Treponema succinifaciens DSM 2489 10432310 YP_004366345.1 CDS Tresu_2179 NC_015385.1 2336073 2336348 R COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR021127; KEGG: cph:Cpha266_2060 CRISPR-associated Cas2 family protein; SPTR: CRISPR-associated protein Cas2; TIGRFAM: CRISPR associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2; CRISPR-associated protein Cas2 complement(2336073..2336348) Treponema succinifaciens DSM 2489 10432311 YP_004366346.1 CDS Tresu_2180 NC_015385.1 2336345 2337445 R COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729; KEGG: sat:SYN_02241 hypothetical protein; PFAM: CRISPR-associated protein Cas1; SPTR: Uncharacterized protein predicted to be involved in DNA repair; TIGRFAM: CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1; CRISPR-associated protein Cas1 complement(2336345..2337445) Treponema succinifaciens DSM 2489 10432312 YP_004366347.1 CDS Tresu_2181 NC_015385.1 2337469 2337684 R KEGG: cbf:CLI_A0018 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2337469..2337684) Treponema succinifaciens DSM 2489 10432313 YP_004366348.1 CDS Tresu_2182 NC_015385.1 2337681 2338172 R KEGG: cbt:CLH_2380 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2337681..2338172) Treponema succinifaciens DSM 2489 10432314 YP_004366349.1 CDS Tresu_2183 NC_015385.1 2338172 2338390 R KEGG: cbt:CLH_2381 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2338172..2338390) Treponema succinifaciens DSM 2489 10432315 YP_004366350.1 CDS Tresu_2184 NC_015385.1 2338494 2338883 R KEGG: mfs:MFS40622_0579 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2338494..2338883) Treponema succinifaciens DSM 2489 10432316 YP_004366351.1 CDS Tresu_2185 NC_015385.1 2338895 2340016 R KEGG: tye:THEYE_A0066 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1887); hypothetical protein complement(2338895..2340016) Treponema succinifaciens DSM 2489 10432317 YP_004366352.1 CDS Tresu_2186 NC_015385.1 2340029 2341501 R COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: mbu:Mbur_0507 divergent ATPase AAA; PFAM: ATPase, AAA-4; SPTR: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen; PFAM: Divergent AAA domain; transcriptional regulator complement(2340029..2341501) Treponema succinifaciens DSM 2489 10432318 YP_004366353.1 CDS Tresu_2187 NC_015385.1 2341522 2342601 R COGs: COG1332 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR010173:IPR005537; KEGG: cni:Calni_1609 CRISPR-associated RAMP protein, csm5 family; PFAM: protein of unknown function DUF324; SPTR: CRISPR-associated protein, Csm5 family; TIGRFAM: CRISPR-associated protein, TM1807; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm5; Csm5 family CRISPR-associated RAMP protein complement(2341522..2342601) Treponema succinifaciens DSM 2489 10432319 YP_004366354.1 CDS Tresu_2188 NC_015385.1 2342598 2343479 R COGs: COG1567 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); KEGG: msu:MS1648 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm4; hypothetical protein complement(2342598..2343479) Treponema succinifaciens DSM 2489 10432320 YP_004366355.1 CDS Tresu_2189 NC_015385.1 2343493 2344161 R COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR013412:IPR005537; KEGG: mth:MTH1080 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: CRISPR-associated ramp protein; TIGRFAM: CRISPR-associated RAMP Csm3; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm3; Csm3 family CRISPR-associated RAMP protein complement(2343493..2344161) Treponema succinifaciens DSM 2489 10432321 YP_004366356.1 CDS Tresu_2190 NC_015385.1 2344180 2344698 R InterPro IPR010149; KEGG: tye:THEYE_A0634 CRISPR-associated protein, Csm2 family; PFAM: CRISPR-associated protein, TM1810 C-terminal; SPTR: CRISPR-associated protein, Csm2 family; TIGRFAM: CRISPR-associated protein, TM1810 C-terminal; PFAM: protein of unknown function (DUF310); TIGRFAM: CRISPR type III-A/MTUBE-associated protein Csm2; CRISPR-associated protein TM1810 domain-containing protein complement(2344180..2344698) Treponema succinifaciens DSM 2489 10432322 YP_004366357.1 CDS Tresu_2191 NC_015385.1 2344791 2347163 R COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR013408; KEGG: tye:THEYE_A0633 CRISPR-associated protein, Csm1 family; SPTR: CRISPR-associated protein, Csm1 family; TIGRFAM: CRISPR-associated protein Csm1; PFAM: HD domain; TIGRFAM: CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE; Csm1 family CRISPR-associated protein complement(2344791..2347163) Treponema succinifaciens DSM 2489 10432323 YP_004366358.1 CDS Tresu_2192 NC_015385.1 2347174 2348088 R KEGG: cni:Calni_1615 CRISPR-associated protein cas6; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2276); CRISPR-associated protein cas6 complement(2347174..2348088) Treponema succinifaciens DSM 2489 10432324 YP_004366359.1 CDS Tresu_2193 NC_015385.1 2348291 2350471 R COGs: COG1874 beta-galactosidase; InterPro IPR001944; KEGG: bpb:bpr_I2006 beta-galactosidase Bga35B; PFAM: glycoside hydrolase, family 35; SPTR: beta-galactosidase; PFAM: glycosyl hydrolases family 35; glycoside hydrolase family protein complement(2348291..2350471) Treponema succinifaciens DSM 2489 10432325 YP_004366360.1 CDS Tresu_2194 NC_015385.1 2350790 2352328 D hypothetical protein 2350790..2352328 Treponema succinifaciens DSM 2489 10432326 YP_004366361.1 CDS Tresu_2195 NC_015385.1 2353293 2354135 R COGs: COG3833 ABC-type maltose transport systems permease component; InterPro IPR000515; KEGG: xce:Xcel_2154 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease complement(2353293..2354135) Treponema succinifaciens DSM 2489 10432327 YP_004366362.1 CDS Tresu_2196 NC_015385.1 2354132 2355454 R COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: xce:Xcel_2153 fructose-bisphosphate aldolase; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease complement(2354132..2355454) Treponema succinifaciens DSM 2489 10432328 YP_004366363.1 CDS Tresu_2197 NC_015385.1 2355607 2356806 R COGs: COG2182 Maltose-binding periplasmic protein/domains; InterPro IPR006059; KEGG: xce:Xcel_2152 extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding protein; extracellular solute-binding protein complement(2355607..2356806) Treponema succinifaciens DSM 2489 10432329 YP_004366364.1 CDS Tresu_2198 NC_015385.1 2356857 2357855 R COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: bpb:bpr_I2007 LacI family transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family; LacI family transcriptional regulator complement(2356857..2357855) Treponema succinifaciens DSM 2489 10432330 YP_004366365.1 CDS Tresu_2199 NC_015385.1 2358097 2358756 D COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: aco:Amico_1665 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG/KHG aldolase; PRIAM: 2-dehydro-3-deoxy-phosphogluconate aldolase; SPTR: Entner-Doudoroff aldolase; TIGRFAM: KDPG/KHG aldolase; PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 2358097..2358756 Treponema succinifaciens DSM 2489 10432331 YP_004366366.1 CDS Tresu_2200 NC_015385.1 2358830 2360185 R COGs: COG0334 glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006096:IPR006097; KEGG: apv:Apar_0610 glutamate dehydrogenase; PFAM: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; PRIAM: glutamate dehydrogenase (NADP(+)); SMART: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; SPTR: glutamate dehydrogenase, NADP-specific; PFAM: glutamate/Leucine/phenylalanine/valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; glutamate dehydrogenase complement(2358830..2360185) Treponema succinifaciens DSM 2489 10432332 YP_004366367.1 CDS Tresu_2201 NC_015385.1 2360361 2360852 D KEGG: amt:Amet_1379 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2360361..2360852 Treponema succinifaciens DSM 2489 10432333 YP_004366368.1 CDS Tresu_2202 NC_015385.1 2360922 2362637 D COGs: COG1966 Carbon starvation protein predicted membrane protein; InterPro IPR003706; KEGG: bpb:bpr_I1010 carbon starvation protein CstA1; PFAM: Carbon starvation protein CstA; SPTR: Putative uncharacterized protein; PFAM: Carbon starvation protein CstA; carbon starvation protein CstA 2360922..2362637 Treponema succinifaciens DSM 2489 10432334 YP_004366369.1 CDS Tresu_2203 NC_015385.1 2362855 2364012 R KEGG: ssm:Spirs_0019 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2362855..2364012) Treponema succinifaciens DSM 2489 10432335 YP_004366370.1 CDS Tresu_2204 NC_015385.1 2364154 2365578 R COGs: COG0205 6-phosphofructokinase; InterPro IPR000023; KEGG: tpp:TPASS_0108 diphosphate--fructose-6-phosphate 1-phosphotransferase; PFAM: phosphofructokinase domain; PRIAM: 6-phosphofructokinase; SPTR: phosphofructokinase; PFAM: phosphofructokinase; 6-phosphofructokinase complement(2364154..2365578) Treponema succinifaciens DSM 2489 10432336 YP_004366371.1 CDS Tresu_2205 NC_015385.1 2365721 2366302 D COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: tde:TDE0955 LemA family protein; PFAM: LemA; SPTR: LemA protein; PFAM: LemA family; LemA family protein 2365721..2366302 Treponema succinifaciens DSM 2489 10432337 YP_004366372.1 CDS Tresu_2206 NC_015385.1 2366318 2367115 D COGs: COG1512 beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: tde:TDE0956 hypothetical protein; PFAM: protein of unknown function DUF477; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF477); hypothetical protein 2366318..2367115 Treponema succinifaciens DSM 2489 10432338 YP_004366373.1 CDS Tresu_2207 NC_015385.1 2367266 2368456 R COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; HAMAP: Signal transduction response regulator, chemotaxis, CheB; InterPro IPR001789:IPR000673:IPR008248; KEGG: tde:TDE0648 protein-glutamate methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Chemotaxis response regulator protein-glutamate methylesterase; PFAM: CheB methylesterase; Response regulator receiver domain; chemotaxis protein CheB complement(2367266..2368456) Treponema succinifaciens DSM 2489 10432339 YP_004366374.1 CDS Tresu_2208 NC_015385.1 2368486 2369307 R COGs: COG1352 methylase of chemotaxis methyl-accepting protein; InterPro IPR022641:IPR022642:IPR000780; KEGG: tde:TDE0647 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; PRIAM: protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; SPTR: CheR methyltransferase, SAM binding domain; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; CheR-type MCP methyltransferase complement(2368486..2369307) Treponema succinifaciens DSM 2489 10432340 YP_004366375.1 CDS Tresu_2209 NC_015385.1 2369433 2370434 R COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR018392:IPR016047:IPR002482; KEGG: tde:TDE2318 LysM/M23/M37 peptidase; PFAM: peptidase M23; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup; SPTR: LysM domain/M23/M37 peptidase domain protein; PFAM: peptidase family M23; LysM domain; peptidase M23 complement(2369433..2370434) Treponema succinifaciens DSM 2489 10432341 YP_004366376.1 CDS Tresu_2210 NC_015385.1 2370443 2371105 R COGs: COG0293 23S rRNA methylase; HAMAP: ribosomal RNA large subunit methyltransferase E; InterPro IPR002877:IPR015507; KEGG: tde:TDE1968 cell division protein FtsJ; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; SPTR: ribosomal RNA large subunit methyltransferase E; PFAM: FtsJ-like methyltransferase; TIGRFAM: cell division protein FtsJ; ribosomal RNA large subunit methyltransferase E complement(2370443..2371105) Treponema succinifaciens DSM 2489 10432342 YP_004366377.1 CDS Tresu_2211 NC_015385.1 2371241 2373178 D COGs: COG1022 long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: tde:TDE1742 AMP-binding enzyme family protein; PFAM: AMP-dependent synthetase/ligase; PRIAM: long-chain-fatty-acid--CoA ligase., o-succinylbenzoate--CoA ligase; SPTR: AMP-binding enzyme family protein; PFAM: AMP-binding enzyme; long-chain-fatty-acid--CoA ligase., o-succinylbenzoate--CoA ligase 2371241..2373178 Treponema succinifaciens DSM 2489 10432343 YP_004366378.1 CDS Tresu_2212 NC_015385.1 2373175 2374536 R InterPro IPR015324; KEGG: tde:TDE0081 hypothetical protein; PFAM: ribosomal protein Rsm22, bacterial-type; SPTR: Putative uncharacterized protein; PFAM: Mitochondrial small ribosomal subunit Rsm22; ribosomal small subunit Rsm22 complement(2373175..2374536) Treponema succinifaciens DSM 2489 10432344 YP_004366379.1 CDS Tresu_2213 NC_015385.1 2374536 2374871 R InterPro IPR000551; KEGG: tde:TDE0082 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2374536..2374871) Treponema succinifaciens DSM 2489 10432345 YP_004366380.1 CDS Tresu_2214 NC_015385.1 2374871 2376424 R COGs: COG1160 GTPase; HAMAP: GTP-binding, EngA; InterPro IPR002917:IPR016484:IPR005225; KEGG: tde:TDE0083 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain; GTP-binding protein engA complement(2374871..2376424) Treponema succinifaciens DSM 2489 10432346 YP_004366381.1 CDS Tresu_2215 NC_015385.1 2376440 2378149 R COGs: COG1080 phosphoenolpyruvate-protein kinase (PTS system EI component); InterPro IPR008731:IPR008279:IPR000121:IPR006318; KEGG: ssm:Spirs_3210 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain; PRIAM: phosphoenolpyruvate--protein phosphotransferase; SPTR: phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(2376440..2378149) Treponema succinifaciens DSM 2489 10432347 YP_004366382.1 CDS Tresu_2216 NC_015385.1 2378275 2380245 D COGs: COG2199 FOG: GGDEF domain; InterPro IPR001761:IPR000160; KEGG: dth:DICTH_1641 response regulator; PFAM: Diguanylate cyclase, predicted; Periplasmic binding protein/LacI transcriptional regulator; SMART: Diguanylate cyclase, predicted; SPTR: Response regulator; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; family; TIGRFAM: diguanylate cyclase (GGDEF) domain; diguanylate cyclase 2378275..2380245 Treponema succinifaciens DSM 2489 10432348 YP_004366383.1 CDS Tresu_2217 NC_015385.1 2380242 2380736 D hypothetical protein 2380242..2380736 Treponema succinifaciens DSM 2489 10432349 YP_004366384.1 CDS Tresu_2218 NC_015385.1 2380923 2381690 D InterPro IPR008258; KEGG: ssm:Spirs_0274 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Lytic transglycosylase catalytic; PFAM: Transglycosylase SLT domain; Lytic transglycosylase catalytic 2380923..2381690 Treponema succinifaciens DSM 2489 10432350 YP_004366385.1 CDS Tresu_2219 NC_015385.1 2381687 2382535 R COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143:IPR004408; KEGG: tde:TDE0041 BirA bifunctional protein; PFAM: Biotin/lipoate A/B protein ligase; SPTR: BirA bifunctional protein; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; biotin-(acetyl-CoA carboxylase) ligase complement(2381687..2382535) Treponema succinifaciens DSM 2489 10432351 YP_004366386.1 CDS Tresu_2220 NC_015385.1 2382535 2383179 R InterPro IPR002187; KEGG: aoe:Clos_0657 hypothetical protein; SMART: Nitrogen regulatory protein PII; SPTR: Regulatory protein, P-II family; PFAM: Nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(2382535..2383179) Treponema succinifaciens DSM 2489 10432352 YP_004366387.1 CDS Tresu_2221 NC_015385.1 2383176 2384696 R InterPro IPR011435; KEGG: aoe:Clos_0656 hypothetical protein; PFAM: protein of unknown function DUF1538; SPTR: Putative membrane protein; PFAM: protein of unknown function (DUF1538); hypothetical protein complement(2383176..2384696) Treponema succinifaciens DSM 2489 10432353 YP_004366388.1 CDS Tresu_2222 NC_015385.1 2384984 2385469 R COGs: COG1854 LuxS protein involved in autoinducer AI2 synthesis; HAMAP: S-ribosylhomocysteinase (LuxS); InterPro IPR003815; KEGG: ttj:TTHA1551 S-ribosylhomocysteinase; PFAM: S-ribosylhomocysteinase (LuxS); PRIAM: S-ribosylhomocysteine lyase; SPTR: S-ribosylhomocysteine lyase; PFAM: S-ribosylhomocysteinase (LuxS); quorum-sensing autoinducer 2 (AI-2), LuxS complement(2384984..2385469) Treponema succinifaciens DSM 2489 10432354 YP_004366389.1 CDS Tresu_2223 NC_015385.1 2385493 2386146 R COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: csh:Closa_2198 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: phosphoglycolate phosphatase; PFAM: haloacid dehalogenase-like hydrolase; haloacid dehalogenase domain-containing protein hydrolase complement(2385493..2386146) Treponema succinifaciens DSM 2489 10432355 YP_004366390.1 CDS Tresu_2224 NC_015385.1 2386146 2387504 R COGs: COG1362 aspartyl aminopeptidase; InterPro IPR001948; KEGG: eel:EUBELI_01164 aminopeptidase; PFAM: peptidase M18; SPTR: M18 family aminopeptidase; manually curated; PFAM: Aminopeptidase I zinc metalloprotease (M18); peptidase M18 aminopeptidase I complement(2386146..2387504) Treponema succinifaciens DSM 2489 10432356 YP_004366391.1 CDS Tresu_2225 NC_015385.1 2387621 2388241 D COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: sta:STHERM_c18970 transcriptional regulatory protein; PFAM: Transcription factor CarD; SPTR: Transcriptional regulatory protein; PFAM: CarD-like/TRCF domain; carD family transcriptional regulator 2387621..2388241 Treponema succinifaciens DSM 2489 10432357 YP_004366392.1 CDS Tresu_2226 NC_015385.1 2388234 2389415 D COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; InterPro IPR001228:IPR003526; KEGG: tpp:TPASS_0512 hypothetical protein; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: Bifunctional enzyme IspD/ispF; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: YgbB family; Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2388234..2389415 Treponema succinifaciens DSM 2489 10432358 YP_004366393.1 CDS Tresu_2227 NC_015385.1 2389466 2389738 D InterPro IPR007337; KEGG: clo:HMPREF0868_1610 ATPase AAA toxin-antitoxin system antitoxin component ribbon-helix-helix domain-containing protein; PFAM: RelB antitoxin; SPTR: Toxin-antitoxin system protein; TIGRFAM: RelB antitoxin; PFAM: RelB antitoxin; TIGRFAM: addiction module antitoxin, RelB/DinJ family; RelB/DinJ family addiction module antitoxin 2389466..2389738 Treponema succinifaciens DSM 2489 10432359 YP_004366394.1 CDS Tresu_2228 NC_015385.1 2389735 2390034 D COGs: COG3041 conserved hypothetical protein; InterPro IPR007712:IPR012753; KEGG: tde:TDE0505 hypothetical protein; PFAM: Plasmid stabilisation system; SPTR: RelE/StbE family addiction module toxin; TIGRFAM: Addiction module toxin, RelE/StbE; TIGRFAM: addiction module toxin component, YafQ family; addiction module toxin, RelE/StbE family; RelE/StbE family addiction module toxin 2389735..2390034 Treponema succinifaciens DSM 2489 10432360 YP_004366395.1 CDS Tresu_2229 NC_015385.1 2390087 2390416 R InterPro IPR001387; KEGG: tde:TDE0440 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; manually curated; PFAM: Helix-turn-helix; hypothetical protein complement(2390087..2390416) Treponema succinifaciens DSM 2489 10432361 YP_004366396.1 CDS Tresu_2230 NC_015385.1 2390564 2391049 D hypothetical protein 2390564..2391049 Treponema succinifaciens DSM 2489 10432362 YP_004366397.1 CDS Tresu_2231 NC_015385.1 2391132 2391482 D hypothetical protein 2391132..2391482 Treponema succinifaciens DSM 2489 10432363 YP_004366398.1 CDS Tresu_2232 NC_015385.1 2391537 2392043 D hypothetical protein 2391537..2392043 Treponema succinifaciens DSM 2489 10432364 YP_004366399.1 CDS Tresu_2233 NC_015385.1 2392062 2392739 D KEGG: vcj:VCD_000855 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2392062..2392739 Treponema succinifaciens DSM 2489 10432365 YP_004366400.1 CDS Tresu_2234 NC_015385.1 2392782 2393351 D hypothetical protein 2392782..2393351 Treponema succinifaciens DSM 2489 10432366 YP_004366401.1 CDS Tresu_2235 NC_015385.1 2393393 2394076 D hypothetical protein 2393393..2394076 Treponema succinifaciens DSM 2489 10432367 YP_004366402.1 CDS Tresu_2236 NC_015385.1 2394152 2395399 D hypothetical protein 2394152..2395399 Treponema succinifaciens DSM 2489 10432368 YP_004366403.1 CDS Tresu_2237 NC_015385.1 2395799 2396134 D InterPro IPR001387; KEGG: ate:Athe_1027 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix; hypothetical protein 2395799..2396134 Treponema succinifaciens DSM 2489 10432369 YP_004366404.1 CDS Tresu_2238 NC_015385.1 2396135 2396842 D InterPro IPR010359; KEGG: cce:Ccel_3077 protein of unknown function DUF955; PFAM: protein of unknown function DUF955; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF955); hypothetical protein 2396135..2396842 Treponema succinifaciens DSM 2489 10432370 YP_004366405.1 CDS Tresu_2239 NC_015385.1 2397105 2397872 D KEGG: tde:TDE2734 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2397105..2397872 Treponema succinifaciens DSM 2489 10432371 YP_004366406.1 CDS Tresu_2240 NC_015385.1 2397938 2398261 R InterPro IPR001387; KEGG: pjd:Pjdr2_4489 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator; PFAM: Helix-turn-helix; hypothetical protein complement(2397938..2398261) Treponema succinifaciens DSM 2489 10432372 YP_004366407.1 CDS Tresu_2241 NC_015385.1 2398414 2398620 D hypothetical protein 2398414..2398620 Treponema succinifaciens DSM 2489 10432373 YP_004366408.1 CDS Tresu_2242 NC_015385.1 2398622 2399062 D hypothetical protein 2398622..2399062 Treponema succinifaciens DSM 2489 10432374 YP_004366409.1 CDS Tresu_2243 NC_015385.1 2399093 2399479 D hypothetical protein 2399093..2399479 Treponema succinifaciens DSM 2489 10432375 YP_004366410.1 CDS Tresu_2244 NC_015385.1 2399481 2399981 D hypothetical protein 2399481..2399981 Treponema succinifaciens DSM 2489 10432376 YP_004366411.1 CDS Tresu_2245 NC_015385.1 2400014 2400805 D COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: bha:BH0900 transcriptional regulator (enhancement of xylanase A production); PFAM: Sulphatase-modifying factor; SPTR: XylR (Modular protein); PFAM: Formylglycine-generating sulfatase enzyme; sulfatase-modifying factor protein 2400014..2400805 Treponema succinifaciens DSM 2489 10432377 YP_004366412.1 CDS Tresu_2246 NC_015385.1 2400940 2401404 D COGs: COG2746 Aminoglycoside N3'-acetyltransferase; InterPro IPR003679; KEGG: llc:LACR_D33 aminoglycoside N3'-acetyltransferase; PFAM: Aminoglycoside 3-N-acetyltransferase; SPTR: Aminoglycoside N3'-acetyltransferase; PFAM: Aminoglycoside 3-N-acetyltransferase; aminoglycoside 3-N-acetyltransferase 2400940..2401404 Treponema succinifaciens DSM 2489 10432378 YP_004366413.1 CDS Tresu_2247 NC_015385.1 2401648 2402076 R COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: cyh:Cyan8802_4589 PilT protein domain protein; PFAM: PilT protein, N-terminal; SPTR: PilT-like protein; PFAM: PIN domain; PilT protein domain-containing protein complement(2401648..2402076) Treponema succinifaciens DSM 2489 10432379 YP_004366414.1 CDS Tresu_2248 NC_015385.1 2402067 2402378 R InterPro IPR006442; TIGRFAM: Prevent-host-death protein; PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein; prevent-host-death family protein complement(2402067..2402378) Treponema succinifaciens DSM 2489 10432380 YP_004366415.1 CDS Tresu_2249 NC_015385.1 2402880 2403404 R SPTR: Putative uncharacterized protein; PFAM: GIY-YIG catalytic domain; hypothetical protein complement(2402880..2403404) Treponema succinifaciens DSM 2489 10432381 YP_004366416.1 CDS Tresu_2250 NC_015385.1 2403422 2403745 R hypothetical protein complement(2403422..2403745) Treponema succinifaciens DSM 2489 10432382 YP_004366417.1 CDS Tresu_2251 NC_015385.1 2403769 2403894 R hypothetical protein complement(2403769..2403894) Treponema succinifaciens DSM 2489 10432383 YP_004366418.1 CDS Tresu_2252 NC_015385.1 2404120 2404626 R hypothetical protein complement(2404120..2404626) Treponema succinifaciens DSM 2489 10432384 YP_004366419.1 CDS Tresu_2254 NC_015385.1 2406460 2407083 D KEGG: mmq:MmarC5_1571 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2406460..2407083 Treponema succinifaciens DSM 2489 10432386 YP_004366420.1 CDS Tresu_2257 NC_015385.1 2408462 2408827 R KEGG: mgm:Mmc1_3049 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2408462..2408827) Treponema succinifaciens DSM 2489 10432389 YP_004366421.1 CDS Tresu_2260 NC_015385.1 2409880 2410689 D KEGG: cpy:Cphy_3204 GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 2409880..2410689 Treponema succinifaciens DSM 2489 10432392 YP_004366422.1 CDS Tresu_2261 NC_015385.1 2410931 2411587 D InterPro IPR001647; KEGG: sab:SAB2540c ica operon transcription regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator 2410931..2411587 Treponema succinifaciens DSM 2489 10432393 YP_004366423.1 CDS Tresu_2262 NC_015385.1 2411616 2412473 D COGs: COG4905 membrane protein; InterPro IPR010540; KEGG: cce:Ccel_0197 protein of unknown function DUF1113; PFAM: protein of unknown function DUF1113, TMEM229; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF1113); hypothetical protein 2411616..2412473 Treponema succinifaciens DSM 2489 10432394 YP_004366424.1 CDS Tresu_2263 NC_015385.1 2412731 2413852 D COGs: COG1932 phosphoserine aminotransferase; HAMAP: phosphoserine aminotransferase; InterPro IPR000192:IPR022278:IPR003248; KEGG: cbe:Cbei_0075 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: phosphoserine transaminase; SPTR: phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase, subgroup; PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase; phosphoserine aminotransferase 2412731..2413852 Treponema succinifaciens DSM 2489 10432395 YP_004366425.1 CDS Tresu_2264 NC_015385.1 2413868 2415046 D COGs: COG0111 phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140:IPR002912; KEGG: sta:STHERM_c01490 hypothetical protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Amino acid-binding ACT; PRIAM: phosphoglycerate dehydrogenase; SPTR: Putative uncharacterized protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase 2413868..2415046 Treponema succinifaciens DSM 2489 10432396 YP_004366426.1 CDS Tresu_2265 NC_015385.1 2415234 2415545 D COGs: COG1937 conserved hypothetical protein; InterPro IPR003735; KEGG: ere:EUBREC_0613 hypothetical protein; PFAM: protein of unknown function DUF156; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised BCR, COG1937; hypothetical protein 2415234..2415545 Treponema succinifaciens DSM 2489 10432397 YP_004366427.1 CDS Tresu_2266 NC_015385.1 2415566 2415928 D KEGG: eel:EUBELI_01465 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Heavy-metal-associated domain; hypothetical protein 2415566..2415928 Treponema succinifaciens DSM 2489 10432398 YP_004366428.1 CDS Tresu_2267 NC_015385.1 2415980 2418499 D COGs: COG2217 Cation transport ATPase; InterProIPR006121:IPR008250:IPR005834:IPR006403:IPR 006416:IPR001757:IPR006122; KEGG: eel:EUBELI_01464 Cu2+-exporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-(Or silver)-translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; Copper ion-binding; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase 2415980..2418499 Treponema succinifaciens DSM 2489 10432399 YP_004366429.1 CDS Tresu_2268 NC_015385.1 2418619 2421495 D COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: gau:GAU_0129 hypothetical protein; PFAM: peptidase M16, C-terminal; peptidase M16, N-terminal; SPTR: peptidase M16 domain protein; PFAM: peptidase M16 inactive domain; Insulinase (peptidase family M16); peptidase M16 domain-containing protein 2418619..2421495 Treponema succinifaciens DSM 2489 10432400 YP_004366430.1 CDS Tresu_2269 NC_015385.1 2421407 2422990 R COGs: COG0514 Superfamily II DNA helicase; InterPro IPR011545:IPR001650:IPR004589:IPR014001; KEGG: tde:TDE0435 ATP-dependent DNA helicase RecQ; PFAM: Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: ATP-dependent DNA helicase, RecQ family; TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; RecQ familyATP-dependent DNA helicase complement(2421407..2422990) Treponema succinifaciens DSM 2489 10432401 YP_004366431.1 CDS Tresu_2270 NC_015385.1 2423128 2425218 R COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153:IPR002178; KEGG: ssm:Spirs_3913 sodium/hydrogen exchanger; PFAM: Cation/H+ exchanger; phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; SPTR: Sodium/hydrogen exchanger; PFAM: Sodium/hydrogen exchanger family; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; TIGRFAM: PTS system, fructose subfamily, IIA component; sodium/hydrogen exchanger complement(2423128..2425218) Treponema succinifaciens DSM 2489 10432402 YP_004366432.1 CDS Tresu_2271 NC_015385.1 2425320 2426084 R COGs: COG2230 Cyclopropane fatty acid synthase and related methyltransferase; InterPro IPR013217; KEGG: tde:TDE2499 hypothetical protein; PFAM: methyltransferase type 12; SPTR: Putative uncharacterized protein; PFAM: ubiE/COQ5 methyltransferase family; methyltransferase type 12 complement(2425320..2426084) Treponema succinifaciens DSM 2489 10432403 YP_004366433.1 CDS Tresu_2272 NC_015385.1 2426133 2427122 D COGs: COG1493 serine kinase of the HPr protein regulates carbohydrate metabolism; HAMAP: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase; InterPro IPR011126:IPR011104:IPR003755; KEGG: tpa:TP0591 HPr kinase/phosphorylase; PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, N-terminal; SPTR: HPr kinase/phosphorylase; TIGRFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase; PFAM: HPr serine kinase N terminus; HPr serine kinase C-terminal domain; TIGRFAM: Hpr(Ser) kinase/phosphatase; HPr kinase 2426133..2427122 Treponema succinifaciens DSM 2489 10432404 YP_004366434.1 CDS Tresu_2273 NC_015385.1 2427155 2427421 D COGs: COG1925 phosphotransferase system HPr-related protein; InterPro IPR005698; KEGG: sta:STHERM_c21970 phosphocarrier protein HPr; PFAM: phosphotransferase system, phosphocarrier HPr protein; SPTR: phosphocarrier protein HPr; TIGRFAM: phosphotransferase system, phosphocarrier HPr protein; PFAM: PTS HPr component phosphorylation site; TIGRFAM: phosphotransferase System HPr (HPr) Family; phosphotransferase system, phosphocarrier protein HPr 2427155..2427421 Treponema succinifaciens DSM 2489 10432405 YP_004366435.1 CDS Tresu_2274 NC_015385.1 2427425 2428039 D COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); HAMAP: peptidase S24, LexA repressor; InterPro IPR006199:IPR019759:IPR006200; KEGG: ssm:Spirs_4055 transcriptional repressor, LexA family; PFAM: LexA, DNA-binding domain; peptidase S24/S26A/S26B, conserved region; SPTR: LexA repressor; TIGRFAM: peptidase S24, LexA repressor; PFAM: LexA DNA binding domain; peptidase S24-like; TIGRFAM: SOS regulatory protein LexA; SOS-response transcriptional repressor, LexA 2427425..2428039 Treponema succinifaciens DSM 2489 10432406 YP_004366436.1 CDS Tresu_2275 NC_015385.1 2428041 2429057 D COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372:IPR005790; KEGG: tde:TDE0729 hypothetical protein; PFAM: DNA polymerase III, delta; SPTR: Putative uncharacterized protein; TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III subunit delta; DNA polymerase III subunit delta 2428041..2429057 Treponema succinifaciens DSM 2489 10432407 YP_004366437.1 CDS Tresu_2276 NC_015385.1 2429129 2429722 R COGs: COG0522 ribosomal protein S4 and related protein; InterPro IPR001912:IPR002942:IPR005709; KEGG: vpr:Vpar_1453 ribosomal protein S4; PFAM: RNA-binding S4; ribosomal protein S4/S9, N-terminal; SMART: RNA-binding S4; SPTR: ribosomal protein S4; TIGRFAM: ribosomal protein S4, bacterial-type; PFAM: ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type; 30S ribosomal protein S4 complement(2429129..2429722) Treponema succinifaciens DSM 2489 10432408 YP_004366438.1 CDS Tresu_2277 NC_015385.1 2430101 2431003 D InterPro IPR009875; KEGG: tde:TDE0214 hypothetical protein; PFAM: Type IV pilus assembly PilZ; SPTR: Putative uncharacterized protein; PFAM: PilZ domain; type IV pilus assembly PilZ 2430101..2431003 Treponema succinifaciens DSM 2489 10432409 YP_004366439.1 CDS Tresu_2278 NC_015385.1 2431021 2432175 D InterPro IPR001440:IPR013105:IPR019734; KEGG: tde:TDE0213 TPR domain-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR domain protein; PFAM: Coatomer epsilon subunit; hypothetical protein 2431021..2432175 Treponema succinifaciens DSM 2489 10432410 YP_004366440.1 CDS Tresu_2279 NC_015385.1 2432182 2432634 R COGs: COG1430 conserved hypothetical protein; InterPro IPR003795; KEGG: coc:Coch_1289 protein of unknown function DUF192; PFAM: protein of unknown function DUF192; SPTR: lipoprotein; PFAM: Uncharacterized ACR, COG1430; hypothetical protein complement(2432182..2432634) Treponema succinifaciens DSM 2489 10432411 YP_004366441.1 CDS Tresu_2280 NC_015385.1 2432638 2433183 R KEGG: tde:TDE0066 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2432638..2433183) Treponema succinifaciens DSM 2489 10432412 YP_004366442.1 CDS Tresu_2281 NC_015385.1 2433173 2434366 R COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: tde:TDE0067 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; Crp/Fnr family transcriptional regulator complement(2433173..2434366) Treponema succinifaciens DSM 2489 10432413 YP_004366443.1 CDS Tresu_2282 NC_015385.1 2434381 2435340 R COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro IPR006094:IPR011601:IPR003170; KEGG: tde:TDE0093 UDP-N-acetylenolpyruvoylglucosamine reductase, ATPase AAA; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; UDP-N-acetylenolpyruvoylglucosamine reductase complement(2434381..2435340) Treponema succinifaciens DSM 2489 10432414 YP_004366444.1 CDS Tresu_2283 NC_015385.1 2435433 2436965 D COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803; KEGG: tde:TDE0092 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (C) catalytic domain; TIGRFAM: cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase 2435433..2436965 Treponema succinifaciens DSM 2489 10432415 YP_004366445.1 CDS Tresu_2284 NC_015385.1 2437002 2437556 D COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: tde:TDE0091 RNA polymerase sigma-24 factor, ATPase AAA; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; ECF subfamily RNA polymerase sigma-24 subunit 2437002..2437556 Treponema succinifaciens DSM 2489 10432416 YP_004366446.1 CDS Tresu_2285 NC_015385.1 2437540 2438256 D KEGG: tde:TDE0090 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2437540..2438256 Treponema succinifaciens DSM 2489 10432417 YP_004366447.1 CDS Tresu_2286 NC_015385.1 2438258 2439967 D COGs: COG1305 Transglutaminase-like protein; InterPro IPR002909:IPR002931; KEGG: tde:TDE0089 transglutaminase-like domain-containing protein; PFAM: Transglutaminase-like; Cell surface receptor IPT/TIG; SMART: Transglutaminase-like; SPTR: Transglutaminase-like domain protein; PFAM: Transglutaminase-like superfamily; IPT/TIG domain; transglutaminase domain-containing protein 2438258..2439967 Treponema succinifaciens DSM 2489 10432418 YP_004366448.1 CDS Tresu_2287 NC_015385.1 2439987 2440718 D COGs: COG0528 Uridylate kinase; InterPro IPR001048:IPR011818; KEGG: tde:TDE2085 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: Amino acid kinase family protein; TIGRFAM: Uridylate kinase, archaeal/spirochete, ATPase AAA; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase, ATPase AAA; uridylate kinase 2439987..2440718 Treponema succinifaciens DSM 2489 10432419 YP_004366449.1 CDS Tresu_2288 NC_015385.1 2440721 2441299 D KEGG: tde:TDE0488 ATPase AAA lipoprotein; SPTR: lipoprotein, ATPase AAA; PFAM: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; lipoprotein 2440721..2441299 Treponema succinifaciens DSM 2489 10432420 YP_004366450.1 CDS Tresu_2289 NC_015385.1 2441374 2442726 D COGs: COG0151 phosphoribosylamine-glycine ligase; HAMAP: phosphoribosylglycinamide synthetase; InterPro IPR020562:IPR020561:IPR020560:IPR000115; KEGG: cac:CA_C1396 phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain; PRIAM: phosphoribosylamine--glycine ligase; SPTR: phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylglycinamide synthetase; PFAM: phosphoribosylglycinamide synthetase, N domain; phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; phosphoribosylamine--glycine ligase 2441374..2442726 Treponema succinifaciens DSM 2489 10432421 YP_004366451.1 CDS Tresu_2290 NC_015385.1 2442852 2443685 R COGs: COG1968 Uncharacterized bacitracin resistance protein; HAMAP: Bacitracin resistance protein BacA; InterPro IPR003824; KEGG: tde:TDE0172 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA; SPTR: Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP; UDP-diphosphatase complement(2442852..2443685) Treponema succinifaciens DSM 2489 10432422 YP_004366452.1 CDS Tresu_2291 NC_015385.1 2443824 2445275 D COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148:IPR006037; KEGG: tde:TDE0087 potassium transporter peripheral membrane component; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: Potassium transporter peripheral membrane component; PFAM: TrkA-N domain; TrkA-C domain; TrkA-N domain-containing protein 2443824..2445275 Treponema succinifaciens DSM 2489 10432423 YP_004366453.1 CDS Tresu_2292 NC_015385.1 2445285 2446727 D COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: tde:TDE0088 trk system potassium uptake protein TrkH; PFAM: Cation transporter; SPTR: Trk system potassium uptake protein TrkH; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family; cation transporter 2445285..2446727 Treponema succinifaciens DSM 2489 10432424 YP_004366454.1 CDS Tresu_2293 NC_015385.1 2446978 2448474 R COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: kol:Kole_1368 carboxyl transferase; PFAM: Carboxyl transferase; PRIAM: propionyl-CoA carboxylase; SPTR: Carboxyl transferase; PFAM: Carboxyl transferase domain; propionyl-CoA carboxylase complement(2446978..2448474) Treponema succinifaciens DSM 2489 10432426 YP_004366455.1 CDS Tresu_2294 NC_015385.1 2448606 2450228 R hypothetical protein complement(2448606..2450228) Treponema succinifaciens DSM 2489 10432427 YP_004366456.1 CDS Tresu_2295 NC_015385.1 2450225 2451229 R COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107:IPR010200; KEGG: ssm:Spirs_2891 HflC protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: HflC protein; TIGRFAM: HflC; PFAM: SPFH domain / Band 7 family; TIGRFAM: HflC protein; HflC protein complement(2450225..2451229) Treponema succinifaciens DSM 2489 10432428 YP_004366457.1 CDS Tresu_2296 NC_015385.1 2451213 2452190 R COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107:IPR010201; KEGG: tde:TDE1332 HflK protein, ATPase AAA; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: HflK protein, ATPase AAA; TIGRFAM: HflK; PFAM: SPFH domain / Band 7 family; TIGRFAM: HflK protein; HflK protein complement(2451213..2452190) Treponema succinifaciens DSM 2489 10432429 YP_004366458.1 CDS Tresu_2297 NC_015385.1 2452725 2454071 D hypothetical protein 2452725..2454071 Treponema succinifaciens DSM 2489 10432430 YP_004366459.1 CDS Tresu_2299 NC_015385.1 2454655 2454960 D COGs: COG3636 transcriptional regulator protein; InterPro IPR001387:IPR014057; KEGG: pph:Ppha_0898 ATPase AAA transcriptional regulator; PFAM: Helix-turn-helix type 3; SPTR: Putative transcriptional regulator; TIGRFAM: Addiction module antidote protein, HI1420; PFAM: Helix-turn-helix; TIGRFAM: probable addiction module antidote protein; addiction module antidote protein 2454655..2454960 Treponema succinifaciens DSM 2489 10432432 YP_004366460.1 CDS Tresu_2300 NC_015385.1 2455073 2456299 R hypothetical protein complement(2455073..2456299) Treponema succinifaciens DSM 2489 10432433 YP_004366461.1 CDS Tresu_2301 NC_015385.1 2456482 2457318 R InterPro IPR010106; KEGG: afn:Acfer_1259 tetracycline resistance leader peptide; SPTR: Tetracycline resistance leader peptide; TIGRFAM: Conserved hypothetical protein CHP01784; TIGRFAM: conserved hypothetical protein (ATPase AAA transposase or invertase); hypothetical protein complement(2456482..2457318) Treponema succinifaciens DSM 2489 10432434 YP_004366462.1 CDS Tresu_2302 NC_015385.1 2457379 2458194 R COGs: COG0717 deoxycytidine deaminase; KEGG: afn:Acfer_0591 deoxycytidine deaminase-like protein; SPTR: Putative uncharacterized protein; PFAM: dUTPase; deoxycytidine deaminase-like protein complement(2457379..2458194) Treponema succinifaciens DSM 2489 10432435 YP_004366463.1 CDS Tresu_2303 NC_015385.1 2458271 2459194 R COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: tde:TDE0113 tpl protein; PFAM: PSP1, C-terminal; SPTR: Tpl protein; PFAM: PSP1 C-terminal conserved region; PSP1 domain-containing protein complement(2458271..2459194) Treponema succinifaciens DSM 2489 10432436 YP_004366464.1 CDS Tresu_2304 NC_015385.1 2459223 2459765 R InterPro IPR005585; KEGG: ssm:Spirs_3188 protein of unknown function DUF327; PFAM: protein of unknown function DUF327; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF327); hypothetical protein complement(2459223..2459765) Treponema succinifaciens DSM 2489 10432437 YP_004366465.1 CDS Tresu_2305 NC_015385.1 2459767 2460183 R COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: tde:TDE0111 hypothetical protein; PFAM: protein of unknown function DUF583; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function, DUF583; hypothetical protein complement(2459767..2460183) Treponema succinifaciens DSM 2489 10432438 YP_004366466.1 CDS Tresu_2306 NC_015385.1 2460185 2461198 R COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: tde:TDE0110 M23/M37 peptidase domain-containing protein; PFAM: peptidase M23; SPTR: M23/M37 peptidase domain protein; PFAM: peptidase family M23; peptidase M23 complement(2460185..2461198) Treponema succinifaciens DSM 2489 10432439 YP_004366467.1 CDS Tresu_2307 NC_015385.1 2461469 2462254 D COGs: COG0084 Mg-dependent DNase; InterPro IPR001130:IPR015991; KEGG: tde:TDE2730 TatD family hydrolase; PFAM: deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; TIGRFAM: deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family; TatD family hydrolase 2461469..2462254 Treponema succinifaciens DSM 2489 10432440 YP_004366468.1 CDS Tresu_2308 NC_015385.1 2462251 2463261 D COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269:IPR004652; KEGG: tde:TDE2731 NifR3 family TIM-barrel protein; PFAM: tRNA-dihydrouridine synthase; SPTR: tRNA-dihydrouridine synthase; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: dihydrouridine synthase (Dus); TIGRFAM: ATPase AAA TIM-barrel protein, nifR3 family; nifR3 family TIM-barrel protein 2462251..2463261 Treponema succinifaciens DSM 2489 10432441 YP_004366469.1 CDS Tresu_2309 NC_015385.1 2463330 2464910 D KEGG: tde:TDE0126 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2463330..2464910 Treponema succinifaciens DSM 2489 10432442 YP_004366470.1 CDS Tresu_2310 NC_015385.1 2464912 2466069 D COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: tde:TDE0125 GGDEF domain-containing protein; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: GGDEF domain protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; diguanylate cyclase 2464912..2466069 Treponema succinifaciens DSM 2489 10432443 YP_004366471.1 CDS Tresu_2311 NC_015385.1 2466066 2466689 D COGs: COG0705 membrane protein; InterPro IPR022764; KEGG: tde:TDE0124 rhomboid family protein; PFAM: peptidase S54, rhomboid domain; SPTR: Rhomboid family protein; PFAM: Rhomboid family; peptidase S54, rhomboid domain-containing protein 2466066..2466689 Treponema succinifaciens DSM 2489 10432444 YP_004366472.1 CDS Tresu_2312 NC_015385.1 2466680 2467408 D KEGG: tde:TDE0123 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2466680..2467408 Treponema succinifaciens DSM 2489 10432445 YP_004366473.1 CDS Tresu_2313 NC_015385.1 2467432 2467866 D hypothetical protein 2467432..2467866 Treponema succinifaciens DSM 2489 10432446 YP_004366474.1 CDS Tresu_2314 NC_015385.1 2467957 2469528 D COGs: COG0016 phenylalanyl-tRNA synthetase alpha subunit; HAMAP: phenylalanyl-tRNA synthetase alpha chain 2, bacterial/archaeal; InterPro IPR002319:IPR022917:IPR004529; KEGG: tde:TDE0109 phenylalanyl-tRNA synthetase subunit alpha; PFAM: phenylalanyl-tRNA synthetase; SPTR: phenylalanyl-tRNA synthetase alpha chain; TIGRFAM: phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: tRNA synthetases class II core domain (F); TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; phenylalanyl-tRNA synthetase alpha chain 2467957..2469528 Treponema succinifaciens DSM 2489 10432447 YP_004366475.1 CDS Tresu_2315 NC_015385.1 2469583 2471652 D COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: tde:TDE2549 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; SPTR: methyl-accepting chemotaxis protein; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis sensory transducer 2469583..2471652 Treponema succinifaciens DSM 2489 10432448 YP_004366476.1 CDS Tresu_2316 NC_015385.1 2471649 2472998 R COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504:IPR003593; KEGG: tde:TDE2517 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA; DNA repair protein RadA complement(2471649..2472998) Treponema succinifaciens DSM 2489 10432449 YP_004366477.1 CDS Tresu_2317 NC_015385.1 2473065 2473727 D COGs: COG0558 Phosphatidylglycerophosphate synthase; InterPro IPR000462:IPR004570; KEGG: tde:TDE2572 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 2473065..2473727 Treponema succinifaciens DSM 2489 10432450 YP_004366478.1 CDS Tresu_2318 NC_015385.1 2473901 2474275 D hypothetical protein 2473901..2474275 Treponema succinifaciens DSM 2489 10432451 YP_004366479.1 CDS Tresu_2319 NC_015385.1 2474321 2475058 R KEGG: cce:Ccel_1149 methyltransferase type 11; SPTR: methyltransferase type 11; hypothetical protein complement(2474321..2475058) Treponema succinifaciens DSM 2489 10432452 YP_004366480.1 CDS Tresu_2320 NC_015385.1 2475145 2475684 D KEGG: sro:Sros_7679 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2475145..2475684 Treponema succinifaciens DSM 2489 10432453 YP_004366481.1 CDS Tresu_2321 NC_015385.1 2475730 2476566 R COGs: COG1351 alternative thymidylate synthase; HAMAP: thymidylate synthase ThyX; InterPro IPR003669; KEGG: sta:STHERM_c22080 hypothetical protein; PFAM: thymidylate synthase ThyX; SPTR: thymidylate synthase thyX; TIGRFAM: thymidylate synthase ThyX; PFAM: thymidylate synthase complementing protein; TIGRFAM: thymidylate synthase, flavin-dependent; thymidylate synthase thyX complement(2475730..2476566) Treponema succinifaciens DSM 2489 10432454 YP_004366482.1 CDS Tresu_2322 NC_015385.1 2476590 2478602 R KEGG: ssm:Spirs_4105 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2476590..2478602) Treponema succinifaciens DSM 2489 10432455 YP_004366483.1 CDS Tresu_2323 NC_015385.1 2478629 2479696 R KEGG: tde:TDE2551 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF2804); hypothetical protein complement(2478629..2479696) Treponema succinifaciens DSM 2489 10432456 YP_004366484.1 CDS Tresu_2324 NC_015385.1 2480026 2481267 R InterPro IPR002525:IPR003346; KEGG: clj:CLJU_c38530 transposase; PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; SPTR: Transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase; transposase IS116/IS110/IS902 family protein complement(2480026..2481267) Treponema succinifaciens DSM 2489 10432457 YP_004366485.1 CDS Tresu_2325 NC_015385.1 2481487 2481846 R InterPro IPR005357:IPR008651; KEGG: lde:LDBND_0258 toxin-antitoxin system, antitoxin component, HicB family; PFAM: Uncharacterised protein family UPF0150; Uncharacterised protein family HicB; SPTR: Putative uncharacterized protein; PFAM: HicB family; Uncharacterised protein family (UPF0150); hypothetical protein complement(2481487..2481846) Treponema succinifaciens DSM 2489 10432458 YP_004366486.1 CDS Tresu_2326 NC_015385.1 2481833 2482081 R KEGG: lbu:LBUL_0253 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2481833..2482081) Treponema succinifaciens DSM 2489 10432459 YP_004366487.1 CDS Tresu_2327 NC_015385.1 2482197 2483384 D PFAM: Porin subfamily; hypothetical protein 2482197..2483384 Treponema succinifaciens DSM 2489 10432460 YP_004366488.1 CDS Tresu_2328 NC_015385.1 2483666 2484940 R COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bln:Blon_0026 ATPase (AAA+ superfamily)-like protein; SPTR: Putative uncharacterized protein; ATPase (AAA+ superfamily)-like protein complement(2483666..2484940) Treponema succinifaciens DSM 2489 10432461 YP_004366489.1 CDS Tresu_2329 NC_015385.1 2485406 2486758 R hypothetical protein complement(2485406..2486758) Treponema succinifaciens DSM 2489 10432462 YP_004366490.1 CDS Tresu_2330 NC_015385.1 2487176 2488708 D COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR001279:IPR011108; KEGG: tde:TDE1444 metallo-beta-lactamase family protein; PFAM: RNA-metabolising metallo-beta-lactamase; beta-lactamase-like; SMART: beta-lactamase-like; SPTR: Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; beta-Casp domain; RNA-metabolising metallo-beta-lactamase 2487176..2488708 Treponema succinifaciens DSM 2489 10432463 YP_004366491.1 CDS Tresu_2331 NC_015385.1 2488714 2488926 D InterPro IPR007236; PFAM: SlyX; PFAM: SlyX; SlyX family protein 2488714..2488926 Treponema succinifaciens DSM 2489 10432464 YP_004366492.1 CDS Tresu_2332 NC_015385.1 2488984 2489841 R COGs: COG1272 membrane protein hemolysin III homolog; InterPro IPR004254; KEGG: tde:TDE2317 hemolysin III; PFAM: Hly-III-related; SPTR: Hemolysin III; PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family; Hly-III family protein complement(2488984..2489841) Treponema succinifaciens DSM 2489 10432465 YP_004366493.1 CDS Tresu_2333 NC_015385.1 2490029 2491279 R COGs: COG4214 ABC-type xylose transport system permease component; InterPro IPR001851; KEGG: csh:Closa_3806 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: Putative uncharacterized protein; PFAM: Branched-chain amino acid transport system / permease component; ABC transporter permease complement(2490029..2491279) Treponema succinifaciens DSM 2489 10432466 YP_004366494.1 CDS Tresu_2334 NC_015385.1 2491304 2492836 R COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: bpb:bpr_I1174 xylose ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: sugar ABC transporter ATPase; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: ABC transporter; sugar ABC transporter ATPase complement(2491304..2492836) Treponema succinifaciens DSM 2489 10432467 YP_004366495.1 CDS Tresu_2335 NC_015385.1 2492922 2493983 R COGs: COG4213 ABC-type xylose transport system periplasmic component; KEGG: cpy:Cphy_1585 ATPase AAA solute-binding component of ABC transporter; SPTR: Putative uncharacterized protein; ABC transporter substrate-binding protein complement(2492922..2493983) Treponema succinifaciens DSM 2489 10432468 YP_004366496.1 CDS Tresu_2336 NC_015385.1 2494326 2495615 R COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR020811:IPR020810:IPR000941; KEGG: ppn:Palpr_1047 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal; PRIAM: phosphopyruvate hydratase; SPTR: Enolase 2; TIGRFAM: Enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase; enolase complement(2494326..2495615) Treponema succinifaciens DSM 2489 10432469 YP_004366497.1 CDS Tresu_2337 NC_015385.1 2495797 2497089 D COGs: COG0436 aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: ssm:Spirs_1023 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II; class I and II aminotransferase 2495797..2497089 Treponema succinifaciens DSM 2489 10432470 YP_004366498.1 CDS Tresu_2338 NC_015385.1 2497073 2498338 D KEGG: tde:TDE2185 ATPase AAA lipoprotein; SPTR: lipoprotein, ATPase AAA; lipoprotein 2497073..2498338 Treponema succinifaciens DSM 2489 10432471 YP_004366499.1 CDS Tresu_2339 NC_015385.1 2498435 2498836 D KEGG: tde:TDE1987 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2498435..2498836 Treponema succinifaciens DSM 2489 10432472 YP_004366500.1 CDS Tresu_2340 NC_015385.1 2498840 2500195 R COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: pcu:pc0149 ATPase AAA arsenical pump membrane protein; PFAM: Divalent ion symporter; SPTR: Putative uncharacterized protein; PFAM: Citrate transporter; citrate transporter complement(2498840..2500195) Treponema succinifaciens DSM 2489 10432473 YP_004366501.1 CDS Tresu_2341 NC_015385.1 2500212 2502329 R COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR003339:IPR003593; KEGG: bll:BLJ_1432 fused ATP-binding protein and permease of ABC transporter; PFAM: ABC transporter-like; Cobalt transport protein; PRIAM: sugar ABC transporter ATPase; SMART: ATPase, AAA+ type, core; SPTR: Cobalt ABC transporter, ATP-binding protein; PFAM: ABC transporter; Cobalt transport protein; sugar ABC transporter ATPase complement(2500212..2502329) Treponema succinifaciens DSM 2489 10432474 YP_004366502.1 CDS Tresu_2342 NC_015385.1 2502332 2503006 R COGs: COG0622 phosphoesterase; InterPro IPR004843:IPR000979; KEGG: tde:TDE1578 phosphoesterase, ATPase AAA; PFAM: Metallo-dependent phosphatase; SPTR: phosphoesterase, ATPase AAA; TIGRFAM: phosphodiesterase MJ0936; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family; phosphodiesterase, MJ0936 family complement(2502332..2503006) Treponema succinifaciens DSM 2489 10432475 YP_004366503.1 CDS Tresu_2343 NC_015385.1 2503008 2503778 R hypothetical protein complement(2503008..2503778) Treponema succinifaciens DSM 2489 10432476 YP_004366504.1 CDS Tresu_2344 NC_015385.1 2503882 2504760 R KEGG: tde:TDE1324 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: FecR protein; hypothetical protein complement(2503882..2504760) Treponema succinifaciens DSM 2489 10432477 YP_004366505.1 CDS Tresu_2345 NC_015385.1 2504785 2505975 R KEGG: tde:TDE1327 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2504785..2505975) Treponema succinifaciens DSM 2489 10432478 YP_004366506.1 CDS Tresu_2346 NC_015385.1 2505977 2506447 R SPTR: Putative uncharacterized protein; hypothetical protein complement(2505977..2506447) Treponema succinifaciens DSM 2489 10432479 YP_004366507.1 CDS Tresu_2347 NC_015385.1 2506466 2509366 D COGs: COG2114 adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR007890:IPR001054; KEGG: tde:TDE0932 adenylate/guanylate cyclase catalytic domain-containing protein; PFAM: CHASE2; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: adenylate/guanylate cyclase catalytic domain protein; PFAM: adenylate and Guanylate cyclase catalytic domain; CHASE2 domain; adenylate/guanylate cyclase with Chase sensor 2506466..2509366 Treponema succinifaciens DSM 2489 10432480 YP_004366508.1 CDS Tresu_2348 NC_015385.1 2509512 2510342 R KEGG: cfa:487849 dentin sialophosphoprotein; SPTR: Vitellogenin 2a; hypothetical protein complement(2509512..2510342) Treponema succinifaciens DSM 2489 10432481 YP_004366509.1 CDS Tresu_2349 NC_015385.1 2510692 2512200 D COGs: COG2407 L-fucose isomerase and related protein; InterPro IPR015888; KEGG: cbe:Cbei_4681 L-fucose isomerase related protein; PFAM: L-fucose isomerase-like, C-terminal; SPTR: Putative uncharacterized protein; PFAM: L-fucose isomerase, C-terminal domain; L-fucose isomerase 2510692..2512200 Treponema succinifaciens DSM 2489 10432482 YP_004366510.1 CDS Tresu_2350 NC_015385.1 2512290 2513006 R COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: ssm:Spirs_3430 class II aldolase/adducin family protein; PFAM: Class II aldolase/adducin, N-terminal; PRIAM: L-ribulose-5-phosphate 4-epimerase; SPTR: Class II aldolase/adducin family protein; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; L-ribulose-5-phosphate 4-epimerase complement(2512290..2513006) Treponema succinifaciens DSM 2489 10432483 YP_004366511.1 CDS Tresu_2351 NC_015385.1 2513181 2514779 R COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: pru:PRU_0419 carbohydrate kinase domain-containing protein; PFAM: Carbohydrate kinase, FGGY, N-terminal; SPTR: Ribulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; Carbohydrate kinase, FGGY complement(2513181..2514779) Treponema succinifaciens DSM 2489 10432484 YP_004366512.1 CDS Tresu_2352 NC_015385.1 2515007 2515936 D COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: bpb:bpr_III244 sugar ABC transporter substrate-binding protein; SPTR: Sugar ABC transporter substrate-binding protein; PFAM: family; sugar ABC transporter substrate-binding protein 2515007..2515936 Treponema succinifaciens DSM 2489 10432485 YP_004366513.1 CDS Tresu_2353 NC_015385.1 2516062 2517576 D COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: bpb:bpr_III243 sugar ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: sugar ABC transporter ATPase; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: ABC transporter; sugar ABC transporter ATPase 2516062..2517576 Treponema succinifaciens DSM 2489 10432486 YP_004366514.1 CDS Tresu_2354 NC_015385.1 2517573 2518667 D COGs: COG1172 ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: bpb:bpr_III242 sugar ABC transporter permease; PFAM: ABC transporter permease; SPTR: Putative uncharacterized protein; PFAM: Branched-chain amino acid transport system / permease component; ABC transporter permease 2517573..2518667 Treponema succinifaciens DSM 2489 10432487 YP_004366515.1 CDS Tresu_2355 NC_015385.1 2518668 2519717 D COGs: COG1172 ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: bpb:bpr_III241 sugar ABC transporter permease; PFAM: ABC transporter permease; SPTR: Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-); PFAM: Branched-chain amino acid transport system / permease component; ABC transporter permease 2518668..2519717 Treponema succinifaciens DSM 2489 10432488 YP_004366516.1 CDS Tresu_2356 NC_015385.1 2519983 2520768 D COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: ccb:Clocel_0699 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC family transcriptional regulator 2519983..2520768 Treponema succinifaciens DSM 2489 10432489 YP_004366517.1 CDS Tresu_2357 NC_015385.1 2520839 2521699 R COGs: COG1344 flagellin and related hook-associated protein; InterPro IPR001029; KEGG: tde:TDE1004 flagellar filament core protein; PFAM: flagellin, D0/D1 domain; SPTR: flagellar filament 33 kDa core protein; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; flagellin domain-containing protein complement(2520839..2521699) Treponema succinifaciens DSM 2489 10432490 YP_004366518.1 CDS Tresu_2358 NC_015385.1 2521838 2522350 R KEGG: tde:TDE0199 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2521838..2522350) Treponema succinifaciens DSM 2489 10432491 YP_004366519.1 CDS Tresu_2359 NC_015385.1 2522377 2523315 D COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR013096:IPR000005:IPR018060; KEGG: cpy:Cphy_3156 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Transcriptional regulator, AraC family; PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family; AraC family transcriptional regulator 2522377..2523315 Treponema succinifaciens DSM 2489 10432492 YP_004366520.1 CDS Tresu_2360 NC_015385.1 2523309 2524499 D COGs: COG0452 phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382:IPR007085:IPR005252; KEGG: csh:Closa_2345 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein; PRIAM: phosphopantothenate--cysteine ligase; SPTR: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 2523309..2524499 Treponema succinifaciens DSM 2489 10432493 YP_004366521.1 CDS Tresu_2361 NC_015385.1 2524511 2525320 D COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: tde:TDE2295 mechanosensitive ion channel family protein; PFAM: Mechanosensitive ion channel MscS; SPTR: Mechanosensitive ion channel family protein; PFAM: Mechanosensitive ion channel; mechanosensitive ion channel MscS 2524511..2525320 Treponema succinifaciens DSM 2489 10432494 YP_004366522.1 CDS Tresu_2362 NC_015385.1 2525372 2525857 D hypothetical protein 2525372..2525857 Treponema succinifaciens DSM 2489 10432495 YP_004366523.1 CDS Tresu_2363 NC_015385.1 2525906 2527036 D KEGG: tde:TDE2070 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2525906..2527036 Treponema succinifaciens DSM 2489 10432496 YP_004366524.1 CDS Tresu_2364 NC_015385.1 2527033 2528577 R COGs: COG4166 ABC-type oligopeptide transport system periplasmic component; InterPro IPR000914; KEGG: tde:TDE2049 solute-binding family 5 protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Bacterial extracellular solute-binding proteins, family 5; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; ABC transporter substrate-binding protein complement(2527033..2528577) Treponema succinifaciens DSM 2489 10432497 YP_004366525.1 CDS Tresu_2365 NC_015385.1 2528596 2530002 R KEGG: tde:TDE2048 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2528596..2530002) Treponema succinifaciens DSM 2489 10432498 YP_004366526.1 CDS Tresu_2366 NC_015385.1 2530164 2531066 R InterPro IPR002123; KEGG: tde:TDE2222 hypothetical protein; SMART: phospholipid/glycerol acyltransferase; SPTR: Putative uncharacterized protein; PFAM: acyltransferase; phospholipid/glycerol acyltransferase complement(2530164..2531066) Treponema succinifaciens DSM 2489 10432499 YP_004366527.1 CDS Tresu_2367 NC_015385.1 2536515 2537237 R KEGG: tde:TDE1642 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2536515..2537237) Treponema succinifaciens DSM 2489 10432504 YP_004366528.1 CDS Tresu_2368 NC_015385.1 2537250 2537489 R COGs: COG4443 conserved hypothetical protein; InterPro IPR017154; KEGG: clj:CLJU_c06010 hypothetical protein; PFAM: Uncharacterised conserved protein UCP037246; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2128); hypothetical protein complement(2537250..2537489) Treponema succinifaciens DSM 2489 10432505 YP_004366529.1 CDS Tresu_2369 NC_015385.1 2537770 2538768 D KEGG: vcn:VOLCADRAFT_108795 hypothetical protein; SPTR: Predicted protein; hypothetical protein 2537770..2538768 Treponema succinifaciens DSM 2489 10432506 YP_004366530.1 CDS Tresu_2370 NC_015385.1 2538768 2539460 D KEGG: tpp:TPASS_0769 outer membrane protein; SPTR: Outer membrane protein; outer membrane protein 2538768..2539460 Treponema succinifaciens DSM 2489 10432507 YP_004366531.1 CDS Tresu_2371 NC_015385.1 2539457 2540047 R InterPro IPR000086; KEGG: tde:TDE0010 MutT/NUDIX family protein; PFAM: NUDIX hydrolase domain; SPTR: MutT/nudix family protein; PFAM: NUDIX domain; NUDIX hydrolase complement(2539457..2540047) Treponema succinifaciens DSM 2489 10432508 YP_004366532.1 CDS Tresu_2372 NC_015385.1 2540124 2540948 D KEGG: tde:TDE0009 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2540124..2540948 Treponema succinifaciens DSM 2489 10432509 YP_004366533.1 CDS Tresu_2373 NC_015385.1 2541079 2542920 R COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; InterPro IPR000583:IPR001347:IPR005855; KEGG: tit:Thit_1906 glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; Sugar isomerase (SIS); PRIAM: glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; PFAM: SIS domain; glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing); glucosamine--fructose-6-phosphate aminotransferase complement(2541079..2542920) Treponema succinifaciens DSM 2489 10432510 YP_004366534.1 CDS Tresu_2374 NC_015385.1 2543251 2544492 D hypothetical protein 2543251..2544492 Treponema succinifaciens DSM 2489 10432511 YP_004366535.1 CDS Tresu_2375 NC_015385.1 2544482 2545126 R COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265:IPR003651:IPR005759:IPR003583; KEGG: rpe:RPE_0488 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; Helix-hairpin-helix DNA-binding motif, class 1; Endonuclease III-like, iron-sulphur cluster loop motif; SPTR: DNA-(Apurinic or apyrimidinic site) lyase / endonuclease III; TIGRFAM: Endonuclease III/Nth; PFAM: HhH-GPD superfamily base excision DNA repair protein; Iron-sulfur binding domain of endonuclease III; Helix-hairpin-helix motif; TIGRFAM: endonuclease III; endonuclease III complement(2544482..2545126) Treponema succinifaciens DSM 2489 10432512 YP_004366536.1 CDS Tresu_2376 NC_015385.1 2545128 2546306 R COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; InterPro IPR022628:IPR022629:IPR022630:IPR002133; KEGG: tde:TDE2470 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; PRIAM: methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthase complement(2545128..2546306) Treponema succinifaciens DSM 2489 10432513 YP_004366537.1 CDS Tresu_2377 NC_015385.1 2546861 2547169 D InterPro IPR004193; KEGG: dol:Dole_0850 glycoside hydrolase family protein; PFAM: glycoside hydrolase, family 13, N-terminal; SPTR: glycoside hydrolase, family 13-like protein; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); glycoside hydrolase family protein 2546861..2547169 Treponema succinifaciens DSM 2489 10432514 YP_004366538.1 CDS Tresu_2378 NC_015385.1 2547315 2548295 D COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: pru:PRU_1473 aldo/keto reductase family oxidoreductase; PFAM: NADP-dependent oxidoreductase domain; SPTR: Oxidoreductase, aldo/keto reductase family; PFAM: Aldo/keto reductase family; NADP-dependent oxidoreductase domain-containing protein 2547315..2548295 Treponema succinifaciens DSM 2489 10432515 YP_004366539.1 CDS Tresu_2379 NC_015385.1 2548324 2548566 D hypothetical protein 2548324..2548566 Treponema succinifaciens DSM 2489 10432516 YP_004366540.1 CDS Tresu_2380 NC_015385.1 2548508 2549905 D hypothetical protein 2548508..2549905 Treponema succinifaciens DSM 2489 10432517 YP_004366541.1 CDS Tresu_2381 NC_015385.1 2550126 2551703 R COGs: COG1119 ABC-type molybdenum transport system ATPase component/photorepair protein PhrA; InterPro IPR003439:IPR003593; KEGG: gbm:Gbem_1570 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter; ABC transporter complement(2550126..2551703) Treponema succinifaciens DSM 2489 10432518 YP_004366542.1 CDS Tresu_2382 NC_015385.1 2551726 2552619 R COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: gbm:Gbem_2757 DNA-binding transcriptional regulator IlvY; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Helix-turn-helix transcriptional regulator, IlvY family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; LysR family transcriptional regulator complement(2551726..2552619) Treponema succinifaciens DSM 2489 10432519 YP_004366543.1 CDS Tresu_2383 NC_015385.1 2552698 2553522 D KEGG: ssm:Spirs_2694 hypothetical protein; SPTR: YD repeat protein; hypothetical protein 2552698..2553522 Treponema succinifaciens DSM 2489 10432520 YP_004366544.1 CDS Tresu_2384 NC_015385.1 2553655 2554785 R COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein complement(2553655..2554785) Treponema succinifaciens DSM 2489 10432521 YP_004366545.1 CDS Tresu_2385 NC_015385.1 2554935 2556023 D COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: tde:TDE1537 polyprenyl synthetase family protein; PFAM: polyprenyl synthetase; SPTR: polyprenyl synthetase family protein; PFAM: polyprenyl synthetase; polyprenyl synthetase 2554935..2556023 Treponema succinifaciens DSM 2489 10432522 YP_004366546.1 CDS Tresu_2386 NC_015385.1 2556016 2556540 D InterPro IPR001440:IPR013105:IPR019734; KEGG: tde:TDE1536 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; SPTR: TPR domain protein; PFAM: Tetratricopeptide repeat; hypothetical protein 2556016..2556540 Treponema succinifaciens DSM 2489 10432523 YP_004366547.1 CDS Tresu_2387 NC_015385.1 2556561 2556971 D PFAM: Positive regulator of sigma(E), RseC/MucC; hypothetical protein 2556561..2556971 Treponema succinifaciens DSM 2489 10432524 YP_004366548.1 CDS Tresu_2388 NC_015385.1 2556979 2557539 D InterPro IPR010664; KEGG: tde:TDE0646 hypothetical protein; PFAM: lipopolysccharide assembly, LptC-related; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF1239); hypothetical protein 2556979..2557539 Treponema succinifaciens DSM 2489 10432525 YP_004366549.1 CDS Tresu_2389 NC_015385.1 2557529 2558257 D InterPro IPR005653; KEGG: tde:TDE0645 hypothetical protein; PFAM: Organic solvent tolerance-like, N-terminal; SPTR: Putative uncharacterized protein; PFAM: OstA-like protein; OstA family protein 2557529..2558257 Treponema succinifaciens DSM 2489 10432526 YP_004366550.1 CDS Tresu_2390 NC_015385.1 2558241 2558987 D COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: tde:TDE0644 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter; sulfate-transporting ATPase 2558241..2558987 Treponema succinifaciens DSM 2489 10432527 YP_004366551.1 CDS Tresu_2392 NC_015385.1 2560944 2561546 R COGs: COG2344 AT-rich DNA-binding protein; HAMAP: Transcriptional repressor, redox-sensing, Rex; InterPro IPR003781:IPR022876; KEGG: ooe:OEOE_1398 redox-sensing transcriptional repressor REX; PFAM: CoA-binding; SPTR: Putative redox-sensing transcriptional repressor rex; PFAM: CoA binding domain; Putative DNA-binding protein N-terminus; redox-sensing transcriptional repressor rex complement(2560944..2561546) Treponema succinifaciens DSM 2489 10432534 YP_004366552.1 CDS Tresu_2393 NC_015385.1 2561615 2562616 D InterPro IPR005135; KEGG: ssm:Spirs_3694 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family; endonuclease/exonuclease/phosphatase 2561615..2562616 Treponema succinifaciens DSM 2489 10432535 YP_004366553.1 CDS Tresu_2394 NC_015385.1 2562613 2563782 R COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: bhy:BHWA1_01067 major facilitator superfamily MFS 1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily protein; PFAM: Major Facilitator Superfamily; major facilitator superfamily protein complement(2562613..2563782) Treponema succinifaciens DSM 2489 10432536 YP_004366554.1 CDS Tresu_2395 NC_015385.1 2563925 2566150 D InterPro IPR007197:IPR006638; KEGG: fjo:Fjoh_4972 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; Radical SAM domain protein 2563925..2566150 Treponema succinifaciens DSM 2489 10432537 YP_004366555.1 CDS Tresu_2396 NC_015385.1 2566173 2566949 R COGs: COG0566 rRNA methylase; InterPro IPR001537:IPR004441; KEGG: tde:TDE1443 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: SpoU rRNA methylase family; TIGRFAM: rRNA methylase, ATPase AAA, group 3; TrmH family RNA methyltransferase complement(2566173..2566949) Treponema succinifaciens DSM 2489 10432538 YP_004366556.1 CDS Tresu_2397 NC_015385.1 2567196 2567699 R COGs: COG3012 conserved hypothetical protein; InterPro IPR004027; KEGG: dal:Dalk_1685 sec-C motif domain protein; PFAM: SEC-C motif; SPTR: SEC-C domain protein; PFAM: SEC-C motif; SEC-C motif domain protein complement(2567196..2567699) Treponema succinifaciens DSM 2489 10432539 YP_004366557.1 CDS Tresu_2398 NC_015385.1 2567775 2569016 R COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: ccu:Ccur_02550 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: phenylacetate--CoA ligase; SPTR: Putative uncharacterized protein; PFAM: AMP-binding enzyme; phenylacetate--CoA ligase complement(2567775..2569016) Treponema succinifaciens DSM 2489 10432540 YP_004366558.1 CDS Tresu_2399 NC_015385.1 2569013 2569597 R COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: mvn:Mevan_1326 indolepyruvate oxidoreductase subunit B; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; PRIAM: indolepyruvate ferredoxin oxidoreductase; SPTR: Putative uncharacterized protein; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family; indolepyruvate ferredoxin oxidoreductase, beta subunit; indolepyruvate ferredoxin oxidoreductase complement(2569013..2569597) Treponema succinifaciens DSM 2489 10432541 YP_004366559.1 CDS Tresu_2400 NC_015385.1 2569609 2571435 R COGs: COG4231 indolepyruvate ferredoxin oxidoreductase alpha and beta subunits; InterPro IPR002880:IPR011766:IPR001450:IPR017721; KEGG: cce:Ccel_1389 indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; 4Fe-4S binding domain; PRIAM: indolepyruvate ferredoxin oxidoreductase; SPTR: indolepyruvate ferredoxin oxidoreductase, alpha subunit; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; indolepyruvate ferredoxin oxidoreductase subunit alpha complement(2569609..2571435) Treponema succinifaciens DSM 2489 10432542 YP_004366560.1 CDS Tresu_2401 NC_015385.1 2571573 2572004 R hypothetical protein complement(2571573..2572004) Treponema succinifaciens DSM 2489 10432543 YP_004366561.1 CDS Tresu_2402 NC_015385.1 2572213 2573883 D InterPro IPR018392:IPR002482; KEGG: ssm:Spirs_3826 peptidoglycan-binding lysin domain protein; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup; SPTR: peptidoglycan-binding lysin domain protein; PFAM: Hsp70 protein; LysM domain; peptidoglycan-binding lysin domain protein 2572213..2573883 Treponema succinifaciens DSM 2489 10432544 YP_004366562.1 CDS Tresu_2403 NC_015385.1 2573914 2575950 D COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: tpp:TPASS_0043 possible soluble lytic transglycosylase; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Soluble lytic transglycosylase, ATPase AAA; PFAM: Transglycosylase SLT domain; Lytic transglycosylase catalytic 2573914..2575950 Treponema succinifaciens DSM 2489 10432545 YP_004366563.1 CDS Tresu_2404 NC_015385.1 2576027 2577757 D COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153:IPR000644; KEGG: tde:TDE1412 sodium/hydrogen exchanger family protein; PFAM: Cation/H+ exchanger; Cystathionine beta-synthase, core; SPTR: Sodium/hydrogen exchanger family protein; PFAM: CBS domain; Sodium/hydrogen exchanger family; sodium/hydrogen exchanger 2576027..2577757 Treponema succinifaciens DSM 2489 10432546 YP_004366564.1 CDS Tresu_2405 NC_015385.1 2577832 2578068 D COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: ssm:Spirs_4302 nitrogen-fixing NifU domain protein; PFAM: NIF system FeS cluster assembly, NifU, C-terminal; SPTR: Nitrogen-fixing NifU domain protein; PFAM: NifU-like domain; nitrogen-fixing NifU domain-containing protein 2577832..2578068 Treponema succinifaciens DSM 2489 10432547 YP_004366565.1 CDS Tresu_2406 NC_015385.1 2578072 2578617 D COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: noc:Noc_1086 peptidylprolyl isomerase, FKBP-type; PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; PRIAM: peptidylprolyl isomerase; SPTR: peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl isomerase 2578072..2578617 Treponema succinifaciens DSM 2489 10432548 YP_004366566.1 CDS Tresu_2407 NC_015385.1 2578614 2579189 R COGs: COG0703 shikimate kinase; HAMAP: shikimate kinase; InterPro IPR000623; KEGG: sta:STHERM_c05910 shikimate kinase; PFAM: shikimate kinase; SPTR: shikimate kinase; PFAM: shikimate kinase; shikimate kinase complement(2578614..2579189) Treponema succinifaciens DSM 2489 10432549 YP_004366567.1 CDS Tresu_2408 NC_015385.1 2579193 2579915 R COGs: COG0313 methyltransferase; InterPro IPR000878; KEGG: bvu:BVU_1988 hypothetical protein; PFAM: Tetrapyrrole methylase; SPTR: Putative uncharacterized protein; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family; uroporphyrin-III C/tetrapyrrole methyltransferase complement(2579193..2579915) Treponema succinifaciens DSM 2489 10432550 YP_004366568.1 CDS Tresu_2409 NC_015385.1 2579922 2581109 R COGs: COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein); InterPro IPR002816:IPR005230; KEGG: tde:TDE0026 TraB family protein; PFAM: Pheromone shutdown-related, TraB; SPTR: TraB family protein; TIGRFAM: Pheromone shutdown, TraB; PFAM: TraB family; TIGRFAM: pheromone shutdown-related protein TraB; TraB family protein complement(2579922..2581109) Treponema succinifaciens DSM 2489 10432551 YP_004366569.1 CDS Tresu_2410 NC_015385.1 2581115 2582575 R InterPro IPR013105:IPR001440:IPR019734; KEGG: tde:TDE0993 ATPase AAA lipoprotein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SPTR: lipoprotein, ATPase AAA; PFAM: Tetratricopeptide repeat; hypothetical protein complement(2581115..2582575) Treponema succinifaciens DSM 2489 10432552 YP_004366570.1 CDS Tresu_2411 NC_015385.1 2582639 2584534 D KEGG: tde:TDE0994 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2582639..2584534 Treponema succinifaciens DSM 2489 10432553 YP_004366571.1 CDS Tresu_2412 NC_015385.1 2584681 2586111 D COGs: COG1626 Neutral trehalase; InterPro IPR001661; KEGG: tde:TDE0996 hypothetical protein; PFAM: glycoside hydrolase, family 37; SPTR: Trehalase; PFAM: Trehalase; glycoside hydrolase family protein 2584681..2586111 Treponema succinifaciens DSM 2489 10432554 YP_004366572.1 CDS Tresu_2413 NC_015385.1 2586236 2587774 D COGs: COG0248 Exopolyphosphatase; InterPro IPR003695:IPR006674; KEGG: sta:STHERM_c22140 hypothetical protein; PFAM: Ppx/GppA phosphatase; Metal-dependent phosphohydrolase, HD subdomain; SPTR: Putative uncharacterized protein; PFAM: HD domain; Ppx/GppA phosphatase family; Ppx/GppA phosphatase 2586236..2587774 Treponema succinifaciens DSM 2489 10432555 YP_004366573.1 CDS Tresu_2414 NC_015385.1 2587778 2589907 D COGs: COG0855 polyphosphate kinase; HAMAP: polyphosphate kinase; InterPro IPR003414; KEGG: hmo:HM1_0232 polyphosphate kinase; PFAM: polyphosphate kinase; PRIAM: polyphosphate kinase; SPTR: polyphosphate kinase; TIGRFAM: polyphosphate kinase; PFAM: polyphosphate kinase; TIGRFAM: polyphosphate kinase 1; polyphosphate kinase 2587778..2589907 Treponema succinifaciens DSM 2489 10432556 YP_004366574.1 CDS Tresu_2415 NC_015385.1 2590173 2590394 R COGs: COG0361 Translation initiation factor 1 (IF-1); HAMAP: Translation initiation factor IF-1; InterPro IPR006196:IPR004368:IPR022967; KEGG: tde:TDE2087 translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type; SMART: RNA-binding domain, S1; SPTR: Translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1; Translation initiation factor IF-1 complement(2590173..2590394) Treponema succinifaciens DSM 2489 10432557 YP_004366575.1 CDS Tresu_2416 NC_015385.1 2590517 2590873 D COGs: COG1734 DnaK suppressor protein; InterPro IPR000962; KEGG: tde:TDE2088 C4 zinc finger domain-containing protein; SPTR: C4 zinc finger domain protein, DksA/TraR family; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; RNA polymerase-binding protein DksA; TraR/DksA family transcriptional regulator 2590517..2590873 Treponema succinifaciens DSM 2489 10432558 YP_004366576.1 CDS Tresu_2417 NC_015385.1 2590870 2591712 R COGs: COG1387 histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR004013:IPR010140:IPR003141; KEGG: ccb:Clocel_3917 histidinol phosphate phosphatase HisJ family; PFAM: PHP, C-terminal; SMART: polymerase/histidinol phosphatase, N-terminal; SPTR: histidinol phosphate phosphatase HisJ family; TIGRFAM: histidinol phosphate phosphatase, HisJ; PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family; HisJ family histidinol phosphate phosphatase complement(2590870..2591712) Treponema succinifaciens DSM 2489 10432559 YP_004366577.1 CDS Tresu_2418 NC_015385.1 2591729 2592973 R COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: ssm:Spirs_4133 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain; response regulator receiver protein complement(2591729..2592973) Treponema succinifaciens DSM 2489 10432560 YP_004366578.1 CDS Tresu_2419 NC_015385.1 2593056 2593634 D COGs: COG0693 Putative intracellular protease/amidase; InterPro IPR002818:IPR006287; KEGG: sta:STHERM_c18300 hypothetical protein; PFAM: ThiJ/PfpI; SPTR: DJ-1 family protein; TIGRFAM: DJ-1; PFAM: DJ-1/PfpI family; TIGRFAM: DJ-1 family protein; DJ-1 family protein 2593056..2593634 Treponema succinifaciens DSM 2489 10432561 YP_004366579.1 CDS Tresu_2420 NC_015385.1 2593636 2594223 R InterPro IPR000792; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Sigma-70, region 4 family; PFAM: Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator complement(2593636..2594223) Treponema succinifaciens DSM 2489 10432562 YP_004366580.1 CDS Tresu_2421 NC_015385.1 2594239 2594418 R hypothetical protein complement(2594239..2594418) Treponema succinifaciens DSM 2489 10432563 YP_004366581.1 CDS Tresu_2422 NC_015385.1 2594435 2594980 R COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: cdl:CDR20291_2028 hypothetical protein; PFAM: Flavin reductase-like, FMN-binding; SPTR: Putative uncharacterized protein; PFAM: Flavin reductase like domain; flavin reductase domain-containing FMN-binding protein complement(2594435..2594980) Treponema succinifaciens DSM 2489 10432564 YP_004366582.1 CDS Tresu_2423 NC_015385.1 2595336 2595980 R COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644:IPR002912; KEGG: sta:STHERM_c19020 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; Amino acid-binding ACT; SMART: Cystathionine beta-synthase, core; SPTR: CBS domain containing protein; PFAM: CBS domain; hypothetical protein complement(2595336..2595980) Treponema succinifaciens DSM 2489 10432566 YP_004366583.1 CDS Tresu_2424 NC_015385.1 2595983 2596693 R COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: hmo:HM1_0494 branched-chain amino acid abc transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Branched-chain amino acid abc transporter, ATP-binding protein; PFAM: ABC transporter; Fe(3+)-transporting ATPase complement(2595983..2596693) Treponema succinifaciens DSM 2489 10432567 YP_004366584.1 CDS Tresu_2425 NC_015385.1 2596680 2597504 R COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: hmo:HM1_0493 branched chain amino acid abc transporter, ATPase AAA; PFAM: ABC transporter-like; PRIAM: sugar ABC transporter ATPase; SMART: ATPase, AAA+ type, core; SPTR: Amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; sugar ABC transporter ATPase complement(2596680..2597504) Treponema succinifaciens DSM 2489 10432568 YP_004366585.1 CDS Tresu_2426 NC_015385.1 2597501 2598517 R COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: sta:STHERM_c19050 transporter; PFAM: ABC transporter permease; SPTR: Transporter; PFAM: Branched-chain amino acid transport system / permease component; ABC transporter permease complement(2597501..2598517) Treponema succinifaciens DSM 2489 10432569 YP_004366586.1 CDS Tresu_2427 NC_015385.1 2598528 2599418 R COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: sta:STHERM_c19060 hypothetical protein; PFAM: ABC transporter permease; SPTR: Putative uncharacterized protein; PFAM: Branched-chain amino acid transport system / permease component; ABC transporter permease complement(2598528..2599418) Treponema succinifaciens DSM 2489 10432570 YP_004366587.1 CDS Tresu_2428 NC_015385.1 2599539 2600681 R COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: sta:STHERM_c19070 hypothetical protein; PFAM: Extracellular ligand-binding receptor; SPTR: Putative uncharacterized protein; PFAM: Receptor family ligand binding region; extracellular ligand-binding receptor complement(2599539..2600681) Treponema succinifaciens DSM 2489 10432571 YP_004366588.1 CDS Tresu_2429 NC_015385.1 2600851 2601099 R KEGG: tde:TDE0793 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2600851..2601099) Treponema succinifaciens DSM 2489 10432572 YP_004366589.1 CDS Tresu_2430 NC_015385.1 2601110 2601541 R COGs: COG0203 ribosomal protein L17; HAMAP: ribosomal protein L17; InterPro IPR000456; KEGG: tde:TDE0792 50S ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; TIGRFAM: ribosomal protein L17; 50S ribosomal protein L17 complement(2601110..2601541) Treponema succinifaciens DSM 2489 10432573 YP_004366590.1 CDS Tresu_2431 NC_015385.1 2601538 2602584 R COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterProIPR011261:IPR011262:IPR011260:IPR011773:IPR 011263; KEGG: ssm:Spirs_0980 DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase, alpha subunit, C-terminal; DNA-directed RNA polymerase, dimerisation; DNA-directed RNA polymerase, insert domain; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type; DNA-directed RNA polymerase subunit alpha complement(2601538..2602584) Treponema succinifaciens DSM 2489 10432574 YP_004366591.1 CDS Tresu_2432 NC_015385.1 2602678 2603061 R COGs: COG0100 ribosomal protein S11; InterPro IPR001971:IPR019981; KEGG: tde:TDE0790 30S ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: ribosomal protein S11, bacterial-type; PFAM: ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; 30S ribosomal protein S11 complement(2602678..2603061) Treponema succinifaciens DSM 2489 10432575 YP_004366592.1 CDS Tresu_2433 NC_015385.1 2603074 2603442 R COGs: COG0099 ribosomal protein S13; InterPro IPR001892:IPR019980; KEGG: tde:TDE0789 30S ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: ribosomal protein S13, bacterial-type; PFAM: ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; 30S ribosomal protein S13 complement(2603074..2603442) Treponema succinifaciens DSM 2489 10432576 YP_004366593.1 CDS Tresu_2434 NC_015385.1 2603453 2603566 R HAMAP: ribosomal protein L36; InterPro IPR000473; KEGG: tde:TDE0788 50S ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; manually curated; PFAM: ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; 50S ribosomal protein L36 complement(2603453..2603566) Treponema succinifaciens DSM 2489 10432577 YP_004366594.1 CDS Tresu_2435 NC_015385.1 2603723 2605057 R COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: tde:TDE0787 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase, SecY subunit; TIGRFAM: SecY protein; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit; preprotein translocase subunit SecY complement(2603723..2605057) Treponema succinifaciens DSM 2489 10432578 YP_004366595.1 CDS Tresu_2436 NC_015385.1 2605073 2605546 R COGs: COG0200 ribosomal protein L15; InterPro IPR005749; KEGG: tde:TDE0786 50S ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15, bacterial-type; PFAM: ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle; 50S ribosomal protein L15 complement(2605073..2605546) Treponema succinifaciens DSM 2489 10432579 YP_004366596.1 CDS Tresu_2437 NC_015385.1 2605546 2605728 R COGs: COG1841 ribosomal protein L30/L7E; InterPro IPR016082:IPR005996; KEGG: tjr:TherJR_0314 ribosomal protein L30; PFAM: ribosomal protein L30, ferredoxin-like fold domain; SPTR: 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30, bacterial-type; PFAM: ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle; 50S ribosomal protein L30 complement(2605546..2605728) Treponema succinifaciens DSM 2489 10432580 YP_004366597.1 CDS Tresu_2438 NC_015385.1 2605731 2606243 R COGs: COG0098 ribosomal protein S5; InterPro IPR013810:IPR005324:IPR005712; KEGG: tde:TDE0784 30S ribosomal protein S5; PFAM: ribosomal protein S5, N-terminal; ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5, bacterial-type; PFAM: ribosomal protein S5, N-terminal domain; ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type; 30S ribosomal protein S5 complement(2605731..2606243) Treponema succinifaciens DSM 2489 10432581 YP_004366598.1 CDS Tresu_2439 NC_015385.1 2606252 2606614 R COGs: COG0256 ribosomal protein L18; InterPro IPR005484:IPR004389; KEGG: tde:TDE0783 50S ribosomal protein L18; PFAM: ribosomal protein L18/L5; SPTR: 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18, bacterial; PFAM: ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type; 50S ribosomal protein L18 complement(2606252..2606614) Treponema succinifaciens DSM 2489 10432582 YP_004366599.1 CDS Tresu_2440 NC_015385.1 2606626 2607168 R COGs: COG0097 ribosomal protein L6P/L9E; InterPro IPR020040:IPR019906; KEGG: ssm:Spirs_0970 ribosomal protein L6; PFAM: ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial-type; PFAM: ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type; 50S ribosomal protein L6 complement(2606626..2607168) Treponema succinifaciens DSM 2489 10432583 YP_004366600.1 CDS Tresu_2441 NC_015385.1 2607181 2607582 R COGs: COG0096 ribosomal protein S8; InterPro IPR000630; KEGG: tpp:TPASS_0203 30S ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: 30S ribosomal protein S8; PFAM: ribosomal protein S8; 30S ribosomal protein S8 complement(2607181..2607582) Treponema succinifaciens DSM 2489 10432584 YP_004366601.1 CDS Tresu_2442 NC_015385.1 2607601 2607786 R COGs: COG0199 ribosomal protein S14; InterPro IPR001209; KEGG: ssm:Spirs_0968 ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: 30S ribosomal protein S14 type Z; manually curated; PFAM: ribosomal protein S14p/S29e; 30S ribosomal protein S14 complement(2607601..2607786) Treponema succinifaciens DSM 2489 10432585 YP_004366602.1 CDS Tresu_2443 NC_015385.1 2607798 2608349 R COGs: COG0094 ribosomal protein L5; InterPro IPR002132; KEGG: tde:TDE0779 50S ribosomal protein L5; PFAM: ribosomal protein L5; SPTR: 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; ribosomal protein L5; 50S ribosomal protein L5 complement(2607798..2608349) Treponema succinifaciens DSM 2489 10432586 YP_004366603.1 CDS Tresu_2444 NC_015385.1 2608349 2608672 R COGs: COG0198 ribosomal protein L24; InterPro IPR005824:IPR003256; KEGG: tde:TDE0778 50S ribosomal protein L24; PFAM: KOW; SMART: KOW; SPTR: 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle; 50S ribosomal protein L24 complement(2608349..2608672) Treponema succinifaciens DSM 2489 10432587 YP_004366604.1 CDS Tresu_2445 NC_015385.1 2608687 2609055 R COGs: COG0093 ribosomal protein L14; InterPro IPR000218:IPR005745; KEGG: tde:TDE0777 50S ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14, bacterial-type; PFAM: ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle; 50S ribosomal protein L14 complement(2608687..2609055) Treponema succinifaciens DSM 2489 10432588 YP_004366605.1 CDS Tresu_2446 NC_015385.1 2609071 2609343 R COGs: COG0186 ribosomal protein S17; InterPro IPR000266:IPR019984; KEGG: ssm:Spirs_0964 30S ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: ribosomal protein S17, bacterial-type; PFAM: ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; 30S ribosomal protein S17 complement(2609071..2609343) Treponema succinifaciens DSM 2489 10432589 YP_004366606.1 CDS Tresu_2447 NC_015385.1 2609354 2609596 R InterPro IPR001854; KEGG: tde:TDE0775 50S ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal L29 protein; TIGRFAM: ribosomal protein L29; 50S ribosomal protein L29 complement(2609354..2609596) Treponema succinifaciens DSM 2489 10432590 YP_004366607.1 CDS Tresu_2448 NC_015385.1 2609607 2610023 R COGs: COG0197 ribosomal protein L16/L10E; HAMAP: ribosomal protein L16; InterPro IPR016180:IPR000114; KEGG: tpp:TPASS_0196 50S ribosomal protein L16; PFAM: ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle; 50S ribosomal protein L16 complement(2609607..2610023) Treponema succinifaciens DSM 2489 10432591 YP_004366608.1 CDS Tresu_2449 NC_015385.1 2610016 2610768 R COGs: COG0092 ribosomal protein S3; InterProIPR008282:IPR004044:IPR001351:IPR005704:IPR 004087; KEGG: tde:TDE0773 30S ribosomal protein S3; PFAM: ribosomal protein S3, C-terminal; ribosomal protein S3, N-terminal; K Homology, type 2; SMART: K Homology; SPTR: 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3, bacterial; PFAM: KH domain; ribosomal protein S3, C-terminal domain; ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type; 30S ribosomal protein S3 complement(2610016..2610768) Treponema succinifaciens DSM 2489 10432592 YP_004366609.1 CDS Tresu_2450 NC_015385.1 2610770 2611126 R COGs: COG0091 ribosomal protein L22; InterPro IPR001063:IPR005727; KEGG: tde:TDE0772 50S ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22, bacterial-type; PFAM: ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type; 50S ribosomal protein L22 complement(2610770..2611126) Treponema succinifaciens DSM 2489 10432593 YP_004366610.1 CDS Tresu_2451 NC_015385.1 2611141 2611425 R COGs: COG0185 ribosomal protein S19; InterPro IPR002222:IPR005732; KEGG: ssm:Spirs_0959 ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial-type; PFAM: ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle; 30S ribosomal protein S19 complement(2611141..2611425) Treponema succinifaciens DSM 2489 10432594 YP_004366611.1 CDS Tresu_2452 NC_015385.1 2611440 2612264 R COGs: COG0090 ribosomal protein L2; InterPro IPR022666:IPR022669:IPR005880; KEGG: tde:TDE0770 50S ribosomal protein L2; PFAM: ribosomal protein L2, C-terminal; ribosomal proteins L2, RNA binding domain; SPTR: 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2, bacterial-type; PFAM: ribosomal proteins L2, RNA binding domain; ribosomal proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar; 50S ribosomal protein L2 complement(2611440..2612264) Treponema succinifaciens DSM 2489 10432595 YP_004366612.1 CDS Tresu_2453 NC_015385.1 2612294 2612578 R COGs: COG0089 ribosomal protein L23; InterPro IPR013025; KEGG: tde:TDE0769 50S ribosomal protein L23; PFAM: ribosomal protein L25/L23; SPTR: 50S ribosomal protein L23; PFAM: ribosomal protein L23; ribosomal protein L25/L23 complement(2612294..2612578) Treponema succinifaciens DSM 2489 10432596 YP_004366613.1 CDS Tresu_2454 NC_015385.1 2612578 2613216 R COGs: COG0088 ribosomal protein L4; InterPro IPR002136; KEGG: tde:TDE0768 50S ribosomal protein L4; PFAM: ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; PFAM: ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle; 50S ribosomal protein L4/L1e complement(2612578..2613216) Treponema succinifaciens DSM 2489 10432597 YP_004366614.1 CDS Tresu_2455 NC_015385.1 2613231 2613851 R COGs: COG0087 ribosomal protein L3; InterPro IPR000597:IPR019927; KEGG: tde:TDE0767 50S ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: ribosomal protein L3, bacterial/organelle-type; PFAM: ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial; 50S ribosomal protein L3 complement(2613231..2613851) Treponema succinifaciens DSM 2489 10432598 YP_004366615.1 CDS Tresu_2456 NC_015385.1 2613932 2614240 R COGs: COG0051 ribosomal protein S10; HAMAP: ribosomal protein S10 subgroup; InterPro IPR001848:IPR005731; KEGG: ssm:Spirs_0954 ribosomal protein S10; PFAM: ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10 subgroup; PFAM: ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle; 30S ribosomal protein S10 complement(2613932..2614240) Treponema succinifaciens DSM 2489 10432599 YP_004366616.1 CDS Tresu_2457 NC_015385.1 2614289 2615476 R COGs: COG0050 GTPase - translation elongation factors; InterProIPR000795:IPR004161:IPR004160:IPR004541:IPR 005225; KEGG: tde:TDE0765 elongation factor Tu; PFAM: protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; SPTR: Elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU; translation elongation factor Tu complement(2614289..2615476) Treponema succinifaciens DSM 2489 10432600 YP_004366617.1 CDS Tresu_2458 NC_015385.1 2616199 2616669 R COGs: COG0049 ribosomal protein S7; InterPro IPR000235:IPR005717; KEGG: tde:TDE1048 30S ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7, bacterial-type; PFAM: ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle; 30S ribosomal protein S7 complement(2616199..2616669) Treponema succinifaciens DSM 2489 10432601 YP_004366618.1 CDS Tresu_2459 NC_015385.1 2616685 2617059 R COGs: COG0048 ribosomal protein S12; InterPro IPR006032:IPR005679; KEGG: tde:TDE1047 30S ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacteria; PFAM: ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle; 30S ribosomal protein S12 complement(2616685..2617059) Treponema succinifaciens DSM 2489 10432602 YP_004366619.1 CDS Tresu_2460 NC_015385.1 2617208 2621692 R COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; InterProIPR007080:IPR000722:IPR007066:IPR007083:IPR 007081:IPR012754:IPR006592; KEGG: tpp:TPASS_0242 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; SMART: RNA polymerase, N-terminal; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form; DNA-directed RNA polymerase subunit beta' complement(2617208..2621692) Treponema succinifaciens DSM 2489 10432603 YP_004366620.1 CDS Tresu_2461 NC_015385.1 2621685 2625242 R COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243; KEGG: tde:TDE2421 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit; DNA-directed RNA polymerase subunit beta complement(2621685..2625242) Treponema succinifaciens DSM 2489 10432604 YP_004366621.1 CDS Tresu_2462 NC_015385.1 2625483 2625857 R COGs: COG0222 ribosomal protein L7/L12; HAMAP: ribosomal protein L7/L12; InterPro IPR013823:IPR000206; KEGG: tde:TDE2422 50S ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12, C-terminal; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12; 50S ribosomal protein L7/L12 complement(2625483..2625857) Treponema succinifaciens DSM 2489 10432605 YP_004366622.1 CDS Tresu_2463 NC_015385.1 2626027 2626623 R COGs: COG0244 ribosomal protein L10; HAMAP: ribosomal protein L10; InterPro IPR001790:IPR022973; KEGG: tde:TDE2423 50S ribosomal protein L10; PFAM: ribosomal protein L10/acidic P0; SPTR: 50S ribosomal protein L10; PFAM: ribosomal protein L10; 50S ribosomal protein L10 complement(2626027..2626623) Treponema succinifaciens DSM 2489 10432606 YP_004366623.1 CDS Tresu_2464 NC_015385.1 2626623 2627300 R COGs: COG0081 ribosomal protein L1; InterPro IPR002143:IPR005878; KEGG: tde:TDE2424 50S ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1, bacterial-type; PFAM: ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast; 50S ribosomal protein L1 complement(2626623..2627300) Treponema succinifaciens DSM 2489 10432607 YP_004366624.1 CDS Tresu_2465 NC_015385.1 2627300 2627734 R COGs: COG0080 ribosomal protein L11; InterPro IPR020784:IPR020783:IPR006519:IPR000911; KEGG: tde:TDE2425 50S ribosomal protein L11; PFAM: ribosomal protein L11, C-terminal domain; ribosomal protein L11, N-terminal domain; SMART: ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11, bacterial-type; PFAM: ribosomal protein L11, RNA binding domain; ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11; 50S ribosomal protein L11 complement(2627300..2627734) Treponema succinifaciens DSM 2489 10432608 YP_004366625.1 CDS Tresu_2466 NC_015385.1 2627928 2628485 R COGs: COG0250 Transcription antiterminator; InterPro IPR006645:IPR005824:IPR001062; KEGG: ssm:Spirs_0944 NusG antitermination factor; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; SPTR: Transcription antitermination protein nusG; TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG; NusG antitermination factor complement(2627928..2628485) Treponema succinifaciens DSM 2489 10432609 YP_004366626.1 CDS Tresu_2467 NC_015385.1 2628495 2628674 R InterPro IPR001901:IPR005807; KEGG: ssm:Spirs_0943 preprotein translocase, SecE subunit; PFAM: protein SecE/Sec61-gamma protein; SPTR: Preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial; Preprotein translocase subunit SecE complement(2628495..2628674) Treponema succinifaciens DSM 2489 10432610 YP_004366627.1 CDS Tresu_2468 NC_015385.1 2628811 2628987 R HAMAP: ribosomal protein L33; InterPro IPR001705; KEGG: tde:TDE2428 50S ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; 50S ribosomal protein L33 complement(2628811..2628987) Treponema succinifaciens DSM 2489 10432612 YP_004366628.1 CDS Tresu_2469 NC_015385.1 2629214 2630077 R COGs: COG1045 serine acetyltransferase; InterPro IPR001451; KEGG: sta:STHERM_c02440 serine acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; PRIAM: serine O-acetyltransferase; SPTR: serine acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase; serine O-acetyltransferase complement(2629214..2630077) Treponema succinifaciens DSM 2489 10432614 YP_004366629.1 CDS Tresu_2470 NC_015385.1 2630114 2630620 R KEGG: cbk:CLL_A2046 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2630114..2630620) Treponema succinifaciens DSM 2489 10432615 YP_004366630.1 CDS Tresu_2471 NC_015385.1 2630748 2631014 R KEGG: hde:HDEF_2199 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2630748..2631014) Treponema succinifaciens DSM 2489 10432616 YP_004366631.1 CDS Tresu_2472 NC_015385.1 2630986 2631306 R COGs: COG2929 conserved hypothetical protein; InterPro IPR007460; KEGG: tde:TDE1807 hypothetical protein; PFAM: protein of unknown function DUF497; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF497); hypothetical protein complement(2630986..2631306) Treponema succinifaciens DSM 2489 10432617 YP_004366632.1 CDS Tresu_2473 NC_015385.1 2631470 2632864 R InterPro IPR011646; KEGG: pmz:HMPREF0659_A5717 kap family P-loop domain protein; PFAM: KAP P-loop; SPTR: Putative uncharacterized protein; PFAM: KAP family P-loop domain; KAP P-loop domain-containing protein complement(2631470..2632864) Treponema succinifaciens DSM 2489 10432618 YP_004366633.1 CDS Tresu_2474 NC_015385.1 2633121 2634068 R COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: bha:BH0900 transcriptional regulator (enhancement of xylanase A production); PFAM: Sulphatase-modifying factor; SPTR: Transcriptional regulator (Enhancement of xylanase A production); PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); Formylglycine-generating sulfatase enzyme; sulfatase-modifying factor protein complement(2633121..2634068) Treponema succinifaciens DSM 2489 10432619 YP_004366634.1 CDS Tresu_2475 NC_015385.1 2634171 2634350 R hypothetical protein complement(2634171..2634350) Treponema succinifaciens DSM 2489 10432620 YP_004366635.1 CDS Tresu_2476 NC_015385.1 2634599 2635210 R COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: tnp:Tnap_0743 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Predicted xylanase/chitin deacetylase; PFAM: polysaccharide deacetylase; polysaccharide deacetylase complement(2634599..2635210) Treponema succinifaciens DSM 2489 10432621 YP_004366636.1 CDS Tresu_2477 NC_015385.1 2635207 2635959 R InterPro IPR003812; KEGG: tde:TDE2745 fic family protein; PFAM: Filamentation induced by cAMP/death on curing-related; SPTR: Fic family protein; PFAM: Fic/DOC family; filamentation induced by cAMP protein fic complement(2635207..2635959) Treponema succinifaciens DSM 2489 10432622 YP_004366637.1 CDS Tresu_2478 NC_015385.1 2636198 2636917 R hypothetical protein complement(2636198..2636917) Treponema succinifaciens DSM 2489 10432623 YP_004366638.1 CDS Tresu_2479 NC_015385.1 2637056 2638207 D COGs: COG0455 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: tde:TDE1397 flagellar synthesis regulator FleN, ATPase AAA; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: ATP-binding protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Cobyrinic acid ac-diamide synthase 2637056..2638207 Treponema succinifaciens DSM 2489 10432624 YP_004366639.1 CDS Tresu_2480 NC_015385.1 2638213 2639214 D COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: tpp:TPASS_0852 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 2638213..2639214 Treponema succinifaciens DSM 2489 10432625 YP_004366640.1 CDS Tresu_2481 NC_015385.1 2639186 2639962 D InterPro IPR013216; KEGG: eel:EUBELI_01603 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Putative uncharacterized protein; PFAM: methyltransferase domain; methyltransferase type 11 2639186..2639962 Treponema succinifaciens DSM 2489 10432626 YP_004366641.1 CDS Tresu_2482 NC_015385.1 2640034 2641206 R COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR013982; KEGG: pmz:HMPREF0659_A5388 AICARFT/IMPCHase bienzyme; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; PRIAM: phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; SPTR: Putative uncharacterized protein; PFAM: AICARFT/IMPCHase bienzyme; phosphoribosylaminoimidazolecarboxamide formyltransferase complement(2640034..2641206) Treponema succinifaciens DSM 2489 10432627 YP_004366642.1 CDS Tresu_2483 NC_015385.1 2641221 2642516 R COGs: COG0106 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; InterPro IPR006062:IPR002496:IPR021130:IPR008179; KEGG: kko:Kkor_0859 phosphoribosyl-ATP diphosphatase; PFAM: histidine biosynthesis; phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase-like; PRIAM:1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamideisomerase., phosphoribosyl-AMP cyclohydrolase; SPTR: phosphoribosyl-ATP diphosphatase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; PFAM: histidine biosynthesis protein; phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-ATP diphosphatase complement(2641221..2642516) Treponema succinifaciens DSM 2489 10432628 YP_004366643.1 CDS Tresu_2484 NC_015385.1 2642546 2643931 R COGs: COG0044 dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680:IPR004722; KEGG: cbk:CLL_A2579 dihydroorotase, multifunctional complex type; PFAM: Amidohydrolase 1; PRIAM: dihydroorotase; SPTR: dihydroorotase; TIGRFAM: dihydroorotase; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type; dihydroorotase, multifunctional complex type complement(2642546..2643931) Treponema succinifaciens DSM 2489 10432629 YP_004366644.1 CDS Tresu_2485 NC_015385.1 2643943 2646408 R COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160:IPR001633; KEGG: bpb:bpr_I1850 GGDEF/EAL domain-containing protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SPTR: GGDEF/EAL domain-containing protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; ABC transporter substrate binding protein; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; diguanylate cyclase/phosphodiesterase complement(2643943..2646408) Treponema succinifaciens DSM 2489 10432630 YP_004366645.1 CDS Tresu_2486 NC_015385.1 2646655 2648466 R COGs: COG1032 Fe-S oxidoreductase; InterPro IPR013704:IPR007197:IPR006638; KEGG: ccb:Clocel_1340 radical SAM domain-containing protein; PFAM: Radical SAM N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: UPF0313 protein CK3_26800; PFAM: Domain of unknown function (DUF3362); Radical SAM superfamily; Radical SAM N-terminal; TIGRFAM: uncharacterized radical SAM protein YgiQ; Radical SAM domain protein complement(2646655..2648466) Treponema succinifaciens DSM 2489 10432631 YP_004366646.1 CDS Tresu_2487 NC_015385.1 2648697 2649122 D KEGG: sga:GALLO_1275 hypothetical protein; SPTR: Uroporphyrinogen-III decarboxylase; hypothetical protein 2648697..2649122 Treponema succinifaciens DSM 2489 10432632 YP_004366647.1 CDS Tresu_2488 NC_015385.1 2649177 2650340 R COGs: COG0348 polyferredoxin; InterPro IPR001450; KEGG: clj:CLJU_c26430 hypothetical protein; PFAM: 4Fe-4S binding domain; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(2649177..2650340) Treponema succinifaciens DSM 2489 10432633 YP_004366648.1 CDS Tresu_2489 NC_015385.1 2650352 2650984 R KEGG: clj:CLJU_c26420 hypothetical protein; SPTR: Putative membrane protein; hypothetical protein complement(2650352..2650984) Treponema succinifaciens DSM 2489 10432634 YP_004366649.1 CDS Tresu_2490 NC_015385.1 2651159 2652991 R COGs: COG0173 aspartyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR004115:IPR004524; KEGG: tde:TDE1587 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; PRIAM: aspartate--tRNA ligase; SPTR: aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type; aspartyl-tRNA synthetase complement(2651159..2652991) Treponema succinifaciens DSM 2489 10432635 YP_004366650.1 CDS Tresu_2491 NC_015385.1 2653115 2654440 R COGs: COG2206 HD-GYP domain; InterPro IPR006674:IPR003607; KEGG: bpb:bpr_I0933 HD-GYP domain-containing protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; PFAM: HD domain; metal dependent phosphohydrolase complement(2653115..2654440) Treponema succinifaciens DSM 2489 10432636 YP_004366651.1 CDS Tresu_2492 NC_015385.1 2654501 2656660 R InterPro IPR003305:IPR004197:IPR001701; KEGG: ccb:Clocel_1478 glycoside hydrolase family 9; PFAM: glycoside hydrolase, family 9; glycoside hydrolase, family 9, N-terminal, Ig-like; Carbohydrate-binding, CenC-like; PRIAM: Cellulose 1,4-beta-cellobiosidase; SPTR: Putative uncharacterized protein; PFAM: glycosyl hydrolase family 9; Carbohydrate binding domain; N-terminal ig-like domain of cellulase; cellulose 1,4-beta-cellobiosidase complement(2654501..2656660) Treponema succinifaciens DSM 2489 10432637 YP_004366652.1 CDS Tresu_2493 NC_015385.1 2656861 2658345 R COGs: COG1640 4-alpha-glucanotransferase; InterPro IPR003385; KEGG: ere:EUBREC_1840 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; PRIAM: 4-alpha-glucanotransferase; SPTR: 4-alpha-glucanotransferase; TIGRFAM: glycoside hydrolase, family 77; PFAM: 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; 4-alpha-glucanotransferase complement(2656861..2658345) Treponema succinifaciens DSM 2489 10432638 YP_004366653.1 CDS Tresu_2494 NC_015385.1 2658369 2659406 R COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: cst:CLOST_1214 transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory proteins, lacI family; family; LacI family transcriptional regulator complement(2658369..2659406) Treponema succinifaciens DSM 2489 10432639 YP_004366654.1 CDS Tresu_2495 NC_015385.1 2659500 2660345 R COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: cst:CLOST_1213 maltose transport protein amyc; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Maltose transport protein AmyC; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease complement(2659500..2660345) Treponema succinifaciens DSM 2489 10432640 YP_004366655.1 CDS Tresu_2496 NC_015385.1 2660342 2661190 R COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: ccb:Clocel_0514 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Putative starch degradation products transport system permease protein amyD; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease complement(2660342..2661190) Treponema succinifaciens DSM 2489 10432641 YP_004366656.1 CDS Tresu_2497 NC_015385.1 2661334 2662665 R COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: cst:CLOST_1210 extracellular solute-binding protein, family 1 precursor; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(2661334..2662665) Treponema succinifaciens DSM 2489 10432642 YP_004366657.1 CDS Tresu_2498 NC_015385.1 2663009 2664526 D COGs: COG0591 Na+/proline symporter; InterPro IPR001734:IPR011851:IPR019900; KEGG: mac:MA0003 sodium:proline symporter; PFAM: Sodium/solute symporter; SPTR: Putative uncharacterized protein; TIGRFAM: Sodium/proline symporter; Sodium/solute symporter, subgroup; PFAM: Sodium:solute symporter family; TIGRFAM: sodium/proline symporter; transporter, SSS family; sodium/proline symporter 2663009..2664526 Treponema succinifaciens DSM 2489 10432643 YP_004366658.1 CDS Tresu_2499 NC_015385.1 2664839 2665813 D COGs: COG2984 ABC transporter periplasmic component; InterPro IPR007487; KEGG: gsu:GSU0210 hypothetical protein; PFAM: ABC transporter substrate binding protein; SPTR: ABC transporter, periplasmic solute-binding protein; PFAM: ABC transporter substrate binding protein; ABC transporter substrate-binding protein 2664839..2665813 Treponema succinifaciens DSM 2489 10432644 YP_004366659.1 CDS Tresu_2500 NC_015385.1 2665822 2666739 D COGs: COG4120 ABC transporter permease component; InterPro IPR001851; KEGG: dat:HRM2_37770 ABC-type transporter, permease component; PFAM: ABC transporter permease; SPTR: ABC-type transporter, permease component; PFAM: Branched-chain amino acid transport system / permease component; ABC transporter permease 2665822..2666739 Treponema succinifaciens DSM 2489 10432645 YP_004366660.1 CDS Tresu_2501 NC_015385.1 2666736 2667539 D COGs: COG1101 ABC transporter ATPase component; InterPro IPR003439:IPR003593; KEGG: gem:GM21_0738 ABC transporter related; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter; phosphonate-transporting ATPase 2666736..2667539 Treponema succinifaciens DSM 2489 10432646 YP_004366661.1 CDS Tresu_2502 NC_015385.1 2667595 2668824 D COGs: COG1301 Na+/H+-dicarboxylate symporter; KEGG: tde:TDE1111 transporter, ATPase AAA; SPTR: Transporter, ATPase AAA; PFAM: Sodium:dicarboxylate symporter family; ATPase AAA 2667595..2668824 Treponema succinifaciens DSM 2489 10432647 YP_004366662.1 CDS Tresu_2503 NC_015385.1 2668826 2669590 D COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: tde:TDE2720 16S ribosomal RNA methyltransferase RsmE; PFAM: ribosomal RNA small subunit methyltransferase E; SPTR: Putative uncharacterized protein; TIGRFAM: ribosomal RNA small subunit methyltransferase E; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family; ribosomal RNA small subunit methyltransferase E 2668826..2669590 Treponema succinifaciens DSM 2489 10432648 YP_004366663.1 CDS Tresu_2504 NC_015385.1 2669592 2670836 D COGs: COG1415 conserved hypothetical protein; InterPro IPR008482; KEGG: cpi:Cpin_4063 protein of unknown function DUF763; PFAM: protein of unknown function DUF763; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function (DUF763); hypothetical protein 2669592..2670836 Treponema succinifaciens DSM 2489 10432649 YP_004366664.1 CDS Tresu_2505 NC_015385.1 2670833 2671486 R COGs: COG2011 ABC-type metal ion transport system permease component; InterPro IPR000515; KEGG: fsu:Fisuc_1035 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: D-methionine transport system permease protein MetI; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter permease complement(2670833..2671486) Treponema succinifaciens DSM 2489 10432650 YP_004366665.1 CDS Tresu_2506 NC_015385.1 2671483 2672502 R COGs: COG1135 ABC-type metal ion transport system ATPase component; InterPro IPR003439:IPR018449:IPR003593; KEGG: fsu:Fisuc_1036 ABC transporter; PFAM: ABC transporter-like; NIL domain; PRIAM: polyamine-transporting ATPase; SMART: NIL domain; ATPase, AAA+ type, core; SPTR: methionine import ATP-binding protein MetN; PFAM: ABC transporter; NIL domain; polyamine-transporting ATPase complement(2671483..2672502) Treponema succinifaciens DSM 2489 10432651 YP_004366666.1 CDS Tresu_2507 NC_015385.1 2672606 2673523 R COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: pdi:BDI_3794 RNA pseudouridylate synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; pseudouridine synthase complement(2672606..2673523) Treponema succinifaciens DSM 2489 10432652 YP_004366667.1 CDS Tresu_2508 NC_015385.1 2673645 2674445 D KEGG: tva:TVAG_154640 surface antigen BspA-like; SPTR: Putative uncharacterized protein; surface antigen BspA 2673645..2674445 Treponema succinifaciens DSM 2489 10432653 YP_004366668.1 CDS Tresu_2509 NC_015385.1 2674514 2676247 D COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR007329:IPR003953:IPR010960; KEGG: ssm:Spirs_3607 flavocytochrome c; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; FMN-binding; PRIAM: Succinate dehydrogenase; SMART: FMN-binding; SPTR: Flavocytochrome c; TIGRFAM: Flavocytochrome c; PFAM: FAD binding domain; FMN-binding domain; TIGRFAM: flavocytochrome c; flavocytochrome c 2674514..2676247 Treponema succinifaciens DSM 2489 10432654 YP_004366669.1 CDS Tresu_2510 NC_015385.1 2676548 2676979 R hypothetical protein complement(2676548..2676979) Treponema succinifaciens DSM 2489 10432655 YP_004366670.1 CDS Tresu_2511 NC_015385.1 2677274 2678635 D COGs: COG2848 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0210; InterPro IPR007841; KEGG: amt:Amet_3399 hypothetical protein; PFAM: Uncharacterised protein family UPF0210; SPTR: UPF0210 protein Amet_3399; PFAM: Uncharacterized ACR (DUF711); hypothetical protein 2677274..2678635 Treponema succinifaciens DSM 2489 10432656 YP_004366671.1 CDS Tresu_2512 NC_015385.1 2678871 2679767 D COGs: COG0284 orotidine-5'-phosphate decarboxylase; HAMAP: orotidine 5'-phosphate decarboxylase, type 2; InterPro IPR011995:IPR001754; KEGG: cbf:CLI_3377 orotidine 5'-phosphate decarboxylase; PFAM: orotidine 5'-phosphate decarboxylase domain; PRIAM: orotidine-5'-phosphate decarboxylase; SMART: orotidine 5'-phosphate decarboxylase domain; SPTR: orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase, type 2; PFAM: orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2; orotidine 5'-phosphate decarboxylase 2678871..2679767 Treponema succinifaciens DSM 2489 10432657 YP_004366672.1 CDS Tresu_2513 NC_015385.1 2679818 2681593 D COGs: COG0167 dihydroorotate dehydrogenase; InterPro IPR001433:IPR019480:IPR012135:IPR005720; KEGG: cac:CA_C2650 dihydroorotate dehydrogenase 1B; PFAM: dihydroorotate dehydrogenase, class 1/ 2; dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD/NAD(P)-binding; PRIAM: dihydroorotate oxidase; SPTR: dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, class 1; PFAM: dihydroorotate dehydrogenase; Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein; dihydroorotate dehydrogenase family protein 2679818..2681593 Treponema succinifaciens DSM 2489 10432658 YP_004366673.1 CDS Tresu_2514 NC_015385.1 2681598 2681966 R hypothetical protein complement(2681598..2681966) Treponema succinifaciens DSM 2489 10432659 YP_004366674.1 CDS Tresu_2515 NC_015385.1 2681970 2682515 R COGs: COG0597 lipoprotein signal peptidase; HAMAP: peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: sta:STHERM_c21430 signal peptidase II; PFAM: peptidase A8, signal peptidase II; SPTR: lipoprotein signal peptidase; TIGRFAM: peptidase A8, signal peptidase II; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase; lipoprotein signal peptidase complement(2681970..2682515) Treponema succinifaciens DSM 2489 10432660 YP_004366675.1 CDS Tresu_2516 NC_015385.1 2682602 2683159 D COGs: COG0622 phosphoesterase; InterPro IPR004843:IPR000979; KEGG: ccb:Clocel_0425 phosphodiesterase, MJ0936 family; PFAM: Metallo-dependent phosphatase; SPTR: Putative uncharacterized protein; TIGRFAM: phosphodiesterase MJ0936; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family; phosphodiesterase, MJ0936 family 2682602..2683159 Treponema succinifaciens DSM 2489 10432661 YP_004366676.1 CDS Tresu_2517 NC_015385.1 2683131 2684174 R hypothetical protein complement(2683131..2684174) Treponema succinifaciens DSM 2489 10432662 YP_004366677.1 CDS Tresu_2518 NC_015385.1 2684171 2685280 R COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: csc:Csac_2568 glycosyl transferase, group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase, group 1; PFAM: glycosyl transferases group 1; group 1 glycosyl transferase complement(2684171..2685280) Treponema succinifaciens DSM 2489 10432663 YP_004366678.1 CDS Tresu_2519 NC_015385.1 2685337 2686149 R COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: tde:TDE0050 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: RNA methyltransferase, TrmH family; PFAM: SpoU rRNA methylase family; tRNA/rRNA methyltransferase SpoU complement(2685337..2686149) Treponema succinifaciens DSM 2489 10432664 YP_004366679.1 CDS Tresu_2520 NC_015385.1 2686149 2687303 R COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: tde:TDE0051 alcohol dehydrogenase, iron-containing; PFAM: Alcohol dehydrogenase, iron-type; SPTR: Alcohol dehydrogenase, iron-containing; PFAM: Iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(2686149..2687303) Treponema succinifaciens DSM 2489 10432665 YP_004366680.1 CDS Tresu_2521 NC_015385.1 2687380 2687667 R InterPro IPR007412; KEGG: tde:TDE0201 hypothetical protein; PFAM: Anti-sigma-28 factor, FlgM; SPTR: Putative uncharacterized protein; PFAM: Anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM family protein complement(2687380..2687667) Treponema succinifaciens DSM 2489 10432666 YP_004366681.1 CDS Tresu_2522 NC_015385.1 2687639 2688388 R COGs: COG0313 methyltransferase; HAMAP: ribosomal RNA small subunit methyltransferase I; InterPro IPR000878:IPR008189; KEGG: tde:TDE0200 tetrapyrrole methylase family protein; PFAM: Tetrapyrrole methylase; SPTR: Tetrapyrrole methylase family protein; TIGRFAM: Uncharacterised protein family UPF0011; manually curated; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family; ribosomal RNA small subunit methyltransferase I complement(2687639..2688388) Treponema succinifaciens DSM 2489 10432667 YP_004366682.1 CDS Tresu_2523 NC_015385.1 2688581 2691400 D COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541:IPR003593; KEGG: tde:TDE0173 FtsK/SpoIIIE family protein; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; ATPase, AAA+ type, core; SPTR: FtsK/SpoIIIE family protein; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; cell division protein FtsK/SpoIIIE 2688581..2691400 Treponema succinifaciens DSM 2489 10432668 YP_004366683.1 CDS Tresu_2524 NC_015385.1 2691420 2692376 D COGs: COG3858 glycosyl hydrolase; InterPro IPR001223:IPR011583; KEGG: kcr:Kcr_0727 PKD domain-containing protein; PFAM: glycoside hydrolase, family 18, catalytic domain; SMART: Chitinase II; SPTR: PKD domain containing protein; PFAM: glycosyl hydrolases family 18; glycoside hydrolase family protein 2691420..2692376 Treponema succinifaciens DSM 2489 10432669 YP_004366684.1 CDS Tresu_2525 NC_015385.1 2692384 2694090 R KEGG: tde:TDE2751 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2692384..2694090) Treponema succinifaciens DSM 2489 10432670 YP_004366685.1 CDS Tresu_2526 NC_015385.1 2694283 2695062 D COGs: COG1464 ABC-type metal ion transport system periplasmic component/surface antigen; InterPro IPR004872; KEGG: fsu:Fisuc_1037 NlpA lipoprotein; PFAM: NLPA lipoprotein; SPTR: NLPA lipoprotein; PFAM: NLPA lipoprotein; TIGRFAM: lipoprotein, YaeC family; NLPA lipoprotein 2694283..2695062 Treponema succinifaciens DSM 2489 10432671 YP_004366686.1 CDS Tresu_2527 NC_015385.1 2695278 2696618 R InterPro IPR013105:IPR007560:IPR019734; KEGG: tpp:TPASS_0915 hypothetical protein; PFAM: Tetratricopeptide TPR2; Restriction endonuclease, type IV-like, Mrr; SPTR: TPR domain protein; PFAM: Restriction endonuclease; hypothetical protein complement(2695278..2696618) Treponema succinifaciens DSM 2489 10432672 YP_004366687.1 CDS Tresu_2528 NC_015385.1 2696733 2697905 R COGs: COG0436 aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: bcl:ABC2913 hypothetical protein; PFAM: Aminotransferase, class I/classII; PRIAM: aspartate transaminase; SPTR: aspartate aminotransferase; PFAM: Aminotransferase class I and II; aspartate transaminase complement(2696733..2697905) Treponema succinifaciens DSM 2489 10432673 YP_004366688.1 CDS Tresu_2529 NC_015385.1 2697906 2698400 R COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR019888; KEGG: cth:Cthe_0362 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; SPTR: Transcriptional regulator, AsnC family; PFAM: AsnC family; AsnC family transcriptional regulator complement(2697906..2698400) Treponema succinifaciens DSM 2489 10432674 YP_004366689.1 CDS Tresu_2530 NC_015385.1 2698428 2699045 R COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; InterPro IPR000807; KEGG: pmy:Pmen_4256 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase; PRIAM: Imidazoleglycerol-phosphate dehydratase; SPTR: Imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase complement(2698428..2699045) Treponema succinifaciens DSM 2489 10432675 YP_004366690.1 CDS Tresu_2531 NC_015385.1 2699058 2699930 R COGs: COG0040 ATP phosphoribosyltransferase; InterPro IPR013820:IPR013115; KEGG: kko:Kkor_0854 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic domain; histidine biosynthesis HisG, C-terminal; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: histidine biosynthesis HisG, C-terminal; ATP phosphoribosyltransferase, catalytic domain; PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase; histidine biosynthesis protein HisG domain-containing protein complement(2699058..2699930) Treponema succinifaciens DSM 2489 10432676 YP_004366691.1 CDS Tresu_2532 NC_015385.1 2699982 2700701 R COGs: COG0120 ribose 5-phosphate isomerase; HAMAP: ribose-5-phosphate isomerase, type A, subgroup; InterPro IPR020672:IPR004788; KEGG: tde:TDE1641 ribose-5-phosphate isomerase A; PFAM: ribose 5-phosphate isomerase, type A; PRIAM: ribose-5-phosphate isomerase; SPTR: ribose-5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase, type A; PFAM: ribose 5-phosphate isomerase A (phosphoriboisomerase A); TIGRFAM: ribose 5-phosphate isomerase; ribose-5-phosphate isomerase A complement(2699982..2700701) Treponema succinifaciens DSM 2489 10432677 YP_004366692.1 CDS Tresu_2533 NC_015385.1 2700701 2702194 R COGs: COG0169 shikimate 5-dehydrogenase; HAMAP: Dehydroquinase class I; shikimate, quinate/shikimate dehydrogenase; InterPro IPR001381:IPR022893:IPR013708:IPR006151; KEGG: tde:TDE1640 3-dehydroquinate dehydratase, type 1, ATPase AAA/shikimate 5-dehydrogenase, ATPase AAA; PFAM: Dehydroquinase class I; shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: 3-dehydroquinate dehydratase, type 1, ATPase AAA/shikimate 5-dehydrogenase, ATPase AAA; PFAM: shikimate dehydrogenase substrate binding domain; Type I 3-dehydroquinase; shikimate / quinate 5-dehydrogenase; TIGRFAM: 3-dehydroquinate dehydratase, type I; shikimate 5-dehydrogenase; 3-dehydroquinate dehydratase complement(2700701..2702194) Treponema succinifaciens DSM 2489 10432678 YP_004366693.1 CDS Tresu_2534 NC_015385.1 2702196 2704292 R KEGG: tde:TDE0193 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2702196..2704292) Treponema succinifaciens DSM 2489 10432679 YP_004366694.1 CDS Tresu_2535 NC_015385.1 2704289 2706076 R COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR006935:IPR001650:IPR014001; KEGG: tde:TDE2721 helicase domain-containing protein; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: helicase; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; helicase complement(2704289..2706076) Treponema succinifaciens DSM 2489 10432680 YP_004366695.1 CDS Tresu_2536 NC_015385.1 2706571 2707113 D COGs: COG1592 Rubrerythrin; InterPro IPR004039:IPR003251; KEGG: fsu:Fisuc_1486 rubrerythrin; PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; SPTR: Putative uncharacterized protein; PFAM: Rubrerythrin; rubrerythrin 2706571..2707113 Treponema succinifaciens DSM 2489 10432681 YP_004366696.1 CDS Tresu_2537 NC_015385.1 2707191 2707595 D COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: bfr:BF3179 iron uptake regulatory protein; PFAM: Ferric-uptake regulator; SPTR: Putative uncharacterized protein; PFAM: Ferric uptake regulator family; ferric uptake regulator, Fur family 2707191..2707595 Treponema succinifaciens DSM 2489 10432682 YP_004366697.1 CDS Tresu_2538 NC_015385.1 2707598 2708257 R KEGG: tde:TDE2276 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2707598..2708257) Treponema succinifaciens DSM 2489 10432683 YP_004366698.1 CDS Tresu_2539 NC_015385.1 2708259 2708861 R COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: cpr:CPR_0034 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Probable transcription regulator; PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator complement(2708259..2708861) Treponema succinifaciens DSM 2489 10432684 YP_004366699.1 CDS Tresu_2540 NC_015385.1 2708865 2710019 R COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR000241; KEGG: tde:TDE0938 hypothetical protein; PFAM: Putative RNA methylase; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: RNA methylase family protein; PFAM: Putative RNA methylase family UPF0020; rRNA (guanine-N(2)-)-methyltransferase complement(2708865..2710019) Treponema succinifaciens DSM 2489 10432685 YP_004366700.1 CDS Tresu_2541 NC_015385.1 2710130 2711260 R COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein complement(2710130..2711260) Treponema succinifaciens DSM 2489 10432686 YP_004366701.1 CDS Tresu_2542 NC_015385.1 2711593 2712045 D COGs: COG3727 DNA G:T-mismatch repair endonuclease; InterPro IPR004603; KEGG: mru:mru_1429 DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; SPTR: DNA mismatch endonuclease vsr; TIGRFAM: DNA mismatch endonuclease vsr; PFAM: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease Vsr; DNA mismatch endonuclease Vsr 2711593..2712045 Treponema succinifaciens DSM 2489 10432687 YP_004366702.1 CDS Tresu_2543 NC_015385.1 2712056 2712559 R KEGG: csh:Closa_3587 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2712056..2712559) Treponema succinifaciens DSM 2489 10432688 YP_004366703.1 CDS Tresu_2544 NC_015385.1 2712948 2713526 R COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: bvu:BVU_3545 ATPase AAA iron-sulfur flavoprotein; PFAM: NADPH-dependent FMN reductase; SPTR: Putative uncharacterized protein; manually curated; PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(2712948..2713526) Treponema succinifaciens DSM 2489 10432689 YP_004366704.1 CDS Tresu_2545 NC_015385.1 2713592 2714017 R KEGG: fma:FMG_1380 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family; hypothetical protein complement(2713592..2714017) Treponema succinifaciens DSM 2489 10432690 YP_004366705.1 CDS Tresu_2546 NC_015385.1 2714070 2714765 R KEGG: ssm:Spirs_3341 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Predicted periplasmic protein (DUF2271); hypothetical protein complement(2714070..2714765) Treponema succinifaciens DSM 2489 10432691 YP_004366706.1 CDS Tresu_2547 NC_015385.1 2714781 2715374 R InterPro IPR001647; KEGG: sde:Sde_1314 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Regulatory protein, TetR; PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator complement(2714781..2715374) Treponema succinifaciens DSM 2489 10432692 YP_004366707.1 CDS Tresu_2548 NC_015385.1 2715461 2716243 R COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: bad:BAD_0619 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: AraC-type DNA-binding domain-containing proteins; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC family transcriptional regulator complement(2715461..2716243) Treponema succinifaciens DSM 2489 10432693 YP_004366708.1 CDS Tresu_2549 NC_015385.1 2716445 2717464 D COGs: COG2730 Endoglucanase; InterPro IPR001547; KEGG: cth:Cthe_2807 glycoside hydrolase family protein; PFAM: glycoside hydrolase, family 5; SPTR: Cellulase; PFAM: Cellulase (glycosyl hydrolase family 5); glycoside hydrolase family protein 2716445..2717464 Treponema succinifaciens DSM 2489 10432694 YP_004366709.1 CDS Tresu_2550 NC_015385.1 2717498 2719726 D COGs: COG2273 beta-glucanase/beta-glucan synthetase; InterPro IPR000757:IPR003305; KEGG: cpr:CPR_2607 laminarinase; PFAM: glycoside hydrolase, family 16; Carbohydrate-binding, CenC-like; PRIAM: Glucan endo-1,3-beta-D-glucosidase; SPTR: Endo-1,3(4)-beta-glucanase; PFAM: glycosyl hydrolases family 16; Carbohydrate binding domain; Glucan endo-1,3-beta-D-glucosidase 2717498..2719726 Treponema succinifaciens DSM 2489 10432695 YP_004366710.1 CDS Tresu_2551 NC_015385.1 2719820 2720464 R COGs: COG3153 acetyltransferase; InterPro IPR000182; KEGG: fsu:Fisuc_2110 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Predicted acetyltransferase; PFAM: Acetyltransferase (GNAT) family; GCN5-related N-acetyltransferase complement(2719820..2720464) Treponema succinifaciens DSM 2489 10432696 YP_004366711.1 CDS Tresu_2552 NC_015385.1 2720736 2721725 R KEGG: mev:Metev_2271 APHP domain-containing protein; SPTR: WD40-like beta Propeller; hypothetical protein complement(2720736..2721725) Treponema succinifaciens DSM 2489 10432697 YP_004366712.1 CDS Tresu_2553 NC_015385.1 2721828 2722109 D InterPro IPR001387; KEGG: cbo:CBO2391 DNA-binding phage protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: XRE family transcriptional regulator; PFAM: Helix-turn-helix; hypothetical protein 2721828..2722109 Treponema succinifaciens DSM 2489 10432698 YP_004366713.1 CDS Tresu_2554 NC_015385.1 2722187 2722465 R KEGG: cbi:CLJ_B2469 hypothetical protein; SPTR: Response regulator receiver protein; PFAM: Mor transcription activator family; hypothetical protein complement(2722187..2722465) Treponema succinifaciens DSM 2489 10432699 YP_004366714.1 CDS Tresu_2555 NC_015385.1 2722702 2723181 R COGs: COG3467 flavin-nucleotide-binding protein; KEGG: mma:MM_2842 5-nitroimidazole antibiotic resistance protein; SPTR: Putative nitroimidazole resistance protein; PFAM: Pyridoxamine 5'-phosphate oxidase; 5-nitroimidazole antibiotic resistance protein complement(2722702..2723181) Treponema succinifaciens DSM 2489 10432700 YP_004366715.1 CDS Tresu_2556 NC_015385.1 2723262 2724359 D COGs: COG0539 ribosomal protein S1; InterPro IPR003029:IPR022967; KEGG: geo:Geob_3539 30S ribosomal protein S1; PFAM: ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1; SPTR: RNA binding S1 domain protein; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1; RNA binding S1 domain-containing protein 2723262..2724359 Treponema succinifaciens DSM 2489 10432701 YP_004366716.1 CDS Tresu_2557 NC_015385.1 2724473 2724946 R InterPro IPR000086; KEGG: csh:Closa_1067 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: Putative uncharacterized protein; PFAM: NUDIX domain; NUDIX hydrolase complement(2724473..2724946) Treponema succinifaciens DSM 2489 10432702 YP_004366717.1 CDS Tresu_2558 NC_015385.1 2725213 2726622 D COGs: COG0548 Acetylglutamate kinase; InterPro IPR001048:IPR000182; KEGG: sta:STHERM_c17320 ATPase AAA amino acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; aspartate/glutamate/uridylate kinase; PRIAM: Amino-acid N-acetyltransferase; SPTR: Putative amino acid acetyltransferase; PFAM: Acetyltransferase (GNAT) family; Amino acid kinase family; TIGRFAM: amino-acid N-acetyltransferase; Amino-acid N-acetyltransferase 2725213..2726622 Treponema succinifaciens DSM 2489 10432704 YP_004366718.1 CDS Tresu_2559 NC_015385.1 2727381 2729837 R COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205:IPR006691:IPR005743; KEGG: tde:TDE0295 DNA gyrase, A subunit; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: DNA gyrase, A subunit; TIGRFAM: DNA gyrase, subunit A; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit; DNA gyrase subunit A complement(2727381..2729837) Treponema succinifaciens DSM 2489 10432706 YP_004366719.1 CDS Tresu_2560 NC_015385.1 2729846 2731771 R COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR013506:IPR006171:IPR002288:IPR 011557:IPR001241; KEGG: tde:TDE0002 DNA gyrase, B subunit; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, subunit B; PFAM: Toprim domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit; DNA gyrase subunit B complement(2729846..2731771) Treponema succinifaciens DSM 2489 10432707 YP_004366720.1 CDS Tresu_2561 NC_015386.1 5 436 D hypothetical protein 5..436 Treponema succinifaciens DSM 2489 10432871 YP_004366721.1 CDS Tresu_2562 NC_015386.1 463 831 D hypothetical protein 463..831 Treponema succinifaciens DSM 2489 10432709 YP_004366722.1 CDS Tresu_2563 NC_015386.1 915 1331 D COGs: COG3628 Phage baseplate assembly protein W; InterPro IPR007048; KEGG: hbo:Hbor_38680 phage baseplate assembly protein W; PFAM: GPW/gp25; SPTR: Phage baseplate assembly protein W; PFAM: Gene 25-like lysozyme; GPW/gp25 family protein 915..1331 Treponema succinifaciens DSM 2489 10432710 YP_004366723.1 CDS Tresu_2564 NC_015386.1 1306 4272 D KEGG: hoh:Hoch_3608 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Baseplate J-like protein; TIGRFAM: conserved hypothetical protein, phage tail-like region; hypothetical protein 1306..4272 Treponema succinifaciens DSM 2489 10432711 YP_004366724.1 CDS Tresu_2565 NC_015386.1 4275 4769 D hypothetical protein 4275..4769 Treponema succinifaciens DSM 2489 10432712 YP_004366725.1 CDS Tresu_2566 NC_015386.1 4786 5991 D COGs: COG3497 Phage tail sheath protein FI; InterPro IPR007067; KEGG: hoh:Hoch_3656 tail sheath protein; SPTR: Tail sheath protein; PFAM: Phage tail sheath protein; tail sheath protein 4786..5991 Treponema succinifaciens DSM 2489 10432713 YP_004366726.1 CDS Tresu_2567 NC_015386.1 6046 6474 D InterPro IPR011747; KEGG: pca:Pcar_2895 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein; hypothetical protein 6046..6474 Treponema succinifaciens DSM 2489 10432714 YP_004366727.1 CDS Tresu_2568 NC_015386.1 6519 7817 D hypothetical protein 6519..7817 Treponema succinifaciens DSM 2489 10432715 YP_004366728.1 CDS Tresu_2569 NC_015386.1 7796 8215 D hypothetical protein 7796..8215 Treponema succinifaciens DSM 2489 10432716 YP_004366729.1 CDS Tresu_2570 NC_015386.1 8218 8625 D InterPro IPR009666; KEGG: hoh:Hoch_3616 hypothetical protein; PFAM: Uncharacterised protein family Ycf35; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1257); hypothetical protein 8218..8625 Treponema succinifaciens DSM 2489 10432717 YP_004366730.1 CDS Tresu_2571 NC_015386.1 8616 9428 D InterPro IPR011748; KEGG: hoh:Hoch_3609 phage tail protein; SPTR: Phage tail protein; TIGRFAM: Phage tail protein; PFAM: Phage tail protein (Tail_P2_I); TIGRFAM: phage tail protein domain; phage tail protein 8616..9428 Treponema succinifaciens DSM 2489 10432718 YP_004366731.1 CDS Tresu_2572 NC_015386.1 9438 11441 D KEGG: ttu:TERTU_3732 PaaR motif protein; SPTR: PAAR motif protein; PFAM: Phage-related baseplate assembly protein; hypothetical protein 9438..11441 Treponema succinifaciens DSM 2489 10432719 YP_004366732.1 CDS Tresu_2573 NC_015386.1 11438 11575 D hypothetical protein 11438..11575 Treponema succinifaciens DSM 2489 10432720 YP_004366733.1 CDS Tresu_2574 NC_015386.1 11576 15064 D InterPro IPR016047; KEGG: pfa:PFC0235w conserved Plasmodium protein, unknown function; PFAM: Peptidase M23; SPTR: GRIP and coiled-coil domain-containing protein PFC0235w; PFAM: Peptidase family M23; peptidase M23 11576..15064 Treponema succinifaciens DSM 2489 10432721 YP_004366734.1 CDS Tresu_2575 NC_015386.1 15061 16170 D KEGG: tde:TDE0546 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 15061..16170 Treponema succinifaciens DSM 2489 10432722 YP_004366735.1 CDS Tresu_2576 NC_015386.1 16202 16723 D KEGG: gsu:GSU0983 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phage-related baseplate assembly protein; hypothetical protein 16202..16723 Treponema succinifaciens DSM 2489 10432723 YP_004366736.1 CDS Tresu_2577 NC_015386.1 16720 18060 D KEGG: ttu:TERTU_3732 PaaR motif protein; SPTR: PAAR motif protein; hypothetical protein 16720..18060 Treponema succinifaciens DSM 2489 10432724 YP_004366737.1 CDS Tresu_2578 NC_015386.1 18105 18983 R COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: cph:Cpha266_2112 integrase catalytic subunit; PFAM: Integrase, catalytic core; SPTR: Integrase, catalytic region; PFAM: Integrase core domain; integrase catalytic subunit complement(18105..18983) Treponema succinifaciens DSM 2489 10432725 YP_004366738.1 CDS Tresu_2579 NC_015386.1 19014 19304 R InterPro IPR002514; KEGG: lby:Lbys_0266 transposase IS3/is911 family protein; PFAM: Transposase IS3/IS911family; SPTR: Putative uncharacterized protein; PFAM: Transposase; transposase IS3/IS911 family protein complement(19014..19304) Treponema succinifaciens DSM 2489 10432726 YP_004366739.1 CDS Tresu_2580 NC_015386.1 19355 20359 D InterPro IPR016047; KEGG: ddf:DEFDS_1597 peptidase M23/M37 family; PFAM: Peptidase M23; SPTR: M23 peptidase domain protein; PFAM: Peptidase family M23; peptidase M23 19355..20359 Treponema succinifaciens DSM 2489 10432727 YP_004366740.1 CDS Tresu_2581 NC_015386.1 20356 21522 D InterPro IPR013247; KEGG: tde:TDE0546 hypothetical protein; PFAM: SH3, type 3; SPTR: Putative uncharacterized protein; SH3 type 3 domain-containing protein 20356..21522 Treponema succinifaciens DSM 2489 10432728 YP_004366741.1 CDS Tresu_2582 NC_015386.1 21527 22309 D KEGG: ttu:TERTU_3732 PaaR motif protein; SPTR: Putative uncharacterized protein; hypothetical protein 21527..22309 Treponema succinifaciens DSM 2489 10432729 YP_004366742.1 CDS Tresu_2583 NC_015386.1 22293 23231 R KEGG: bpb:bpr_I2173 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(22293..23231) Treponema succinifaciens DSM 2489 10432730 YP_004366743.1 CDS Tresu_2584 NC_015386.1 23231 24034 R InterPro IPR010359; KEGG: bpb:bpr_I2174 hypothetical protein; PFAM: Protein of unknown function DUF955; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF955); hypothetical protein complement(23231..24034) Treponema succinifaciens DSM 2489 10432731 YP_004366744.1 CDS Tresu_2585 NC_015386.1 24034 24396 R KEGG: bpb:bpr_I2175 HTH domain-containing protein; SPTR: HTH domain-containing protein; HTH domain-containing protein complement(24034..24396) Treponema succinifaciens DSM 2489 10432732 YP_004366745.1 CDS Tresu_2586 NC_015386.1 24573 26093 D KEGG: hoh:Hoch_3610 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 24573..26093 Treponema succinifaciens DSM 2489 10432733 YP_004366746.1 CDS Tresu_2587 NC_015386.1 26109 26477 D InterPro IPR000253; KEGG: gbr:Gbro_0031 forkhead-associated protein; PFAM: Forkhead-associated (FHA) domain; SPTR: Forkhead-associated protein; PFAM: FHA domain; forkhead-associated protein 26109..26477 Treponema succinifaciens DSM 2489 10432734 YP_004366747.1 CDS Tresu_2588 NC_015386.1 26488 27645 D InterPro IPR002035; KEGG: amt:Amet_1755 von Willebrand factor, type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor, type A; PFAM: von Willebrand factor type A domain; von Willebrand factor type A 26488..27645 Treponema succinifaciens DSM 2489 10432735 YP_004366748.1 CDS Tresu_2589 NC_015386.1 27655 29139 D COGs: COG3497 Phage tail sheath protein FI; InterPro IPR007067; KEGG: fre:Franean1_3816 tail sheath protein; SPTR: Phage tail sheath protein; PFAM: Phage tail sheath protein; tail sheath protein 27655..29139 Treponema succinifaciens DSM 2489 10432736 YP_004366749.1 CDS Tresu_2590 NC_015386.1 29164 29604 D InterPro IPR011747; KEGG: noc:Noc_1873 phage tail region protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein; hypothetical protein 29164..29604 Treponema succinifaciens DSM 2489 10432737 YP_004366750.1 CDS Tresu_2591 NC_015386.1 29628 30248 D KEGG: gsu:GSU0981 hypothetical protein; SPTR: Peptidoglycan-binding lysin domain protein; hypothetical protein 29628..30248 Treponema succinifaciens DSM 2489 10432738 YP_004366751.1 CDS Tresu_2592 NC_015386.1 30272 32008 D COGs: COG3500 Phage protein D; KEGG: rrs:RoseRS_1663 rhs element Vgr protein; SPTR: Putative uncharacterized protein; PFAM: Phage late control gene D protein (GPD); hypothetical protein 30272..32008 Treponema succinifaciens DSM 2489 10432739 YP_004366752.1 CDS Tresu_2593 NC_015386.1 32010 32651 D hypothetical protein 32010..32651 Treponema succinifaciens DSM 2489 10432740 YP_004366753.1 CDS Tresu_2594 NC_015386.1 32710 33087 D hypothetical protein 32710..33087 Treponema succinifaciens DSM 2489 10432741 YP_004366754.1 CDS Tresu_2595 NC_015386.1 33343 33891 D hypothetical protein 33343..33891 Treponema succinifaciens DSM 2489 10432742 YP_004366755.1 CDS Tresu_2596 NC_015386.1 33956 34711 D hypothetical protein 33956..34711 Treponema succinifaciens DSM 2489 10432743 YP_004366756.1 CDS Tresu_2597 NC_015386.1 34714 35922 D KEGG: pwa:Pecwa_4259 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 34714..35922 Treponema succinifaciens DSM 2489 10432744 YP_004366757.1 CDS Tresu_2598 NC_015386.1 35943 36857 D SPTR: Putative uncharacterized protein; hypothetical protein 35943..36857 Treponema succinifaciens DSM 2489 10432745 YP_004366758.1 CDS Tresu_2599 NC_015386.1 36914 37768 D KEGG: ypi:YpsIP31758_2491 hypothetical protein; SPTR: Conserved domain protein; PFAM: Protein of unknown function (DUF3289); hypothetical protein 36914..37768 Treponema succinifaciens DSM 2489 10432746 YP_004366759.1 CDS Tresu_2600 NC_015386.1 37765 38262 D hypothetical protein 37765..38262 Treponema succinifaciens DSM 2489 10432747 YP_004366760.1 CDS Tresu_2601 NC_015386.1 38275 38529 D hypothetical protein 38275..38529 Treponema succinifaciens DSM 2489 10432748 YP_004366761.1 CDS Tresu_2602 NC_015386.1 38522 38881 D hypothetical protein 38522..38881 Treponema succinifaciens DSM 2489 10432749 YP_004366762.1 CDS Tresu_2603 NC_015386.1 38921 39802 R COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: cph:Cpha266_2112 integrase catalytic subunit; PFAM: Integrase, catalytic core; SPTR: Integrase, catalytic region; PFAM: Integrase core domain; integrase catalytic subunit complement(38921..39802) Treponema succinifaciens DSM 2489 10432750 YP_004366763.1 CDS Tresu_2604 NC_015386.1 39829 40119 R InterPro IPR002514; KEGG: lby:Lbys_0266 transposase IS3/is911 family protein; PFAM: Transposase IS3/IS911family; SPTR: Putative uncharacterized protein; PFAM: Transposase; transposase IS3/IS911 family protein complement(39829..40119) Treponema succinifaciens DSM 2489 10432751 YP_004366764.1 CDS Tresu_2605 NC_015386.1 40567 40926 D hypothetical protein 40567..40926 Treponema succinifaciens DSM 2489 10432752 YP_004366765.1 CDS Tresu_2606 NC_015386.1 40923 41294 D hypothetical protein 40923..41294 Treponema succinifaciens DSM 2489 10432753 YP_004366766.1 CDS Tresu_2607 NC_015386.1 41270 41467 D hypothetical protein 41270..41467 Treponema succinifaciens DSM 2489 10432754 YP_004366767.1 CDS Tresu_2608 NC_015386.1 41563 43416 D COGs: COG3500 Phage protein D; KEGG: npu:Npun_F1409 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phage late control gene D protein (GPD); hypothetical protein 41563..43416 Treponema succinifaciens DSM 2489 10432755 YP_004366768.1 CDS Tresu_2609 NC_015386.1 43435 44328 D hypothetical protein 43435..44328 Treponema succinifaciens DSM 2489 10432756 YP_004366769.1 CDS Tresu_2610 NC_015386.1 44371 45165 D hypothetical protein 44371..45165 Treponema succinifaciens DSM 2489 10432757 YP_004366770.1 CDS Tresu_2611 NC_015386.1 45186 45707 D hypothetical protein 45186..45707 Treponema succinifaciens DSM 2489 10432758 YP_004366771.1 CDS Tresu_2612 NC_015386.1 45704 46258 D hypothetical protein 45704..46258 Treponema succinifaciens DSM 2489 10432759 YP_004366772.1 CDS Tresu_2613 NC_015386.1 46758 48494 D COGs: COG3500 Phage protein D; KEGG: npu:Npun_F1409 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phage late control gene D protein (GPD); hypothetical protein 46758..48494 Treponema succinifaciens DSM 2489 10432760 YP_004366773.1 CDS Tresu_2614 NC_015386.1 48498 49451 D KEGG: ypy:YPK_2589 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 48498..49451 Treponema succinifaciens DSM 2489 10432761 YP_004366774.1 CDS Tresu_2615 NC_015386.1 49448 49900 D hypothetical protein 49448..49900 Treponema succinifaciens DSM 2489 10432762 YP_004366775.1 CDS Tresu_2617 NC_015386.1 51085 52410 D COGs: COG3179 chitinase; KEGG: abc:ACICU_03562 chitinase; SPTR: Predicted chitinase; hypothetical protein 51085..52410 Treponema succinifaciens DSM 2489 10432764 YP_004366776.1 CDS Tresu_2618 NC_015386.1 52422 52634 D hypothetical protein 52422..52634 Treponema succinifaciens DSM 2489 10432765 YP_004366777.1 CDS Tresu_2619 NC_015386.1 52655 52945 D InterPro IPR002514; KEGG: lby:Lbys_0266 transposase IS3/is911 family protein; PFAM: Transposase IS3/IS911family; SPTR: Putative uncharacterized protein; PFAM: Transposase; transposase IS3/IS911 family protein 52655..52945 Treponema succinifaciens DSM 2489 10432766 YP_004366778.1 CDS Tresu_2620 NC_015386.1 52972 53853 D COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: cph:Cpha266_2112 integrase catalytic subunit; PFAM: Integrase, catalytic core; SPTR: Integrase, catalytic region; PFAM: Integrase core domain; integrase catalytic subunit 52972..53853 Treponema succinifaciens DSM 2489 10432767 YP_004366779.1 CDS Tresu_2621 NC_015386.1 53901 54440 D hypothetical protein 53901..54440 Treponema succinifaciens DSM 2489 10432768 YP_004366780.1 CDS Tresu_2622 NC_015386.1 54536 56215 D COGs: COG3500 Phage protein D; KEGG: npu:Npun_F1409 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phage late control gene D protein (GPD); hypothetical protein 54536..56215 Treponema succinifaciens DSM 2489 10432769 YP_004366781.1 CDS Tresu_2623 NC_015386.1 56208 57179 D KEGG: cvi:CV_2125 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 56208..57179 Treponema succinifaciens DSM 2489 10432770 YP_004366782.1 CDS Tresu_2624 NC_015386.1 57176 57886 D hypothetical protein 57176..57886 Treponema succinifaciens DSM 2489 10432771 YP_004366783.1 CDS Tresu_2625 NC_015386.1 57973 59055 D hypothetical protein 57973..59055 Treponema succinifaciens DSM 2489 10432772 YP_004366784.1 CDS Tresu_2626 NC_015386.1 59168 61033 D KEGG: npu:Npun_F1409 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phage late control gene D protein (GPD); hypothetical protein 59168..61033 Treponema succinifaciens DSM 2489 10432773 YP_004366785.1 CDS Tresu_2627 NC_015386.1 61035 61892 D hypothetical protein 61035..61892 Treponema succinifaciens DSM 2489 10432774 YP_004366786.1 CDS Tresu_2628 NC_015386.1 61976 62521 D COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: amr:AM1_0457 anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM; SPTR: Anaerobic ribonucleoside-triphosphate reductase-activating protein; manually curated; PFAM: Radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; Radical SAM domain protein 61976..62521 Treponema succinifaciens DSM 2489 10432775 YP_004366787.1 CDS Tresu_2629 NC_015386.1 62545 64068 D COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959:IPR003593; KEGG: hoh:Hoch_3615 AAA ATPase central domain protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase central domain protein; PFAM: ATPase family associated with various cellular activities (AAA); AAA ATPase central domain-containing protein 62545..64068 Treponema succinifaciens DSM 2489 10432776 YP_004366788.1 CDS Tresu_2630 NC_015386.1 64086 66137 D KEGG: ttu:TERTU_3732 PaaR motif protein; SPTR: PAAR motif protein; PFAM: Phage-related baseplate assembly protein; hypothetical protein 64086..66137 Treponema succinifaciens DSM 2489 10432777 YP_004366789.1 CDS Tresu_2631 NC_015386.1 66150 69644 D hypothetical protein 66150..69644 Treponema succinifaciens DSM 2489 10432778 YP_004366790.1 CDS Tresu_2632 NC_015386.1 69659 70129 D hypothetical protein 69659..70129 Treponema succinifaciens DSM 2489 10432779 YP_004366791.1 CDS Tresu_2633 NC_015386.1 70219 70428 D hypothetical protein 70219..70428 Treponema succinifaciens DSM 2489 10432780 YP_004366792.1 CDS Tresu_2634 NC_015386.1 70412 70720 D hypothetical protein 70412..70720 Treponema succinifaciens DSM 2489 10432781 YP_004366793.1 CDS Tresu_2635 NC_015386.1 71074 71745 D InterPro IPR002110; KEGG: tva:TVAG_496720 ankyrin repeat protein; PFAM: Ankyrin repeat; SMART: Ankyrin repeat; SPTR: Ankyrin repeat protein, putative; PFAM: Ankyrin repeat; ankyrin 71074..71745 Treponema succinifaciens DSM 2489 10432782 YP_004366794.1 CDS Tresu_2636 NC_015386.1 72054 72371 D hypothetical protein 72054..72371 Treponema succinifaciens DSM 2489 10432783 YP_004366795.1 CDS Tresu_2637 NC_015386.1 72368 72844 D hypothetical protein 72368..72844 Treponema succinifaciens DSM 2489 10432784 YP_004366796.1 CDS Tresu_2638 NC_015386.1 72862 75015 D KEGG: ttu:TERTU_3732 PaaR motif protein; SPTR: PAAR motif protein; PFAM: Phage-related baseplate assembly protein; hypothetical protein 72862..75015 Treponema succinifaciens DSM 2489 10432785 YP_004366797.1 CDS Tresu_2639 NC_015386.1 75015 77285 D hypothetical protein 75015..77285 Treponema succinifaciens DSM 2489 10432786 YP_004366798.1 CDS Tresu_2640 NC_015386.1 77297 78193 D KEGG: bmd:BMD_2955 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 77297..78193 Treponema succinifaciens DSM 2489 10432787 YP_004366799.1 CDS Tresu_2641 NC_015386.1 78190 79221 D KEGG: bmd:BMD_2955 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 78190..79221 Treponema succinifaciens DSM 2489 10432788 YP_004366800.1 CDS Tresu_2642 NC_015386.1 79218 80276 D KEGG: bwe:BcerKBAB4_1156 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 79218..80276 Treponema succinifaciens DSM 2489 10432789 YP_004366801.1 CDS Tresu_2643 NC_015386.1 80273 81196 D KEGG: bmd:BMD_2955 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 80273..81196 Treponema succinifaciens DSM 2489 10432790 YP_004366802.1 CDS Tresu_2644 NC_015386.1 81193 82437 D hypothetical protein 81193..82437 Treponema succinifaciens DSM 2489 10432791 YP_004366803.1 CDS Tresu_2645 NC_015386.1 82434 83639 D hypothetical protein 82434..83639 Treponema succinifaciens DSM 2489 10432792 YP_004366804.1 CDS Tresu_2647 NC_015386.1 84215 84853 D KEGG: npu:Npun_F1410 rhs element Vgr protein; SPTR: Rhs element Vgr protein; PFAM: Phage-related baseplate assembly protein; rhs element Vgr protein 84215..84853 Treponema succinifaciens DSM 2489 10432794 YP_004366805.1 CDS Tresu_2648 NC_015386.1 84866 85072 D KEGG: hoh:Hoch_3617 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2997); hypothetical protein 84866..85072 Treponema succinifaciens DSM 2489 10432795 YP_004366806.1 CDS Tresu_2649 NC_015386.1 85072 85446 D KEGG: cce:Ccel_1503 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 85072..85446 Treponema succinifaciens DSM 2489 10432796 YP_004366807.1 CDS Tresu_2650 NC_015386.1 85446 86192 D KEGG: ccb:Clocel_2667 pentapeptide repeat protein; SPTR: Pentapeptide repeat protein; hypothetical protein 85446..86192 Treponema succinifaciens DSM 2489 10432797 YP_004366808.1 CDS Tresu_2651 NC_015386.1 86194 86604 D hypothetical protein 86194..86604 Treponema succinifaciens DSM 2489 10432798 YP_004366809.1 CDS Tresu_2653 NC_015386.1 86904 88034 D COGs: COG5433 Transposase; InterPro IPR002559; KEGG: wch:wcw_1896 transposase; PFAM: Transposase, IS4-like; SPTR: IS1548, transposase; PFAM: Transposase DDE domain; transposase IS4 family protein 86904..88034 Treponema succinifaciens DSM 2489 10432800 YP_004366810.1 CDS Tresu_2654 NC_015386.1 88354 88503 D hypothetical protein 88354..88503 Treponema succinifaciens DSM 2489 10432801 YP_004366811.1 CDS Tresu_2655 NC_015386.1 88538 91852 D KEGG: bfo:BRAFLDRAFT_63199 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 88538..91852 Treponema succinifaciens DSM 2489 10432802 YP_004366812.1 CDS Tresu_2656 NC_015386.1 91849 93105 D KEGG: pfd:PFDG_03181 conserved hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 91849..93105 Treponema succinifaciens DSM 2489 10432803 YP_004366813.1 CDS Tresu_2657 NC_015386.1 93102 94166 D hypothetical protein 93102..94166 Treponema succinifaciens DSM 2489 10432804 YP_004366814.1 CDS Tresu_2658 NC_015386.1 94153 94848 D KEGG: chl:Chy400_2334 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 94153..94848 Treponema succinifaciens DSM 2489 10432805 YP_004366815.1 CDS Tresu_2659 NC_015386.1 94833 95423 D hypothetical protein 94833..95423 Treponema succinifaciens DSM 2489 10432806 YP_004366816.1 CDS Tresu_2660 NC_015386.1 95664 96755 D KEGG: zro:ZYRO0F02750g hypothetical protein; hypothetical protein 95664..96755 Treponema succinifaciens DSM 2489 10432807 YP_004366817.1 CDS Tresu_2661 NC_015386.1 96745 97473 D KEGG: rca:Rcas_2828 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 96745..97473 Treponema succinifaciens DSM 2489 10432808 YP_004366818.1 CDS Tresu_2662 NC_015386.1 97470 98756 D hypothetical protein 97470..98756 Treponema succinifaciens DSM 2489 10432809 YP_004366819.1 CDS Tresu_2663 NC_015386.1 98758 99849 D KEGG: ssm:Spirs_1192 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 98758..99849 Treponema succinifaciens DSM 2489 10432810 YP_004366820.1 CDS Tresu_2664 NC_015386.1 99812 101731 D KEGG: vpo:Kpol_1058p4 hypothetical protein; SPTR: Secreted antigen SagBb; hypothetical protein 99812..101731 Treponema succinifaciens DSM 2489 10432811 YP_004366821.1 CDS Tresu_2665 NC_015386.1 101734 102486 D KEGG: amr:AM1_2540 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 101734..102486 Treponema succinifaciens DSM 2489 10432812 YP_004366822.1 CDS Tresu_2666 NC_015386.1 102474 104036 D KEGG: cai:Caci_5394 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 102474..104036 Treponema succinifaciens DSM 2489 10432813 YP_004366823.1 CDS Tresu_2667 NC_015386.1 104043 104423 D KEGG: lmh:LMHCC_1812 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 104043..104423 Treponema succinifaciens DSM 2489 10432814 YP_004366824.1 CDS Tresu_2668 NC_015386.1 104712 105041 D hypothetical protein 104712..105041 Treponema succinifaciens DSM 2489 10432815 YP_004366825.1 CDS Tresu_2669 NC_015386.1 105062 105610 D hypothetical protein 105062..105610 Treponema succinifaciens DSM 2489 10432816 YP_004366826.1 CDS Tresu_2670 NC_015386.1 105690 106571 R COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: cph:Cpha266_2112 integrase catalytic subunit; PFAM: Integrase, catalytic core; SPTR: Integrase, catalytic region; PFAM: Integrase core domain; integrase catalytic subunit complement(105690..106571) Treponema succinifaciens DSM 2489 10432817 YP_004366827.1 CDS Tresu_2671 NC_015386.1 106598 106888 R InterPro IPR002514; KEGG: lby:Lbys_0266 transposase IS3/is911 family protein; PFAM: Transposase IS3/IS911family; SPTR: Putative uncharacterized protein; PFAM: Transposase; transposase IS3/IS911 family protein complement(106598..106888) Treponema succinifaciens DSM 2489 10432818 YP_004366828.1 CDS Tresu_2673 NC_015386.1 107758 108048 D InterPro IPR002514; KEGG: lby:Lbys_0266 transposase IS3/is911 family protein; PFAM: Transposase IS3/IS911family; SPTR: Putative uncharacterized protein; PFAM: Transposase; transposase IS3/IS911 family protein 107758..108048 Treponema succinifaciens DSM 2489 10432820 YP_004366829.1 CDS Tresu_2674 NC_015386.1 108075 108956 D COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: cph:Cpha266_2112 integrase catalytic subunit; PFAM: Integrase, catalytic core; SPTR: Integrase, catalytic region; PFAM: Integrase core domain; integrase catalytic subunit 108075..108956 Treponema succinifaciens DSM 2489 10432821 YP_004366830.1 CDS Tresu_2675 NC_015386.1 110206 116133 R InterPro IPR003343; KEGG: dae:Dtox_1961 Ig domain protein group 2 domain protein; PFAM: Bacterial Ig-like, group 2; SPTR: Ig domain protein group 2 domain protein; PFAM: Bacterial Ig-like domain (group 2); Ig domain-containing protein group 2 domain-containing protein complement(110206..116133) Treponema succinifaciens DSM 2489 10432822 YP_004366831.1 CDS Tresu_2676 NC_015386.1 116181 117617 R COGs: COG2948 Type IV secretory pathway VirB10 protein; InterPro IPR005498; KEGG: paa:Paes_2355 conjugation TrbI family protein; PFAM: Type IV secretion system, VirB10 / TraB / TrbI; SPTR: Conjugation TrbI family protein; PFAM: Bacterial conjugation TrbI-like protein; conjugation TrbI family protein complement(116181..117617) Treponema succinifaciens DSM 2489 10432823 YP_004366832.1 CDS Tresu_2677 NC_015386.1 117614 118693 R COGs: COG3504 Type IV secretory pathway VirB9 protein; InterPro IPR010258; KEGG: paa:Paes_2354 P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX; SPTR: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein; TIGRFAM: P-type conjugative transfer protein TrbG; conjugal transfer protein TrbG/VirB9/cagX complement(117614..118693) Treponema succinifaciens DSM 2489 10432824 YP_004366833.1 CDS Tresu_2679 NC_015386.1 119591 120115 D KEGG: fsu:Fisuc_2165 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 119591..120115 Treponema succinifaciens DSM 2489 10432826 YP_004366834.1 CDS Tresu_2680 NC_015386.1 120119 120331 D SPTR: Putative uncharacterized protein; hypothetical protein 120119..120331 Treponema succinifaciens DSM 2489 10432827 YP_004366835.1 CDS Tresu_2681 NC_015386.1 120388 121584 R KEGG: gdj:Gdia_1601 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(120388..121584) Treponema succinifaciens DSM 2489 10432828 YP_004366836.1 CDS Tresu_2682 NC_015386.1 121928 123700 D COGs: COG0550 Topoisomerase IA; InterPro IPR006171:IPR013497:IPR003601:IPR003602; KEGG: dat:HRM2_25900 TopB; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; SPTR: DNA topoisomerase; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid; DNA topoisomerase 121928..123700 Treponema succinifaciens DSM 2489 10432829 YP_004366837.1 CDS Tresu_2683 NC_015386.1 123697 123849 D hypothetical protein 123697..123849 Treponema succinifaciens DSM 2489 10432830 YP_004366838.1 CDS Tresu_2684 NC_015386.1 123910 124479 R hypothetical protein complement(123910..124479) Treponema succinifaciens DSM 2489 10432831 YP_004366839.1 CDS Tresu_2685 NC_015386.1 124510 125346 R hypothetical protein complement(124510..125346) Treponema succinifaciens DSM 2489 10432832 YP_004366840.1 CDS Tresu_2686 NC_015386.1 125499 126119 D COGs: COG2932 transcriptional regulator protein; InterPro IPR019759; KEGG: eum:ECUMN_0588 regulatory protein CI from bacteriophage origin; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Prophage MuMc02, peptidase, family S24; PFAM: Peptidase S24-like; putative phage repressor 125499..126119 Treponema succinifaciens DSM 2489 10432833 YP_004366841.1 CDS Tresu_2687 NC_015386.1 126355 126609 D hypothetical protein 126355..126609 Treponema succinifaciens DSM 2489 10432834 YP_004366842.1 CDS Tresu_2688 NC_015386.1 126599 127423 D hypothetical protein 126599..127423 Treponema succinifaciens DSM 2489 10432835 YP_004366843.1 CDS Tresu_2689 NC_015386.1 127514 127810 R COGs: COG3093 Plasmid maintenance system antidote protein; InterPro IPR001387:IPR013430; KEGG: tde:TDE1610 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Addiction module antidote protein, HigA family; TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix; TIGRFAM: addiction module antidote protein, HigA family; plasmid maintenance system antidote protein complement(127514..127810) Treponema succinifaciens DSM 2489 10432836 YP_004366844.1 CDS Tresu_2690 NC_015386.1 127820 128101 R COGs: COG3549 Plasmid maintenance system killer protein; InterPro IPR007711; KEGG: mar:MAE_38920 plasmid maintenance system killer; PFAM: Plasmid maintenance system killer; SPTR: Toxin-antitoxin system, toxin component, RelE family; PFAM: Plasmid maintenance system killer protein; plasmid maintenance system killer protein complement(127820..128101) Treponema succinifaciens DSM 2489 10432837 YP_004366845.1 CDS Tresu_2691 NC_015386.1 128501 129130 R hypothetical protein complement(128501..129130) Treponema succinifaciens DSM 2489 10432838 YP_004366846.1 CDS Tresu_2692 NC_015386.1 129149 129451 R hypothetical protein complement(129149..129451) Treponema succinifaciens DSM 2489 10432839 YP_004366847.1 CDS Tresu_2693 NC_015386.1 129564 129794 R hypothetical protein complement(129564..129794) Treponema succinifaciens DSM 2489 10432840 YP_004366848.1 CDS Tresu_2694 NC_015386.1 129925 131142 D COGs: COG1373 ATPase (AAA+ superfamily); KEGG: dhd:Dhaf_0124 putative GTP-binding protein; SPTR: Putative uncharacterized protein; putative GTP-binding protein 129925..131142 Treponema succinifaciens DSM 2489 10432841 YP_004366849.1 CDS Tresu_2695 NC_015386.1 131293 133335 D COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: cpb:Cphamn1_0686 conjugal transfer coupling protein TraG; PFAM: Ti-type conjugative transfer system, TraG-like; SPTR: TRAG family protein; PFAM: TraG/TraD family; TRAG family protein 131293..133335 Treponema succinifaciens DSM 2489 10432842 YP_004366850.1 CDS Tresu_2696 NC_015386.1 133345 133776 D hypothetical protein 133345..133776 Treponema succinifaciens DSM 2489 10432843 YP_004366851.1 CDS Tresu_2697 NC_015386.1 133776 134708 D COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482; KEGG: paa:Paes_2346 P-type conjugative transfer ATPase TrbB; PFAM: Type II secretion system protein E; SPTR: P-type conjugative transfer ATPase TrbB; PFAM: Type II/IV secretion system protein; sigma-54 interacting domain-containing protein 133776..134708 Treponema succinifaciens DSM 2489 10432844 YP_004366852.1 CDS Tresu_2698 NC_015386.1 134760 135125 D PFAM: TrbC/VIRB2 family; hypothetical protein 134760..135125 Treponema succinifaciens DSM 2489 10432845 YP_004366853.1 CDS Tresu_2700 NC_015386.1 136519 136782 D InterPro IPR007792; PFAM: Type IV secretion system, VirB3 / TrbD / AvhB; PFAM: Type IV secretory pathway, VirB3-like protein; type IV secretory pathway VirB3 family protein 136519..136782 Treponema succinifaciens DSM 2489 10432847 YP_004366854.1 CDS Tresu_2701 NC_015386.1 136779 139355 D COGs: COG3451 Type IV secretory pathway VirB4 protein; InterPro IPR018145; KEGG: paa:Paes_1717 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; SPTR: CagE TrbE VirB component of type IV transporter system; PFAM: Domain of unknown function DUF87; CagE, TrbE, VirB family, component of type IV transporter system; TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; CagE, TrbE, VirB component of type IV transporter system 136779..139355 Treponema succinifaciens DSM 2489 10432848 YP_004366855.1 CDS Tresu_2702 NC_015386.1 139380 140306 D hypothetical protein 139380..140306 Treponema succinifaciens DSM 2489 10432849 YP_004366856.1 CDS Tresu_2703 NC_015386.1 140272 141312 D hypothetical protein 140272..141312 Treponema succinifaciens DSM 2489 10432850 YP_004366857.1 CDS Tresu_2704 NC_015386.1 141676 142587 R KEGG: fjo:Fjoh_0919 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(141676..142587) Treponema succinifaciens DSM 2489 10432851 YP_004366858.1 CDS Tresu_2705 NC_015386.1 142604 142933 R hypothetical protein complement(142604..142933) Treponema succinifaciens DSM 2489 10432852 YP_004366859.1 CDS Tresu_2706 NC_015386.1 143257 144234 D KEGG: gdj:Gdia_0961 conjugal transfer protein TrbL; SPTR: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; hypothetical protein 143257..144234 Treponema succinifaciens DSM 2489 10432853 YP_004366860.1 CDS Tresu_2707 NC_015386.1 144527 145408 R KEGG: cqu:CpipJ_CPIJ015899 myosin heavy chain; SPTR: Myosin heavy chain; hypothetical protein complement(144527..145408) Treponema succinifaciens DSM 2489 10432854 YP_004366861.1 CDS Tresu_2708 NC_015386.1 145405 145701 R hypothetical protein complement(145405..145701) Treponema succinifaciens DSM 2489 10432855 YP_004366862.1 CDS Tresu_2709 NC_015386.1 145714 145929 R hypothetical protein complement(145714..145929) Treponema succinifaciens DSM 2489 10432856 YP_004366863.1 CDS Tresu_2710 NC_015386.1 145926 146261 R PFAM: Single-strand binding protein family; hypothetical protein complement(145926..146261) Treponema succinifaciens DSM 2489 10432857 YP_004366864.1 CDS Tresu_2711 NC_015386.1 146592 147644 R SPTR: Putative uncharacterized protein; hypothetical protein complement(146592..147644) Treponema succinifaciens DSM 2489 10432858 YP_004366865.1 CDS Tresu_2712 NC_015386.1 147631 147897 R hypothetical protein complement(147631..147897) Treponema succinifaciens DSM 2489 10432859 YP_004366866.1 CDS Tresu_2713 NC_015386.1 147897 148193 R hypothetical protein complement(147897..148193) Treponema succinifaciens DSM 2489 10432860 YP_004366867.1 CDS Tresu_2714 NC_015386.1 148183 148995 R InterPro IPR003115; KEGG: dat:HRM2_38800 putative plasmid replication/partition related protein ParB; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: Putative plasmid replication/partition related protein ParB; PFAM: ParB-like nuclease domain; ParB domain-containing protein nuclease complement(148183..148995) Treponema succinifaciens DSM 2489 10432861 YP_004366868.1 CDS Tresu_2715 NC_015386.1 148995 149666 R COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: bre:BRE_2008 PF32 plasmid partition protein; SPTR: Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; hypothetical protein complement(148995..149666) Treponema succinifaciens DSM 2489 10432862 YP_004366869.1 CDS Tresu_2716 NC_015386.1 150337 151089 D COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: bhy:BHWA1_02684 plasmid partition protein; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Plasmid partition protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Cobyrinic acid ac-diamide synthase 150337..151089 Treponema succinifaciens DSM 2489 10432863 YP_004366870.1 CDS Tresu_2717 NC_015386.1 151106 151477 D hypothetical protein 151106..151477 Treponema succinifaciens DSM 2489 10432864 YP_004366871.1 CDS Tresu_2718 NC_015386.1 151481 152494 D KEGG: paa:Paes_2404 plasmid encoded RepA protein; SPTR: Replication initiation protein; PFAM: Plasmid encoded RepA protein; hypothetical protein 151481..152494 Treponema succinifaciens DSM 2489 10432865 YP_004366872.1 CDS Tresu_2719 NC_015386.1 153006 154397 R hypothetical protein complement(153006..154397) Treponema succinifaciens DSM 2489 10432866 YP_004366873.1 CDS Tresu_2720 NC_015386.1 154493 160900 R InterPro IPR003356:IPR000330:IPR001650:IPR014001; KEGG: chu:CHU_1466 SNF2 family helicase; PFAM: SNF2-related; DNA methylase, adenine-specific; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; SPTR: Putative methylase; manually curated; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; Eco57I restriction endonuclease; Protein of unknown function (DUF2466); SNF2-related protein complement(154493..160900) Treponema succinifaciens DSM 2489 10432867 YP_004366874.1 CDS Tresu_2722 NC_015386.1 163954 164643 R hypothetical protein complement(163954..164643) Treponema succinifaciens DSM 2489 10432869 YP_004366875.1 CDS Tresu_2723 NC_015386.1 164741 165508 R hypothetical protein complement(164741..165508) Treponema succinifaciens DSM 2489 10432870 Tresu_R0001 tRNA Tresu_R0001 NC_015385.1 25346 25418 R tRNA-Ala complement(25346..25418) Treponema succinifaciens DSM 2489 10430106 Tresu_R0002 tRNA Tresu_R0002 NC_015385.1 63273 63343 D tRNA-Gly 63273..63343 Treponema succinifaciens DSM 2489 10430139 Tresu_R0003 tRNA Tresu_R0003 NC_015385.1 127042 127115 R tRNA-Val complement(127042..127115) Treponema succinifaciens DSM 2489 10430203 Tresu_R0004 tRNA Tresu_R0004 NC_015385.1 147051 147124 D tRNA-Met 147051..147124 Treponema succinifaciens DSM 2489 10430222 Tresu_R0005 tRNA Tresu_R0005 NC_015385.1 210357 210429 D tRNA-Met 210357..210429 Treponema succinifaciens DSM 2489 10430280 Tresu_R0007 tRNA Tresu_R0007 NC_015385.1 464631 464704 D tRNA-Ala 464631..464704 Treponema succinifaciens DSM 2489 10430517 Tresu_R0010 tRNA Tresu_R0010 NC_015385.1 473308 473380 D tRNA-Asn 473308..473380 Treponema succinifaciens DSM 2489 10430525 Tresu_R0011 tRNA Tresu_R0011 NC_015385.1 480721 480794 D tRNA-Asp 480721..480794 Treponema succinifaciens DSM 2489 10430533 Tresu_R0012 tRNA Tresu_R0012 NC_015385.1 862611 862682 D tRNA-Cys 862611..862682 Treponema succinifaciens DSM 2489 10430912 Tresu_R0014 tRNA Tresu_R0014 NC_015385.1 974753 974826 D tRNA-Ala 974753..974826 Treponema succinifaciens DSM 2489 10431012 Tresu_R0017 tRNA Tresu_R0017 NC_015385.1 1053601 1053688 R tRNA-Leu complement(1053601..1053688) Treponema succinifaciens DSM 2489 10431085 Tresu_R0018 tRNA Tresu_R0018 NC_015385.1 1094402 1094483 D tRNA-Leu 1094402..1094483 Treponema succinifaciens DSM 2489 10431130 Tresu_R0019 tRNA Tresu_R0019 NC_015385.1 1102239 1102311 R tRNA-Pro complement(1102239..1102311) Treponema succinifaciens DSM 2489 10431139 Tresu_R0020 tRNA Tresu_R0020 NC_015385.1 1102347 1102420 R tRNA-Asp complement(1102347..1102420) Treponema succinifaciens DSM 2489 10431140 Tresu_R0022 tRNA Tresu_R0022 NC_015385.1 1131110 1131183 D tRNA-Ile 1131110..1131183 Treponema succinifaciens DSM 2489 10431171 Tresu_R0026 tRNA Tresu_R0026 NC_015385.1 1263235 1263309 D tRNA-Glu 1263235..1263309 Treponema succinifaciens DSM 2489 10431289 Tresu_R0028 tRNA Tresu_R0028 NC_015385.1 1296295 1296368 D tRNA-Arg 1296295..1296368 Treponema succinifaciens DSM 2489 10431319 Tresu_R0029 tRNA Tresu_R0029 NC_015385.1 1316194 1316266 R tRNA-Phe complement(1316194..1316266) Treponema succinifaciens DSM 2489 10431342 Tresu_R0030 tRNA Tresu_R0030 NC_015385.1 1317431 1317503 R tRNA-Pro complement(1317431..1317503) Treponema succinifaciens DSM 2489 10431344 Tresu_R0031 tRNA Tresu_R0031 NC_015385.1 1317512 1317585 R tRNA-Val complement(1317512..1317585) Treponema succinifaciens DSM 2489 10431345 Tresu_R0033 tRNA Tresu_R0033 NC_015385.1 1344036 1344119 D tRNA-Leu 1344036..1344119 Treponema succinifaciens DSM 2489 10431369 Tresu_R0034 tRNA Tresu_R0034 NC_015385.1 1390089 1390160 D tRNA-His 1390089..1390160 Treponema succinifaciens DSM 2489 10431412 Tresu_R0035 tRNA Tresu_R0035 NC_015385.1 1390192 1390265 D tRNA-Arg 1390192..1390265 Treponema succinifaciens DSM 2489 10431413 Tresu_R0036 tRNA Tresu_R0036 NC_015385.1 1390273 1390345 D tRNA-Lys 1390273..1390345 Treponema succinifaciens DSM 2489 10431414 Tresu_R0037 tRNA Tresu_R0037 NC_015385.1 1390385 1390465 D tRNA-Leu 1390385..1390465 Treponema succinifaciens DSM 2489 10431415 Tresu_R0038 tRNA Tresu_R0038 NC_015385.1 1390520 1390591 D tRNA-Gly 1390520..1390591 Treponema succinifaciens DSM 2489 10431416 Tresu_R0039 tRNA Tresu_R0039 NC_015385.1 1390640 1390714 D tRNA-Gly 1390640..1390714 Treponema succinifaciens DSM 2489 10431417 Tresu_R0040 tRNA Tresu_R0040 NC_015385.1 1456872 1456944 D tRNA-Thr 1456872..1456944 Treponema succinifaciens DSM 2489 10431478 Tresu_R0041 tRNA Tresu_R0041 NC_015385.1 1456951 1457031 D tRNA-Tyr 1456951..1457031 Treponema succinifaciens DSM 2489 10431479 Tresu_R0042 tRNA Tresu_R0042 NC_015385.1 1488377 1488449 D tRNA-Gly 1488377..1488449 Treponema succinifaciens DSM 2489 10431507 Tresu_R0043 tRNA Tresu_R0043 NC_015385.1 1522429 1522501 D tRNA-Met 1522429..1522501 Treponema succinifaciens DSM 2489 10431545 Tresu_R0044 tRNA Tresu_R0044 NC_015385.1 1628062 1628133 R tRNA-Glu complement(1628062..1628133) Treponema succinifaciens DSM 2489 10431630 Tresu_R0045 tRNA Tresu_R0045 NC_015385.1 1628170 1628240 R tRNA-Gln complement(1628170..1628240) Treponema succinifaciens DSM 2489 10431631 Tresu_R0046 tRNA Tresu_R0046 NC_015385.1 1636654 1636731 R tRNA-Arg complement(1636654..1636731) Treponema succinifaciens DSM 2489 10431640 Tresu_R0047 tRNA Tresu_R0047 NC_015385.1 1926391 1926463 D tRNA-Lys 1926391..1926463 Treponema succinifaciens DSM 2489 10431927 Tresu_R0048 tRNA Tresu_R0048 NC_015385.1 1958236 1958308 R tRNA-Gln complement(1958236..1958308) Treponema succinifaciens DSM 2489 10431954 Tresu_R0049 tRNA Tresu_R0049 NC_015385.1 2223513 2223595 R tRNA-Leu complement(2223513..2223595) Treponema succinifaciens DSM 2489 10432210 Tresu_R0050 tRNA Tresu_R0050 NC_015385.1 2317618 2317691 D tRNA-Pro 2317618..2317691 Treponema succinifaciens DSM 2489 10432294 Tresu_R0051 tRNA Tresu_R0051 NC_015385.1 2446823 2446895 R tRNA-Thr complement(2446823..2446895) Treponema succinifaciens DSM 2489 10432425 Tresu_R0054 tRNA Tresu_R0054 NC_015385.1 2534418 2534491 R tRNA-Ile complement(2534418..2534491) Treponema succinifaciens DSM 2489 10432502 Tresu_R0057 tRNA Tresu_R0057 NC_015385.1 2559098 2559184 R tRNA-Ser complement(2559098..2559184) Treponema succinifaciens DSM 2489 10432529 Tresu_R0058 tRNA Tresu_R0058 NC_015385.1 2559249 2559323 R tRNA-Arg complement(2559249..2559323) Treponema succinifaciens DSM 2489 10432530 Tresu_R0059 tRNA Tresu_R0059 NC_015385.1 2559371 2559460 R tRNA-Ser complement(2559371..2559460) Treponema succinifaciens DSM 2489 10432531 Tresu_R0060 tRNA Tresu_R0060 NC_015385.1 2559485 2559569 R tRNA-Ser complement(2559485..2559569) Treponema succinifaciens DSM 2489 10432532 Tresu_R0061 tRNA Tresu_R0061 NC_015385.1 2595146 2595219 R tRNA-Ala complement(2595146..2595219) Treponema succinifaciens DSM 2489 10432565 Tresu_R0062 tRNA Tresu_R0062 NC_015385.1 2628701 2628773 R tRNA-Trp complement(2628701..2628773) Treponema succinifaciens DSM 2489 10432611 Tresu_R0063 tRNA Tresu_R0063 NC_015385.1 2629019 2629091 R tRNA-Thr complement(2629019..2629091) Treponema succinifaciens DSM 2489 10432613 Tresu_R0064 tRNA Tresu_R0064 NC_015385.1 2725007 2725080 R tRNA-Val complement(2725007..2725080) Treponema succinifaciens DSM 2489 10432703 Tresu_R0006 rRNA Tresu_R0006 NC_015385.1 463015 464545 D 16S ribosomal RNA 463015..464545 Treponema succinifaciens DSM 2489 10430516 Tresu_R0008 rRNA Tresu_R0008 NC_015385.1 464783 467728 D 23S ribosomal RNA 464783..467728 Treponema succinifaciens DSM 2489 10430518 Tresu_R0009 rRNA Tresu_R0009 NC_015385.1 467775 467884 D 5S ribosomal RNA 467775..467884 Treponema succinifaciens DSM 2489 10430519 Tresu_R0013 rRNA Tresu_R0013 NC_015385.1 973137 974667 D 16S ribosomal RNA 973137..974667 Treponema succinifaciens DSM 2489 10431011 Tresu_R0015 rRNA Tresu_R0015 NC_015385.1 974905 977851 D 23S ribosomal RNA 974905..977851 Treponema succinifaciens DSM 2489 10431013 Tresu_R0016 rRNA Tresu_R0016 NC_015385.1 977898 978007 D 5S ribosomal RNA 977898..978007 Treponema succinifaciens DSM 2489 10431014 Tresu_R0021 rRNA Tresu_R0021 NC_015385.1 1129479 1131009 D 16S ribosomal RNA 1129479..1131009 Treponema succinifaciens DSM 2489 10431170 Tresu_R0023 rRNA Tresu_R0023 NC_015385.1 1131262 1134206 D 23S ribosomal RNA 1131262..1134206 Treponema succinifaciens DSM 2489 10431172 Tresu_R0024 rRNA Tresu_R0024 NC_015385.1 1134253 1134362 D 5S ribosomal RNA 1134253..1134362 Treponema succinifaciens DSM 2489 10431173 Tresu_R0027 rRNA Tresu_R0027 NC_015385.1 1272079 1272187 D 5S ribosomal RNA 1272079..1272187 Treponema succinifaciens DSM 2489 10431298 Tresu_R0052 rRNA Tresu_R0052 NC_015385.1 2531239 2531348 R 5S ribosomal RNA complement(2531239..2531348) Treponema succinifaciens DSM 2489 10432500 Tresu_R0053 rRNA Tresu_R0053 NC_015385.1 2531395 2534339 R 23S ribosomal RNA complement(2531395..2534339) Treponema succinifaciens DSM 2489 10432501 Tresu_R0055 rRNA Tresu_R0055 NC_015385.1 2534592 2536122 R 16S ribosomal RNA complement(2534592..2536122) Treponema succinifaciens DSM 2489 10432503