; oligo-analysis  -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Tribolium_castaneum.Tcas3.34/genome/Tribolium_castaneum.Tcas3.34_start_codons.wc -o $RSAT/public_html/data/genomes/Tribolium_castaneum.Tcas3.34/genome/Tribolium_castaneum.Tcas3.34_start_codon_frequencies
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Slow counting mode           
; Oligomer length              	3
; Input file                   	$RSAT/public_html/data/genomes/Tribolium_castaneum.Tcas3.34/genome/Tribolium_castaneum.Tcas3.34_start_codons.wc
; Input format                 	wc
; Output file                  	$RSAT/public_html/data/genomes/Tribolium_castaneum.Tcas3.34/genome/Tribolium_castaneum.Tcas3.34_start_codon_frequencies
; Count overlapping matches
; Counted on a single strand
; Background model             	Bernoulli
; Background estimation method 	
; Sequence type                	DNA
; Nb of sequences              	16445
; Sum of sequence lengths      	49335
; discarded residues           		 (other letters than ACGT)
; discarded occurrences        		 (contain discarded residues)
; nb possible positions        	16445
; total oligo occurrences      	16445
; alphabet size                	4
; nb possible oligomers        	64
; oligomers tested for significance	0
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	obs_freq       	observed relative frequency
;	4	occ            	observed occurrences
#seq	id	obs_freq	occ
atg	atg	0.9992702949225	16433
agt	agt	0.0001824262694	3
ctg	ctg	0.0001216175129	2
tgt	tgt	0.0000608087565	1
tgg	tgg	0.0000608087565	1
tga	tga	0.0000608087565	1
gag	gag	0.0000608087565	1
gcg	gcg	0.0000608087565	1
gtt	gtt	0.0000608087565	1
gcc	gcc	0.0000608087565	1
; Host name	n95
; Job started	2017-02-26.203358
; Job done	2017-02-26.203359
; Seconds	0.46
;	user	0.46
;	system	0.01
;	cuser	0
;	csystem	0