-- dump date 20111121_015448 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 505682000001 SEQ_END SEQ_END NC_010503.1 751679 751679 DR NC_010503.1; contig end 751679..751679 Ureaplasma parvum serovar 3 str. ATCC 27815 YP_001752081.1 CDS dnaA NC_010503.1 27 1400 D identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 27..1400 Ureaplasma parvum serovar 3 str. ATCC 27815 6155598 YP_001752082.1 CDS rpmE NC_010503.1 1541 1828 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1541..1828 Ureaplasma parvum serovar 3 str. ATCC 27815 6155613 YP_001752083.1 CDS prfA NC_010503.1 1961 3040 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1961..3040 Ureaplasma parvum serovar 3 str. ATCC 27815 6155647 YP_001752084.1 CDS UPA3_0004 NC_010503.1 3040 3912 D identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family methyltransferase 3040..3912 Ureaplasma parvum serovar 3 str. ATCC 27815 6155216 YP_001752085.1 CDS UPA3_0005 NC_010503.1 3899 4453 D hypothetical protein 3899..4453 Ureaplasma parvum serovar 3 str. ATCC 27815 6155717 YP_001752086.1 CDS UPA3_0006 NC_010503.1 4457 4921 D identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; RpiB/LacA/LacB family sugar-phosphate isomerase 4457..4921 Ureaplasma parvum serovar 3 str. ATCC 27815 6155509 YP_001752087.1 CDS UPA3_0007 NC_010503.1 5017 5577 D hypothetical protein 5017..5577 Ureaplasma parvum serovar 3 str. ATCC 27815 6155170 YP_001752088.1 CDS UPA3_0008 NC_010503.1 5580 6056 D hypothetical protein 5580..6056 Ureaplasma parvum serovar 3 str. ATCC 27815 6155343 YP_001752089.1 CDS mgtE NC_010503.1 6201 7823 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 6201..7823 Ureaplasma parvum serovar 3 str. ATCC 27815 6155649 YP_001752090.1 CDS rplJ NC_010503.1 7980 8480 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 7980..8480 Ureaplasma parvum serovar 3 str. ATCC 27815 6155658 YP_001752091.1 CDS rplL NC_010503.1 8505 8870 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 8505..8870 Ureaplasma parvum serovar 3 str. ATCC 27815 6155266 YP_001752092.1 CDS UPA3_0012 NC_010503.1 9095 10645 R identified by match to protein family HMM PF02608; hypothetical protein complement(9095..10645) Ureaplasma parvum serovar 3 str. ATCC 27815 6155330 YP_001752093.1 CDS UPA3_0013 NC_010503.1 11031 11960 R identified by match to protein family HMM PF02653; ribose/galactose ABC transporter complement(11031..11960) Ureaplasma parvum serovar 3 str. ATCC 27815 6155140 YP_001752094.1 CDS UPA3_0014 NC_010503.1 11960 14170 R identified by match to protein family HMM PF02653; ribose/galactose ABC transporter complement(11960..14170) Ureaplasma parvum serovar 3 str. ATCC 27815 6155530 YP_001752095.1 CDS UPA3_0015 NC_010503.1 14173 15780 R identified by match to protein family HMM PF00005; methylgalactoside permease ATP-binding protein complement(14173..15780) Ureaplasma parvum serovar 3 str. ATCC 27815 6155727 YP_001752096.1 CDS UPA3_0016 NC_010503.1 15836 17410 R identified by match to protein family HMM PF02608; hypothetical protein complement(15836..17410) Ureaplasma parvum serovar 3 str. ATCC 27815 6155297 YP_001752097.1 CDS UPA3_0017 NC_010503.1 17581 18378 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase complement(17581..18378) Ureaplasma parvum serovar 3 str. ATCC 27815 6155169 YP_001752098.1 CDS trmE NC_010503.1 18380 19696 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(18380..19696) Ureaplasma parvum serovar 3 str. ATCC 27815 6155399 YP_001752099.1 CDS UPA3_0019 NC_010503.1 19699 20493 R DNA polymerase III delta subunit complement(19699..20493) Ureaplasma parvum serovar 3 str. ATCC 27815 6155646 YP_001752100.1 CDS tmk NC_010503.1 20494 21186 R identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase complement(20494..21186) Ureaplasma parvum serovar 3 str. ATCC 27815 6155253 YP_001752101.1 CDS UPA3_0021 NC_010503.1 21167 22030 R identified by match to protein family HMM PF00561; triacylglycerol lipase complement(21167..22030) Ureaplasma parvum serovar 3 str. ATCC 27815 6155120 YP_001752102.1 CDS UPA3_0022 NC_010503.1 22136 23158 R identified by match to protein family HMM PF01032; ferrichrome ABC transporter complement(22136..23158) Ureaplasma parvum serovar 3 str. ATCC 27815 6155222 YP_001752103.1 CDS UPA3_0023 NC_010503.1 23159 24172 R identified by match to protein family HMM PF01032; ferrichrome ABC transporter complement(23159..24172) Ureaplasma parvum serovar 3 str. ATCC 27815 6155676 YP_001752104.1 CDS UPA3_0024 NC_010503.1 24201 25601 R putative ABC substrate-binding protein - iron complement(24201..25601) Ureaplasma parvum serovar 3 str. ATCC 27815 6155551 YP_001752105.1 CDS UPA3_0025 NC_010503.1 25637 26740 R identified by match to protein family HMM PF01032; ferrichrome ABC transporter complement(25637..26740) Ureaplasma parvum serovar 3 str. ATCC 27815 6155194 YP_001752106.1 CDS rpsB NC_010503.1 26907 27956 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(26907..27956) Ureaplasma parvum serovar 3 str. ATCC 27815 6155398 YP_001752107.1 CDS UPA3_0027 NC_010503.1 28056 29027 R putative ABC substrate-binding protein - iron complement(28056..29027) Ureaplasma parvum serovar 3 str. ATCC 27815 6155182 YP_001752108.1 CDS UPA3_0028 NC_010503.1 29042 29788 R putative ABC substrate-binding protein - iron complement(29042..29788) Ureaplasma parvum serovar 3 str. ATCC 27815 6155496 YP_001752109.1 CDS UPA3_0029 NC_010503.1 29794 31914 R identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein complement(29794..31914) Ureaplasma parvum serovar 3 str. ATCC 27815 6155233 YP_001752110.1 CDS UPA3_0030 NC_010503.1 32024 34267 D hypothetical protein 32024..34267 Ureaplasma parvum serovar 3 str. ATCC 27815 6155267 YP_001752111.1 CDS UPA3_0031 NC_010503.1 34662 35426 D hypothetical protein 34662..35426 Ureaplasma parvum serovar 3 str. ATCC 27815 6155383 YP_001752112.1 CDS UPA3_0032 NC_010503.1 35518 36045 R hypothetical protein complement(35518..36045) Ureaplasma parvum serovar 3 str. ATCC 27815 6155525 YP_001752113.1 CDS UPA3_0033 NC_010503.1 36053 36526 R hypothetical protein complement(36053..36526) Ureaplasma parvum serovar 3 str. ATCC 27815 6155145 YP_001752114.1 CDS UPA3_0034 NC_010503.1 36576 37643 R identified by match to protein family HMM PF04326; AAA domain-contain protein complement(36576..37643) Ureaplasma parvum serovar 3 str. ATCC 27815 6155359 YP_001752115.1 CDS UPA3_0035 NC_010503.1 37747 38487 R hypothetical protein complement(37747..38487) Ureaplasma parvum serovar 3 str. ATCC 27815 6155744 YP_001752116.1 CDS UPA3_0036 NC_010503.1 38740 39573 R hypothetical protein complement(38740..39573) Ureaplasma parvum serovar 3 str. ATCC 27815 6155348 YP_001752117.1 CDS UPA3_0037 NC_010503.1 40361 41749 D identified by match to protein family HMM PF04326; match to protein family HMM PF08220; AAA domain-contain protein 40361..41749 Ureaplasma parvum serovar 3 str. ATCC 27815 6155294 YP_001752118.1 CDS gidA NC_010503.1 41825 43669 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 41825..43669 Ureaplasma parvum serovar 3 str. ATCC 27815 6155549 YP_001752119.1 CDS gidB NC_010503.1 43662 44372 D identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; methyltransferase GidB 43662..44372 Ureaplasma parvum serovar 3 str. ATCC 27815 6155123 YP_001752120.1 CDS UPA3_0040 NC_010503.1 44395 44757 D identified by match to protein family HMM PF04193; PQ loop repeat-containing protein 44395..44757 Ureaplasma parvum serovar 3 str. ATCC 27815 6155143 YP_001752121.1 CDS UPA3_0041 NC_010503.1 44757 45173 D hypothetical protein 44757..45173 Ureaplasma parvum serovar 3 str. ATCC 27815 6155519 YP_001752122.1 CDS UPA3_0042 NC_010503.1 45340 47856 D lipoprotein 45340..47856 Ureaplasma parvum serovar 3 str. ATCC 27815 6155554 YP_001752123.1 CDS UPA3_0043 NC_010503.1 47879 50227 D hypothetical protein 47879..50227 Ureaplasma parvum serovar 3 str. ATCC 27815 6155325 YP_001752124.1 CDS UPA3_0044 NC_010503.1 50258 52762 D identified by match to protein family HMM PF04200; putative lipoprotein 50258..52762 Ureaplasma parvum serovar 3 str. ATCC 27815 6155506 YP_001752125.1 CDS UPA3_0045 NC_010503.1 52799 55174 D hypothetical protein 52799..55174 Ureaplasma parvum serovar 3 str. ATCC 27815 6155328 YP_001752126.1 CDS UPA3_0046 NC_010503.1 55189 57792 D putative lipoprotein 55189..57792 Ureaplasma parvum serovar 3 str. ATCC 27815 6155601 YP_001752127.1 CDS UPA3_0047 NC_010503.1 57825 59312 D hypothetical protein 57825..59312 Ureaplasma parvum serovar 3 str. ATCC 27815 6155635 YP_001752128.1 CDS UPA3_0048 NC_010503.1 59299 59814 D hypothetical protein 59299..59814 Ureaplasma parvum serovar 3 str. ATCC 27815 6155337 YP_001752129.1 CDS UPA3_0049 NC_010503.1 59817 60731 D hypothetical protein 59817..60731 Ureaplasma parvum serovar 3 str. ATCC 27815 6155287 YP_001752130.1 CDS UPA3_0050 NC_010503.1 60721 61200 D hypothetical protein 60721..61200 Ureaplasma parvum serovar 3 str. ATCC 27815 6155511 YP_001752131.1 CDS UPA3_0051 NC_010503.1 61190 63355 D hypothetical protein 61190..63355 Ureaplasma parvum serovar 3 str. ATCC 27815 6155254 YP_001752132.1 CDS UPA3_0052 NC_010503.1 63371 64906 D ATPase subunit alpha 2; ATP synthase F1 sector subunit alpha 2; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 63371..64906 Ureaplasma parvum serovar 3 str. ATCC 27815 6155648 YP_001752133.1 CDS UPA3_0053 NC_010503.1 64906 66270 D produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 64906..66270 Ureaplasma parvum serovar 3 str. ATCC 27815 6155607 YP_001752134.1 CDS UPA3_0054 NC_010503.1 66535 69951 D identified by match to protein family HMM PF03372; hypothetical protein 66535..69951 Ureaplasma parvum serovar 3 str. ATCC 27815 6155457 YP_001752135.1 CDS secG NC_010503.1 70046 70270 D identified by similarity to SP:Q9EXD0; preprotein translocase subunit SecG 70046..70270 Ureaplasma parvum serovar 3 str. ATCC 27815 6155517 YP_001752136.1 CDS rnr NC_010503.1 70271 72436 D identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 70271..72436 Ureaplasma parvum serovar 3 str. ATCC 27815 6155433 YP_001752137.1 CDS smpB NC_010503.1 72636 73061 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 72636..73061 Ureaplasma parvum serovar 3 str. ATCC 27815 6155673 YP_001752138.1 CDS UPA3_0058 NC_010503.1 73081 74820 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; transport ATP-binding protein 73081..74820 Ureaplasma parvum serovar 3 str. ATCC 27815 6155310 YP_001752139.1 CDS UPA3_0059 NC_010503.1 74795 76591 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; transport ATP-binding protein 74795..76591 Ureaplasma parvum serovar 3 str. ATCC 27815 6155591 YP_001752140.1 CDS UPA3_0060 NC_010503.1 76651 77445 D hypothetical protein 76651..77445 Ureaplasma parvum serovar 3 str. ATCC 27815 6155481 YP_001752141.1 CDS lysS NC_010503.1 77555 79036 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 77555..79036 Ureaplasma parvum serovar 3 str. ATCC 27815 6155212 YP_001752142.1 CDS UPA3_0062 NC_010503.1 79324 79800 R identified by match to protein family HMM PF05014; nucleoside 2-deoxyribosyltransferase superfamily protein complement(79324..79800) Ureaplasma parvum serovar 3 str. ATCC 27815 6155379 YP_001752143.1 CDS UPA3_0063 NC_010503.1 79968 80234 R hypothetical protein complement(79968..80234) Ureaplasma parvum serovar 3 str. ATCC 27815 6155474 YP_001752144.1 CDS pepF1 NC_010503.1 80259 82085 R identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase F complement(80259..82085) Ureaplasma parvum serovar 3 str. ATCC 27815 6155735 YP_001752145.1 CDS UPA3_0065 NC_010503.1 82173 83054 D identified by match to protein family HMM PF01515; phosphotransacetylase 82173..83054 Ureaplasma parvum serovar 3 str. ATCC 27815 6155428 YP_001752146.1 CDS UPA3_0066 NC_010503.1 83101 83715 R hypothetical protein complement(83101..83715) Ureaplasma parvum serovar 3 str. ATCC 27815 6155362 YP_001752147.1 CDS UPA3_0067 NC_010503.1 83753 84409 R hypothetical protein complement(83753..84409) Ureaplasma parvum serovar 3 str. ATCC 27815 6155128 YP_001752148.1 CDS UPA3_0068 NC_010503.1 84500 85375 R identified by match to protein family HMM PF00005; iron(III) dicitrate transport ATP-binding protein fecE complement(84500..85375) Ureaplasma parvum serovar 3 str. ATCC 27815 6155226 YP_001752149.1 CDS UPA3_0069 NC_010503.1 85380 86450 R identified by match to protein family HMM PF00950; match to protein family HMM PF01032; hemin transport system permease complement(85380..86450) Ureaplasma parvum serovar 3 str. ATCC 27815 6155213 YP_001752150.1 CDS UPA3_0070 NC_010503.1 86469 88436 R putative ABC substrate-binding protein - iron complement(86469..88436) Ureaplasma parvum serovar 3 str. ATCC 27815 6155274 YP_001752151.1 CDS UPA3_0071 NC_010503.1 88669 89997 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; hemolysin 88669..89997 Ureaplasma parvum serovar 3 str. ATCC 27815 6155124 YP_001752152.1 CDS UPA3_0072 NC_010503.1 90015 91007 R identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein complement(90015..91007) Ureaplasma parvum serovar 3 str. ATCC 27815 6155633 YP_001752153.1 CDS trxB NC_010503.1 90973 91902 R identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; thioredoxin-disulfide reductase complement(90973..91902) Ureaplasma parvum serovar 3 str. ATCC 27815 6155386 YP_001752154.1 CDS lgt NC_010503.1 91921 92928 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(91921..92928) Ureaplasma parvum serovar 3 str. ATCC 27815 6155203 YP_001752155.1 CDS hprK NC_010503.1 92929 93855 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(92929..93855) Ureaplasma parvum serovar 3 str. ATCC 27815 6155188 YP_001752156.1 CDS tilS NC_010503.1 93870 94862 R identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthetase complement(93870..94862) Ureaplasma parvum serovar 3 str. ATCC 27815 6155605 YP_001752157.1 CDS pth NC_010503.1 94834 95394 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(94834..95394) Ureaplasma parvum serovar 3 str. ATCC 27815 6155417 YP_001752158.1 CDS dnaN NC_010503.1 95616 96755 D identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III, beta subunit 95616..96755 Ureaplasma parvum serovar 3 str. ATCC 27815 6155119 YP_001752159.1 CDS yaaA NC_010503.1 96893 97111 D identified by match to protein family HMM TIGR02988; S4 domain-containing protein YaaA 96893..97111 Ureaplasma parvum serovar 3 str. ATCC 27815 6155526 YP_001752160.1 CDS gyrB NC_010503.1 97123 99075 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 97123..99075 Ureaplasma parvum serovar 3 str. ATCC 27815 6155250 YP_001752161.1 CDS gyrA NC_010503.1 99097 101619 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 99097..101619 Ureaplasma parvum serovar 3 str. ATCC 27815 6155114 YP_001752162.1 CDS UPA3_0082 NC_010503.1 101727 102197 D identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage inducible protein CinA 101727..102197 Ureaplasma parvum serovar 3 str. ATCC 27815 6155459 YP_001752163.1 CDS recA NC_010503.1 102236 103240 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 102236..103240 Ureaplasma parvum serovar 3 str. ATCC 27815 6155351 YP_001752164.1 CDS UPA3_0084 NC_010503.1 103272 104693 D identified by match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277; hypothetical protein 103272..104693 Ureaplasma parvum serovar 3 str. ATCC 27815 6155662 YP_001752165.1 CDS UPA3_0085 NC_010503.1 104720 104875 R identified by glimmer; putative; hypothetical protein complement(104720..104875) Ureaplasma parvum serovar 3 str. ATCC 27815 6155427 YP_001752166.1 CDS UPA3_0086 NC_010503.1 104892 105590 R deoxyguanosine kinase complement(104892..105590) Ureaplasma parvum serovar 3 str. ATCC 27815 6155489 YP_001752167.1 CDS UPA3_0087 NC_010503.1 105788 107581 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 105788..107581 Ureaplasma parvum serovar 3 str. ATCC 27815 6155640 YP_001752168.1 CDS UPA3_0088 NC_010503.1 107589 107888 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 107589..107888 Ureaplasma parvum serovar 3 str. ATCC 27815 6155632 YP_001752169.1 CDS recR NC_010503.1 107897 108502 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 107897..108502 Ureaplasma parvum serovar 3 str. ATCC 27815 6155160 YP_001752170.1 CDS UPA3_0090 NC_010503.1 108584 108826 D hypothetical protein 108584..108826 Ureaplasma parvum serovar 3 str. ATCC 27815 6155276 YP_001752171.1 CDS UPA3_0091 NC_010503.1 108923 110626 D identified by match to protein family HMM PF03235; hypothetical protein 108923..110626 Ureaplasma parvum serovar 3 str. ATCC 27815 6155540 YP_001752172.1 CDS ffh NC_010503.1 111242 112588 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 111242..112588 Ureaplasma parvum serovar 3 str. ATCC 27815 6155700 YP_001752173.1 CDS UPA3_0093 NC_010503.1 112800 114587 D hypothetical protein 112800..114587 Ureaplasma parvum serovar 3 str. ATCC 27815 6155643 YP_001752174.1 CDS UPA3_0094 NC_010503.1 114587 115297 D identified by match to protein family HMM PF00005; ABC transporter 114587..115297 Ureaplasma parvum serovar 3 str. ATCC 27815 6155322 YP_001752175.1 CDS UPA3_0095 NC_010503.1 115419 118583 D putative lipoprotein 115419..118583 Ureaplasma parvum serovar 3 str. ATCC 27815 6155616 YP_001752176.1 CDS UPA3_0096 NC_010503.1 118730 118858 R identified by glimmer; putative; hypothetical protein complement(118730..118858) Ureaplasma parvum serovar 3 str. ATCC 27815 6155431 YP_001752177.1 CDS UPA3_0097 NC_010503.1 118970 119119 R identified by similarity to GB:ABC77917.1; hypothetical protein complement(118970..119119) Ureaplasma parvum serovar 3 str. ATCC 27815 6155125 YP_001752178.1 CDS hsdR NC_010503.1 120188 123325 R identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I site-specific deoxyribonuclease, HsdR complement(120188..123325) Ureaplasma parvum serovar 3 str. ATCC 27815 6155263 YP_001752179.1 CDS UPA3_0099 NC_010503.1 123346 123867 R identified by match to protein family HMM PF01420; type I restriction modification DNA specificity family protein complement(123346..123867) Ureaplasma parvum serovar 3 str. ATCC 27815 6155538 YP_001752180.1 CDS UPA3_0100 NC_010503.1 124005 124214 R identified by similarity to GB:AAT27773.1; hypothetical protein complement(124005..124214) Ureaplasma parvum serovar 3 str. ATCC 27815 6155166 YP_001752181.1 CDS hsdM NC_010503.1 124347 125393 D identified by match to protein family HMM PF02384; type I restriction-modification system, M subunit 124347..125393 Ureaplasma parvum serovar 3 str. ATCC 27815 6155491 YP_001752182.1 CDS UPA3_0102 NC_010503.1 125397 126302 D identified by match to protein family HMM PF01420; type I restriction modification DNA specificity family protein 125397..126302 Ureaplasma parvum serovar 3 str. ATCC 27815 6155363 YP_001752183.1 CDS UPA3_0103 NC_010503.1 126341 126904 D hypothetical protein 126341..126904 Ureaplasma parvum serovar 3 str. ATCC 27815 6155477 YP_001752184.1 CDS UPA3_0104 NC_010503.1 126942 127508 R hypothetical protein complement(126942..127508) Ureaplasma parvum serovar 3 str. ATCC 27815 6155452 YP_001752185.1 CDS uvrA NC_010503.1 127734 130565 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 127734..130565 Ureaplasma parvum serovar 3 str. ATCC 27815 6155149 YP_001752186.1 CDS UPA3_0106 NC_010503.1 130570 132234 D putative lipoprotein 130570..132234 Ureaplasma parvum serovar 3 str. ATCC 27815 6155190 YP_001752187.1 CDS hpt NC_010503.1 132261 132881 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 132261..132881 Ureaplasma parvum serovar 3 str. ATCC 27815 6155303 YP_001752188.1 CDS UPA3_0108 NC_010503.1 132886 135051 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent zinc metallopeptidase - cell division protein 132886..135051 Ureaplasma parvum serovar 3 str. ATCC 27815 6155284 YP_001752189.1 CDS serS NC_010503.1 135162 136418 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 135162..136418 Ureaplasma parvum serovar 3 str. ATCC 27815 6155179 YP_001752190.1 CDS UPA3_0110 NC_010503.1 136821 138380 D identified by match to protein family HMM PF00005; match to protein family HMM PF08402; spermidine/putrescine transport ATP-binding protein 136821..138380 Ureaplasma parvum serovar 3 str. ATCC 27815 6155581 YP_001752191.1 CDS UPA3_0111 NC_010503.1 138364 139371 D identified by match to protein family HMM PF00528; spermidine/putrescine transport system permease 138364..139371 Ureaplasma parvum serovar 3 str. ATCC 27815 6155217 YP_001752192.1 CDS UPA3_0112 NC_010503.1 139358 140212 D identified by match to protein family HMM PF00528; spermidine/putrescine transport system permease 139358..140212 Ureaplasma parvum serovar 3 str. ATCC 27815 6155718 YP_001752193.1 CDS UPA3_0113 NC_010503.1 140216 142252 D identified by match to protein family HMM PF02030; putative lipoprotein 140216..142252 Ureaplasma parvum serovar 3 str. ATCC 27815 6155313 YP_001752194.1 CDS UPA3_0114 NC_010503.1 142350 142952 D hypothetical protein 142350..142952 Ureaplasma parvum serovar 3 str. ATCC 27815 6155510 YP_001752195.1 CDS UPA3_0115 NC_010503.1 143015 144142 D hypothetical protein 143015..144142 Ureaplasma parvum serovar 3 str. ATCC 27815 6155730 YP_001752196.1 CDS UPA3_0116 NC_010503.1 144166 145113 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; pseudouridine synthase 144166..145113 Ureaplasma parvum serovar 3 str. ATCC 27815 6155252 YP_001752197.1 CDS folA NC_010503.1 150399 150869 D identified by match to protein family HMM PF00186; dihydrofolate reductase 150399..150869 Ureaplasma parvum serovar 3 str. ATCC 27815 6155206 YP_001752198.1 CDS UPA3_0120 NC_010503.1 150877 151557 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 150877..151557 Ureaplasma parvum serovar 3 str. ATCC 27815 6155672 YP_001752199.1 CDS upp NC_010503.1 151752 152375 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(151752..152375) Ureaplasma parvum serovar 3 str. ATCC 27815 6155393 YP_001752200.1 CDS tyrS NC_010503.1 152620 153867 R identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase complement(152620..153867) Ureaplasma parvum serovar 3 str. ATCC 27815 6155599 YP_001752201.1 CDS UPA3_0124 NC_010503.1 154006 154908 D identified by match to protein family HMM PF00005; ABC transporter 154006..154908 Ureaplasma parvum serovar 3 str. ATCC 27815 6155411 YP_001752202.1 CDS secA NC_010503.1 154925 157438 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 154925..157438 Ureaplasma parvum serovar 3 str. ATCC 27815 6155626 YP_001752203.1 CDS uvrB NC_010503.1 157441 159441 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 157441..159441 Ureaplasma parvum serovar 3 str. ATCC 27815 6155197 YP_001752204.1 CDS ligA NC_010503.1 159525 161546 D identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase, NAD-dependent 159525..161546 Ureaplasma parvum serovar 3 str. ATCC 27815 6155490 YP_001752205.1 CDS UPA3_0128 NC_010503.1 161783 162478 D hypothetical protein 161783..162478 Ureaplasma parvum serovar 3 str. ATCC 27815 6155674 YP_001752206.1 CDS cysS NC_010503.1 162492 163802 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 162492..163802 Ureaplasma parvum serovar 3 str. ATCC 27815 6155258 YP_001752207.1 CDS UPA3_0130 NC_010503.1 163804 164523 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 163804..164523 Ureaplasma parvum serovar 3 str. ATCC 27815 6155394 YP_001752208.1 CDS UPA3_0131 NC_010503.1 164532 165716 R putative lipoprotein complement(164532..165716) Ureaplasma parvum serovar 3 str. ATCC 27815 6155184 YP_001752209.1 CDS UPA3_0132 NC_010503.1 165728 168982 R hypothetical protein complement(165728..168982) Ureaplasma parvum serovar 3 str. ATCC 27815 6155500 YP_001752210.1 CDS UPA3_0133 NC_010503.1 169109 169414 R hypothetical protein complement(169109..169414) Ureaplasma parvum serovar 3 str. ATCC 27815 6155312 YP_001752211.1 CDS atpC NC_010503.1 169557 169967 R identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1, epsilon subunit complement(169557..169967) Ureaplasma parvum serovar 3 str. ATCC 27815 6155240 YP_001752212.1 CDS atpD NC_010503.1 169967 171361 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(169967..171361) Ureaplasma parvum serovar 3 str. ATCC 27815 6155453 YP_001752213.1 CDS atpG NC_010503.1 171388 172248 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(171388..172248) Ureaplasma parvum serovar 3 str. ATCC 27815 6155230 YP_001752214.1 CDS UPA3_0137 NC_010503.1 172250 173056 R hypothetical protein complement(172250..173056) Ureaplasma parvum serovar 3 str. ATCC 27815 6155470 YP_001752215.1 CDS UPA3_0138 NC_010503.1 173056 175455 R identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962; ATP synthase F1, alpha subunit complement(173056..175455) Ureaplasma parvum serovar 3 str. ATCC 27815 6155384 YP_001752216.1 CDS UPA3_0139 NC_010503.1 175458 175757 R ATP synthase delta subunit complement(175458..175757) Ureaplasma parvum serovar 3 str. ATCC 27815 6155342 YP_001752217.1 CDS atpH NC_010503.1 175767 176306 R identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1, delta subunit complement(175767..176306) Ureaplasma parvum serovar 3 str. ATCC 27815 6155406 YP_001752218.1 CDS atpF NC_010503.1 176310 176927 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(176310..176927) Ureaplasma parvum serovar 3 str. ATCC 27815 6155724 YP_001752219.1 CDS UPA3_0142 NC_010503.1 176996 177325 R identified by match to protein family HMM PF00137; ATP synthase F0, C subunit complement(176996..177325) Ureaplasma parvum serovar 3 str. ATCC 27815 6155108 YP_001752220.1 CDS atpB NC_010503.1 177374 178201 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(177374..178201) Ureaplasma parvum serovar 3 str. ATCC 27815 6155269 YP_001752221.1 CDS UPA3_0144 NC_010503.1 178227 178601 R hypothetical protein complement(178227..178601) Ureaplasma parvum serovar 3 str. ATCC 27815 6155527 YP_001752222.1 CDS UPA3_0145 NC_010503.1 178899 179609 D hypothetical protein 178899..179609 Ureaplasma parvum serovar 3 str. ATCC 27815 6155365 YP_001752223.1 CDS UPA3_0146 NC_010503.1 179671 182616 D identified by match to protein family HMM PF02463; match to protein family HMM PF06470; p115 protein 179671..182616 Ureaplasma parvum serovar 3 str. ATCC 27815 6155722 YP_001752224.1 CDS ftsY NC_010503.1 182619 183674 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 182619..183674 Ureaplasma parvum serovar 3 str. ATCC 27815 6155224 YP_001752225.1 CDS UPA3_0148 NC_010503.1 183664 183963 D identified by match to protein family HMM PF04297; putative DNA-binding protein 183664..183963 Ureaplasma parvum serovar 3 str. ATCC 27815 6155612 YP_001752226.1 CDS UPA3_0149 NC_010503.1 184067 187834 R hypothetical protein complement(184067..187834) Ureaplasma parvum serovar 3 str. ATCC 27815 6155707 YP_001752227.1 CDS UPA3_0152 NC_010503.1 188328 189002 R hypothetical protein complement(188328..189002) Ureaplasma parvum serovar 3 str. ATCC 27815 6155743 YP_001752228.1 CDS UPA3_0153 NC_010503.1 189063 189830 D identified by match to protein family HMM PF00589; integrase-recombinase protein 189063..189830 Ureaplasma parvum serovar 3 str. ATCC 27815 6155157 YP_001752229.1 CDS UPA3_0154 NC_010503.1 189820 190446 D hypothetical protein 189820..190446 Ureaplasma parvum serovar 3 str. ATCC 27815 6155471 YP_001752230.1 CDS UPA3_0155 NC_010503.1 190430 190603 D hypothetical protein 190430..190603 Ureaplasma parvum serovar 3 str. ATCC 27815 6155372 YP_001752231.1 CDS UPA3_0156 NC_010503.1 190605 190946 D hypothetical protein 190605..190946 Ureaplasma parvum serovar 3 str. ATCC 27815 6155390 YP_001752232.1 CDS UPA3_0157 NC_010503.1 190952 191248 D hypothetical protein 190952..191248 Ureaplasma parvum serovar 3 str. ATCC 27815 6155451 YP_001752233.1 CDS UPA3_0158 NC_010503.1 191270 191491 D hypothetical protein 191270..191491 Ureaplasma parvum serovar 3 str. ATCC 27815 6155464 YP_001752234.1 CDS UPA3_0159 NC_010503.1 191448 191630 D hypothetical protein 191448..191630 Ureaplasma parvum serovar 3 str. ATCC 27815 6155571 YP_001752235.1 CDS UPA3_0160 NC_010503.1 191623 191859 D hypothetical protein 191623..191859 Ureaplasma parvum serovar 3 str. ATCC 27815 6155485 YP_001752236.1 CDS UPA3_0161 NC_010503.1 191849 192184 D hypothetical protein 191849..192184 Ureaplasma parvum serovar 3 str. ATCC 27815 6155309 YP_001752237.1 CDS bet NC_010503.1 192184 192840 D identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913; phage recombination protein Bet 192184..192840 Ureaplasma parvum serovar 3 str. ATCC 27815 6155741 YP_001752238.1 CDS UPA3_0163 NC_010503.1 192830 193519 D hypothetical protein 192830..193519 Ureaplasma parvum serovar 3 str. ATCC 27815 6155703 YP_001752239.1 CDS UPA3_0164 NC_010503.1 193509 193970 D hypothetical protein 193509..193970 Ureaplasma parvum serovar 3 str. ATCC 27815 6155214 YP_001752240.1 CDS UPA3_0165 NC_010503.1 193952 194629 D hypothetical protein 193952..194629 Ureaplasma parvum serovar 3 str. ATCC 27815 6155600 YP_001752241.1 CDS UPA3_0166 NC_010503.1 195533 195976 R hypothetical protein complement(195533..195976) Ureaplasma parvum serovar 3 str. ATCC 27815 6155680 YP_001752242.1 CDS UPA3_0167 NC_010503.1 195945 196490 R hypothetical protein complement(195945..196490) Ureaplasma parvum serovar 3 str. ATCC 27815 6155475 YP_001752243.1 CDS UPA3_0168 NC_010503.1 196480 196926 R identified by glimmer; putative; hypothetical protein complement(196480..196926) Ureaplasma parvum serovar 3 str. ATCC 27815 6155476 YP_001752244.1 CDS UPA3_0169 NC_010503.1 196931 199174 R hypothetical protein complement(196931..199174) Ureaplasma parvum serovar 3 str. ATCC 27815 6155531 YP_001752245.1 CDS UPA3_0170 NC_010503.1 199174 199851 R identified by glimmer; putative; hypothetical protein complement(199174..199851) Ureaplasma parvum serovar 3 str. ATCC 27815 6155429 YP_001752246.1 CDS UPA3_0171 NC_010503.1 200012 201199 R hypothetical protein complement(200012..201199) Ureaplasma parvum serovar 3 str. ATCC 27815 6155219 YP_001752247.1 CDS UPA3_0172 NC_010503.1 201215 201541 R identified by glimmer; putative; hypothetical protein complement(201215..201541) Ureaplasma parvum serovar 3 str. ATCC 27815 6155687 YP_001752248.1 CDS UPA3_0173 NC_010503.1 201544 201912 R hypothetical protein complement(201544..201912) Ureaplasma parvum serovar 3 str. ATCC 27815 6155376 YP_001752249.1 CDS UPA3_0174 NC_010503.1 201923 205405 R hypothetical protein complement(201923..205405) Ureaplasma parvum serovar 3 str. ATCC 27815 6155107 YP_001752250.1 CDS UPA3_0175 NC_010503.1 205398 206762 R hypothetical protein complement(205398..206762) Ureaplasma parvum serovar 3 str. ATCC 27815 6155671 YP_001752251.1 CDS UPA3_0176 NC_010503.1 206752 208197 R identified by match to protein family HMM PF03237; match to protein family HMM TIGR01547; PBSX family phage terminase large subunit complement(206752..208197) Ureaplasma parvum serovar 3 str. ATCC 27815 6155366 YP_001752252.1 CDS UPA3_0177 NC_010503.1 208554 208997 R hypothetical protein complement(208554..208997) Ureaplasma parvum serovar 3 str. ATCC 27815 6155586 YP_001752253.1 CDS UPA3_0178 NC_010503.1 209441 210040 R hypothetical protein complement(209441..210040) Ureaplasma parvum serovar 3 str. ATCC 27815 6155318 YP_001752254.1 CDS UPA3_0179 NC_010503.1 210417 211916 D putative lipoprotein 210417..211916 Ureaplasma parvum serovar 3 str. ATCC 27815 6155547 YP_001752255.1 CDS UPA3_0180 NC_010503.1 211971 214043 R hypothetical protein complement(211971..214043) Ureaplasma parvum serovar 3 str. ATCC 27815 6155192 YP_001752256.1 CDS UPA3_0181 NC_010503.1 214119 214994 R identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase complement(214119..214994) Ureaplasma parvum serovar 3 str. ATCC 27815 6155308 YP_001752257.1 CDS trpS NC_010503.1 215020 216021 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(215020..216021) Ureaplasma parvum serovar 3 str. ATCC 27815 6155572 YP_001752258.1 CDS UPA3_0183 NC_010503.1 216146 216532 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 216146..216532 Ureaplasma parvum serovar 3 str. ATCC 27815 6155408 YP_001752259.1 CDS UPA3_0184 NC_010503.1 216522 217334 D identified by match to protein family HMM PF01513; NAD(+)/NADH kinase family protein 216522..217334 Ureaplasma parvum serovar 3 str. ATCC 27815 6155439 YP_001752260.1 CDS UPA3_0185 NC_010503.1 217337 217717 D identified by similarity to GB:AAP56894.1; hypothetical protein 217337..217717 Ureaplasma parvum serovar 3 str. ATCC 27815 6155701 YP_001752261.1 CDS UPA3_0186 NC_010503.1 217798 218019 D hypothetical protein 217798..218019 Ureaplasma parvum serovar 3 str. ATCC 27815 6155708 YP_001752262.1 CDS UPA3_0187 NC_010503.1 218021 218500 R identified by similarity to GB:ABP68568.1; match to protein family HMM PF02590; hypothetical protein complement(218021..218500) Ureaplasma parvum serovar 3 str. ATCC 27815 6155630 YP_001752263.1 CDS tpiA NC_010503.1 218563 219279 D identified by match to protein family HMM PF00121; triosephosphate isomerase 218563..219279 Ureaplasma parvum serovar 3 str. ATCC 27815 6155346 YP_001752264.1 CDS gpmI NC_010503.1 219296 220804 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 219296..220804 Ureaplasma parvum serovar 3 str. ATCC 27815 6155355 YP_001752265.1 CDS UPA3_0190 NC_010503.1 220851 221726 D hypothetical protein 220851..221726 Ureaplasma parvum serovar 3 str. ATCC 27815 6155578 YP_001752266.1 CDS eno NC_010503.1 221829 223151 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 221829..223151 Ureaplasma parvum serovar 3 str. ATCC 27815 6155528 YP_001752267.1 CDS UPA3_0192 NC_010503.1 223120 224085 D identified by match to protein family HMM PF00365; phosphofructokinase family protein 223120..224085 Ureaplasma parvum serovar 3 str. ATCC 27815 6155550 YP_001752268.1 CDS pyk NC_010503.1 224097 225521 D identified by match to protein family HMM PF00224; match to protein family HMM TIGR01064; pyruvate kinase 224097..225521 Ureaplasma parvum serovar 3 str. ATCC 27815 6155196 YP_001752269.1 CDS rpoB NC_010503.1 225644 229948 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 225644..229948 Ureaplasma parvum serovar 3 str. ATCC 27815 6155723 YP_001752270.1 CDS rpoC NC_010503.1 229970 233887 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 229970..233887 Ureaplasma parvum serovar 3 str. ATCC 27815 6155395 YP_001752271.1 CDS UPA3_0196 NC_010503.1 234010 234531 D putative lipoprotein 234010..234531 Ureaplasma parvum serovar 3 str. ATCC 27815 6155154 YP_001752272.1 CDS UPA3_0197 NC_010503.1 234605 235459 R identified by match to protein family HMM PF02645; hypothetical protein complement(234605..235459) Ureaplasma parvum serovar 3 str. ATCC 27815 6155377 YP_001752273.1 CDS UPA3_0198 NC_010503.1 235604 236197 D identified by match to protein family HMM PF01588; tRNA-binding domain-containing protein 235604..236197 Ureaplasma parvum serovar 3 str. ATCC 27815 6155558 YP_001752274.1 CDS prs NC_010503.1 236217 237209 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 236217..237209 Ureaplasma parvum serovar 3 str. ATCC 27815 6155711 YP_001752275.1 CDS UPA3_0200 NC_010503.1 237216 237755 D identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase-like protein 237216..237755 Ureaplasma parvum serovar 3 str. ATCC 27815 6155392 YP_001752276.1 CDS UPA3_0201 NC_010503.1 237759 238598 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 237759..238598 Ureaplasma parvum serovar 3 str. ATCC 27815 6155238 YP_001752277.1 CDS UPA3_0202 NC_010503.1 238600 239826 D identified by match to protein family HMM PF00004; match to protein family HMM PF07728; recombination factor protein RarA 238600..239826 Ureaplasma parvum serovar 3 str. ATCC 27815 6155159 YP_001752278.1 CDS metG NC_010503.1 239846 241411 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 239846..241411 Ureaplasma parvum serovar 3 str. ATCC 27815 6155463 YP_001752279.1 CDS UPA3_0204 NC_010503.1 241499 242671 D hypothetical protein 241499..242671 Ureaplasma parvum serovar 3 str. ATCC 27815 6155442 YP_001752280.1 CDS UPA3_0205 NC_010503.1 242671 244866 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate transport system permease 242671..244866 Ureaplasma parvum serovar 3 str. ATCC 27815 6155248 YP_001752281.1 CDS pstB NC_010503.1 244871 245860 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 244871..245860 Ureaplasma parvum serovar 3 str. ATCC 27815 6155494 YP_001752282.1 CDS UPA3_0207 NC_010503.1 245884 246540 D identified by match to protein family HMM PF01895; PhoU family transcriptional regulator 245884..246540 Ureaplasma parvum serovar 3 str. ATCC 27815 6155180 YP_001752283.1 CDS UPA3_0208 NC_010503.1 246700 246924 D hypothetical protein 246700..246924 Ureaplasma parvum serovar 3 str. ATCC 27815 6155146 YP_001752284.1 CDS UPA3_0209 NC_010503.1 246928 249057 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; copper-transporting P-type ATPase 246928..249057 Ureaplasma parvum serovar 3 str. ATCC 27815 6155595 YP_001752285.1 CDS rpsO NC_010503.1 249400 249669 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(249400..249669) Ureaplasma parvum serovar 3 str. ATCC 27815 6155419 YP_001752286.1 CDS rnc NC_010503.1 249780 250490 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(249780..250490) Ureaplasma parvum serovar 3 str. ATCC 27815 6155734 YP_001752287.1 CDS plsX NC_010503.1 250480 251475 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(250480..251475) Ureaplasma parvum serovar 3 str. ATCC 27815 6155684 YP_001752288.1 CDS UPA3_0213 NC_010503.1 251480 253174 R identified by match to protein family HMM PF02734; DAK2 domain-containing protein complement(251480..253174) Ureaplasma parvum serovar 3 str. ATCC 27815 6155497 YP_001752289.1 CDS UPA3_0214 NC_010503.1 253189 253455 R hypothetical protein complement(253189..253455) Ureaplasma parvum serovar 3 str. ATCC 27815 6155501 YP_001752290.1 CDS UPA3_0215 NC_010503.1 253560 254177 R hypothetical protein complement(253560..254177) Ureaplasma parvum serovar 3 str. ATCC 27815 6155664 YP_001752291.1 CDS rpmB NC_010503.1 254296 254490 D required for 70S ribosome assembly; 50S ribosomal protein L28 254296..254490 Ureaplasma parvum serovar 3 str. ATCC 27815 6155556 YP_001752292.1 CDS rpmA NC_010503.1 254913 255215 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(254913..255215) Ureaplasma parvum serovar 3 str. ATCC 27815 6155456 YP_001752293.1 CDS UPA3_0218 NC_010503.1 255221 255529 R identified by match to protein family HMM PF04327; hypothetical protein complement(255221..255529) Ureaplasma parvum serovar 3 str. ATCC 27815 6155502 YP_001752294.1 CDS rplU NC_010503.1 255535 255837 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(255535..255837) Ureaplasma parvum serovar 3 str. ATCC 27815 6155516 YP_001752295.1 CDS gmk NC_010503.1 256155 256730 D identified by match to protein family HMM PF00625; match to protein family HMM TIGR03263; guanylate kinase 256155..256730 Ureaplasma parvum serovar 3 str. ATCC 27815 6155450 YP_001752296.1 CDS UPA3_0221 NC_010503.1 256711 257721 D hypothetical protein 256711..257721 Ureaplasma parvum serovar 3 str. ATCC 27815 6155695 YP_001752297.1 CDS UPA3_0222 NC_010503.1 257725 258468 D identified by match to protein family HMM PF00481; protein phosphatase 257725..258468 Ureaplasma parvum serovar 3 str. ATCC 27815 6155414 YP_001752298.1 CDS UPA3_0223 NC_010503.1 258474 259634 D identified by match to protein family HMM PF00069; serine/threonine kinase 258474..259634 Ureaplasma parvum serovar 3 str. ATCC 27815 6155183 YP_001752299.1 CDS rsgA NC_010503.1 259637 260548 D identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; ribosome small subunit-dependent GTPase A 259637..260548 Ureaplasma parvum serovar 3 str. ATCC 27815 6155410 YP_001752300.1 CDS UPA3_0225 NC_010503.1 260694 262217 D identified by match to protein family HMM PF00909; ammonium transporter 260694..262217 Ureaplasma parvum serovar 3 str. ATCC 27815 6155293 YP_001752301.1 CDS UPA3_0226 NC_010503.1 262391 263947 D identified by match to protein family HMM PF00909; ammonium transporter 262391..263947 Ureaplasma parvum serovar 3 str. ATCC 27815 6155533 YP_001752302.1 CDS UPA3_0227 NC_010503.1 264057 265343 D hypothetical protein 264057..265343 Ureaplasma parvum serovar 3 str. ATCC 27815 6155347 YP_001752303.1 CDS fhs NC_010503.1 265358 266923 D identified by match to protein family HMM PF01268; formate--tetrahydrofolate ligase 265358..266923 Ureaplasma parvum serovar 3 str. ATCC 27815 6155350 YP_001752304.1 CDS UPA3_0229 NC_010503.1 267053 267805 D identified by match to protein family HMM PF00589; tyrosine recombinase XerC 267053..267805 Ureaplasma parvum serovar 3 str. ATCC 27815 6155246 YP_001752305.1 CDS UPA3_0230 NC_010503.1 267924 270365 D identified by match to protein family HMM PF00324; amino acid antiporter 267924..270365 Ureaplasma parvum serovar 3 str. ATCC 27815 6155679 YP_001752306.1 CDS UPA3_0231 NC_010503.1 270543 271691 D putative lipoprotein 270543..271691 Ureaplasma parvum serovar 3 str. ATCC 27815 6155620 YP_001752307.1 CDS UPA3_0232 NC_010503.1 271748 272065 D putative lipoprotein 271748..272065 Ureaplasma parvum serovar 3 str. ATCC 27815 6155210 YP_001752308.1 CDS UPA3_0233 NC_010503.1 272200 272517 D identified by glimmer; putative; hypothetical protein 272200..272517 Ureaplasma parvum serovar 3 str. ATCC 27815 6155566 YP_001752309.1 CDS UPA3_0234 NC_010503.1 272692 274245 D identified by match to protein family HMM PF02608; hypothetical protein 272692..274245 Ureaplasma parvum serovar 3 str. ATCC 27815 6155163 YP_001752310.1 CDS infC NC_010503.1 274443 275006 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 274443..275006 Ureaplasma parvum serovar 3 str. ATCC 27815 6155545 YP_001752311.1 CDS rpmI NC_010503.1 275021 275215 D identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 275021..275215 Ureaplasma parvum serovar 3 str. ATCC 27815 6155185 YP_001752312.1 CDS rplT NC_010503.1 275270 275632 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 275270..275632 Ureaplasma parvum serovar 3 str. ATCC 27815 6155208 YP_001752313.1 CDS rpsJ NC_010503.1 275851 276156 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 275851..276156 Ureaplasma parvum serovar 3 str. ATCC 27815 6155583 YP_001752314.1 CDS rplC NC_010503.1 276181 276882 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 276181..276882 Ureaplasma parvum serovar 3 str. ATCC 27815 6155402 YP_001752315.1 CDS rplD NC_010503.1 276893 277528 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 276893..277528 Ureaplasma parvum serovar 3 str. ATCC 27815 6155116 YP_001752316.1 CDS rplW NC_010503.1 277531 277848 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 277531..277848 Ureaplasma parvum serovar 3 str. ATCC 27815 6155537 YP_001752317.1 CDS rplB NC_010503.1 277902 278741 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 277902..278741 Ureaplasma parvum serovar 3 str. ATCC 27815 6155503 YP_001752318.1 CDS rpsS NC_010503.1 278762 279028 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 278762..279028 Ureaplasma parvum serovar 3 str. ATCC 27815 6155105 YP_001752319.1 CDS UPA3_0244 NC_010503.1 279050 279985 D fusion of L22 and COG4933; 50S ribosomal protein L22/unknown domain fusion protein 279050..279985 Ureaplasma parvum serovar 3 str. ATCC 27815 6155241 YP_001752320.1 CDS rpsC NC_010503.1 280005 280778 D identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; ribosomal protein S3 280005..280778 Ureaplasma parvum serovar 3 str. ATCC 27815 6155281 YP_001752321.1 CDS rplP NC_010503.1 280793 281209 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 280793..281209 Ureaplasma parvum serovar 3 str. ATCC 27815 6155215 YP_001752322.1 CDS rpmC NC_010503.1 281209 281436 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 281209..281436 Ureaplasma parvum serovar 3 str. ATCC 27815 6155699 YP_001752323.1 CDS rpsQ NC_010503.1 281436 281690 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 281436..281690 Ureaplasma parvum serovar 3 str. ATCC 27815 6155444 YP_001752324.1 CDS rplN NC_010503.1 281710 282078 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 281710..282078 Ureaplasma parvum serovar 3 str. ATCC 27815 6155344 YP_001752325.1 CDS rplX NC_010503.1 282093 282425 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 282093..282425 Ureaplasma parvum serovar 3 str. ATCC 27815 6155302 YP_001752326.1 CDS rplE NC_010503.1 282442 282996 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 282442..282996 Ureaplasma parvum serovar 3 str. ATCC 27815 6155155 YP_001752327.1 CDS rpsN NC_010503.1 283000 283185 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 283000..283185 Ureaplasma parvum serovar 3 str. ATCC 27815 6155486 YP_001752328.1 CDS rpsH NC_010503.1 283196 283594 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 283196..283594 Ureaplasma parvum serovar 3 str. ATCC 27815 6155134 YP_001752329.1 CDS rplF NC_010503.1 283603 284151 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 283603..284151 Ureaplasma parvum serovar 3 str. ATCC 27815 6155209 YP_001752330.1 CDS rplR NC_010503.1 284170 284535 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 284170..284535 Ureaplasma parvum serovar 3 str. ATCC 27815 6155404 YP_001752331.1 CDS rpsE NC_010503.1 284553 285164 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 284553..285164 Ureaplasma parvum serovar 3 str. ATCC 27815 6155443 YP_001752332.1 CDS rplO NC_010503.1 285181 285627 D late assembly protein; 50S ribosomal protein L15 285181..285627 Ureaplasma parvum serovar 3 str. ATCC 27815 6155736 YP_001752333.1 CDS secY NC_010503.1 285680 287095 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 285680..287095 Ureaplasma parvum serovar 3 str. ATCC 27815 6155275 YP_001752334.1 CDS adk NC_010503.1 287104 287745 D identified by match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351; adenylate kinase 287104..287745 Ureaplasma parvum serovar 3 str. ATCC 27815 6155272 YP_001752335.1 CDS map NC_010503.1 287770 288519 D identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase, type I 287770..288519 Ureaplasma parvum serovar 3 str. ATCC 27815 6155623 YP_001752336.1 CDS infA NC_010503.1 288547 288771 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 288547..288771 Ureaplasma parvum serovar 3 str. ATCC 27815 6155278 YP_001752337.1 CDS rpmJ NC_010503.1 288795 288908 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 288795..288908 Ureaplasma parvum serovar 3 str. ATCC 27815 6155544 YP_001752338.1 CDS rpsM NC_010503.1 288933 289331 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 288933..289331 Ureaplasma parvum serovar 3 str. ATCC 27815 6155121 YP_001752339.1 CDS rpsK NC_010503.1 289353 289718 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 289353..289718 Ureaplasma parvum serovar 3 str. ATCC 27815 6155291 YP_001752340.1 CDS rpoA NC_010503.1 289755 290738 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 289755..290738 Ureaplasma parvum serovar 3 str. ATCC 27815 6155709 YP_001752341.1 CDS rplQ NC_010503.1 290766 291125 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 290766..291125 Ureaplasma parvum serovar 3 str. ATCC 27815 6155587 YP_001752342.1 CDS UPA3_0267 NC_010503.1 291392 293257 D hypothetical protein 291392..293257 Ureaplasma parvum serovar 3 str. ATCC 27815 6155493 YP_001752343.1 CDS UPA3_0268 NC_010503.1 293264 294559 D putative lipoprotein 293264..294559 Ureaplasma parvum serovar 3 str. ATCC 27815 6155280 YP_001752344.1 CDS UPA3_0269 NC_010503.1 294626 295033 D hypothetical protein 294626..295033 Ureaplasma parvum serovar 3 str. ATCC 27815 6155512 YP_001752345.1 CDS UPA3_0270 NC_010503.1 295023 295610 D identified by match to protein family HMM PF01205; hypothetical protein 295023..295610 Ureaplasma parvum serovar 3 str. ATCC 27815 6155522 YP_001752346.1 CDS UPA3_0271 NC_010503.1 295618 297402 R putative lipoprotein complement(295618..297402) Ureaplasma parvum serovar 3 str. ATCC 27815 6155315 YP_001752347.1 CDS UPA3_0272 NC_010503.1 297613 300597 R identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting P-type ATPase complement(297613..300597) Ureaplasma parvum serovar 3 str. ATCC 27815 6155426 YP_001752348.1 CDS UPA3_0273 NC_010503.1 300748 301077 D identified by match to protein family HMM PF03672; hypothetical protein 300748..301077 Ureaplasma parvum serovar 3 str. ATCC 27815 6155668 YP_001752349.1 CDS engB NC_010503.1 301082 301708 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 301082..301708 Ureaplasma parvum serovar 3 str. ATCC 27815 6155461 YP_001752350.1 CDS valS NC_010503.1 301689 304313 D identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422; valyl-tRNA synthetase 301689..304313 Ureaplasma parvum serovar 3 str. ATCC 27815 6155349 YP_001752351.1 CDS UPA3_0276 NC_010503.1 304318 304836 D identified by match to protein family HMM PF00588; rRNA methylase 304318..304836 Ureaplasma parvum serovar 3 str. ATCC 27815 6155553 YP_001752352.1 CDS trmB NC_010503.1 304842 305516 D identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091; tRNA (guanine-N(7)-)-methyltransferase 304842..305516 Ureaplasma parvum serovar 3 str. ATCC 27815 6155488 YP_001752353.1 CDS UPA3_0279 NC_010503.1 305764 306435 D hypothetical protein 305764..306435 Ureaplasma parvum serovar 3 str. ATCC 27815 6155418 YP_001752354.1 CDS UPA3_0280 NC_010503.1 306489 307856 D hypothetical protein 306489..307856 Ureaplasma parvum serovar 3 str. ATCC 27815 6155323 YP_001752355.1 CDS UPA3_0281 NC_010503.1 307834 308292 D identified by match to protein family HMM PF01230; histidine triad protein HIT 307834..308292 Ureaplasma parvum serovar 3 str. ATCC 27815 6155624 YP_001752356.1 CDS UPA3_0283 NC_010503.1 308302 309057 D hypothetical protein 308302..309057 Ureaplasma parvum serovar 3 str. ATCC 27815 6155380 YP_001752357.1 CDS UPA3_0282 NC_010503.1 309054 310118 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(309054..310118) Ureaplasma parvum serovar 3 str. ATCC 27815 6155710 YP_001752358.1 CDS UPA3_0284 NC_010503.1 310133 310345 R identified by glimmer; putative; hypothetical protein complement(310133..310345) Ureaplasma parvum serovar 3 str. ATCC 27815 6155129 YP_001752359.1 CDS UPA3_0285 NC_010503.1 310525 311070 D hypothetical protein 310525..311070 Ureaplasma parvum serovar 3 str. ATCC 27815 6155295 YP_001752360.1 CDS UPA3_0286 NC_010503.1 311073 312164 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 311073..312164 Ureaplasma parvum serovar 3 str. ATCC 27815 6155162 YP_001752361.1 CDS rpsU NC_010503.1 312240 312407 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 312240..312407 Ureaplasma parvum serovar 3 str. ATCC 27815 6155536 YP_001752362.1 CDS argS NC_010503.1 312531 314183 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 312531..314183 Ureaplasma parvum serovar 3 str. ATCC 27815 6155523 YP_001752363.1 CDS pgk NC_010503.1 314186 315454 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 314186..315454 Ureaplasma parvum serovar 3 str. ATCC 27815 6155659 YP_001752364.1 CDS UPA3_0290 NC_010503.1 315458 316549 D identified by match to protein family HMM PF05343; endo-1,4-beta-glucanase 315458..316549 Ureaplasma parvum serovar 3 str. ATCC 27815 6155138 YP_001752365.1 CDS deoD NC_010503.1 316623 317342 D identified by match to protein family HMM PF01048; match to protein family HMM TIGR00107; purine nucleoside phosphorylase 316623..317342 Ureaplasma parvum serovar 3 str. ATCC 27815 6155505 YP_001752366.1 CDS UPA3_0292 NC_010503.1 317438 317830 D identified by match to protein family HMM PF00216; DNA-binding protein HU 317438..317830 Ureaplasma parvum serovar 3 str. ATCC 27815 6155228 YP_001752367.1 CDS UPA3_0293 NC_010503.1 317930 320086 D identified by match to protein family HMM PF01966; match to protein family HMM PF04607; match to protein family HMM TIGR00691; ppGpp 3'-pyrophosphohydrolase 317930..320086 Ureaplasma parvum serovar 3 str. ATCC 27815 6155106 YP_001752368.1 CDS pyrG NC_010503.1 320086 321699 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 320086..321699 Ureaplasma parvum serovar 3 str. ATCC 27815 6155117 YP_001752369.1 CDS hisS NC_010503.1 321703 322965 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 321703..322965 Ureaplasma parvum serovar 3 str. ATCC 27815 6155589 YP_001752370.1 CDS aspS NC_010503.1 322971 324707 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 322971..324707 Ureaplasma parvum serovar 3 str. ATCC 27815 6155542 YP_001752371.1 CDS UPA3_0297 NC_010503.1 324700 325536 D hypothetical protein 324700..325536 Ureaplasma parvum serovar 3 str. ATCC 27815 6155541 YP_001752372.1 CDS msrA NC_010503.1 325577 326074 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 325577..326074 Ureaplasma parvum serovar 3 str. ATCC 27815 6155716 YP_001752373.1 CDS UPA3_0299 NC_010503.1 326110 326700 R hypothetical protein complement(326110..326700) Ureaplasma parvum serovar 3 str. ATCC 27815 6155653 YP_001752374.1 CDS UPA3_0300 NC_010503.1 326707 327195 R identified by match to protein family HMM PF00255; glutathione peroxidase complement(326707..327195) Ureaplasma parvum serovar 3 str. ATCC 27815 6155324 YP_001752375.1 CDS UPA3_0301 NC_010503.1 327517 337683 D identified by match to protein family HMM PF00657; hypothetical protein 327517..337683 Ureaplasma parvum serovar 3 str. ATCC 27815 6155371 YP_001752376.1 CDS UPA3_0302 NC_010503.1 337841 338680 D putative lipoprotein 337841..338680 Ureaplasma parvum serovar 3 str. ATCC 27815 6155438 YP_001752377.1 CDS UPA3_0303 NC_010503.1 338690 339400 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 338690..339400 Ureaplasma parvum serovar 3 str. ATCC 27815 6155682 YP_001752378.1 CDS UPA3_0305 NC_010503.1 339400 340107 D hypothetical protein 339400..340107 Ureaplasma parvum serovar 3 str. ATCC 27815 6155244 YP_001752379.1 CDS UPA3_0304 NC_010503.1 340104 340616 R identified by match to protein family HMM PF03838; recombination protein U complement(340104..340616) Ureaplasma parvum serovar 3 str. ATCC 27815 6155332 YP_001752380.1 CDS efp NC_010503.1 340759 341325 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 340759..341325 Ureaplasma parvum serovar 3 str. ATCC 27815 6155205 YP_001752381.1 CDS UPA3_0307 NC_010503.1 341328 341630 D hypothetical protein 341328..341630 Ureaplasma parvum serovar 3 str. ATCC 27815 6155603 YP_001752382.1 CDS nusB NC_010503.1 341633 342016 D identified by match to protein family HMM TIGR01951; transcription antitermination factor NusB 341633..342016 Ureaplasma parvum serovar 3 str. ATCC 27815 6155236 YP_001752383.1 CDS UPA3_0309 NC_010503.1 342022 342726 D identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046; hypothetical protein 342022..342726 Ureaplasma parvum serovar 3 str. ATCC 27815 6155357 YP_001752384.1 CDS UPA3_0311 NC_010503.1 342753 343700 D hypothetical protein 342753..343700 Ureaplasma parvum serovar 3 str. ATCC 27815 6155413 YP_001752385.1 CDS UPA3_0310 NC_010503.1 343697 343864 R hypothetical protein complement(343697..343864) Ureaplasma parvum serovar 3 str. ATCC 27815 6155144 YP_001752386.1 CDS greA NC_010503.1 348963 349433 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 348963..349433 Ureaplasma parvum serovar 3 str. ATCC 27815 6155301 YP_001752387.1 CDS UPA3_0320 NC_010503.1 350104 350871 D identified by match to protein family HMM PF05175; DNA methylase 350104..350871 Ureaplasma parvum serovar 3 str. ATCC 27815 6155596 YP_001752388.1 CDS UPA3_0321 NC_010503.1 350915 351835 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 350915..351835 Ureaplasma parvum serovar 3 str. ATCC 27815 6155285 YP_001752389.1 CDS UPA3_0322 NC_010503.1 352069 353019 R identified by glimmer; putative; hypothetical protein complement(352069..353019) Ureaplasma parvum serovar 3 str. ATCC 27815 6155422 YP_001752390.1 CDS UPA3_0323 NC_010503.1 353022 354167 R hypothetical protein complement(353022..354167) Ureaplasma parvum serovar 3 str. ATCC 27815 6155638 YP_001752391.1 CDS UPA3_0324 NC_010503.1 354504 355064 D hypothetical protein 354504..355064 Ureaplasma parvum serovar 3 str. ATCC 27815 6155147 YP_001752392.1 CDS rpsT NC_010503.1 355132 355386 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(355132..355386) Ureaplasma parvum serovar 3 str. ATCC 27815 6155458 YP_001752393.1 CDS UPA3_0326 NC_010503.1 355975 356415 R identified by match to protein family HMM PF00583; N-acetyltransferase complex, ribosomal protein-alanine-acetyltransferase subunit complement(355975..356415) Ureaplasma parvum serovar 3 str. ATCC 27815 6155645 YP_001752394.1 CDS UPA3_0327 NC_010503.1 356393 356968 R identified by match to protein family HMM PF00814; glycoprotease family protein complement(356393..356968) Ureaplasma parvum serovar 3 str. ATCC 27815 6155300 YP_001752395.1 CDS UPA3_0328 NC_010503.1 356961 357839 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; pseudouridylate synthase, 23S RNA-specific complement(356961..357839) Ureaplasma parvum serovar 3 str. ATCC 27815 6155264 YP_001752396.1 CDS UPA3_0329 NC_010503.1 357863 358654 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(357863..358654) Ureaplasma parvum serovar 3 str. ATCC 27815 6155181 YP_001752397.1 CDS ppa NC_010503.1 358654 359199 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(358654..359199) Ureaplasma parvum serovar 3 str. ATCC 27815 6155153 YP_001752398.1 CDS UPA3_0331 NC_010503.1 359365 359745 D hypothetical protein 359365..359745 Ureaplasma parvum serovar 3 str. ATCC 27815 6155148 YP_001752399.1 CDS UPA3_0332 NC_010503.1 360032 364681 D identified by match to protein family HMM PF02687; efflux ABC transporter, permease protein 360032..364681 Ureaplasma parvum serovar 3 str. ATCC 27815 6155615 YP_001752400.1 CDS nusA NC_010503.1 364794 366170 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 364794..366170 Ureaplasma parvum serovar 3 str. ATCC 27815 6155670 YP_001752401.1 CDS UPA3_0334 NC_010503.1 366181 366432 D identified by match to protein family HMM PF04296; hypothetical protein 366181..366432 Ureaplasma parvum serovar 3 str. ATCC 27815 6155628 YP_001752402.1 CDS infB NC_010503.1 366467 368311 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 366467..368311 Ureaplasma parvum serovar 3 str. ATCC 27815 6155641 YP_001752403.1 CDS rbfA NC_010503.1 368319 368669 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 368319..368669 Ureaplasma parvum serovar 3 str. ATCC 27815 6155231 YP_001752404.1 CDS UPA3_0337 NC_010503.1 368677 369087 D hypothetical protein 368677..369087 Ureaplasma parvum serovar 3 str. ATCC 27815 6155265 YP_001752405.1 CDS UPA3_0338 NC_010503.1 369167 369862 R identified by match to protein family HMM PF01863; hypothetical protein complement(369167..369862) Ureaplasma parvum serovar 3 str. ATCC 27815 6155260 YP_001752406.1 CDS lepA NC_010503.1 369875 371674 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(369875..371674) Ureaplasma parvum serovar 3 str. ATCC 27815 6155575 YP_001752407.1 CDS UPA3_0340 NC_010503.1 371792 372451 R identified by match to protein family HMM PF04011; LemA family protein complement(371792..372451) Ureaplasma parvum serovar 3 str. ATCC 27815 6155187 YP_001752408.1 CDS UPA3_0341 NC_010503.1 372597 372956 D hypothetical protein 372597..372956 Ureaplasma parvum serovar 3 str. ATCC 27815 6155594 YP_001752409.1 CDS UPA3_0342 NC_010503.1 372960 373733 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; rRNA methylase 372960..373733 Ureaplasma parvum serovar 3 str. ATCC 27815 6155218 YP_001752410.1 CDS UPA3_0343 NC_010503.1 373717 374661 D identified by match to protein family HMM PF06144; DNA polymerase III delta subunit superfamily protein 373717..374661 Ureaplasma parvum serovar 3 str. ATCC 27815 6155559 YP_001752411.1 CDS UPA3_0344 NC_010503.1 374818 376086 D hypothetical protein 374818..376086 Ureaplasma parvum serovar 3 str. ATCC 27815 6155678 YP_001752412.1 CDS UPA3_0345 NC_010503.1 376087 377070 D hypothetical protein 376087..377070 Ureaplasma parvum serovar 3 str. ATCC 27815 6155543 YP_001752413.1 CDS UPA3_0346 NC_010503.1 377402 377524 D hypothetical protein 377402..377524 Ureaplasma parvum serovar 3 str. ATCC 27815 6155480 YP_001752414.1 CDS UPA3_0347 NC_010503.1 377799 378101 R hypothetical protein complement(377799..378101) Ureaplasma parvum serovar 3 str. ATCC 27815 6155385 YP_001752415.1 CDS udk NC_010503.1 378130 378753 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(378130..378753) Ureaplasma parvum serovar 3 str. ATCC 27815 6155288 YP_001752416.1 CDS rpmF NC_010503.1 378939 379112 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 378939..379112 Ureaplasma parvum serovar 3 str. ATCC 27815 6155400 YP_001752417.1 CDS UPA3_0350 NC_010503.1 379121 379378 D hypothetical protein 379121..379378 Ureaplasma parvum serovar 3 str. ATCC 27815 6155721 YP_001752418.1 CDS UPA3_0351 NC_010503.1 379497 381506 D hypothetical protein 379497..381506 Ureaplasma parvum serovar 3 str. ATCC 27815 6155329 YP_001752419.1 CDS UPA3_0352 NC_010503.1 381530 382837 D hypothetical protein 381530..382837 Ureaplasma parvum serovar 3 str. ATCC 27815 6155487 YP_001752420.1 CDS UPA3_0353 NC_010503.1 382895 383704 D identified by match to protein family HMM PF02882; methylenetetrahydrofolate dehydrogenase 382895..383704 Ureaplasma parvum serovar 3 str. ATCC 27815 6155499 YP_001752421.1 CDS UPA3_0354 NC_010503.1 383781 385667 D hypothetical protein 383781..385667 Ureaplasma parvum serovar 3 str. ATCC 27815 6155137 YP_001752422.1 CDS dnaK NC_010503.1 385843 387654 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 385843..387654 Ureaplasma parvum serovar 3 str. ATCC 27815 6155726 YP_001752423.1 CDS UPA3_0356 NC_010503.1 387766 388872 D identified by similarity to RF:YP_279226.1; match to protein family HMM TIGR00481; hypothetical protein 387766..388872 Ureaplasma parvum serovar 3 str. ATCC 27815 6155409 YP_001752424.1 CDS UPA3_0357 NC_010503.1 388909 389484 D hypothetical protein 388909..389484 Ureaplasma parvum serovar 3 str. ATCC 27815 6155696 YP_001752425.1 CDS cmk NC_010503.1 389484 390158 D identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase 389484..390158 Ureaplasma parvum serovar 3 str. ATCC 27815 6155663 YP_001752426.1 CDS UPA3_0359 NC_010503.1 390235 390522 D hypothetical protein 390235..390522 Ureaplasma parvum serovar 3 str. ATCC 27815 6155521 YP_001752427.1 CDS UPA3_0360 NC_010503.1 390574 391368 D identified by match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 390574..391368 Ureaplasma parvum serovar 3 str. ATCC 27815 6155520 YP_001752428.1 CDS scpA NC_010503.1 391509 392384 D identified by match to protein family HMM PF02616; segregation and condensation protein A 391509..392384 Ureaplasma parvum serovar 3 str. ATCC 27815 6155629 YP_001752429.1 CDS scpB NC_010503.1 392377 393471 D functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B 392377..393471 Ureaplasma parvum serovar 3 str. ATCC 27815 6155175 YP_001752430.1 CDS tig NC_010503.1 393566 394915 D identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115; trigger factor 393566..394915 Ureaplasma parvum serovar 3 str. ATCC 27815 6155172 YP_001752431.1 CDS lon NC_010503.1 395062 397437 D identified by match to protein family HMM PF00004; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 395062..397437 Ureaplasma parvum serovar 3 str. ATCC 27815 6155299 YP_001752432.1 CDS UPA3_0365 NC_010503.1 397523 398869 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 397523..398869 Ureaplasma parvum serovar 3 str. ATCC 27815 6155403 YP_001752433.1 CDS UPA3_0366 NC_010503.1 398853 399518 D identified by match to protein family HMM PF04816; hypothetical protein 398853..399518 Ureaplasma parvum serovar 3 str. ATCC 27815 6155690 YP_001752434.1 CDS UPA3_0367 NC_010503.1 399499 400287 D identified by match to protein family HMM PF01784; NIF3 family protein 399499..400287 Ureaplasma parvum serovar 3 str. ATCC 27815 6155336 YP_001752435.1 CDS UPA3_0368 NC_010503.1 400317 400646 R hypothetical protein complement(400317..400646) Ureaplasma parvum serovar 3 str. ATCC 27815 6155158 YP_001752436.1 CDS UPA3_0369 NC_010503.1 400873 401898 R identified by glimmer; putative; hypothetical protein complement(400873..401898) Ureaplasma parvum serovar 3 str. ATCC 27815 6155338 YP_001752437.1 CDS truB NC_010503.1 402004 402687 D identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 402004..402687 Ureaplasma parvum serovar 3 str. ATCC 27815 6155585 YP_001752438.1 CDS UPA3_0371 NC_010503.1 402653 403504 D identified by match to protein family HMM PF01687; match to protein family HMM PF06574; riboflavin biosynthesis protein RibF-like protein 402653..403504 Ureaplasma parvum serovar 3 str. ATCC 27815 6155562 YP_001752439.1 CDS UPA3_0372 NC_010503.1 403647 405314 D putative lipoprotein 403647..405314 Ureaplasma parvum serovar 3 str. ATCC 27815 6155479 YP_001752440.1 CDS UPA3_0373 NC_010503.1 405329 406399 D identified by match to protein family HMM PF01032; citrate-dependent iron transport, membrane-bound protein 405329..406399 Ureaplasma parvum serovar 3 str. ATCC 27815 6155136 YP_001752441.1 CDS UPA3_0374 NC_010503.1 406405 407508 D identified by match to protein family HMM PF01032; ferrichrome ABC transporter 406405..407508 Ureaplasma parvum serovar 3 str. ATCC 27815 6155435 YP_001752442.1 CDS UPA3_0375 NC_010503.1 407657 409291 D putative ABC substrate-binding protein - iron 407657..409291 Ureaplasma parvum serovar 3 str. ATCC 27815 6155508 YP_001752443.1 CDS UPA3_0376 NC_010503.1 409384 411018 D putative ABC substrate-binding protein - iron 409384..411018 Ureaplasma parvum serovar 3 str. ATCC 27815 6155686 YP_001752444.1 CDS UPA3_0377 NC_010503.1 411176 411700 D putative lipoprotein 411176..411700 Ureaplasma parvum serovar 3 str. ATCC 27815 6155498 YP_001752445.1 CDS UPA3_0378 NC_010503.1 411742 413169 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase (NAD) family protein complement(411742..413169) Ureaplasma parvum serovar 3 str. ATCC 27815 6155472 YP_001752446.1 CDS asnA NC_010503.1 413201 414190 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(413201..414190) Ureaplasma parvum serovar 3 str. ATCC 27815 6155352 YP_001752447.1 CDS pgsA NC_010503.1 414168 414815 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(414168..414815) Ureaplasma parvum serovar 3 str. ATCC 27815 6155535 YP_001752448.1 CDS asnC NC_010503.1 414805 416169 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(414805..416169) Ureaplasma parvum serovar 3 str. ATCC 27815 6155564 YP_001752449.1 CDS UPA3_0382 NC_010503.1 416263 416886 R hypothetical protein complement(416263..416886) Ureaplasma parvum serovar 3 str. ATCC 27815 6155484 YP_001752450.1 CDS UPA3_0383 NC_010503.1 417026 418549 R hypothetical protein complement(417026..418549) Ureaplasma parvum serovar 3 str. ATCC 27815 6155449 YP_001752451.1 CDS pdp NC_010503.1 418791 420092 D identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644; pyrimidine-nucleoside phosphorylase 418791..420092 Ureaplasma parvum serovar 3 str. ATCC 27815 6155292 YP_001752452.1 CDS alaS NC_010503.1 420123 422843 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 420123..422843 Ureaplasma parvum serovar 3 str. ATCC 27815 6155168 YP_001752453.1 CDS UPA3_0386 NC_010503.1 422836 423279 D identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein 422836..423279 Ureaplasma parvum serovar 3 str. ATCC 27815 6155262 YP_001752454.1 CDS leuS NC_010503.1 423295 425715 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 423295..425715 Ureaplasma parvum serovar 3 str. ATCC 27815 6155445 YP_001752455.1 CDS UPA3_0388 NC_010503.1 425909 426532 R identified by match to protein family HMM PF00665; integrase-recombinase protein complement(425909..426532) Ureaplasma parvum serovar 3 str. ATCC 27815 6155220 YP_001752456.1 CDS UPA3_0389 NC_010503.1 426926 427153 R hypothetical protein complement(426926..427153) Ureaplasma parvum serovar 3 str. ATCC 27815 6155737 YP_001752457.1 CDS UPA3_0390 NC_010503.1 427352 428545 R multiple banded antigen complement(427352..428545) Ureaplasma parvum serovar 3 str. ATCC 27815 6155331 YP_001752458.1 CDS UPA3_0391 NC_010503.1 428856 429605 D hypothetical protein 428856..429605 Ureaplasma parvum serovar 3 str. ATCC 27815 6155227 YP_001752459.1 CDS UPA3_0392 NC_010503.1 429747 429959 R secreted protein complement(429747..429959) Ureaplasma parvum serovar 3 str. ATCC 27815 6155725 YP_001752460.1 CDS polC NC_010503.1 430129 434457 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 430129..434457 Ureaplasma parvum serovar 3 str. ATCC 27815 6155441 YP_001752461.1 CDS UPA3_0394 NC_010503.1 434572 436212 D putative lipoprotein 434572..436212 Ureaplasma parvum serovar 3 str. ATCC 27815 6155561 YP_001752462.1 CDS UPA3_0395 NC_010503.1 436292 437095 R hypothetical protein complement(436292..437095) Ureaplasma parvum serovar 3 str. ATCC 27815 6155223 YP_001752463.1 CDS UPA3_0396 NC_010503.1 437095 437601 R identified by match to protein family HMM PF02525; hypothetical protein complement(437095..437601) Ureaplasma parvum serovar 3 str. ATCC 27815 6155584 YP_001752464.1 CDS uvrC NC_010503.1 437769 439523 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(437769..439523) Ureaplasma parvum serovar 3 str. ATCC 27815 6155279 YP_001752465.1 CDS UPA3_0398 NC_010503.1 439523 440497 R identified by match to protein family HMM PF01210; match to protein family HMM PF07479; NAD+ dependent glycerol-3-phosphate dehydrogenase complement(439523..440497) Ureaplasma parvum serovar 3 str. ATCC 27815 6155675 YP_001752466.1 CDS engA NC_010503.1 440505 441833 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(440505..441833) Ureaplasma parvum serovar 3 str. ATCC 27815 6155327 YP_001752467.1 CDS UPA3_0400 NC_010503.1 441969 443066 D identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein 441969..443066 Ureaplasma parvum serovar 3 str. ATCC 27815 6155602 YP_001752468.1 CDS mraZ NC_010503.1 443142 443579 D identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242; MraZ protein 443142..443579 Ureaplasma parvum serovar 3 str. ATCC 27815 6155455 YP_001752469.1 CDS mraW NC_010503.1 443569 444495 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 443569..444495 Ureaplasma parvum serovar 3 str. ATCC 27815 6155609 YP_001752470.1 CDS UPA3_0403 NC_010503.1 444514 445695 D hypothetical protein 444514..445695 Ureaplasma parvum serovar 3 str. ATCC 27815 6155388 YP_001752471.1 CDS UPA3_0404 NC_010503.1 445791 446666 D identified by match to protein family HMM PF07751; hypothetical protein 445791..446666 Ureaplasma parvum serovar 3 str. ATCC 27815 6155563 YP_001752472.1 CDS UPA3_0405 NC_010503.1 446671 450525 D identified by similarity to GB:BAC44638.1; hypothetical protein 446671..450525 Ureaplasma parvum serovar 3 str. ATCC 27815 6155104 YP_001752473.1 CDS UPA3_0406 NC_010503.1 450586 451401 D hypothetical protein 450586..451401 Ureaplasma parvum serovar 3 str. ATCC 27815 6155317 YP_001752474.1 CDS UPA3_0407 NC_010503.1 451508 453622 D identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; chaperone ClpB 451508..453622 Ureaplasma parvum serovar 3 str. ATCC 27815 6155237 YP_001752475.1 CDS UPA3_0408 NC_010503.1 453776 455560 D hypothetical protein 453776..455560 Ureaplasma parvum serovar 3 str. ATCC 27815 6155277 YP_001752476.1 CDS acpS NC_010503.1 455590 455937 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(455590..455937) Ureaplasma parvum serovar 3 str. ATCC 27815 6155189 YP_001752477.1 CDS UPA3_0410 NC_010503.1 455942 456241 R hypothetical protein complement(455942..456241) Ureaplasma parvum serovar 3 str. ATCC 27815 6155173 YP_001752478.1 CDS UPA3_0411 NC_010503.1 456292 456573 R hypothetical protein complement(456292..456573) Ureaplasma parvum serovar 3 str. ATCC 27815 6155193 YP_001752479.1 CDS UPA3_0412 NC_010503.1 456575 456853 R hypothetical protein complement(456575..456853) Ureaplasma parvum serovar 3 str. ATCC 27815 6155424 YP_001752480.1 CDS rnhC NC_010503.1 456903 457853 R identified by match to protein family HMM PF01351; ribonuclease HIII complement(456903..457853) Ureaplasma parvum serovar 3 str. ATCC 27815 6155247 YP_001752481.1 CDS UPA3_0414 NC_010503.1 457953 458558 D hypothetical protein 457953..458558 Ureaplasma parvum serovar 3 str. ATCC 27815 6155622 YP_001752482.1 CDS UPA3_0415 NC_010503.1 458651 459697 R identified by match to protein family HMM PF01032; hemin permease complement(458651..459697) Ureaplasma parvum serovar 3 str. ATCC 27815 6155382 YP_001752483.1 CDS UPA3_0416 NC_010503.1 459700 460719 R identified by match to protein family HMM PF01032; ferrichrome ABC transporter complement(459700..460719) Ureaplasma parvum serovar 3 str. ATCC 27815 6155286 YP_001752484.1 CDS UPA3_0417 NC_010503.1 460730 462178 R putative ABC substrate-binding protein - iron complement(460730..462178) Ureaplasma parvum serovar 3 str. ATCC 27815 6155529 YP_001752485.1 CDS mnmA NC_010503.1 462259 463416 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(462259..463416) Ureaplasma parvum serovar 3 str. ATCC 27815 6155225 YP_001752486.1 CDS UPA3_0419 NC_010503.1 463525 464421 D hypothetical protein 463525..464421 Ureaplasma parvum serovar 3 str. ATCC 27815 6155694 YP_001752487.1 CDS UPA3_0420 NC_010503.1 464652 465458 R integrase-recombinase protein complement(464652..465458) Ureaplasma parvum serovar 3 str. ATCC 27815 6155139 YP_001752488.1 CDS UPA3_0421 NC_010503.1 465518 466291 R identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; membrane protein complement(465518..466291) Ureaplasma parvum serovar 3 str. ATCC 27815 6155702 YP_001752489.1 CDS UPA3_0422 NC_010503.1 466506 467702 D hypothetical protein 466506..467702 Ureaplasma parvum serovar 3 str. ATCC 27815 6155298 YP_001752490.1 CDS grpE NC_010503.1 467795 468451 R identified by match to protein family HMM PF01025; co-chaperone GrpE complement(467795..468451) Ureaplasma parvum serovar 3 str. ATCC 27815 6155669 YP_001752491.1 CDS dnaJ NC_010503.1 468451 469578 R identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349; chaperone protein DnaJ complement(468451..469578) Ureaplasma parvum serovar 3 str. ATCC 27815 6155211 YP_001752492.1 CDS UPA3_0425 NC_010503.1 469706 470155 R hypothetical protein complement(469706..470155) Ureaplasma parvum serovar 3 str. ATCC 27815 6155434 YP_001752493.1 CDS UPA3_0426 NC_010503.1 470136 471056 R hypothetical protein complement(470136..471056) Ureaplasma parvum serovar 3 str. ATCC 27815 6155340 YP_001752494.1 CDS ileS NC_010503.1 471208 473910 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 471208..473910 Ureaplasma parvum serovar 3 str. ATCC 27815 6155135 YP_001752495.1 CDS UPA3_0428 NC_010503.1 473914 474876 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 473914..474876 Ureaplasma parvum serovar 3 str. ATCC 27815 6155582 YP_001752496.1 CDS metK NC_010503.1 474876 476030 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 474876..476030 Ureaplasma parvum serovar 3 str. ATCC 27815 6155706 YP_001752497.1 CDS mutM NC_010503.1 476233 477060 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(476233..477060) Ureaplasma parvum serovar 3 str. ATCC 27815 6155693 YP_001752498.1 CDS exo NC_010503.1 477102 477971 R identified by match to protein family HMM PF01367; match to protein family HMM PF02739; hypothetical protein complement(477102..477971) Ureaplasma parvum serovar 3 str. ATCC 27815 6155534 YP_001752499.1 CDS dnaE NC_010503.1 477975 480884 R catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand; in the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE complement(477975..480884) Ureaplasma parvum serovar 3 str. ATCC 27815 6155657 YP_001752500.1 CDS UPA3_0434 NC_010503.1 480884 481096 R hypothetical protein complement(480884..481096) Ureaplasma parvum serovar 3 str. ATCC 27815 6155257 YP_001752501.1 CDS UPA3_0435 NC_010503.1 481181 482146 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein complement(481181..482146) Ureaplasma parvum serovar 3 str. ATCC 27815 6155239 YP_001752502.1 CDS thiI NC_010503.1 482164 483336 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(482164..483336) Ureaplasma parvum serovar 3 str. ATCC 27815 6155665 YP_001752503.1 CDS UPA3_0437 NC_010503.1 483314 484180 R hypothetical protein complement(483314..484180) Ureaplasma parvum serovar 3 str. ATCC 27815 6155683 YP_001752504.1 CDS UPA3_0438 NC_010503.1 484295 485041 D hypothetical protein 484295..485041 Ureaplasma parvum serovar 3 str. ATCC 27815 6155374 YP_001752505.1 CDS hrcA NC_010503.1 485028 486101 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 485028..486101 Ureaplasma parvum serovar 3 str. ATCC 27815 6155440 YP_001752506.1 CDS UPA3_0440 NC_010503.1 486091 486594 D hypothetical protein 486091..486594 Ureaplasma parvum serovar 3 str. ATCC 27815 6155360 YP_001752507.1 CDS UPA3_0441 NC_010503.1 486606 487316 D identified by match to protein family HMM PF04167; hypothetical protein 486606..487316 Ureaplasma parvum serovar 3 str. ATCC 27815 6155611 YP_001752508.1 CDS UPA3_0442 NC_010503.1 487309 488073 D hypothetical protein 487309..488073 Ureaplasma parvum serovar 3 str. ATCC 27815 6155552 YP_001752509.1 CDS UPA3_0443 NC_010503.1 488231 488428 R hypothetical protein complement(488231..488428) Ureaplasma parvum serovar 3 str. ATCC 27815 6155720 YP_001752510.1 CDS UPA3_0444 NC_010503.1 488679 489356 D hypothetical protein 488679..489356 Ureaplasma parvum serovar 3 str. ATCC 27815 6155176 YP_001752511.1 CDS UPA3_0445 NC_010503.1 489413 489964 D hypothetical protein 489413..489964 Ureaplasma parvum serovar 3 str. ATCC 27815 6155354 YP_001752512.1 CDS UPA3_0446 NC_010503.1 490176 490688 R identified by match to protein family HMM PF00210; urease complement(490176..490688) Ureaplasma parvum serovar 3 str. ATCC 27815 6155122 YP_001752513.1 CDS ureD NC_010503.1 490795 491658 R identified by match to protein family HMM PF01774; urease accessory protein UreD complement(490795..491658) Ureaplasma parvum serovar 3 str. ATCC 27815 6155625 YP_001752514.1 CDS ureG NC_010503.1 491668 492288 R identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101; urease accessory protein UreG complement(491668..492288) Ureaplasma parvum serovar 3 str. ATCC 27815 6155742 YP_001752515.1 CDS UPA3_0449 NC_010503.1 492370 493077 R identified by match to protein family HMM PF01730; urease accessory protein UreF complement(492370..493077) Ureaplasma parvum serovar 3 str. ATCC 27815 6155204 YP_001752516.1 CDS UPA3_0450 NC_010503.1 493064 493513 R involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE complement(493064..493513) Ureaplasma parvum serovar 3 str. ATCC 27815 6155650 YP_001752517.1 CDS ureC NC_010503.1 493578 495374 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(493578..495374) Ureaplasma parvum serovar 3 str. ATCC 27815 6155579 YP_001752518.1 CDS ureB NC_010503.1 495420 495794 R identified by match to protein family HMM PF00699; match to protein family HMM TIGR00192; urease, beta subunit complement(495420..495794) Ureaplasma parvum serovar 3 str. ATCC 27815 6155113 YP_001752519.1 CDS ureA NC_010503.1 495841 496146 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(495841..496146) Ureaplasma parvum serovar 3 str. ATCC 27815 6155109 YP_001752520.1 CDS UPA3_0454 NC_010503.1 496230 496358 R identified by glimmer; putative; hypothetical protein complement(496230..496358) Ureaplasma parvum serovar 3 str. ATCC 27815 6155447 YP_001752521.1 CDS UPA3_0455 NC_010503.1 496448 497611 D identified by match to protein family HMM PF00005; ferrichrome transport ATP-binding protein 496448..497611 Ureaplasma parvum serovar 3 str. ATCC 27815 6155421 YP_001752522.1 CDS rrmJ NC_010503.1 497694 498437 D identified by match to protein family HMM PF01479; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J 497694..498437 Ureaplasma parvum serovar 3 str. ATCC 27815 6155592 YP_001752523.1 CDS UPA3_0457 NC_010503.1 498427 499509 D identified by match to protein family HMM PF00817; DNA polymerase IV (Pol IV) 498427..499509 Ureaplasma parvum serovar 3 str. ATCC 27815 6155177 YP_001752524.1 CDS UPA3_0458 NC_010503.1 499521 499850 R identified by match to protein family HMM PF05491; holliday junction ATP-dependent DNA helicase RuvB complement(499521..499850) Ureaplasma parvum serovar 3 str. ATCC 27815 6155515 YP_001752525.1 CDS UPA3_0459 NC_010503.1 499964 500215 D hypothetical protein 499964..500215 Ureaplasma parvum serovar 3 str. ATCC 27815 6155639 YP_001752526.1 CDS UPA3_0460 NC_010503.1 500297 501796 R identified by glimmer; putative; hypothetical protein complement(500297..501796) Ureaplasma parvum serovar 3 str. ATCC 27815 6155532 YP_001752527.1 CDS UPA3_0461 NC_010503.1 501744 503096 R hypothetical protein complement(501744..503096) Ureaplasma parvum serovar 3 str. ATCC 27815 6155130 YP_001752528.1 CDS UPA3_0462 NC_010503.1 503050 504249 R hypothetical protein complement(503050..504249) Ureaplasma parvum serovar 3 str. ATCC 27815 6155504 YP_001752529.1 CDS UPA3_0463 NC_010503.1 504640 506526 R putative lipoprotein complement(504640..506526) Ureaplasma parvum serovar 3 str. ATCC 27815 6155249 YP_001752530.1 CDS UPA3_0464 NC_010503.1 506682 506858 R identified by glimmer; putative; hypothetical protein complement(506682..506858) Ureaplasma parvum serovar 3 str. ATCC 27815 6155667 YP_001752531.1 CDS UPA3_0465 NC_010503.1 507050 507475 R hypothetical protein complement(507050..507475) Ureaplasma parvum serovar 3 str. ATCC 27815 6155200 YP_001752532.1 CDS UPA3_0466 NC_010503.1 508284 508658 D type I restriction enzyme S protein 508284..508658 Ureaplasma parvum serovar 3 str. ATCC 27815 6155698 YP_001752533.1 CDS ruvB NC_010503.1 508734 509672 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(508734..509672) Ureaplasma parvum serovar 3 str. ATCC 27815 6155165 YP_001752534.1 CDS UPA3_0468 NC_010503.1 509662 510249 R identified by match to protein family HMM PF07499; holliday junction ATP-dependent DNA helicase RuvA complement(509662..510249) Ureaplasma parvum serovar 3 str. ATCC 27815 6155282 YP_001752535.1 CDS UPA3_0469 NC_010503.1 510291 511454 R hypothetical protein complement(510291..511454) Ureaplasma parvum serovar 3 str. ATCC 27815 6155507 YP_001752536.1 CDS UPA3_0470 NC_010503.1 511534 512550 R hypothetical protein complement(511534..512550) Ureaplasma parvum serovar 3 str. ATCC 27815 6155115 YP_001752537.1 CDS proS NC_010503.1 512647 514065 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(512647..514065) Ureaplasma parvum serovar 3 str. ATCC 27815 6155356 YP_001752538.1 CDS UPA3_0472 NC_010503.1 514091 514558 R identified by match to protein family HMM PF01592; NifU family SUF system FeS assembly protein complement(514091..514558) Ureaplasma parvum serovar 3 str. ATCC 27815 6155133 YP_001752539.1 CDS UPA3_0473 NC_010503.1 514545 515753 R identified by match to protein family HMM PF00266; aminotransferase NifS complement(514545..515753) Ureaplasma parvum serovar 3 str. ATCC 27815 6155234 YP_001752540.1 CDS UPA3_0474 NC_010503.1 515965 519351 D hypothetical protein 515965..519351 Ureaplasma parvum serovar 3 str. ATCC 27815 6155654 YP_001752541.1 CDS UPA3_0475 NC_010503.1 519351 520010 D identified by match to protein family HMM PF00834; D-ribulose-5-phosphate 3 epimerase 519351..520010 Ureaplasma parvum serovar 3 str. ATCC 27815 6155423 YP_001752542.1 CDS pheT NC_010503.1 520137 522455 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(520137..522455) Ureaplasma parvum serovar 3 str. ATCC 27815 6155289 YP_001752543.1 CDS pheS NC_010503.1 522487 523488 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(522487..523488) Ureaplasma parvum serovar 3 str. ATCC 27815 6155161 YP_001752544.1 CDS UPA3_0478 NC_010503.1 523495 523965 R hypothetical protein complement(523495..523965) Ureaplasma parvum serovar 3 str. ATCC 27815 6155341 YP_001752545.1 CDS nadE NC_010503.1 523958 524725 R identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase complement(523958..524725) Ureaplasma parvum serovar 3 str. ATCC 27815 6155627 YP_001752546.1 CDS obgE NC_010503.1 524733 526040 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(524733..526040) Ureaplasma parvum serovar 3 str. ATCC 27815 6155637 YP_001752547.1 CDS UPA3_0481 NC_010503.1 526043 526861 R hypothetical protein complement(526043..526861) Ureaplasma parvum serovar 3 str. ATCC 27815 6155446 YP_001752548.1 CDS fmt NC_010503.1 526928 527845 R identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase complement(526928..527845) Ureaplasma parvum serovar 3 str. ATCC 27815 6155492 YP_001752549.1 CDS UPA3_0483 NC_010503.1 527919 528644 R hypothetical protein complement(527919..528644) Ureaplasma parvum serovar 3 str. ATCC 27815 6155462 YP_001752550.1 CDS def NC_010503.1 528894 529490 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 528894..529490 Ureaplasma parvum serovar 3 str. ATCC 27815 6155644 YP_001752551.1 CDS parE NC_010503.1 529497 531425 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 529497..531425 Ureaplasma parvum serovar 3 str. ATCC 27815 6155235 YP_001752552.1 CDS parC NC_010503.1 531431 533983 D identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01061; DNA topoisomerase IV, A subunit 531431..533983 Ureaplasma parvum serovar 3 str. ATCC 27815 6155732 YP_001752553.1 CDS UPA3_0487 NC_010503.1 533983 535068 D identified by similarity to OMNI:NTL01MG0418; hypothetical protein 533983..535068 Ureaplasma parvum serovar 3 str. ATCC 27815 6155733 YP_001752554.1 CDS nadD NC_010503.1 535095 536273 D catalyzes the reversible adenylation of nicotinate mononucleotide to nicotinic acid adenine dinucleotide; putative nicotinate-nucleotide adenylyltransferase 535095..536273 Ureaplasma parvum serovar 3 str. ATCC 27815 6155333 YP_001752555.1 CDS mtnN NC_010503.1 536283 536975 D identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704; MTA/SAH nucleosidase 536283..536975 Ureaplasma parvum serovar 3 str. ATCC 27815 6155631 YP_001752556.1 CDS UPA3_0490 NC_010503.1 537082 537333 D hypothetical protein 537082..537333 Ureaplasma parvum serovar 3 str. ATCC 27815 6155221 YP_001752557.1 CDS UPA3_0491 NC_010503.1 537623 539950 D hypothetical protein 537623..539950 Ureaplasma parvum serovar 3 str. ATCC 27815 6155110 YP_001752558.1 CDS UPA3_0492 NC_010503.1 539997 543938 D identified by match to protein family HMM PF07198; hypothetical protein 539997..543938 Ureaplasma parvum serovar 3 str. ATCC 27815 6155271 YP_001752559.1 CDS UPA3_0493 NC_010503.1 544025 545875 R putative lipoprotein complement(544025..545875) Ureaplasma parvum serovar 3 str. ATCC 27815 6155416 YP_001752560.1 CDS UPA3_0494 NC_010503.1 546031 548508 R identified by match to protein family HMM PF04851; res subunit family type III restriction enzyme complement(546031..548508) Ureaplasma parvum serovar 3 str. ATCC 27815 6155739 YP_001752561.1 CDS UPA3_0495 NC_010503.1 548514 549596 R identified by match to protein family HMM PF01555; DNA methylase complement(548514..549596) Ureaplasma parvum serovar 3 str. ATCC 27815 6155335 YP_001752562.1 CDS UPA3_0496 NC_010503.1 549751 550101 R type III restriction-modification system: methylase complement(549751..550101) Ureaplasma parvum serovar 3 str. ATCC 27815 6155270 YP_001752563.1 CDS UPA3_0497 NC_010503.1 550255 553332 R identified by match to protein family HMM PF07198; hypothetical protein complement(550255..553332) Ureaplasma parvum serovar 3 str. ATCC 27815 6155652 YP_001752564.1 CDS UPA3_0498 NC_010503.1 553643 555262 D identified by match to protein family HMM PF02608; hypothetical protein 553643..555262 Ureaplasma parvum serovar 3 str. ATCC 27815 6155311 YP_001752565.1 CDS UPA3_0499 NC_010503.1 555594 558371 R hypothetical protein complement(555594..558371) Ureaplasma parvum serovar 3 str. ATCC 27815 6155604 YP_001752566.1 CDS UPA3_0500 NC_010503.1 558651 572858 R identified by match to protein family HMM PF07198; hypothetical protein complement(558651..572858) Ureaplasma parvum serovar 3 str. ATCC 27815 6155712 YP_001752567.1 CDS UPA3_0501 NC_010503.1 573085 576396 R putative lipoprotein complement(573085..576396) Ureaplasma parvum serovar 3 str. ATCC 27815 6155738 YP_001752568.1 CDS ackA NC_010503.1 576667 577830 D identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016; acetate kinase 576667..577830 Ureaplasma parvum serovar 3 str. ATCC 27815 6155642 YP_001752569.1 CDS UPA3_0503 NC_010503.1 577834 579951 R putative lipoprotein complement(577834..579951) Ureaplasma parvum serovar 3 str. ATCC 27815 6155243 YP_001752570.1 CDS UPA3_0504 NC_010503.1 580136 581440 R identified by match to protein family HMM PF03372; hypothetical protein complement(580136..581440) Ureaplasma parvum serovar 3 str. ATCC 27815 6155518 YP_001752571.1 CDS UPA3_0505 NC_010503.1 581592 584333 R putative lipoprotein complement(581592..584333) Ureaplasma parvum serovar 3 str. ATCC 27815 6155425 YP_001752572.1 CDS apt NC_010503.1 584547 585068 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(584547..585068) Ureaplasma parvum serovar 3 str. ATCC 27815 6155368 YP_001752573.1 CDS UPA3_0507 NC_010503.1 585089 588100 R putative lipoprotein complement(585089..588100) Ureaplasma parvum serovar 3 str. ATCC 27815 6155178 YP_001752574.1 CDS UPA3_0508 NC_010503.1 588422 588889 D identified by similarity to SP:Q8EW68; match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 588422..588889 Ureaplasma parvum serovar 3 str. ATCC 27815 6155201 YP_001752575.1 CDS era NC_010503.1 588882 589784 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 588882..589784 Ureaplasma parvum serovar 3 str. ATCC 27815 6155539 YP_001752576.1 CDS recO NC_010503.1 589784 590500 D identified by match to protein family HMM TIGR00613; DNA repair protein RecO 589784..590500 Ureaplasma parvum serovar 3 str. ATCC 27815 6155256 YP_001752577.1 CDS glyS NC_010503.1 590534 591955 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 590534..591955 Ureaplasma parvum serovar 3 str. ATCC 27815 6155478 YP_001752578.1 CDS UPA3_0512 NC_010503.1 591943 593868 D identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391; DNA primase 591943..593868 Ureaplasma parvum serovar 3 str. ATCC 27815 6155567 YP_001752579.1 CDS UPA3_0513 NC_010503.1 593947 611358 R identified by glimmer; putative; hypothetical protein complement(593947..611358) Ureaplasma parvum serovar 3 str. ATCC 27815 6155304 YP_001752580.1 CDS UPA3_0514 NC_010503.1 611586 612719 D hypothetical protein 611586..612719 Ureaplasma parvum serovar 3 str. ATCC 27815 6155685 YP_001752581.1 CDS rpsD NC_010503.1 612818 613426 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(612818..613426) Ureaplasma parvum serovar 3 str. ATCC 27815 6155715 YP_001752582.1 CDS UPA3_0516 NC_010503.1 613692 615383 D hypothetical protein 613692..615383 Ureaplasma parvum serovar 3 str. ATCC 27815 6155560 YP_001752583.1 CDS UPA3_0526 NC_010503.1 616441 617232 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein complement(616441..617232) Ureaplasma parvum serovar 3 str. ATCC 27815 6155207 YP_001752584.1 CDS UPA3_0527 NC_010503.1 617236 619467 R identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA complement(617236..619467) Ureaplasma parvum serovar 3 str. ATCC 27815 6155171 YP_001752585.1 CDS UPA3_0528 NC_010503.1 619492 620313 R identified by match to protein family HMM PF06271; RDD family protein complement(619492..620313) Ureaplasma parvum serovar 3 str. ATCC 27815 6155191 YP_001752586.1 CDS UPA3_0529 NC_010503.1 620314 621252 R identified by match to protein family HMM PF00535; glycosyltransferase complement(620314..621252) Ureaplasma parvum serovar 3 str. ATCC 27815 6155524 YP_001752587.1 CDS UPA3_0532 NC_010503.1 621666 621869 D identified by glimmer; putative; hypothetical protein 621666..621869 Ureaplasma parvum serovar 3 str. ATCC 27815 6155195 YP_001752588.1 CDS UPA3_0533 NC_010503.1 621859 623001 D hypothetical protein 621859..623001 Ureaplasma parvum serovar 3 str. ATCC 27815 6155610 YP_001752589.1 CDS UPA3_0534 NC_010503.1 623024 623833 D hypothetical protein 623024..623833 Ureaplasma parvum serovar 3 str. ATCC 27815 6155454 YP_001752590.1 CDS acpP NC_010503.1 623850 624083 D identified by match to protein family HMM PF00550; acyl carrier protein 623850..624083 Ureaplasma parvum serovar 3 str. ATCC 27815 6155316 YP_001752591.1 CDS UPA3_0537 NC_010503.1 625189 626556 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(625189..626556) Ureaplasma parvum serovar 3 str. ATCC 27815 6155660 YP_001752592.1 CDS UPA3_0538 NC_010503.1 626669 628972 R identified by match to protein family HMM PF01580; cell division protein complement(626669..628972) Ureaplasma parvum serovar 3 str. ATCC 27815 6155619 YP_001752593.1 CDS UPA3_0539 NC_010503.1 628989 630659 R hypothetical protein complement(628989..630659) Ureaplasma parvum serovar 3 str. ATCC 27815 6155466 YP_001752594.1 CDS UPA3_0540 NC_010503.1 630799 632775 D identified by match to protein family HMM PF00005; match to protein family HMM PF03412; ABC transporter 630799..632775 Ureaplasma parvum serovar 3 str. ATCC 27815 6155677 YP_001752595.1 CDS UPA3_0542 NC_010503.1 632780 633115 D hypothetical protein 632780..633115 Ureaplasma parvum serovar 3 str. ATCC 27815 6155656 YP_001752596.1 CDS cdsA NC_010503.1 633104 634240 R identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase complement(633104..634240) Ureaplasma parvum serovar 3 str. ATCC 27815 6155378 YP_001752597.1 CDS frr NC_010503.1 634251 634802 R identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor complement(634251..634802) Ureaplasma parvum serovar 3 str. ATCC 27815 6155634 YP_001752598.1 CDS pyrH NC_010503.1 634820 635527 R identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075; uridylate kinase complement(634820..635527) Ureaplasma parvum serovar 3 str. ATCC 27815 6155557 YP_001752599.1 CDS tsf NC_010503.1 635611 636486 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(635611..636486) Ureaplasma parvum serovar 3 str. ATCC 27815 6155569 YP_001752600.1 CDS UPA3_0552 NC_010503.1 637414 638469 D identified by match to protein family HMM PF01032; ferrichrome ABC transporter 637414..638469 Ureaplasma parvum serovar 3 str. ATCC 27815 6155573 YP_001752601.1 CDS UPA3_0553 NC_010503.1 638471 639496 D identified by match to protein family HMM PF01032; ferric anguibactin transport system permerase protein 638471..639496 Ureaplasma parvum serovar 3 str. ATCC 27815 6155251 YP_001752602.1 CDS UPA3_0554 NC_010503.1 639536 641146 D putative ABC substrate-binding protein - iron 639536..641146 Ureaplasma parvum serovar 3 str. ATCC 27815 6155152 YP_001752603.1 CDS UPA3_0555 NC_010503.1 641218 641436 D hypothetical protein 641218..641436 Ureaplasma parvum serovar 3 str. ATCC 27815 6155242 YP_001752604.1 CDS UPA3_0556 NC_010503.1 641550 643343 R hypothetical protein complement(641550..643343) Ureaplasma parvum serovar 3 str. ATCC 27815 6155482 YP_001752605.1 CDS UPA3_0557 NC_010503.1 643432 645234 R hypothetical protein complement(643432..645234) Ureaplasma parvum serovar 3 str. ATCC 27815 6155364 YP_001752606.1 CDS pepF2 NC_010503.1 645297 647132 R identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase F complement(645297..647132) Ureaplasma parvum serovar 3 str. ATCC 27815 6155407 YP_001752607.1 CDS tuf NC_010503.1 647227 648411 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(647227..648411) Ureaplasma parvum serovar 3 str. ATCC 27815 6155473 YP_001752608.1 CDS fusA NC_010503.1 648548 650614 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(648548..650614) Ureaplasma parvum serovar 3 str. ATCC 27815 6155705 YP_001752609.1 CDS rpsG NC_010503.1 650641 651108 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(650641..651108) Ureaplasma parvum serovar 3 str. ATCC 27815 6155460 YP_001752610.1 CDS rpsL NC_010503.1 651136 651561 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(651136..651561) Ureaplasma parvum serovar 3 str. ATCC 27815 6155713 YP_001752611.1 CDS UPA3_0563 NC_010503.1 651747 653258 R identified by match to protein family HMM PF03767; 5'-nucleotidase complement(651747..653258) Ureaplasma parvum serovar 3 str. ATCC 27815 6155465 YP_001752612.1 CDS UPA3_0564 NC_010503.1 653469 656384 R identified by match to protein family HMM PF03235; match to protein family HMM PF07510; hypothetical protein complement(653469..656384) Ureaplasma parvum serovar 3 str. ATCC 27815 6155141 YP_001752613.1 CDS UPA3_0565 NC_010503.1 656388 657287 R identified by match to protein family HMM PF00145; cytosine-specific methyltransferase complement(656388..657287) Ureaplasma parvum serovar 3 str. ATCC 27815 6155381 YP_001752614.1 CDS UPA3_0566 NC_010503.1 657850 658605 D identified by match to protein family HMM PF00589; integrase-recombinase protein 657850..658605 Ureaplasma parvum serovar 3 str. ATCC 27815 6155273 YP_001752615.1 CDS UPA3_0567 NC_010503.1 658735 660393 R identified by match to protein family HMM PF02878; match to protein family HMM PF02879; phosphomannomutase complement(658735..660393) Ureaplasma parvum serovar 3 str. ATCC 27815 6155245 YP_001752616.1 CDS cdd NC_010503.1 660428 660823 R identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354; cytidine deaminase complement(660428..660823) Ureaplasma parvum serovar 3 str. ATCC 27815 6155326 YP_001752617.1 CDS UPA3_0570 NC_010503.1 661034 662107 R identified by match to protein family HMM PF00557; match to protein family HMM PF01321; creatinase/peptidase, M24 family protein complement(661034..662107) Ureaplasma parvum serovar 3 str. ATCC 27815 6155405 YP_001752618.1 CDS rpmG NC_010503.1 662118 662279 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(662118..662279) Ureaplasma parvum serovar 3 str. ATCC 27815 6155430 YP_001752619.1 CDS thrS NC_010503.1 662340 664082 R catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase complement(662340..664082) Ureaplasma parvum serovar 3 str. ATCC 27815 6155290 YP_001752620.1 CDS UPA3_0574 NC_010503.1 664235 665131 D identified by match to protein family HMM PF02645; hypothetical protein 664235..665131 Ureaplasma parvum serovar 3 str. ATCC 27815 6155728 YP_001752621.1 CDS truA NC_010503.1 665128 665853 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(665128..665853) Ureaplasma parvum serovar 3 str. ATCC 27815 6155314 YP_001752622.1 CDS UPA3_0575 NC_010503.1 665915 667231 R identified by match to protein family HMM PF02361; cobalt transport protein complement(665915..667231) Ureaplasma parvum serovar 3 str. ATCC 27815 6155391 YP_001752623.1 CDS cbiO NC_010503.1 667232 668533 R with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(667232..668533) Ureaplasma parvum serovar 3 str. ATCC 27815 6155296 YP_001752624.1 CDS cbiO NC_010503.1 668521 669405 R with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(668521..669405) Ureaplasma parvum serovar 3 str. ATCC 27815 6155651 YP_001752625.1 CDS rplA NC_010503.1 669545 670234 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(669545..670234) Ureaplasma parvum serovar 3 str. ATCC 27815 6155334 YP_001752626.1 CDS rplK NC_010503.1 670237 670689 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(670237..670689) Ureaplasma parvum serovar 3 str. ATCC 27815 6155614 YP_001752627.1 CDS UPA3_0580 NC_010503.1 670968 677759 D identified by match to protein family HMM PF02687; efflux ABC transporter, permease protein 670968..677759 Ureaplasma parvum serovar 3 str. ATCC 27815 6155401 YP_001752628.1 CDS gatB NC_010503.1 677808 679241 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(677808..679241) Ureaplasma parvum serovar 3 str. ATCC 27815 6155740 YP_001752629.1 CDS gatA NC_010503.1 679244 680677 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(679244..680677) Ureaplasma parvum serovar 3 str. ATCC 27815 6155186 YP_001752630.1 CDS UPA3_0583 NC_010503.1 680667 680951 R hypothetical protein complement(680667..680951) Ureaplasma parvum serovar 3 str. ATCC 27815 6155704 YP_001752631.1 CDS UPA3_0584 NC_010503.1 680972 682000 R in some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; hypothetical protein complement(680972..682000) Ureaplasma parvum serovar 3 str. ATCC 27815 6155420 YP_001752632.1 CDS ung NC_010503.1 682027 682665 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(682027..682665) Ureaplasma parvum serovar 3 str. ATCC 27815 6155681 YP_001752633.1 CDS UPA3_0586 NC_010503.1 682644 684410 R putative lipoprotein complement(682644..684410) Ureaplasma parvum serovar 3 str. ATCC 27815 6155636 YP_001752634.1 CDS UPA3_0587 NC_010503.1 684413 685873 R identified by match to protein family HMM PF03796; replicative DNA helicase complement(684413..685873) Ureaplasma parvum serovar 3 str. ATCC 27815 6155555 YP_001752635.1 CDS rplI NC_010503.1 685879 686316 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(685879..686316) Ureaplasma parvum serovar 3 str. ATCC 27815 6155655 YP_001752636.1 CDS rpsR NC_010503.1 686400 686639 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(686400..686639) Ureaplasma parvum serovar 3 str. ATCC 27815 6155697 YP_001752637.1 CDS ssb NC_010503.1 686648 687148 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein complement(686648..687148) Ureaplasma parvum serovar 3 str. ATCC 27815 6155546 YP_001752638.1 CDS rpsF NC_010503.1 687193 687675 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(687193..687675) Ureaplasma parvum serovar 3 str. ATCC 27815 6155367 YP_001752639.1 CDS UPA3_0592 NC_010503.1 687844 688353 D identified by match to protein family HMM PF00583; acetyltransferase 687844..688353 Ureaplasma parvum serovar 3 str. ATCC 27815 6155255 YP_001752640.1 CDS UPA3_0594 NC_010503.1 689199 689687 R hypothetical protein complement(689199..689687) Ureaplasma parvum serovar 3 str. ATCC 27815 6155588 YP_001752641.1 CDS UPA3_0595 NC_010503.1 689696 693091 R identified by match to protein family HMM PF00496; solute-binding family 5 protein complement(689696..693091) Ureaplasma parvum serovar 3 str. ATCC 27815 6155468 YP_001752642.1 CDS UPA3_0596 NC_010503.1 693110 698761 R hypothetical protein complement(693110..698761) Ureaplasma parvum serovar 3 str. ATCC 27815 6155142 YP_001752643.1 CDS UPA3_0597 NC_010503.1 698780 700099 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; oligopeptide transport system permease protein complement(698780..700099) Ureaplasma parvum serovar 3 str. ATCC 27815 6155580 YP_001752644.1 CDS UPA3_0598 NC_010503.1 700120 701640 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport system permease protein complement(700120..701640) Ureaplasma parvum serovar 3 str. ATCC 27815 6155617 YP_001752645.1 CDS UPA3_0599 NC_010503.1 701644 702642 R identified by match to protein family HMM PF00528; oligopeptide transport system permease protein complement(701644..702642) Ureaplasma parvum serovar 3 str. ATCC 27815 6155608 YP_001752646.1 CDS UPA3_0600 NC_010503.1 702647 703780 R identified by match to protein family HMM PF00528; oligopeptide transport system permease protein complement(702647..703780) Ureaplasma parvum serovar 3 str. ATCC 27815 6155593 YP_001752647.1 CDS UPA3_0601 NC_010503.1 703795 703965 R hypothetical protein complement(703795..703965) Ureaplasma parvum serovar 3 str. ATCC 27815 6155661 YP_001752648.1 CDS UPA3_0602 NC_010503.1 704270 705463 R putative lipoprotein complement(704270..705463) Ureaplasma parvum serovar 3 str. ATCC 27815 6155112 YP_001752649.1 CDS UPA3_0603 NC_010503.1 705526 705705 R identified by glimmer; putative; hypothetical protein complement(705526..705705) Ureaplasma parvum serovar 3 str. ATCC 27815 6155321 YP_001752650.1 CDS UPA3_0604 NC_010503.1 705893 707377 R identified by match to protein family HMM PF02588; hypothetical protein complement(705893..707377) Ureaplasma parvum serovar 3 str. ATCC 27815 6155111 YP_001752651.1 CDS rplS NC_010503.1 707512 707883 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(707512..707883) Ureaplasma parvum serovar 3 str. ATCC 27815 6155261 YP_001752652.1 CDS trmD NC_010503.1 707893 708579 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(707893..708579) Ureaplasma parvum serovar 3 str. ATCC 27815 6155387 YP_001752653.1 CDS rpsP NC_010503.1 708592 708888 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(708592..708888) Ureaplasma parvum serovar 3 str. ATCC 27815 6155495 YP_001752654.1 CDS UPA3_0608 NC_010503.1 708984 709817 R identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein complement(708984..709817) Ureaplasma parvum serovar 3 str. ATCC 27815 6155369 YP_001752655.1 CDS UPA3_0609 NC_010503.1 709848 711638 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase superfamily protein complement(709848..711638) Ureaplasma parvum serovar 3 str. ATCC 27815 6155167 YP_001752656.1 CDS UPA3_0610 NC_010503.1 711878 715981 R viral phosphatase complement(711878..715981) Ureaplasma parvum serovar 3 str. ATCC 27815 6155131 YP_001752657.1 CDS UPA3_0611 NC_010503.1 716177 717913 D hypothetical protein 716177..717913 Ureaplasma parvum serovar 3 str. ATCC 27815 6155467 YP_001752658.1 CDS UPA3_0612 NC_010503.1 717978 719264 D identified by match to protein family HMM PF07885; potassium channel protein 717978..719264 Ureaplasma parvum serovar 3 str. ATCC 27815 6155174 YP_001752659.1 CDS UPA3_0613 NC_010503.1 719302 720219 R hypothetical protein complement(719302..720219) Ureaplasma parvum serovar 3 str. ATCC 27815 6155731 YP_001752660.1 CDS UPA3_0614 NC_010503.1 720225 721178 R hypothetical protein complement(720225..721178) Ureaplasma parvum serovar 3 str. ATCC 27815 6155358 YP_001752661.1 CDS rpsI NC_010503.1 721248 721649 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(721248..721649) Ureaplasma parvum serovar 3 str. ATCC 27815 6155150 YP_001752662.1 CDS rplM NC_010503.1 721669 722115 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(721669..722115) Ureaplasma parvum serovar 3 str. ATCC 27815 6155320 YP_001752663.1 CDS UPA3_0617 NC_010503.1 722429 724009 D putative lipoprotein 722429..724009 Ureaplasma parvum serovar 3 str. ATCC 27815 6155361 YP_001752664.1 CDS UPA3_0618 NC_010503.1 724204 725817 D identified by match to protein family HMM PF00324; match to protein family HMM PF01490; amino acid transporter protein 724204..725817 Ureaplasma parvum serovar 3 str. ATCC 27815 6155513 YP_001752665.1 CDS UPA3_0619 NC_010503.1 726014 726514 D identified by match to protein family HMM TIGR00964; preprotein translocase SecE subunit 726014..726514 Ureaplasma parvum serovar 3 str. ATCC 27815 6155126 YP_001752666.1 CDS UPA3_0620 NC_010503.1 726540 727316 D identified by match to protein family HMM PF02357; match to protein family HMM TIGR01956; transcription termination/antitermination factor NusG 726540..727316 Ureaplasma parvum serovar 3 str. ATCC 27815 6155577 YP_001752667.1 CDS UPA3_0621 NC_010503.1 727803 729134 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase complement(727803..729134) Ureaplasma parvum serovar 3 str. ATCC 27815 6155570 YP_001752668.1 CDS UPA3_0622 NC_010503.1 729135 730739 R identified by match to protein family HMM PF01554; MATE transporter family DNA damage inducible protein complement(729135..730739) Ureaplasma parvum serovar 3 str. ATCC 27815 6155127 YP_001752669.1 CDS UPA3_0623 NC_010503.1 731213 732775 R identified by match to protein family HMM PF01554; MATE transporter family DNA damage inducible protein complement(731213..732775) Ureaplasma parvum serovar 3 str. ATCC 27815 6155436 YP_001752670.1 CDS deoC NC_010503.1 732924 733571 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(732924..733571) Ureaplasma parvum serovar 3 str. ATCC 27815 6155397 YP_001752671.1 CDS tkt NC_010503.1 733583 735544 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(733583..735544) Ureaplasma parvum serovar 3 str. ATCC 27815 6155305 YP_001752672.1 CDS UPA3_0626 NC_010503.1 735574 735837 R identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphohistidinoprotein-hexose phosphotransferase complement(735574..735837) Ureaplasma parvum serovar 3 str. ATCC 27815 6155514 YP_001752673.1 CDS UPA3_0627 NC_010503.1 735937 737535 R identified by match to protein family HMM PF00614; cardiolipin synthase complement(735937..737535) Ureaplasma parvum serovar 3 str. ATCC 27815 6155389 YP_001752674.1 CDS UPA3_0629 NC_010503.1 737792 738112 R identified by match to protein family HMM PF00085; thioredoxin complement(737792..738112) Ureaplasma parvum serovar 3 str. ATCC 27815 6155202 YP_001752675.1 CDS topA NC_010503.1 738141 740186 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(738141..740186) Ureaplasma parvum serovar 3 str. ATCC 27815 6155606 YP_001752676.1 CDS UPA3_0631 NC_010503.1 740249 740959 R hypothetical protein complement(740249..740959) Ureaplasma parvum serovar 3 str. ATCC 27815 6155729 YP_001752677.1 CDS UPA3_0632 NC_010503.1 741010 741831 R identified by match to protein family HMM PF01926; match to protein family HMM TIGR00650; GTPase complement(741010..741831) Ureaplasma parvum serovar 3 str. ATCC 27815 6155689 YP_001752678.1 CDS UPA3_0633 NC_010503.1 741843 742283 R hypothetical protein complement(741843..742283) Ureaplasma parvum serovar 3 str. ATCC 27815 6155714 YP_001752679.1 CDS tdk NC_010503.1 742320 742991 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(742320..742991) Ureaplasma parvum serovar 3 str. ATCC 27815 6155375 YP_001752680.1 CDS ychF NC_010503.1 742998 744104 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(742998..744104) Ureaplasma parvum serovar 3 str. ATCC 27815 6155548 YP_001752681.1 CDS fba NC_010503.1 744115 744987 R identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase, class II complement(744115..744987) Ureaplasma parvum serovar 3 str. ATCC 27815 6155283 YP_001752682.1 CDS rpoE NC_010503.1 744992 745474 R participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta complement(744992..745474) Ureaplasma parvum serovar 3 str. ATCC 27815 6155268 YP_001752683.1 CDS UPA3_0638 NC_010503.1 745522 746739 R identified by match to protein family HMM PF01966; HD domain-containing protein complement(745522..746739) Ureaplasma parvum serovar 3 str. ATCC 27815 6155156 YP_001752684.1 CDS gltX NC_010503.1 746748 748196 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(746748..748196) Ureaplasma parvum serovar 3 str. ATCC 27815 6155412 YP_001752685.1 CDS UPA3_0640 NC_010503.1 748186 748983 R identified by match to protein family HMM PF00288; hypothetical protein complement(748186..748983) Ureaplasma parvum serovar 3 str. ATCC 27815 6155353 YP_001752686.1 CDS ksgA NC_010503.1 749017 749850 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(749017..749850) Ureaplasma parvum serovar 3 str. ATCC 27815 6155597 YP_001752687.1 CDS UPA3_0642 NC_010503.1 749852 751003 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(749852..751003) Ureaplasma parvum serovar 3 str. ATCC 27815 6155621 YP_001752688.1 CDS rnpA NC_010503.1 751042 751383 R identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component complement(751042..751383) Ureaplasma parvum serovar 3 str. ATCC 27815 6155469 YP_001752689.1 CDS rpmH NC_010503.1 751389 751535 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(751389..751535) Ureaplasma parvum serovar 3 str. ATCC 27815 6155370 UPA3_0121 tRNA UPA3_0121 NC_010503.1 151614 151687 D tRNA-Gly 151614..151687 Ureaplasma parvum serovar 3 str. ATCC 27815 6155118 UPA3_0150 tRNA UPA3_0150 NC_010503.1 188073 188151 D tRNA-Ile 188073..188151 Ureaplasma parvum serovar 3 str. ATCC 27815 6155319 UPA3_0151 tRNA UPA3_0151 NC_010503.1 188153 188230 D tRNA-Ala 188153..188230 Ureaplasma parvum serovar 3 str. ATCC 27815 6155232 UPA3_0278 tRNA UPA3_0278 NC_010503.1 305553 305633 D tRNA-His 305553..305633 Ureaplasma parvum serovar 3 str. ATCC 27815 6155164 UPA3_0315 tRNA UPA3_0315 NC_010503.1 349512 349597 D tRNA-Tyr 349512..349597 Ureaplasma parvum serovar 3 str. ATCC 27815 6155483 UPA3_0316 tRNA UPA3_0316 NC_010503.1 349601 349677 D tRNA-Gln 349601..349677 Ureaplasma parvum serovar 3 str. ATCC 27815 6155437 UPA3_0317 tRNA UPA3_0317 NC_010503.1 349743 349819 D tRNA-Lys 349743..349819 Ureaplasma parvum serovar 3 str. ATCC 27815 6155229 UPA3_0318 tRNA UPA3_0318 NC_010503.1 349878 349965 D tRNA-Leu 349878..349965 Ureaplasma parvum serovar 3 str. ATCC 27815 6155576 UPA3_0319 tRNA UPA3_0319 NC_010503.1 349968 350041 D tRNA-Gly 349968..350041 Ureaplasma parvum serovar 3 str. ATCC 27815 6155339 UPA3_0430 tRNA UPA3_0430 NC_010503.1 476087 476170 R tRNA-Leu complement(476087..476170) Ureaplasma parvum serovar 3 str. ATCC 27815 6155568 UPA3_0518 tRNA UPA3_0518 NC_010503.1 615431 615506 R tRNA-Phe complement(615431..615506) Ureaplasma parvum serovar 3 str. ATCC 27815 6155259 UPA3_t01 tRNA UPA3_t01 NC_010503.1 615508 615583 R tRNA-Asp complement(615508..615583) Ureaplasma parvum serovar 3 str. ATCC 27815 9514850 UPA3_0519 tRNA UPA3_0519 NC_010503.1 615585 615663 R tRNA-Met complement(615585..615663) Ureaplasma parvum serovar 3 str. ATCC 27815 6155199 UPA3_0520 tRNA UPA3_0520 NC_010503.1 615719 615813 R tRNA-Ser complement(615719..615813) Ureaplasma parvum serovar 3 str. ATCC 27815 6155306 UPA3_0521 tRNA UPA3_0521 NC_010503.1 615880 615959 R tRNA-Met complement(615880..615959) Ureaplasma parvum serovar 3 str. ATCC 27815 6155590 UPA3_0522 tRNA UPA3_0522 NC_010503.1 615960 616038 R tRNA-Met complement(615960..616038) Ureaplasma parvum serovar 3 str. ATCC 27815 6155688 UPA3_0523 tRNA UPA3_0523 NC_010503.1 616041 616119 R tRNA-Pro complement(616041..616119) Ureaplasma parvum serovar 3 str. ATCC 27815 6155666 UPA3_0524 tRNA UPA3_0524 NC_010503.1 616165 616243 R tRNA-Arg complement(616165..616243) Ureaplasma parvum serovar 3 str. ATCC 27815 6155396 UPA3_0525 tRNA UPA3_0525 NC_010503.1 616246 616320 R tRNA-Cys complement(616246..616320) Ureaplasma parvum serovar 3 str. ATCC 27815 6155574 UPA3_0530 tRNA UPA3_0530 NC_010503.1 621338 621416 R tRNA-Arg complement(621338..621416) Ureaplasma parvum serovar 3 str. ATCC 27815 6155345 UPA3_0531 tRNA UPA3_0531 NC_010503.1 621491 621569 R tRNA-Arg complement(621491..621569) Ureaplasma parvum serovar 3 str. ATCC 27815 6155151 UPA3_0536 tRNA UPA3_0536 NC_010503.1 624146 624222 D tRNA-Sec 624146..624222 Ureaplasma parvum serovar 3 str. ATCC 27815 6155448 UPA3_0546 tRNA UPA3_0546 NC_010503.1 636634 636717 R tRNA-Leu complement(636634..636717) Ureaplasma parvum serovar 3 str. ATCC 27815 6155373 UPA3_0547 tRNA UPA3_0547 NC_010503.1 636721 636798 R tRNA-Lys complement(636721..636798) Ureaplasma parvum serovar 3 str. ATCC 27815 6155198 UPA3_0549 tRNA UPA3_0549 NC_010503.1 636869 636944 R tRNA-Thr complement(636869..636944) Ureaplasma parvum serovar 3 str. ATCC 27815 6155618 UPA3_t02 tRNA UPA3_t02 NC_010503.1 636946 637021 R tRNA-Val complement(636946..637021) Ureaplasma parvum serovar 3 str. ATCC 27815 9514849 UPA3_0550 tRNA UPA3_0550 NC_010503.1 637068 637144 R tRNA-Glu complement(637068..637144) Ureaplasma parvum serovar 3 str. ATCC 27815 6155565 UPA3_t03 tRNA UPA3_t03 NC_010503.1 637146 637220 D tRNA-Asn 637146..637220 Ureaplasma parvum serovar 3 str. ATCC 27815 9514848 UPA3_0569 tRNA UPA3_0569 NC_010503.1 660948 661023 R tRNA-Trp complement(660948..661023) Ureaplasma parvum serovar 3 str. ATCC 27815 6155719 UPA3_0628 tRNA UPA3_0628 NC_010503.1 737613 737703 R tRNA-Ser complement(737613..737703) Ureaplasma parvum serovar 3 str. ATCC 27815 6155307 UPA3_0117 rRNA UPA3_0117 NC_010503.1 145357 146887 D 16S ribosomal RNA 145357..146887 Ureaplasma parvum serovar 3 str. ATCC 27815 6155692 UPA3_0649 rRNA UPA3_0649 NC_010503.1 147175 150096 D 23S ribosomal RNA 147175..150096 Ureaplasma parvum serovar 3 str. ATCC 27815 9481950 UPA3_0118 rRNA rrf NC_010503.1 150153 150256 D 5S ribosomal RNA 150153..150256 Ureaplasma parvum serovar 3 str. ATCC 27815 6155415 UPA3_0312 rRNA UPA3_0312 NC_010503.1 343952 345482 D 16S ribosomal RNA 343952..345482 Ureaplasma parvum serovar 3 str. ATCC 27815 6155691 UPA3_0648 rRNA UPA3_0648 NC_010503.1 345770 348691 D 23S ribosomal RNA 345770..348691 Ureaplasma parvum serovar 3 str. ATCC 27815 9481949 UPA3_0650 rRNA UPA3_0650 NC_010503.1 348749 348852 D 5S ribosomal RNA 348749..348852 Ureaplasma parvum serovar 3 str. ATCC 27815 9481948