-- dump date 20111121_015458 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type NP_077831.1 13357559 876193 1..1374 1 NC_002162.1 chromosomal replication initiator protein 1374 dnaA 876193 dnaA Ureaplasma parvum serovar 3 str. ATCC 700970 chromosomal replication initiator protein NP_077831.1 1 D 273119 CDS NP_077832.1 13357560 876134 1515..1802 1 NC_002162.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1802 rpmE 876134 rpmE Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L31 NP_077832.1 1515 D 273119 CDS NP_077833.1 13357561 875952 1935..3014 1 NC_002162.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3014 prfA 875952 prfA Ureaplasma parvum serovar 3 str. ATCC 700970 peptide chain release factor 1 NP_077833.1 1935 D 273119 CDS NP_078454.1 13358170 876087 3014..3886 1 NC_002162.1 Authentic frameshift correction; hypothetical protein 3886 hemK 876087 hemK Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078454.1 3014 D 273119 CDS NP_078455.1 13358171 876055 3873..4427 1 NC_002162.1 Authentic frameshift correction; hypothetical protein 4427 876055 UU005m Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078455.1 3873 D 273119 CDS NP_077836.1 13357562 875812 4431..4895 1 NC_002162.1 galactoside O-acetyltransferase 4895 lacA 875812 lacA Ureaplasma parvum serovar 3 str. ATCC 700970 galactoside O-acetyltransferase NP_077836.1 4431 D 273119 CDS NP_077837.1 13357563 875958 4991..5551 1 NC_002162.1 hypothetical protein 5551 875958 UU007 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077837.1 4991 D 273119 CDS NP_077838.1 13357564 876199 5554..6030 1 NC_002162.1 hypothetical protein 6030 876199 UU008 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077838.1 5554 D 273119 CDS NP_077839.1 13357565 875854 6175..7797 1 NC_002162.1 Mg2+ ion transporter 7797 mgtE 875854 mgtE Ureaplasma parvum serovar 3 str. ATCC 700970 Mg2+ ion transporter NP_077839.1 6175 D 273119 CDS NP_077840.1 13357566 875864 7954..8454 1 NC_002162.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 8454 rplJ 875864 rplJ Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L10 NP_077840.1 7954 D 273119 CDS NP_077841.1 13357567 875855 8479..8844 1 NC_002162.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 8844 rplL 875855 rplL Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L7/L12 NP_077841.1 8479 D 273119 CDS NP_077842.1 13357568 875910 complement(9069..10619) 1 NC_002162.1 membrane lipoprotein 10619 875910 UU012 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_077842.1 9069 R 273119 CDS NP_077843.1 13357569 875988 complement(11005..11934) 1 NC_002162.1 ribose/galactose ABC transporter 11934 rbsC-2 875988 rbsC-2 Ureaplasma parvum serovar 3 str. ATCC 700970 ribose/galactose ABC transporter NP_077843.1 11005 R 273119 CDS NP_077844.1 13357570 875886 complement(11934..14144) 1 NC_002162.1 ribose/galactose ABC transporter 14144 rbsC-1 875886 rbsC-1 Ureaplasma parvum serovar 3 str. ATCC 700970 ribose/galactose ABC transporter NP_077844.1 11934 R 273119 CDS NP_077845.1 13357571 875860 complement(14147..15754) 1 NC_002162.1 methylgalactoside permease ATP-binding protein 15754 mglA 875860 mglA Ureaplasma parvum serovar 3 str. ATCC 700970 methylgalactoside permease ATP-binding protein NP_077845.1 14147 R 273119 CDS NP_077846.1 13357572 875842 complement(15810..17384) 1 NC_002162.1 lipoprotein 17384 875842 UU016 Ureaplasma parvum serovar 3 str. ATCC 700970 lipoprotein NP_077846.1 15810 R 273119 CDS NP_077847.1 13357573 875825 complement(17555..18352) 1 NC_002162.1 Uncharacterized deoxyribonuclease UU017; hypothetical protein 18352 875825 UU017 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077847.1 17555 R 273119 CDS NP_077848.1 13357574 875817 complement(18354..19670) 1 NC_002162.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 19670 trmE 875817 trmE Ureaplasma parvum serovar 3 str. ATCC 700970 tRNA modification GTPase TrmE NP_077848.1 18354 R 273119 CDS NP_077849.1 13357575 875807 complement(19673..20467) 1 NC_002162.1 DNA polymerase III delta subunit 20467 dnaH 875807 dnaH Ureaplasma parvum serovar 3 str. ATCC 700970 DNA polymerase III delta subunit NP_077849.1 19673 R 273119 CDS NP_077850.1 13357576 875806 complement(20468..21169) 1 NC_002162.1 thymidylate kinase 21169 tmk 875806 tmk Ureaplasma parvum serovar 3 str. ATCC 700970 thymidylate kinase NP_077850.1 20468 R 273119 CDS NP_077851.1 13357577 875797 complement(21141..22010) 1 NC_002162.1 triacylglycerol lipase 22010 lip3 875797 lip3 Ureaplasma parvum serovar 3 str. ATCC 700970 triacylglycerol lipase NP_077851.1 21141 R 273119 CDS NP_077852.1 13357578 875793 complement(22110..23132) 1 NC_002162.1 ferrichrome ABC transporter 23132 fatC-1 875793 fatC-1 Ureaplasma parvum serovar 3 str. ATCC 700970 ferrichrome ABC transporter NP_077852.1 22110 R 273119 CDS NP_077853.1 13357579 876171 complement(23133..24158) 1 NC_002162.1 ferrichrome ABC transporter 24158 fatD-1 876171 fatD-1 Ureaplasma parvum serovar 3 str. ATCC 700970 ferrichrome ABC transporter NP_077853.1 23133 R 273119 CDS NP_077854.1 13357580 876158 complement(24175..25587) 1 NC_002162.1 putative ABC substrate-binding protein - iron 25587 ABCsbp-1 876158 ABCsbp-1 Ureaplasma parvum serovar 3 str. ATCC 700970 putative ABC substrate-binding protein - iron NP_077854.1 24175 R 273119 CDS NP_077855.1 13357581 875997 complement(25611..26714) 1 NC_002162.1 ferrichrome ABC transporter 26714 fecC 875997 fecC Ureaplasma parvum serovar 3 str. ATCC 700970 ferrichrome ABC transporter NP_077855.1 25611 R 273119 CDS NP_077856.1 13357582 875972 complement(26879..27928) 1 NC_002162.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 27928 rpsB 875972 rpsB Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S2 NP_077856.1 26879 R 273119 CDS NP_077857.1 13357583 876023 complement(28028..28999) 1 NC_002162.1 putative ABC substrate-binding protein - iron 28999 ABCsbp-2 876023 ABCsbp-2 Ureaplasma parvum serovar 3 str. ATCC 700970 putative ABC substrate-binding protein - iron NP_077857.1 28028 R 273119 CDS NP_077858.1 13357584 876370 complement(29014..29760) 1 NC_002162.1 putative ABC substrate-binding protein - iron 29760 ABCsbp-3 876370 ABCsbp-3 Ureaplasma parvum serovar 3 str. ATCC 700970 putative ABC substrate-binding protein - iron NP_077858.1 29014 R 273119 CDS NP_077859.1 13357585 876153 complement(29766..31886) 1 NC_002162.1 hypothetical protein 31886 876153 UU029 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077859.1 29766 R 273119 CDS NP_077860.1 13357586 875962 31996..34239 1 NC_002162.1 hypothetical protein 34239 875962 UU030 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077860.1 31996 D 273119 CDS NP_077861.1 13357587 876203 34634..35398 1 NC_002162.1 membrane lipoprotein 35398 876203 UU031 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_077861.1 34634 D 273119 CDS NP_077862.1 13357588 876280 complement(35490..36017) 1 NC_002162.1 hypothetical protein 36017 876280 UU032 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077862.1 35490 R 273119 CDS NP_077863.1 13357589 876382 complement(36025..36498) 1 NC_002162.1 hypothetical protein 36498 876382 UU033 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077863.1 36025 R 273119 CDS NP_077864.1 13357590 876380 complement(36548..37615) 1 NC_002162.1 hypothetical protein 37615 876380 UU034 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077864.1 36548 R 273119 CDS NP_077865.1 13357591 876395 complement(37719..38477) 1 NC_002162.1 hypothetical protein 38477 876395 UU035 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077865.1 37719 R 273119 CDS NP_077866.1 13357592 876390 complement(38712..39545) 1 NC_002162.1 hypothetical protein 39545 876390 UU036 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077866.1 38712 R 273119 CDS NP_077867.1 13357593 876387 complement(39640..39906) 1 NC_002162.1 hypothetical protein 39906 876387 UU037 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077867.1 39640 R 273119 CDS NP_077868.1 13357594 876375 40330..41721 1 NC_002162.1 hypothetical protein 41721 876375 UU038 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077868.1 40330 D 273119 CDS NP_077869.1 13357595 876376 41797..43641 1 NC_002162.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 43641 gidA 876376 gidA Ureaplasma parvum serovar 3 str. ATCC 700970 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA NP_077869.1 41797 D 273119 CDS NP_077870.1 13357596 875991 43700..44344 1 NC_002162.1 glucose inhibited division protein B 44344 gidB 875991 gidB Ureaplasma parvum serovar 3 str. ATCC 700970 glucose inhibited division protein B NP_077870.1 43700 D 273119 CDS NP_077871.1 13357597 875957 44367..44729 1 NC_002162.1 hypothetical protein 44729 875957 UU041 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077871.1 44367 D 273119 CDS NP_077872.1 13357598 876379 44729..45145 1 NC_002162.1 hypothetical protein 45145 876379 UU042 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077872.1 44729 D 273119 CDS NP_077873.1 13357599 875970 45312..47828 1 NC_002162.1 membrane lipoprotein 47828 875970 UU043 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_077873.1 45312 D 273119 CDS NP_077874.1 13357600 876166 47851..50199 1 NC_002162.1 hypothetical protein 50199 876166 UU044 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077874.1 47851 D 273119 CDS NP_077875.1 13357601 876399 50230..52734 1 NC_002162.1 membrane lipoprotein 52734 876399 UU045 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_077875.1 50230 D 273119 CDS NP_077876.1 13357602 875971 52771..55146 1 NC_002162.1 hypothetical protein 55146 875971 UU046 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077876.1 52771 D 273119 CDS NP_077877.1 13357603 875803 55161..57764 1 NC_002162.1 ATP/GTP-binding protein 57764 875803 UU047 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_077877.1 55161 D 273119 CDS NP_077878.1 13357604 875819 57794..59284 1 NC_002162.1 hypothetical protein 59284 875819 UU048 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077878.1 57794 D 273119 CDS NP_077879.1 13357605 875845 59271..59786 1 NC_002162.1 hypothetical protein 59786 875845 UU049 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077879.1 59271 D 273119 CDS NP_077880.1 13357606 875867 59789..60703 1 NC_002162.1 hypothetical protein 60703 875867 UU050 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077880.1 59789 D 273119 CDS NP_077881.1 13357607 876373 60660..61172 1 NC_002162.1 hypothetical protein 61172 876373 UU051 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077881.1 60660 D 273119 CDS NP_077882.1 13357608 875902 61162..63327 1 NC_002162.1 hypothetical protein 63327 875902 UU052 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077882.1 61162 D 273119 CDS NP_077883.1 13357609 876191 63343..64878 1 NC_002162.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 64878 atpA-1 876191 atpA-1 Ureaplasma parvum serovar 3 str. ATCC 700970 F0F1 ATP synthase subunit alpha NP_077883.1 63343 D 273119 CDS NP_077884.1 13357610 875940 64878..66242 1 NC_002162.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 66242 atpD-1 875940 atpD-1 Ureaplasma parvum serovar 3 str. ATCC 700970 F0F1 ATP synthase subunit beta NP_077884.1 64878 D 273119 CDS NP_077885.1 13357611 875916 66507..69923 1 NC_002162.1 hypothetical protein 69923 mnuA-1 875916 mnuA-1 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077885.1 66507 D 273119 CDS NP_077886.1 13357612 875926 70018..70242 1 NC_002162.1 preprotein translocase subunit SecG 70242 secG 875926 secG Ureaplasma parvum serovar 3 str. ATCC 700970 preprotein translocase subunit SecG NP_077886.1 70018 D 273119 CDS NP_077887.1 13357613 875783 70243..72408 1 NC_002162.1 virulence associated protein - exoribonuclease 72408 vacB 875783 vacB Ureaplasma parvum serovar 3 str. ATCC 700970 virulence associated protein - exoribonuclease NP_077887.1 70243 D 273119 CDS NP_077888.1 13357614 875937 72608..73033 1 NC_002162.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 73033 smpB 875937 smpB Ureaplasma parvum serovar 3 str. ATCC 700970 SsrA-binding protein NP_077888.1 72608 D 273119 CDS NP_077889.1 13357615 875955 73014..74792 1 NC_002162.1 transport ATP-binding protein 74792 msbA-1 875955 msbA-1 Ureaplasma parvum serovar 3 str. ATCC 700970 transport ATP-binding protein NP_077889.1 73014 D 273119 CDS NP_077890.1 13357616 876386 74767..76563 1 NC_002162.1 transport ATP-binding protein 76563 msbA-2 876386 msbA-2 Ureaplasma parvum serovar 3 str. ATCC 700970 transport ATP-binding protein NP_077890.1 74767 D 273119 CDS NP_077891.1 13357617 875775 76623..77417 1 NC_002162.1 hypothetical protein 77417 875775 UU061 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077891.1 76623 D 273119 CDS NP_077892.1 13357618 876176 77527..79008 1 NC_002162.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 79008 lysS 876176 lysS Ureaplasma parvum serovar 3 str. ATCC 700970 lysyl-tRNA synthetase NP_077892.1 77527 D 273119 CDS NP_077893.1 13357619 876138 complement(79296..79772) 1 NC_002162.1 hypothetical protein 79772 876138 UU063 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077893.1 79296 R 273119 CDS NP_077894.1 13357620 875965 complement(79940..80206) 1 NC_002162.1 hypothetical protein 80206 875965 UU064 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077894.1 79940 R 273119 CDS NP_077895.1 13357621 875960 complement(80231..82057) 1 NC_002162.1 oligoendopeptidase F - zinc metalloprotease 82057 pepF-1 875960 pepF-1 Ureaplasma parvum serovar 3 str. ATCC 700970 oligoendopeptidase F - zinc metalloprotease NP_077895.1 80231 R 273119 CDS NP_077896.1 13357622 875959 82145..83026 1 NC_002162.1 phosphotransacetylase 83026 pta 875959 pta Ureaplasma parvum serovar 3 str. ATCC 700970 phosphotransacetylase NP_077896.1 82145 D 273119 CDS NP_077897.1 13357623 876184 complement(83073..83687) 1 NC_002162.1 hypothetical protein 83687 876184 UU067 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077897.1 83073 R 273119 CDS NP_077898.1 13357624 875833 complement(83725..84381) 1 NC_002162.1 hypothetical protein 84381 875833 UU068 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077898.1 83725 R 273119 CDS NP_077899.1 13357625 876183 complement(84472..85347) 1 NC_002162.1 iron(III) dicitrate transport ATP-binding protein 85347 fecE 876183 fecE Ureaplasma parvum serovar 3 str. ATCC 700970 iron(III) dicitrate transport ATP-binding protein NP_077899.1 84472 R 273119 CDS NP_077900.1 13357626 876004 complement(85352..86422) 1 NC_002162.1 hemin transport system permease 86422 hmuU-1 876004 hmuU-1 Ureaplasma parvum serovar 3 str. ATCC 700970 hemin transport system permease NP_077900.1 85352 R 273119 CDS NP_077901.1 13357627 876086 complement(86441..88408) 1 NC_002162.1 putative ABC substrate-binding protein - iron 88408 ABCsbp-4 876086 ABCsbp-4 Ureaplasma parvum serovar 3 str. ATCC 700970 putative ABC substrate-binding protein - iron NP_077901.1 86441 R 273119 CDS NP_077902.1 13357628 876372 88641..89969 1 NC_002162.1 hemolysin 89969 hlyC 876372 hlyC Ureaplasma parvum serovar 3 str. ATCC 700970 hemolysin NP_077902.1 88641 D 273119 CDS NP_077903.1 13357629 876034 complement(89987..90979) 1 NC_002162.1 hypothetical protein 90979 876034 UU073 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077903.1 89987 R 273119 CDS NP_077904.1 13357630 876144 complement(90945..91874) 1 NC_002162.1 thioredoxin reductase 91874 trxB 876144 trxB Ureaplasma parvum serovar 3 str. ATCC 700970 thioredoxin reductase NP_077904.1 90945 R 273119 CDS NP_077905.1 13357631 876143 complement(91893..92900) 1 NC_002162.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 92900 lgt 876143 lgt Ureaplasma parvum serovar 3 str. ATCC 700970 prolipoprotein diacylglyceryl transferase NP_077905.1 91893 R 273119 CDS NP_077906.1 13357632 876152 complement(92901..93827) 1 NC_002162.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 93827 hprK 876152 hprK Ureaplasma parvum serovar 3 str. ATCC 700970 HPr kinase/phosphorylase NP_077906.1 92901 R 273119 CDS NP_077907.1 13357633 876121 complement(93842..94843) 1 NC_002162.1 hypothetical protein 94843 876121 UU077 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077907.1 93842 R 273119 CDS NP_077908.1 13357634 876146 complement(94806..95366) 1 NC_002162.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 95366 pth 876146 pth Ureaplasma parvum serovar 3 str. ATCC 700970 peptidyl-tRNA hydrolase NP_077908.1 94806 R 273119 CDS NP_077909.1 13357635 876016 95588..96727 1 NC_002162.1 DNA pol III beta chain 96727 dnaN 876016 dnaN Ureaplasma parvum serovar 3 str. ATCC 700970 DNA pol III beta chain NP_077909.1 95588 D 273119 CDS NP_077910.1 13357636 876028 96865..97083 1 NC_002162.1 hypothetical protein 97083 876028 UU080 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077910.1 96865 D 273119 CDS NP_077911.1 13357637 876008 97095..99047 1 NC_002162.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 99047 gyrB 876008 gyrB Ureaplasma parvum serovar 3 str. ATCC 700970 DNA gyrase subunit B NP_077911.1 97095 D 273119 CDS NP_077912.1 13357638 876159 99069..101591 1 NC_002162.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 101591 gyrA 876159 gyrA Ureaplasma parvum serovar 3 str. ATCC 700970 DNA gyrase subunit A NP_077912.1 99069 D 273119 CDS NP_077913.1 13357639 876165 101699..102169 1 NC_002162.1 hypothetical protein 102169 876165 UU083 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077913.1 101699 D 273119 CDS NP_077914.1 13357640 876179 102208..103212 1 NC_002162.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 103212 recA 876179 recA Ureaplasma parvum serovar 3 str. ATCC 700970 recombinase A NP_077914.1 102208 D 273119 CDS NP_077915.1 13357641 876194 103244..104665 1 NC_002162.1 hypothetical protein 104665 876194 UU085 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077915.1 103244 D 273119 CDS NP_077916.1 13357642 876137 complement(104864..105562) 1 NC_002162.1 deoxyguanosine kinase 105562 dgk 876137 dgk Ureaplasma parvum serovar 3 str. ATCC 700970 deoxyguanosine kinase NP_077916.1 104864 R 273119 CDS NP_077917.1 13357643 875968 105760..107553 1 NC_002162.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 107553 dnaX 875968 dnaX Ureaplasma parvum serovar 3 str. ATCC 700970 DNA polymerase III subunits gamma and tau NP_077917.1 105760 D 273119 CDS NP_077918.1 13357644 875977 107561..107860 1 NC_002162.1 hypothetical protein 107860 875977 UU088 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077918.1 107561 D 273119 CDS NP_077919.1 13357645 876198 107869..108474 1 NC_002162.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 108474 recR 876198 recR Ureaplasma parvum serovar 3 str. ATCC 700970 recombination protein RecR NP_077919.1 107869 D 273119 CDS NP_077920.1 13357646 876122 108529..108798 1 NC_002162.1 hypothetical protein 108798 876122 UU089.1 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077920.1 108529 D 273119 CDS NP_077921.1 13357647 875966 108844..110598 1 NC_002162.1 hypothetical protein 110598 875966 UU090 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077921.1 108844 D 273119 CDS NP_077922.1 13357648 876208 111214..112560 1 NC_002162.1 signal recognition particle 112560 ffh 876208 ffh Ureaplasma parvum serovar 3 str. ATCC 700970 signal recognition particle NP_077922.1 111214 D 273119 CDS NP_077923.1 13357649 876003 112772..114559 1 NC_002162.1 membrane lipoprotein 114559 876003 UU092 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_077923.1 112772 D 273119 CDS NP_077924.1 13357650 876136 114559..115269 1 NC_002162.1 ABC transporter 115269 bcrA 876136 bcrA Ureaplasma parvum serovar 3 str. ATCC 700970 ABC transporter NP_077924.1 114559 D 273119 CDS NP_077925.1 13357651 876002 115391..118555 1 NC_002162.1 membrane lipoprotein 118555 876002 UU094 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_077925.1 115391 D 273119 CDS NP_077926.1 13357652 876154 complement(120158..123295) 1 NC_002162.1 type I restriction enzyme R protein 123295 hsdR 876154 hsdR Ureaplasma parvum serovar 3 str. ATCC 700970 type I restriction enzyme R protein NP_077926.1 120158 R 273119 CDS NP_077927.1 13357653 875993 complement(123316..123837) 1 NC_002162.1 type I restriction enzyme S protein (fragment) 123837 hsdS-1 875993 hsdS-1 Ureaplasma parvum serovar 3 str. ATCC 700970 type I restriction enzyme S protein (fragment) NP_077927.1 123316 R 273119 CDS NP_077928.1 13357654 875961 complement(123975..124184) 1 NC_002162.1 type I restriction enzyme S protein (fragment) 124184 hsdS-2 875961 hsdS-2 Ureaplasma parvum serovar 3 str. ATCC 700970 type I restriction enzyme S protein (fragment) NP_077928.1 123975 R 273119 CDS NP_077929.1 13357655 875963 124317..125363 1 NC_002162.1 type I restriction enzyme M protein (fragment) 125363 hsdM-1 875963 hsdM-1 Ureaplasma parvum serovar 3 str. ATCC 700970 type I restriction enzyme M protein (fragment) NP_077929.1 124317 D 273119 CDS NP_077930.1 13357656 876177 125367..126272 1 NC_002162.1 type I restriction enzyme S protein (fragment) 126272 hsdS-3 876177 hsdS-3 Ureaplasma parvum serovar 3 str. ATCC 700970 type I restriction enzyme S protein (fragment) NP_077930.1 125367 D 273119 CDS NP_077931.1 13357657 875956 126311..126874 1 NC_002162.1 type I restriction enzyme M protein (fragment) 126874 hsdM-2 875956 hsdM-2 Ureaplasma parvum serovar 3 str. ATCC 700970 type I restriction enzyme M protein (fragment) NP_077931.1 126311 D 273119 CDS NP_077932.1 13357658 876168 complement(126912..127478) 1 NC_002162.1 hypothetical protein 127478 876168 UU101 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077932.1 126912 R 273119 CDS NP_077933.1 13357659 876189 127704..130535 1 NC_002162.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 130535 uvrA 876189 uvrA Ureaplasma parvum serovar 3 str. ATCC 700970 excinuclease ABC subunit A NP_077933.1 127704 D 273119 CDS NP_077934.1 13357660 876173 130540..132204 1 NC_002162.1 membrane lipoprotein 132204 876173 UU103 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_077934.1 130540 D 273119 CDS NP_077935.1 13357661 876161 132231..132851 1 NC_002162.1 hypoxanthine-guanine phosphoribosyltransferase 132851 hpt 876161 hpt Ureaplasma parvum serovar 3 str. ATCC 700970 hypoxanthine-guanine phosphoribosyltransferase NP_077935.1 132231 D 273119 CDS NP_077936.1 13357662 876157 132856..135021 1 NC_002162.1 ATP-dependent zinc metallopeptidase - cell division protein 135021 ftsH 876157 ftsH Ureaplasma parvum serovar 3 str. ATCC 700970 ATP-dependent zinc metallopeptidase - cell division protein NP_077936.1 132856 D 273119 CDS NP_077937.1 13357663 876174 135132..136388 1 NC_002162.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 136388 serS 876174 serS Ureaplasma parvum serovar 3 str. ATCC 700970 seryl-tRNA synthetase NP_077937.1 135132 D 273119 CDS NP_077938.1 13357664 876167 136791..138350 1 NC_002162.1 spermidine/putrescine transport ATP-binding protein 138350 potA 876167 potA Ureaplasma parvum serovar 3 str. ATCC 700970 spermidine/putrescine transport ATP-binding protein NP_077938.1 136791 D 273119 CDS NP_077939.1 13357665 876160 138334..139341 1 NC_002162.1 spermidine/putrescine transport system permease 139341 potB 876160 potB Ureaplasma parvum serovar 3 str. ATCC 700970 spermidine/putrescine transport system permease NP_077939.1 138334 D 273119 CDS NP_077940.1 13357666 876202 139328..140182 1 NC_002162.1 spermidine/putrescine transport system permease 140182 potC 876202 potC Ureaplasma parvum serovar 3 str. ATCC 700970 spermidine/putrescine transport system permease NP_077940.1 139328 D 273119 CDS NP_077941.1 13357667 876149 140186..142222 1 NC_002162.1 membrane lipoprotein 142222 876149 UU110 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_077941.1 140186 D 273119 CDS NP_077942.1 13357668 876186 142320..142922 1 NC_002162.1 hypothetical protein 142922 876186 UU111 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077942.1 142320 D 273119 CDS NP_077943.1 13357669 876005 142985..144112 1 NC_002162.1 hypothetical protein 144112 876005 UU112 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077943.1 142985 D 273119 CDS NP_077944.1 13357670 876145 144136..145083 1 NC_002162.1 pseudouridine synthase (uracil hydrolase) 145083 sfhB 876145 sfhB Ureaplasma parvum serovar 3 str. ATCC 700970 pseudouridine synthase (uracil hydrolase) NP_077944.1 144136 D 273119 CDS NP_077945.1 13357671 875992 150369..150839 1 NC_002162.1 dihyrofolate reductase 150839 folA 875992 folA Ureaplasma parvum serovar 3 str. ATCC 700970 dihyrofolate reductase NP_077945.1 150369 D 273119 CDS NP_077946.1 13357672 875987 150787..151527 1 NC_002162.1 phosphoglycolate phosphatase 151527 gph 875987 gph Ureaplasma parvum serovar 3 str. ATCC 700970 phosphoglycolate phosphatase NP_077946.1 150787 D 273119 CDS NP_077947.1 13357673 876175 complement(151722..152345) 1 NC_002162.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 152345 upp 876175 upp Ureaplasma parvum serovar 3 str. ATCC 700970 uracil phosphoribosyltransferase NP_077947.1 151722 R 273119 CDS NP_077948.1 13357674 875804 complement(152590..153837) 1 NC_002162.1 tyrosyl tRNA synthetase 153837 tyrS 875804 tyrS Ureaplasma parvum serovar 3 str. ATCC 700970 tyrosyl tRNA synthetase NP_077948.1 152590 R 273119 CDS NP_077949.1 13357675 875823 153976..154878 1 NC_002162.1 ABC transporter 154878 ABC-1 875823 ABC-1 Ureaplasma parvum serovar 3 str. ATCC 700970 ABC transporter NP_077949.1 153976 D 273119 CDS NP_077950.1 13357676 875951 154895..157408 1 NC_002162.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 157408 secA 875951 secA Ureaplasma parvum serovar 3 str. ATCC 700970 preprotein translocase subunit SecA NP_077950.1 154895 D 273119 CDS NP_077951.1 13357677 875899 157411..159411 1 NC_002162.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 159411 uvrB 875899 uvrB Ureaplasma parvum serovar 3 str. ATCC 700970 excinuclease ABC subunit B NP_077951.1 157411 D 273119 CDS NP_077952.1 13357678 875939 159495..161516 1 NC_002162.1 DNA ligase 161516 lig 875939 lig Ureaplasma parvum serovar 3 str. ATCC 700970 DNA ligase NP_077952.1 159495 D 273119 CDS NP_077953.1 13357679 875884 161867..162448 1 NC_002162.1 hypothetical protein 162448 875884 UU122 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077953.1 161867 D 273119 CDS NP_077954.1 13357680 876417 162462..163772 1 NC_002162.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 163772 cysS 876417 cysS Ureaplasma parvum serovar 3 str. ATCC 700970 cysteinyl-tRNA synthetase NP_077954.1 162462 D 273119 CDS NP_077955.1 13357681 876418 163774..164493 1 NC_002162.1 rRNA methylase 164493 spoU-1 876418 spoU-1 Ureaplasma parvum serovar 3 str. ATCC 700970 rRNA methylase NP_077955.1 163774 D 273119 CDS NP_077956.1 13357682 876397 complement(164502..165686) 1 NC_002162.1 lipoprotein 165686 876397 UU125 Ureaplasma parvum serovar 3 str. ATCC 700970 lipoprotein NP_077956.1 164502 R 273119 CDS NP_077957.1 13357683 876408 complement(165698..168952) 1 NC_002162.1 hypothetical protein 168952 876408 UU126 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077957.1 165698 R 273119 CDS NP_077958.1 13357684 876413 complement(169079..169384) 1 NC_002162.1 hypothetical protein 169384 876413 UU127 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077958.1 169079 R 273119 CDS NP_077959.1 13357685 876405 complement(169527..169937) 1 NC_002162.1 ATP synthase epsilon chain 169937 atpC 876405 atpC Ureaplasma parvum serovar 3 str. ATCC 700970 ATP synthase epsilon chain NP_077959.1 169527 R 273119 CDS NP_077960.1 13357686 876404 complement(169937..171331) 1 NC_002162.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 171331 atpD-2 876404 atpD-2 Ureaplasma parvum serovar 3 str. ATCC 700970 F0F1 ATP synthase subunit beta NP_077960.1 169937 R 273119 CDS NP_077961.1 13357687 875839 complement(171358..172218) 1 NC_002162.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 172218 atpG 875839 atpG Ureaplasma parvum serovar 3 str. ATCC 700970 F0F1 ATP synthase subunit gamma NP_077961.1 171358 R 273119 CDS NP_077962.1 13357688 875994 complement(172220..173026) 1 NC_002162.1 hypothetical protein 173026 875994 UU131 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077962.1 172220 R 273119 CDS NP_077963.1 13357689 875853 complement(173026..175425) 1 NC_002162.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; ATP synthase subunit A 175425 atpA-2 875853 atpA-2 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP synthase subunit A NP_077963.1 173026 R 273119 CDS NP_077964.1 13357690 875857 complement(175428..175727) 1 NC_002162.1 ATP synthase delta chain C-term 175727 atpH-1 875857 atpH-1 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP synthase delta chain C-term NP_077964.1 175428 R 273119 CDS NP_077965.1 13357691 876007 complement(175737..176276) 1 NC_002162.1 ATP synthase delta chain N-term 176276 atpH-2 876007 atpH-2 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP synthase delta chain N-term NP_077965.1 175737 R 273119 CDS NP_077966.1 13357692 875774 complement(176280..176897) 1 NC_002162.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 176897 atpF 875774 atpF Ureaplasma parvum serovar 3 str. ATCC 700970 F0F1 ATP synthase subunit B NP_077966.1 176280 R 273119 CDS NP_077967.1 13357693 875901 complement(176966..177295) 1 NC_002162.1 ATP synthase C chain 177295 atpE 875901 atpE Ureaplasma parvum serovar 3 str. ATCC 700970 ATP synthase C chain NP_077967.1 176966 R 273119 CDS NP_077968.1 13357694 875837 complement(177344..178171) 1 NC_002162.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 178171 atpB 875837 atpB Ureaplasma parvum serovar 3 str. ATCC 700970 F0F1 ATP synthase subunit A NP_077968.1 177344 R 273119 CDS NP_077969.1 13357695 875894 complement(178197..178652) 1 NC_002162.1 hypothetical protein 178652 875894 UU138 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077969.1 178197 R 273119 CDS NP_077970.1 13357696 875862 178869..179579 1 NC_002162.1 hypothetical protein 179579 875862 UU139 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077970.1 178869 D 273119 CDS NP_077971.1 13357697 875777 179641..182586 1 NC_002162.1 p115 protein 182586 p115 875777 p115 Ureaplasma parvum serovar 3 str. ATCC 700970 p115 protein NP_077971.1 179641 D 273119 CDS NP_077972.1 13357698 875799 182589..183644 1 NC_002162.1 SRP family GTP-binding protein 183644 ftsY 875799 ftsY Ureaplasma parvum serovar 3 str. ATCC 700970 SRP family GTP-binding protein NP_077972.1 182589 D 273119 CDS NP_077973.1 13357699 875904 183634..183933 1 NC_002162.1 putative DNA-binding protein 183933 875904 UU142 Ureaplasma parvum serovar 3 str. ATCC 700970 putative DNA-binding protein NP_077973.1 183634 D 273119 CDS NP_077974.1 13357700 875907 complement(184037..187855) 1 NC_002162.1 hypothetical protein 187855 875907 UU143 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077974.1 184037 R 273119 CDS NP_077975.1 13357701 875913 complement(188298..189029) 1 NC_002162.1 hypothetical protein 189029 875913 UU144 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077975.1 188298 R 273119 CDS NP_077976.1 13357702 875914 189018..189800 1 NC_002162.1 integrase-recombinase protein 189800 ripX 875914 ripX Ureaplasma parvum serovar 3 str. ATCC 700970 integrase-recombinase protein NP_077976.1 189018 D 273119 CDS NP_077977.1 13357703 875917 189790..190416 1 NC_002162.1 hypothetical protein 190416 875917 UU146 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077977.1 189790 D 273119 CDS NP_077978.1 13357704 875918 190400..190573 1 NC_002162.1 hypothetical protein 190573 875918 UU147 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077978.1 190400 D 273119 CDS NP_077979.1 13357705 875919 190575..190916 1 NC_002162.1 hypothetical protein 190916 875919 UU148 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077979.1 190575 D 273119 CDS NP_077980.1 13357706 875921 190922..191218 1 NC_002162.1 hypothetical protein 191218 875921 UU149 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077980.1 190922 D 273119 CDS NP_077981.1 13357707 875938 191225..191461 1 NC_002162.1 hypothetical protein 191461 875938 UU150 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077981.1 191225 D 273119 CDS NP_077982.1 13357708 875947 191418..191600 1 NC_002162.1 hypothetical protein 191600 875947 UU151 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077982.1 191418 D 273119 CDS NP_077983.1 13357709 876000 191566..191829 1 NC_002162.1 hypothetical protein 191829 876000 UU152 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077983.1 191566 D 273119 CDS NP_077984.1 13357710 876392 191819..192154 1 NC_002162.1 hypothetical protein 192154 876392 UU153 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077984.1 191819 D 273119 CDS NP_077985.1 13357711 876206 192154..192810 1 NC_002162.1 hypothetical protein 192810 876206 UU154 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077985.1 192154 D 273119 CDS NP_077986.1 13357712 875999 192800..193489 1 NC_002162.1 hypothetical protein 193489 875999 UU155 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077986.1 192800 D 273119 CDS NP_077987.1 13357713 876035 193479..193940 1 NC_002162.1 hypothetical protein 193940 876035 UU156 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077987.1 193479 D 273119 CDS NP_077988.1 13357714 876389 193922..194599 1 NC_002162.1 hypothetical protein 194599 876389 UU157 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077988.1 193922 D 273119 CDS NP_077989.1 13357715 876181 complement(195503..195946) 1 NC_002162.1 hypothetical protein 195946 876181 UU158 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077989.1 195503 R 273119 CDS NP_077990.1 13357716 876412 complement(195915..196463) 1 NC_002162.1 hypothetical protein 196463 876412 UU159 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077990.1 195915 R 273119 CDS NP_077991.1 13357717 876416 complement(196450..196896) 1 NC_002162.1 membrane lipoprotein 196896 876416 UU160 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_077991.1 196450 R 273119 CDS NP_077992.1 13357718 876411 complement(196901..197236) 1 NC_002162.1 hypothetical protein 197236 876411 UU161 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077992.1 196901 R 273119 CDS NP_077993.1 13357719 876414 complement(197766..199139) 1 NC_002162.1 hypothetical protein 199139 876414 UU162 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077993.1 197766 R 273119 CDS NP_077994.1 13357720 876415 complement(199139..199921) 1 NC_002162.1 ATP/GTP-binding protein 199921 876415 UU163 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_077994.1 199139 R 273119 CDS NP_077995.1 13357721 876398 complement(199977..201164) 1 NC_002162.1 hypothetical protein 201164 876398 UU164 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077995.1 199977 R 273119 CDS NP_077996.1 13357722 876383 complement(201180..201506) 1 NC_002162.1 hypothetical protein 201506 876383 UU165 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077996.1 201180 R 273119 CDS NP_077997.1 13357723 875964 complement(201509..201877) 1 NC_002162.1 hypothetical protein 201877 875964 UU165.2 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077997.1 201509 R 273119 CDS NP_077998.1 13357724 876195 complement(202550..205384) 1 NC_002162.1 hypothetical protein 205384 876195 UU166 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077998.1 202550 R 273119 CDS NP_077999.1 13357725 876406 complement(205362..205721) 1 NC_002162.1 hypothetical protein 205721 876406 UU167 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_077999.1 205362 R 273119 CDS NP_078000.1 13357726 876403 complement(205712..206725) 1 NC_002162.1 hypothetical protein 206725 876403 UU168 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078000.1 205712 R 273119 CDS NP_078001.1 13357727 876407 complement(206715..208160) 1 NC_002162.1 ATP/GTP-binding protein 208160 876407 UU169 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_078001.1 206715 R 273119 CDS NP_078002.1 13357728 875898 complement(208517..208960) 1 NC_002162.1 hypothetical protein 208960 875898 UU170 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078002.1 208517 R 273119 CDS NP_078003.1 13357729 875896 complement(209404..210003) 1 NC_002162.1 hypothetical protein 210003 875896 UU171 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078003.1 209404 R 273119 CDS NP_078004.1 13357730 875900 210378..211877 1 NC_002162.1 MBA N-terminal paralog 211877 875900 UU172 Ureaplasma parvum serovar 3 str. ATCC 700970 MBA N-terminal paralog NP_078004.1 210378 D 273119 CDS NP_078005.1 13357731 875892 complement(211932..214004) 1 NC_002162.1 hypothetical protein 214004 875892 UU173 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078005.1 211932 R 273119 CDS NP_078006.1 13357732 875895 complement(214080..214955) 1 NC_002162.1 hypothetical protein 214955 875895 UU174 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078006.1 214080 R 273119 CDS NP_078007.1 13357733 875821 complement(214981..215982) 1 NC_002162.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 215982 trpS 875821 trpS Ureaplasma parvum serovar 3 str. ATCC 700970 tryptophanyl-tRNA synthetase NP_078007.1 214981 R 273119 CDS NP_078008.1 13357734 875801 216107..216493 1 NC_002162.1 hypothetical protein 216493 875801 UU176 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078008.1 216107 D 273119 CDS NP_078009.1 13357735 875810 216483..217295 1 NC_002162.1 hypothetical protein 217295 875810 UU177 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078009.1 216483 D 273119 CDS NP_078010.1 13357736 875844 217298..217678 1 NC_002162.1 hypothetical protein 217678 875844 UU178 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078010.1 217298 D 273119 CDS NP_078011.1 13357737 875841 217759..217980 1 NC_002162.1 hypothetical protein 217980 875841 UU179 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078011.1 217759 D 273119 CDS NP_078012.1 13357738 875800 complement(217982..218461) 1 NC_002162.1 hypothetical protein 218461 875800 UU180 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078012.1 217982 R 273119 CDS NP_078013.1 13357739 875840 218524..219240 1 NC_002162.1 triosephosphate isomerase 219240 tpiA 875840 tpiA Ureaplasma parvum serovar 3 str. ATCC 700970 triosephosphate isomerase NP_078013.1 218524 D 273119 CDS NP_078014.1 13357740 876207 219257..220765 1 NC_002162.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 220765 pgm 876207 pgm Ureaplasma parvum serovar 3 str. ATCC 700970 phosphoglyceromutase NP_078014.1 219257 D 273119 CDS NP_078015.1 13357741 876391 220812..221687 1 NC_002162.1 hypothetical protein 221687 876391 UU183 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078015.1 220812 D 273119 CDS NP_078016.1 13357742 875866 221790..223112 1 NC_002162.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 223112 eno 875866 eno Ureaplasma parvum serovar 3 str. ATCC 700970 phosphopyruvate hydratase NP_078016.1 221790 D 273119 CDS NP_078017.1 13357743 875859 223081..224046 1 NC_002162.1 6-phosphofructokinase 224046 pfkA 875859 pfkA Ureaplasma parvum serovar 3 str. ATCC 700970 6-phosphofructokinase NP_078017.1 223081 D 273119 CDS NP_078018.1 13357744 875929 224058..225482 1 NC_002162.1 pyruvate kinase 225482 pyk 875929 pyk Ureaplasma parvum serovar 3 str. ATCC 700970 pyruvate kinase NP_078018.1 224058 D 273119 CDS NP_078019.1 13357745 875829 225605..229909 1 NC_002162.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 229909 rpoB 875829 rpoB Ureaplasma parvum serovar 3 str. ATCC 700970 DNA-directed RNA polymerase subunit beta NP_078019.1 225605 D 273119 CDS NP_078020.1 13357746 875923 229931..233848 1 NC_002162.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 233848 rpoC 875923 rpoC Ureaplasma parvum serovar 3 str. ATCC 700970 DNA-directed RNA polymerase subunit beta' NP_078020.1 229931 D 273119 CDS NP_078021.1 13357747 875927 233971..234492 1 NC_002162.1 MBA N-terminal paralog 234492 875927 UU189 Ureaplasma parvum serovar 3 str. ATCC 700970 MBA N-terminal paralog NP_078021.1 233971 D 273119 CDS NP_078022.1 13357748 875879 complement(234566..235216) 1 NC_002162.1 hypothetical protein 235216 875879 UU190 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078022.1 234566 R 273119 CDS NP_078023.1 13357749 875920 complement(235285..235422) 1 NC_002162.1 hypothetical protein 235422 875920 UU191 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078023.1 235285 R 273119 CDS NP_078024.1 13357750 875922 235567..236160 1 NC_002162.1 hypothetical protein 236160 875922 UU192 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078024.1 235567 D 273119 CDS NP_078025.1 13357751 875915 236180..237172 1 NC_002162.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 237172 prsA 875915 prsA Ureaplasma parvum serovar 3 str. ATCC 700970 ribose-phosphate pyrophosphokinase NP_078025.1 236180 D 273119 CDS NP_078026.1 13357752 875827 237179..237718 1 NC_002162.1 hypothetical protein 237718 875827 UU194 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078026.1 237179 D 273119 CDS NP_078027.1 13357753 875834 237722..238561 1 NC_002162.1 hypothetical protein 238561 875834 UU195 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078027.1 237722 D 273119 CDS NP_078028.1 13357754 875875 238563..239789 1 NC_002162.1 recombination factor protein RarA 239789 875875 UU196 Ureaplasma parvum serovar 3 str. ATCC 700970 recombination factor protein RarA NP_078028.1 238563 D 273119 CDS NP_078029.1 13357755 875828 239809..241374 1 NC_002162.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 241374 metS 875828 metS Ureaplasma parvum serovar 3 str. ATCC 700970 methionyl-tRNA synthetase NP_078029.1 239809 D 273119 CDS NP_078030.1 13357756 875930 241462..242634 1 NC_002162.1 hypothetical protein 242634 875930 UU198 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078030.1 241462 D 273119 CDS NP_078031.1 13357757 875824 242634..244829 1 NC_002162.1 phosphate transport system permease 244829 pstA 875824 pstA Ureaplasma parvum serovar 3 str. ATCC 700970 phosphate transport system permease NP_078031.1 242634 D 273119 CDS NP_078032.1 13357758 875865 244834..245823 1 NC_002162.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 245823 pstB 875865 pstB Ureaplasma parvum serovar 3 str. ATCC 700970 phosphate ABC transporter ATP-binding protein NP_078032.1 244834 D 273119 CDS NP_078033.1 13357759 875882 245847..246503 1 NC_002162.1 hypothetical protein 246503 875882 UU201 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078033.1 245847 D 273119 CDS NP_078034.1 13357760 875848 246663..246887 1 NC_002162.1 hypothetical protein 246887 875848 UU202 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078034.1 246663 D 273119 CDS NP_078035.1 13357761 876192 246891..249020 1 NC_002162.1 copper-transporting P-type ATPase 249020 copA 876192 copA Ureaplasma parvum serovar 3 str. ATCC 700970 copper-transporting P-type ATPase NP_078035.1 246891 D 273119 CDS NP_078036.1 13357762 875932 complement(249363..249632) 1 NC_002162.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 249632 rpsO 875932 rpsO Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S15 NP_078036.1 249363 R 273119 CDS NP_078037.1 13357763 875869 complement(249743..250453) 1 NC_002162.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 250453 rnc 875869 rnc Ureaplasma parvum serovar 3 str. ATCC 700970 ribonuclease III NP_078037.1 249743 R 273119 CDS NP_078038.1 13357764 875973 complement(250443..251438) 1 NC_002162.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 251438 plsX 875973 plsX Ureaplasma parvum serovar 3 str. ATCC 700970 putative glycerol-3-phosphate acyltransferase PlsX NP_078038.1 250443 R 273119 CDS NP_078039.1 13357765 875868 complement(251443..253137) 1 NC_002162.1 hypothetical protein 253137 875868 UU207 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078039.1 251443 R 273119 CDS NP_078040.1 13357766 875948 complement(253152..253418) 1 NC_002162.1 hypothetical protein 253418 875948 UU208 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078040.1 253152 R 273119 CDS NP_078041.1 13357767 876187 complement(253523..254161) 1 NC_002162.1 hypothetical protein 254161 876187 UU209 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078041.1 253523 R 273119 CDS NP_078042.1 13357768 875863 254259..254453 1 NC_002162.1 required for 70S ribosome assembly; 50S ribosomal protein L28 254453 rpmB 875863 rpmB Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L28 NP_078042.1 254259 D 273119 CDS NP_078043.1 13357769 876190 complement(254876..255178) 1 NC_002162.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 255178 rpmA 876190 rpmA Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L27 NP_078043.1 254876 R 273119 CDS NP_078044.1 13357770 876151 complement(255184..255492) 1 NC_002162.1 hypothetical protein 255492 876151 UU211 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078044.1 255184 R 273119 CDS NP_078045.1 13357771 875975 complement(255498..255800) 1 NC_002162.1 50S ribosomal protein L21 255800 rplU 875975 rplU Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L21 NP_078045.1 255498 R 273119 CDS NP_078046.1 13357772 876135 256118..256693 1 NC_002162.1 guanylate kinase 256693 gmk 876135 gmk Ureaplasma parvum serovar 3 str. ATCC 700970 guanylate kinase NP_078046.1 256118 D 273119 CDS NP_078047.1 13357773 876182 256674..257684 1 NC_002162.1 hypothetical protein 257684 876182 UU214 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078047.1 256674 D 273119 CDS NP_078048.1 13357774 875974 257688..258431 1 NC_002162.1 protein phosphatase 258431 ptc1 875974 ptc1 Ureaplasma parvum serovar 3 str. ATCC 700970 protein phosphatase NP_078048.1 257688 D 273119 CDS NP_078049.1 13357775 875995 258437..259597 1 NC_002162.1 serine/threonine kinase 259597 pkn 875995 pkn Ureaplasma parvum serovar 3 str. ATCC 700970 serine/threonine kinase NP_078049.1 258437 D 273119 CDS NP_078050.2 161760542 876188 259600..260511 1 NC_002162.1 ATP/GTP-binding protein 260511 876188 UU217 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_078050.2 259600 D 273119 CDS NP_078051.1 13357777 876156 260648..262180 1 NC_002162.1 ammonium transporter 262180 amt-1 876156 amt-1 Ureaplasma parvum serovar 3 str. ATCC 700970 ammonium transporter NP_078051.1 260648 D 273119 CDS NP_078052.1 13357778 876394 262345..263910 1 NC_002162.1 ammonium transporter 263910 amt-2 876394 amt-2 Ureaplasma parvum serovar 3 str. ATCC 700970 ammonium transporter NP_078052.1 262345 D 273119 CDS NP_078053.1 13357779 876205 264020..265306 1 NC_002162.1 membrane lipoprotein 265306 876205 UU220 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078053.1 264020 D 273119 CDS NP_078054.1 13357780 876396 265321..266886 1 NC_002162.1 formate-tetrahydrofolate ligase 266886 fthS 876396 fthS Ureaplasma parvum serovar 3 str. ATCC 700970 formate-tetrahydrofolate ligase NP_078054.1 265321 D 273119 CDS NP_078055.1 13357781 876409 267016..267768 1 NC_002162.1 integrase-recombinase protein 267768 xerC 876409 xerC Ureaplasma parvum serovar 3 str. ATCC 700970 integrase-recombinase protein NP_078055.1 267016 D 273119 CDS NP_078056.1 13357782 875852 268049..270328 1 NC_002162.1 amino acid antiporter 270328 xasA 875852 xasA Ureaplasma parvum serovar 3 str. ATCC 700970 amino acid antiporter NP_078056.1 268049 D 273119 CDS NP_078057.1 13357783 876410 270506..271654 1 NC_002162.1 membrane lipoprotein 271654 876410 UU224 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078057.1 270506 D 273119 CDS NP_078058.1 13357784 876377 271711..272028 1 NC_002162.1 membrane lipoprotein 272028 876377 UU225 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078058.1 271711 D 273119 CDS NP_078059.1 13357785 875792 272143..272481 1 NC_002162.1 membrane lipoprotein 272481 875792 UU225.1 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078059.1 272143 D 273119 CDS NP_078060.1 13357786 875785 272632..274209 1 NC_002162.1 membrane lipoprotein 274209 875785 UU226 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078060.1 272632 D 273119 CDS NP_078061.1 13357787 875813 274434..274970 1 NC_002162.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 274970 infC 875813 infC Ureaplasma parvum serovar 3 str. ATCC 700970 translation initiation factor IF-3 NP_078061.1 274434 D 273119 CDS NP_078062.1 13357788 875789 274985..275179 1 NC_002162.1 50S ribosomal protein L35 275179 rpmI 875789 rpmI Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L35 NP_078062.1 274985 D 273119 CDS NP_078063.1 13357789 875877 275234..275596 1 NC_002162.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 275596 rplT 875877 rplT Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L20 NP_078063.1 275234 D 273119 CDS NP_078064.1 13357790 875818 275815..276120 1 NC_002162.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 276120 rpsJ 875818 rpsJ Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S10 NP_078064.1 275815 D 273119 CDS NP_078065.1 13357791 875843 276145..276846 1 NC_002162.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 276846 rplC 875843 rplC Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L3 NP_078065.1 276145 D 273119 CDS NP_078066.1 13357792 875780 276857..277492 1 NC_002162.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 277492 rplD 875780 rplD Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L4 NP_078066.1 276857 D 273119 CDS NP_078067.1 13357793 876419 277495..277812 1 NC_002162.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 277812 rplW 876419 rplW Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L23 NP_078067.1 277495 D 273119 CDS NP_078068.1 13357794 875816 277866..278705 1 NC_002162.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 278705 rplB 875816 rplB Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L2 NP_078068.1 277866 D 273119 CDS NP_078069.1 13357795 875925 278726..278992 1 NC_002162.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 278992 rpsS 875925 rpsS Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S19 NP_078069.1 278726 D 273119 CDS NP_078070.1 13357796 875945 279014..279949 1 NC_002162.1 ribosomal protein L22 279949 rpL22 875945 rpL22 Ureaplasma parvum serovar 3 str. ATCC 700970 ribosomal protein L22 NP_078070.1 279014 D 273119 CDS NP_078071.1 13357797 875878 279969..280742 1 NC_002162.1 ribosomal protein S3 280742 rpS3 875878 rpS3 Ureaplasma parvum serovar 3 str. ATCC 700970 ribosomal protein S3 NP_078071.1 279969 D 273119 CDS NP_078072.1 13357798 875876 280757..281173 1 NC_002162.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 281173 rplP 875876 rplP Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L16 NP_078072.1 280757 D 273119 CDS NP_078073.1 13357799 875880 281173..281400 1 NC_002162.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 281400 rpL29 875880 rpL29 Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L29 NP_078073.1 281173 D 273119 CDS NP_078074.1 13357800 876197 281400..281654 1 NC_002162.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 281654 rpsQ 876197 rpsQ Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S17 NP_078074.1 281400 D 273119 CDS NP_078075.1 13357801 875835 281674..282042 1 NC_002162.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 282042 rplN 875835 rplN Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L14 NP_078075.1 281674 D 273119 CDS NP_078076.1 13357802 875795 282057..282389 1 NC_002162.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 282389 rplX 875795 rplX Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L24 NP_078076.1 282057 D 273119 CDS NP_078077.1 13357803 875872 282406..282960 1 NC_002162.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 282960 rplE 875872 rplE Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L5 NP_078077.1 282406 D 273119 CDS NP_078078.1 13357804 875781 282964..283149 1 NC_002162.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 283149 rpsN 875781 rpsN Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S14 NP_078078.1 282964 D 273119 CDS NP_078079.1 13357805 875887 283160..283558 1 NC_002162.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 283558 rpsH 875887 rpsH Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S8 NP_078079.1 283160 D 273119 CDS NP_078080.1 13357806 875890 283567..284115 1 NC_002162.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 284115 rplF 875890 rplF Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L6 NP_078080.1 283567 D 273119 CDS NP_078081.1 13357807 876150 284134..284499 1 NC_002162.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 284499 rplR 876150 rplR Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L18 NP_078081.1 284134 D 273119 CDS NP_078082.1 13357808 876369 284517..285128 1 NC_002162.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 285128 rpsE 876369 rpsE Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S5 NP_078082.1 284517 D 273119 CDS NP_078083.1 13357809 875814 285145..285591 1 NC_002162.1 late assembly protein; 50S ribosomal protein L15 285591 rplO 875814 rplO Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L15 NP_078083.1 285145 D 273119 CDS NP_078084.1 13357810 875889 285644..287059 1 NC_002162.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 287059 secY 875889 secY Ureaplasma parvum serovar 3 str. ATCC 700970 preprotein translocase subunit SecY NP_078084.1 285644 D 273119 CDS NP_078085.1 13357811 875891 287068..287709 1 NC_002162.1 adenylate kinase 287709 adk 875891 adk Ureaplasma parvum serovar 3 str. ATCC 700970 adenylate kinase NP_078085.1 287068 D 273119 CDS NP_078086.1 13357812 876200 287734..288483 1 NC_002162.1 methionine aminopeptidase (map) 288483 map 876200 map Ureaplasma parvum serovar 3 str. ATCC 700970 methionine aminopeptidase (map) NP_078086.1 287734 D 273119 CDS NP_078087.1 13357813 875773 288511..288735 1 NC_002162.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 288735 infA 875773 infA Ureaplasma parvum serovar 3 str. ATCC 700970 translation initiation factor IF-1 NP_078087.1 288511 D 273119 CDS NP_078088.1 13357814 875943 288759..288872 1 NC_002162.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 288872 rpmJ 875943 rpmJ Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L36 NP_078088.1 288759 D 273119 CDS NP_078089.1 13357815 875874 288897..289295 1 NC_002162.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 289295 rpsM 875874 rpsM Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S13 NP_078089.1 288897 D 273119 CDS NP_078090.1 13357816 875931 289317..289682 1 NC_002162.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 289682 rpS11 875931 rpS11 Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S11 NP_078090.1 289317 D 273119 CDS NP_078091.1 13357817 875820 289719..290702 1 NC_002162.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 290702 rpoA 875820 rpoA Ureaplasma parvum serovar 3 str. ATCC 700970 DNA-directed RNA polymerase subunit alpha NP_078091.1 289719 D 273119 CDS NP_078092.1 13357818 875946 290730..291089 1 NC_002162.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 291089 rplQ 875946 rplQ Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L17 NP_078092.1 290730 D 273119 CDS NP_078093.1 13357819 875809 291356..293221 1 NC_002162.1 hypothetical protein 293221 875809 UU259 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078093.1 291356 D 273119 CDS NP_078094.1 13357820 875831 293228..294523 1 NC_002162.1 membrane lipoprotein 294523 875831 UU260 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078094.1 293228 D 273119 CDS NP_078095.1 13357821 875798 294590..294997 1 NC_002162.1 hypothetical protein 294997 875798 UU261 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078095.1 294590 D 273119 CDS NP_078096.1 13357822 875826 294987..295574 1 NC_002162.1 hypothetical protein 295574 875826 UU262 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078096.1 294987 D 273119 CDS NP_078097.1 13357823 875796 complement(295582..297366) 1 NC_002162.1 membrane lipoprotein 297366 875796 UU263 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078097.1 295582 R 273119 CDS NP_078098.1 13357824 875790 complement(297577..300525) 1 NC_002162.1 cation-transporting P-type ATPase 300525 pacL 875790 pacL Ureaplasma parvum serovar 3 str. ATCC 700970 cation-transporting P-type ATPase NP_078098.1 297577 R 273119 CDS NP_078099.1 13357825 875778 300712..301041 1 NC_002162.1 hypothetical protein 301041 875778 UU265 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078099.1 300712 D 273119 CDS NP_078100.1 13357826 876204 301046..301672 1 NC_002162.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 301672 engB 876204 engB Ureaplasma parvum serovar 3 str. ATCC 700970 ribosome biogenesis GTP-binding protein YsxC NP_078100.1 301046 D 273119 CDS NP_078101.1 13357827 875953 301653..304277 1 NC_002162.1 valyl-tRNA synthetase 304277 valS 875953 valS Ureaplasma parvum serovar 3 str. ATCC 700970 valyl-tRNA synthetase NP_078101.1 301653 D 273119 CDS NP_078102.1 13357828 876178 304282..304800 1 NC_002162.1 rRNA methylase 304800 spoU-2 876178 spoU-2 Ureaplasma parvum serovar 3 str. ATCC 700970 rRNA methylase NP_078102.1 304282 D 273119 CDS NP_078103.1 13357829 876169 304806..305480 1 NC_002162.1 hypothetical protein 305480 876169 UU269 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078103.1 304806 D 273119 CDS NP_078104.1 13357830 876371 305728..306399 1 NC_002162.1 hypothetical protein 306399 876371 UU270 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078104.1 305728 D 273119 CDS NP_078105.1 13357831 876385 306447..307820 1 NC_002162.1 hypothetical protein 307820 876385 UU271 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078105.1 306447 D 273119 CDS NP_078106.1 13357832 875954 307798..308256 1 NC_002162.1 HIT protein 308256 hit 875954 hit Ureaplasma parvum serovar 3 str. ATCC 700970 HIT protein NP_078106.1 307798 D 273119 CDS NP_078107.1 13357833 876163 308266..309021 1 NC_002162.1 hypothetical protein 309021 876163 UU273 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078107.1 308266 D 273119 CDS NP_078108.1 13357834 876180 complement(309018..310082) 1 NC_002162.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 310082 hemN 876180 hemN Ureaplasma parvum serovar 3 str. ATCC 700970 coproporphyrinogen III oxidase NP_078108.1 309018 R 273119 CDS NP_078109.1 13357835 876170 310489..311034 1 NC_002162.1 membrane lipoprotein 311034 876170 UU275 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078109.1 310489 D 273119 CDS NP_078110.1 13357836 876162 311037..312128 1 NC_002162.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 312128 876162 UU276 Ureaplasma parvum serovar 3 str. ATCC 700970 nicotinate phosphoribosyltransferase NP_078110.1 311037 D 273119 CDS NP_078111.1 13357837 876172 312204..312371 1 NC_002162.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 312371 rpsU 876172 rpsU Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S21 NP_078111.1 312204 D 273119 CDS NP_078112.1 13357838 876142 312495..314147 1 NC_002162.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 314147 argS 876142 argS Ureaplasma parvum serovar 3 str. ATCC 700970 arginyl-tRNA synthetase NP_078112.1 312495 D 273119 CDS NP_078113.1 13357839 876401 314150..315418 1 NC_002162.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 315418 pgk 876401 pgk Ureaplasma parvum serovar 3 str. ATCC 700970 phosphoglycerate kinase NP_078113.1 314150 D 273119 CDS NP_078114.1 13357840 875779 315422..316513 1 NC_002162.1 endo-1,4-beta-glucanase 316513 celM 875779 celM Ureaplasma parvum serovar 3 str. ATCC 700970 endo-1,4-beta-glucanase NP_078114.1 315422 D 273119 CDS NP_078115.1 13357841 875802 316587..317306 1 NC_002162.1 purine-nucleoside phosphorylase 317306 deoD 875802 deoD Ureaplasma parvum serovar 3 str. ATCC 700970 purine-nucleoside phosphorylase NP_078115.1 316587 D 273119 CDS NP_078116.1 13357842 875782 317402..317794 1 NC_002162.1 DNA-binding protein HU-alpha (HU-2) 317794 hupA 875782 hupA Ureaplasma parvum serovar 3 str. ATCC 700970 DNA-binding protein HU-alpha (HU-2) NP_078116.1 317402 D 273119 CDS NP_078117.1 13357843 875851 317894..320050 1 NC_002162.1 ppGpp 3'-pyrophosphohydrolase 320050 spoT/relA 875851 spoT/relA Ureaplasma parvum serovar 3 str. ATCC 700970 ppGpp 3'-pyrophosphohydrolase NP_078117.1 317894 D 273119 CDS NP_078118.1 13357844 875830 320035..321663 1 NC_002162.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 321663 pyrG 875830 pyrG Ureaplasma parvum serovar 3 str. ATCC 700970 CTP synthetase NP_078118.1 320035 D 273119 CDS NP_078119.1 13357845 875784 321667..322929 1 NC_002162.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 322929 hisS 875784 hisS Ureaplasma parvum serovar 3 str. ATCC 700970 histidyl-tRNA synthetase NP_078119.1 321667 D 273119 CDS NP_078120.1 13357846 876423 322935..324671 1 NC_002162.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 324671 aspS 876423 aspS Ureaplasma parvum serovar 3 str. ATCC 700970 aspartyl-tRNA synthetase NP_078120.1 322935 D 273119 CDS NP_078121.1 13357847 876422 324664..325269 1 NC_002162.1 hypothetical protein 325269 876422 UU287 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078121.1 324664 D 273119 CDS NP_078122.1 13357848 876421 325346..325501 1 NC_002162.1 hypothetical protein 325501 876421 UU288 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078122.1 325346 D 273119 CDS NP_078123.1 13357849 875936 325542..326039 1 NC_002162.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 326039 msrA 875936 msrA Ureaplasma parvum serovar 3 str. ATCC 700970 methionine sulfoxide reductase A NP_078123.1 325542 D 273119 CDS NP_078124.1 13357850 876420 complement(326075..326665) 1 NC_002162.1 hypothetical protein 326665 876420 UU290 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078124.1 326075 R 273119 CDS NP_078125.1 13357851 875873 complement(326672..327160) 1 NC_002162.1 glutathione peroxidase 327160 bsaA 875873 bsaA Ureaplasma parvum serovar 3 str. ATCC 700970 glutathione peroxidase NP_078125.1 326672 R 273119 CDS NP_078126.1 13357852 875788 327482..332974 1 NC_002162.1 hypothetical protein 332974 875788 UU292 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078126.1 327482 D 273119 CDS NP_078127.1 13357853 875944 333303..337646 1 NC_002162.1 hypothetical protein 337646 875944 UU293 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078127.1 333303 D 273119 CDS NP_078128.1 13357854 875836 338037..338642 1 NC_002162.1 hypothetical protein 338642 875836 UU294 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078128.1 338037 D 273119 CDS NP_078129.1 13357855 875976 338652..339362 1 NC_002162.1 hypothetical protein 339362 875976 UU295 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078129.1 338652 D 273119 CDS NP_078130.1 13357856 875967 339329..340069 1 NC_002162.1 hypothetical protein 340069 875967 UU296 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078130.1 339329 D 273119 CDS NP_078131.1 13357857 875996 complement(340066..340578) 1 NC_002162.1 hypothetical protein 340578 875996 UU297 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078131.1 340066 R 273119 CDS NP_078132.1 13357858 876374 340721..341287 1 NC_002162.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 341287 efp 876374 efp Ureaplasma parvum serovar 3 str. ATCC 700970 elongation factor P NP_078132.1 340721 D 273119 CDS NP_078133.1 13357859 876388 341290..341592 1 NC_002162.1 hypothetical protein 341592 876388 UU299 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078133.1 341290 D 273119 CDS NP_078134.1 13357860 876053 341595..341978 1 NC_002162.1 transcription termination factor 341978 nusB 876053 nusB Ureaplasma parvum serovar 3 str. ATCC 700970 transcription termination factor NP_078134.1 341595 D 273119 CDS NP_078135.1 13357861 876139 341984..342688 1 NC_002162.1 hypothetical protein 342688 876139 UU301 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078135.1 341984 D 273119 CDS NP_078136.1 13357862 876140 342715..343077 1 NC_002162.1 hypothetical protein 343077 876140 UU302 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078136.1 342715 D 273119 CDS NP_078137.1 13357863 876367 343161..343661 1 NC_002162.1 hypothetical protein 343661 876367 UU303 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078137.1 343161 D 273119 CDS NP_078138.1 13357864 876196 348924..349394 1 NC_002162.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 349394 greA 876196 greA Ureaplasma parvum serovar 3 str. ATCC 700970 transcription elongation factor GreA NP_078138.1 348924 D 273119 CDS NP_078139.1 13357865 875881 350065..350832 1 NC_002162.1 hypothetical protein 350832 875881 UU305 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078139.1 350065 D 273119 CDS NP_078140.1 13357866 875805 350885..351796 1 NC_002162.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 351796 nfo 875805 nfo Ureaplasma parvum serovar 3 str. ATCC 700970 endonuclease IV NP_078140.1 350885 D 273119 CDS NP_078141.1 13357867 875871 complement(352030..352980) 1 NC_002162.1 ATP/GTP-binding protein 352980 875871 UU307 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_078141.1 352030 R 273119 CDS NP_078142.1 13357868 875776 complement(352983..354128) 1 NC_002162.1 hypothetical protein 354128 875776 UU308 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078142.1 352983 R 273119 CDS NP_078143.1 13357869 876025 354465..355025 1 NC_002162.1 hypothetical protein 355025 876025 UU309 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078143.1 354465 D 273119 CDS NP_078144.1 13357870 876141 complement(355093..355347) 1 NC_002162.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 355347 rpsT 876141 rpsT Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S20 NP_078144.1 355093 R 273119 CDS NP_078145.1 13357871 876201 complement(355936..356376) 1 NC_002162.1 N-acetyltransferase complex, ribosomal protein-alanine-acetyltransferase subunit 356376 ard1 876201 ard1 Ureaplasma parvum serovar 3 str. ATCC 700970 N-acetyltransferase complex, ribosomal protein-alanine-acetyltransferase subunit NP_078145.1 355936 R 273119 CDS NP_078146.1 13357872 876393 complement(356354..356929) 1 NC_002162.1 hypothetical protein 356929 876393 UU312 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078146.1 356354 R 273119 CDS NP_078147.1 13357873 875897 complement(356922..357821) 1 NC_002162.1 pseudouridine synthase (uracil hydrolase) 357821 rluD 875897 rluD Ureaplasma parvum serovar 3 str. ATCC 700970 pseudouridine synthase (uracil hydrolase) NP_078147.1 356922 R 273119 CDS NP_078148.1 13357874 875885 complement(357824..358615) 1 NC_002162.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 358615 lspA 875885 lspA Ureaplasma parvum serovar 3 str. ATCC 700970 lipoprotein signal peptidase NP_078148.1 357824 R 273119 CDS NP_078149.1 13357875 875908 complement(358615..359160) 1 NC_002162.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 359160 ppa 875908 ppa Ureaplasma parvum serovar 3 str. ATCC 700970 inorganic pyrophosphatase NP_078149.1 358615 R 273119 CDS NP_078150.1 13357876 875849 359326..359706 1 NC_002162.1 hypothetical protein 359706 875849 UU316 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078150.1 359326 D 273119 CDS NP_078151.1 13357877 875933 359915..364642 1 NC_002162.1 hypothetical protein 364642 875933 UU317 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078151.1 359915 D 273119 CDS NP_078152.1 13357878 875808 364755..366131 1 NC_002162.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 366131 nusA 875808 nusA Ureaplasma parvum serovar 3 str. ATCC 700970 transcription elongation factor NusA NP_078152.1 364755 D 273119 CDS NP_078153.1 13357879 876155 366142..366393 1 NC_002162.1 hypothetical protein 366393 876155 UU319 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078153.1 366142 D 273119 CDS NP_078154.1 13357880 875787 366428..368272 1 NC_002162.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 368272 infB 875787 infB Ureaplasma parvum serovar 3 str. ATCC 700970 translation initiation factor IF-2 NP_078154.1 366428 D 273119 CDS NP_078155.1 13357881 875811 368280..368630 1 NC_002162.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 368630 rbfA 875811 rbfA Ureaplasma parvum serovar 3 str. ATCC 700970 ribosome-binding factor A NP_078155.1 368280 D 273119 CDS NP_078156.1 13357882 875791 368578..369048 1 NC_002162.1 membrane lipoprotein 369048 875791 UU322 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078156.1 368578 D 273119 CDS NP_078157.1 13357883 875850 complement(369128..369823) 1 NC_002162.1 hypothetical protein 369823 875850 UU323 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078157.1 369128 R 273119 CDS NP_078158.1 13357884 875883 complement(369836..371635) 1 NC_002162.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 371635 lepA 875883 lepA Ureaplasma parvum serovar 3 str. ATCC 700970 GTP-binding protein LepA NP_078158.1 369836 R 273119 CDS NP_078159.1 13357885 875856 complement(371753..372412) 1 NC_002162.1 hypothetical protein 372412 875856 UU325 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078159.1 371753 R 273119 CDS NP_078160.1 13357886 875858 372558..372917 1 NC_002162.1 hypothetical protein 372917 875858 UU326 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078160.1 372558 D 273119 CDS NP_078161.1 13357887 875861 372921..373694 1 NC_002162.1 rRNA methylase 373694 spoU-3 875861 spoU-3 Ureaplasma parvum serovar 3 str. ATCC 700970 rRNA methylase NP_078161.1 372921 D 273119 CDS NP_078162.1 13357888 875870 373678..374622 1 NC_002162.1 hypothetical protein 374622 875870 UU328 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078162.1 373678 D 273119 CDS NP_078163.1 13357889 875888 374779..376047 1 NC_002162.1 hypothetical protein 376047 875888 UU329 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078163.1 374779 D 273119 CDS NP_078164.1 13357890 875893 376048..377031 1 NC_002162.1 hypothetical protein 377031 875893 UU330 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078164.1 376048 D 273119 CDS NP_078165.1 13357891 875903 complement(377760..378062) 1 NC_002162.1 hypothetical protein 378062 875903 UU331 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078165.1 377760 R 273119 CDS NP_078166.1 13357892 875905 complement(378091..378714) 1 NC_002162.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 378714 udk 875905 udk Ureaplasma parvum serovar 3 str. ATCC 700970 uridine kinase NP_078166.1 378091 R 273119 CDS NP_078167.1 13357893 875906 378900..379073 1 NC_002162.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 379073 rpmF 875906 rpmF Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L32 NP_078167.1 378900 D 273119 CDS NP_078168.1 13357894 875909 379079..379339 1 NC_002162.1 hypothetical protein 379339 875909 UU334 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078168.1 379079 D 273119 CDS NP_078169.1 13357895 875924 379425..381467 1 NC_002162.1 hypothetical protein 381467 875924 UU335 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078169.1 379425 D 273119 CDS NP_078170.1 13357896 875794 381491..382798 1 NC_002162.1 hypothetical protein 382798 875794 UU336 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078170.1 381491 D 273119 CDS NP_078171.1 13357897 876424 382856..383665 1 NC_002162.1 methylenetetrahydrofolate dehydrogenase 383665 folD 876424 folD Ureaplasma parvum serovar 3 str. ATCC 700970 methylenetetrahydrofolate dehydrogenase NP_078171.1 382856 D 273119 CDS NP_078172.1 13357898 875928 383742..385628 1 NC_002162.1 hypothetical protein 385628 875928 UU338 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078172.1 383742 D 273119 CDS NP_078173.1 13357899 875822 385804..387615 1 NC_002162.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 387615 dnaK 875822 dnaK Ureaplasma parvum serovar 3 str. ATCC 700970 molecular chaperone DnaK NP_078173.1 385804 D 273119 CDS NP_078174.1 13357900 875832 387667..388833 1 NC_002162.1 hypothetical protein 388833 875832 UU340 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078174.1 387667 D 273119 CDS NP_078175.1 13357901 876029 388870..389445 1 NC_002162.1 hypothetical protein 389445 876029 UU341 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078175.1 388870 D 273119 CDS NP_078176.1 13357902 876147 389445..390119 1 NC_002162.1 cytidylate kinase 390119 cmk 876147 cmk Ureaplasma parvum serovar 3 str. ATCC 700970 cytidylate kinase NP_078176.1 389445 D 273119 CDS NP_078177.1 13357903 876400 390196..390483 1 NC_002162.1 hypothetical protein 390483 876400 UU343 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078177.1 390196 D 273119 CDS NP_078178.1 13357904 875846 390535..391329 1 NC_002162.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 391329 plsC 875846 plsC Ureaplasma parvum serovar 3 str. ATCC 700970 1-acyl-sn-glycerol-3-phosphate acyltransferase NP_078178.1 390535 D 273119 CDS NP_078179.1 13357905 875847 391461..392345 1 NC_002162.1 hypothetical protein 392345 875847 UU345 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078179.1 391461 D 273119 CDS NP_078180.1 13357906 875786 392338..393432 1 NC_002162.1 hypothetical protein 393432 875786 UU346 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078180.1 392338 D 273119 CDS NP_078181.1 13357907 875950 393527..394876 1 NC_002162.1 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) 394876 tig 875950 tig Ureaplasma parvum serovar 3 str. ATCC 700970 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) NP_078181.1 393527 D 273119 CDS NP_078182.1 13357908 876402 395023..397398 1 NC_002162.1 ATP-dependent protease 397398 lon 876402 lon Ureaplasma parvum serovar 3 str. ATCC 700970 ATP-dependent protease NP_078182.1 395023 D 273119 CDS NP_078183.1 13357909 875941 397484..398830 1 NC_002162.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 398830 rpoD 875941 rpoD Ureaplasma parvum serovar 3 str. ATCC 700970 RNA polymerase sigma factor NP_078183.1 397484 D 273119 CDS NP_078184.1 13357910 876033 398814..399479 1 NC_002162.1 hypothetical protein 399479 876033 UU350 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078184.1 398814 D 273119 CDS NP_078185.1 13357911 875934 399460..400248 1 NC_002162.1 hypothetical protein 400248 875934 UU351 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078185.1 399460 D 273119 CDS NP_078186.1 13357912 875942 complement(400278..400607) 1 NC_002162.1 hypothetical protein 400607 875942 UU352 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078186.1 400278 R 273119 CDS NP_078187.1 13357913 876368 complement(400834..401748) 1 NC_002162.1 membrane lipoprotein 401748 876368 UU353 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078187.1 400834 R 273119 CDS NP_078188.1 13357914 875949 401965..402648 1 NC_002162.1 tRNA pseudouridine 55 synthase 402648 truB 875949 truB Ureaplasma parvum serovar 3 str. ATCC 700970 tRNA pseudouridine 55 synthase NP_078188.1 401965 D 273119 CDS NP_078189.1 13357915 876019 402614..403465 1 NC_002162.1 riboflavin kinase/FAD synthetase 403465 ribF 876019 ribF Ureaplasma parvum serovar 3 str. ATCC 700970 riboflavin kinase/FAD synthetase NP_078189.1 402614 D 273119 CDS NP_078190.1 13357916 875989 403539..405275 1 NC_002162.1 ATP/GTP-binding protein 405275 875989 UU356 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_078190.1 403539 D 273119 CDS NP_078191.1 13357917 876275 405290..406360 1 NC_002162.1 citrate-dependent iron transport, membrane-bound protein 406360 fecD 876275 fecD Ureaplasma parvum serovar 3 str. ATCC 700970 citrate-dependent iron transport, membrane-bound protein NP_078191.1 405290 D 273119 CDS NP_078192.1 13357918 876274 406366..407469 1 NC_002162.1 ferrichrome ABC transporter 407469 fatC-2 876274 fatC-2 Ureaplasma parvum serovar 3 str. ATCC 700970 ferrichrome ABC transporter NP_078192.1 406366 D 273119 CDS NP_078193.1 13357919 876018 407618..409252 1 NC_002162.1 putative ABC substrate-binding protein - iron 409252 ABCsbp-5 876018 ABCsbp-5 Ureaplasma parvum serovar 3 str. ATCC 700970 putative ABC substrate-binding protein - iron NP_078193.1 407618 D 273119 CDS NP_078194.1 13357920 876276 409345..410979 1 NC_002162.1 putative ABC substrate-binding protein - iron 410979 ABCsbp-6 876276 ABCsbp-6 Ureaplasma parvum serovar 3 str. ATCC 700970 putative ABC substrate-binding protein - iron NP_078194.1 409345 D 273119 CDS NP_078195.1 13357921 876277 411137..411661 1 NC_002162.1 membrane lipoprotein 411661 876277 UU361 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078195.1 411137 D 273119 CDS NP_078196.1 13357922 876021 complement(411703..413130) 1 NC_002162.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 413130 gapN 876021 gapN Ureaplasma parvum serovar 3 str. ATCC 700970 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase NP_078196.1 411703 R 273119 CDS NP_078197.1 13357923 876278 complement(413162..414151) 1 NC_002162.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 414151 asnA 876278 asnA Ureaplasma parvum serovar 3 str. ATCC 700970 asparagine synthetase AsnA NP_078197.1 413162 R 273119 CDS NP_078198.1 13357924 876279 complement(414129..414785) 1 NC_002162.1 phosphatidylglycerophosphate synthase 414785 psgA 876279 psgA Ureaplasma parvum serovar 3 str. ATCC 700970 phosphatidylglycerophosphate synthase NP_078198.1 414129 R 273119 CDS NP_078199.1 13357925 876026 complement(414766..416130) 1 NC_002162.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 416130 asnC 876026 asnC Ureaplasma parvum serovar 3 str. ATCC 700970 asparaginyl-tRNA synthetase NP_078199.1 414766 R 273119 CDS NP_078200.1 13357926 876015 complement(416224..416859) 1 NC_002162.1 hypothetical protein 416859 876015 UU366 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078200.1 416224 R 273119 CDS NP_078201.1 13357927 876031 complement(416987..418510) 1 NC_002162.1 hypothetical protein 418510 876031 UU367 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078201.1 416987 R 273119 CDS NP_078202.1 13357928 876030 418752..420053 1 NC_002162.1 thymidine phosphorylase 420053 deoA 876030 deoA Ureaplasma parvum serovar 3 str. ATCC 700970 thymidine phosphorylase NP_078202.1 418752 D 273119 CDS NP_078203.1 13357929 876017 420084..422804 1 NC_002162.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 422804 alaS 876017 alaS Ureaplasma parvum serovar 3 str. ATCC 700970 alanyl-tRNA synthetase NP_078203.1 420084 D 273119 CDS NP_078204.1 13357930 876020 422797..423240 1 NC_002162.1 hypothetical protein 423240 876020 UU370 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078204.1 422797 D 273119 CDS NP_078205.1 13357931 876032 423256..425676 1 NC_002162.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 425676 leuS 876032 leuS Ureaplasma parvum serovar 3 str. ATCC 700970 leucyl-tRNA synthetase NP_078205.1 423256 D 273119 CDS NP_078206.1 13357932 876022 complement(425870..426493) 1 NC_002162.1 integrase-recombinase protein 426493 tnp-1 876022 tnp-1 Ureaplasma parvum serovar 3 str. ATCC 700970 integrase-recombinase protein NP_078206.1 425870 R 273119 CDS NP_078207.1 13357933 876384 complement(426713..426817) 1 NC_002162.1 hypothetical protein 426817 876384 UU373 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078207.1 426713 R 273119 CDS NP_078208.1 13357934 876001 complement(426887..427114) 1 NC_002162.1 hypothetical protein 427114 876001 UU374 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078208.1 426887 R 273119 CDS NP_078209.1 13357935 876273 complement(427313..428560) 1 NC_002162.1 multiple banded antigen 428560 MBA 876273 MBA Ureaplasma parvum serovar 3 str. ATCC 700970 multiple banded antigen NP_078209.1 427313 R 273119 CDS NP_078210.1 13357936 876272 complement(429225..429953) 1 NC_002162.1 hypothetical protein 429953 876272 UU376 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078210.1 429225 R 273119 CDS NP_078211.1 13357937 876271 430144..434472 1 NC_002162.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 434472 polC 876271 polC Ureaplasma parvum serovar 3 str. ATCC 700970 DNA polymerase III PolC NP_078211.1 430144 D 273119 CDS NP_078212.1 13357938 876270 434587..436227 1 NC_002162.1 membrane lipoprotein 436227 876270 UU378 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078212.1 434587 D 273119 CDS NP_078213.1 13357939 876269 complement(436307..436858) 1 NC_002162.1 hypothetical protein 436858 876269 UU379 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078213.1 436307 R 273119 CDS NP_078214.1 13357940 876268 complement(436833..437111) 1 NC_002162.1 hypothetical protein 437111 876268 UU379.1 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078214.1 436833 R 273119 CDS NP_078215.1 13357941 876267 complement(437111..437617) 1 NC_002162.1 hypothetical protein 437617 876267 UU380 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078215.1 437111 R 273119 CDS NP_078216.1 13357942 876266 complement(437785..439539) 1 NC_002162.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 439539 uvrC 876266 uvrC Ureaplasma parvum serovar 3 str. ATCC 700970 excinuclease ABC subunit C NP_078216.1 437785 R 273119 CDS NP_078217.1 13357943 876265 complement(439539..440513) 1 NC_002162.1 NAD+ dependent glycerol-3-phosphate dehydrogenase 440513 gpsA 876265 gpsA Ureaplasma parvum serovar 3 str. ATCC 700970 NAD+ dependent glycerol-3-phosphate dehydrogenase NP_078217.1 439539 R 273119 CDS NP_078218.1 13357944 876264 complement(440521..441849) 1 NC_002162.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 441849 engA 876264 engA Ureaplasma parvum serovar 3 str. ATCC 700970 GTP-binding protein EngA NP_078218.1 440521 R 273119 CDS NP_078219.1 13357945 876263 441985..443082 1 NC_002162.1 membrane lipoprotein 443082 876263 UU384 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078219.1 441985 D 273119 CDS NP_078220.1 13357946 876262 443158..443595 1 NC_002162.1 hypothetical protein 443595 876262 UU385 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078220.1 443158 D 273119 CDS NP_078221.1 13357947 876261 443585..444511 1 NC_002162.1 S-adenosyl-methyltransferase MraW 444511 mraW 876261 mraW Ureaplasma parvum serovar 3 str. ATCC 700970 S-adenosyl-methyltransferase MraW NP_078221.1 443585 D 273119 CDS NP_078222.1 13357948 876260 444530..445711 1 NC_002162.1 hypothetical protein 445711 876260 UU387 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078222.1 444530 D 273119 CDS NP_078223.1 13357949 876259 445807..446682 1 NC_002162.1 hypothetical protein 446682 876259 UU388 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078223.1 445807 D 273119 CDS NP_078224.1 13357950 876258 446687..450541 1 NC_002162.1 ATP/GTP-binding protein 450541 876258 UU389 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_078224.1 446687 D 273119 CDS NP_078225.1 13357951 876257 450602..451417 1 NC_002162.1 hypothetical protein 451417 876257 UU390 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078225.1 450602 D 273119 CDS NP_078226.1 13357952 876256 451524..453638 1 NC_002162.1 ATP-dependent serine proteinase - heat shock protein 453638 clpB 876256 clpB Ureaplasma parvum serovar 3 str. ATCC 700970 ATP-dependent serine proteinase - heat shock protein NP_078226.1 451524 D 273119 CDS NP_078227.1 13357953 876255 453792..455576 1 NC_002162.1 hypothetical protein 455576 876255 UU392 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078227.1 453792 D 273119 CDS NP_078228.1 13357954 876254 complement(455606..455953) 1 NC_002162.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 455953 acpS 876254 acpS Ureaplasma parvum serovar 3 str. ATCC 700970 4'-phosphopantetheinyl transferase NP_078228.1 455606 R 273119 CDS NP_078229.1 13357955 876253 complement(455958..456257) 1 NC_002162.1 hypothetical protein 456257 876253 UU394 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078229.1 455958 R 273119 CDS NP_078230.1 13357956 876252 complement(456308..456589) 1 NC_002162.1 hypothetical protein 456589 876252 UU395 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078230.1 456308 R 273119 CDS NP_078231.1 13357957 876251 complement(456591..456869) 1 NC_002162.1 hypothetical protein 456869 876251 UU396 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078231.1 456591 R 273119 CDS NP_078232.1 13357958 876250 complement(456919..457869) 1 NC_002162.1 ribonuclease HII 457869 rnhB 876250 rnhB Ureaplasma parvum serovar 3 str. ATCC 700970 ribonuclease HII NP_078232.1 456919 R 273119 CDS NP_078233.1 13357959 876249 457969..458574 1 NC_002162.1 hypothetical protein 458574 876249 UU398 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078233.1 457969 D 273119 CDS NP_078234.1 13357960 876248 complement(458667..459713) 1 NC_002162.1 hemin permease 459713 hmuU-2 876248 hmuU-2 Ureaplasma parvum serovar 3 str. ATCC 700970 hemin permease NP_078234.1 458667 R 273119 CDS NP_078235.1 13357961 876247 complement(459716..460735) 1 NC_002162.1 ferrichrome ABC transporter (permease) 460735 fatD-2 876247 fatD-2 Ureaplasma parvum serovar 3 str. ATCC 700970 ferrichrome ABC transporter (permease) NP_078235.1 459716 R 273119 CDS NP_078236.1 13357962 876246 complement(460746..462251) 1 NC_002162.1 putative ABC substrate-binding protein - iron 462251 ABCsbp-7 876246 ABCsbp-7 Ureaplasma parvum serovar 3 str. ATCC 700970 putative ABC substrate-binding protein - iron NP_078236.1 460746 R 273119 CDS NP_078237.1 13357963 876245 complement(462275..463432) 1 NC_002162.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 463432 mnmA 876245 mnmA Ureaplasma parvum serovar 3 str. ATCC 700970 tRNA-specific 2-thiouridylase MnmA NP_078237.1 462275 R 273119 CDS NP_078238.1 13357964 876244 463541..464437 1 NC_002162.1 hypothetical protein 464437 876244 UU403 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078238.1 463541 D 273119 CDS NP_078239.1 13357965 876243 complement(464668..465474) 1 NC_002162.1 integrase-recombinase protein 465474 tnp-2 876243 tnp-2 Ureaplasma parvum serovar 3 str. ATCC 700970 integrase-recombinase protein NP_078239.1 464668 R 273119 CDS NP_078240.1 13357966 876242 complement(465534..466307) 1 NC_002162.1 membrane protein 466307 876242 UU405 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane protein NP_078240.1 465534 R 273119 CDS NP_078241.1 13357967 876241 466522..467718 1 NC_002162.1 hypothetical protein 467718 876241 UU405.1 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078241.1 466522 D 273119 CDS NP_078242.1 13357968 876240 complement(467811..468467) 1 NC_002162.1 heat shock protein 468467 grpE 876240 grpE Ureaplasma parvum serovar 3 str. ATCC 700970 heat shock protein NP_078242.1 467811 R 273119 CDS NP_078243.1 13357969 876239 complement(468467..469594) 1 NC_002162.1 heat shock protein 469594 dnaJ 876239 dnaJ Ureaplasma parvum serovar 3 str. ATCC 700970 heat shock protein NP_078243.1 468467 R 273119 CDS NP_078244.1 13357970 876238 complement(469722..470171) 1 NC_002162.1 hypothetical protein 470171 876238 UU408 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078244.1 469722 R 273119 CDS NP_078245.1 13357971 876237 complement(470152..471072) 1 NC_002162.1 lipoprotein 471072 876237 UU409 Ureaplasma parvum serovar 3 str. ATCC 700970 lipoprotein NP_078245.1 470152 R 273119 CDS NP_078246.1 13357972 876236 471224..473926 1 NC_002162.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 473926 ileS 876236 ileS Ureaplasma parvum serovar 3 str. ATCC 700970 isoleucyl-tRNA synthetase NP_078246.1 471224 D 273119 CDS NP_078247.1 13357973 876235 473930..474892 1 NC_002162.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 474892 gcp 876235 gcp Ureaplasma parvum serovar 3 str. ATCC 700970 putative DNA-binding/iron metalloprotein/AP endonuclease NP_078247.1 473930 D 273119 CDS NP_078248.1 13357974 876234 474916..476046 1 NC_002162.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 476046 metK 876234 metK Ureaplasma parvum serovar 3 str. ATCC 700970 S-adenosylmethionine synthetase NP_078248.1 474916 D 273119 CDS NP_078249.1 13357975 876232 complement(476249..477076) 1 NC_002162.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 477076 fpg 876232 fpg Ureaplasma parvum serovar 3 str. ATCC 700970 formamidopyrimidine-DNA glycosylase NP_078249.1 476249 R 273119 CDS NP_078250.1 13357976 876231 complement(477118..477987) 1 NC_002162.1 DNA polymerase I 477987 polA 876231 polA Ureaplasma parvum serovar 3 str. ATCC 700970 DNA polymerase I NP_078250.1 477118 R 273119 CDS NP_078251.1 13357977 876230 complement(477991..480900) 1 NC_002162.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand; in the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 480900 dnaE 876230 dnaE Ureaplasma parvum serovar 3 str. ATCC 700970 DNA polymerase III DnaE NP_078251.1 477991 R 273119 CDS NP_078252.1 13357978 876229 complement(480900..481112) 1 NC_002162.1 hypothetical protein 481112 876229 UU416 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078252.1 480900 R 273119 CDS NP_078253.1 13357979 876228 complement(481197..482162) 1 NC_002162.1 hypothetical protein 482162 876228 UU417 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078253.1 481197 R 273119 CDS NP_078254.1 13357980 876227 complement(482180..483352) 1 NC_002162.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 483352 thiI 876227 thiI Ureaplasma parvum serovar 3 str. ATCC 700970 thiamine biosynthesis protein ThiI NP_078254.1 482180 R 273119 CDS NP_078255.1 13357981 876226 complement(483330..484196) 1 NC_002162.1 hypothetical protein 484196 876226 UU419 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078255.1 483330 R 273119 CDS NP_078256.1 13357982 876225 484311..485057 1 NC_002162.1 hypothetical protein 485057 876225 UU420 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078256.1 484311 D 273119 CDS NP_078257.1 13357983 876224 485044..486117 1 NC_002162.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 486117 hrcA 876224 hrcA Ureaplasma parvum serovar 3 str. ATCC 700970 heat-inducible transcription repressor NP_078257.1 485044 D 273119 CDS NP_078258.1 13357984 876223 486107..486610 1 NC_002162.1 hypothetical protein 486610 876223 UU422 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078258.1 486107 D 273119 CDS NP_078259.1 13357985 876222 486622..487332 1 NC_002162.1 hypothetical protein 487332 876222 UU423 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078259.1 486622 D 273119 CDS NP_078260.1 13357986 876221 487280..488089 1 NC_002162.1 hypothetical protein 488089 876221 UU424 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078260.1 487280 D 273119 CDS NP_078261.1 13357987 876220 complement(488247..488522) 1 NC_002162.1 hypothetical protein 488522 876220 UU424.1 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078261.1 488247 R 273119 CDS NP_078262.1 13357988 876219 488695..489372 1 NC_002162.1 hypothetical protein 489372 876219 UU425 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078262.1 488695 D 273119 CDS NP_078263.1 13357989 876218 489429..489980 1 NC_002162.1 hypothetical protein 489980 876218 UU426 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078263.1 489429 D 273119 CDS NP_078264.1 13357990 876217 complement(490192..490704) 1 NC_002162.1 hypothetical protein 490704 876217 UU427 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078264.1 490192 R 273119 CDS NP_078265.1 13357991 876216 complement(490811..491674) 1 NC_002162.1 urease complex component 491674 ureD 876216 ureD Ureaplasma parvum serovar 3 str. ATCC 700970 urease complex component NP_078265.1 490811 R 273119 CDS NP_078266.1 13357992 876215 complement(491684..492304) 1 NC_002162.1 urease complex component 492304 ureG 876215 ureG Ureaplasma parvum serovar 3 str. ATCC 700970 urease complex component NP_078266.1 491684 R 273119 CDS NP_078267.1 13357993 876214 complement(492386..493138) 1 NC_002162.1 urease complex component 493138 ureF 876214 ureF Ureaplasma parvum serovar 3 str. ATCC 700970 urease complex component NP_078267.1 492386 R 273119 CDS NP_078268.1 13357994 876213 complement(493080..493529) 1 NC_002162.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 493529 ureE 876213 ureE Ureaplasma parvum serovar 3 str. ATCC 700970 urease accessory protein UreE NP_078268.1 493080 R 273119 CDS NP_078269.1 13357995 876212 complement(493594..495390) 1 NC_002162.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 495390 ureC 876212 ureC Ureaplasma parvum serovar 3 str. ATCC 700970 urease subunit alpha NP_078269.1 493594 R 273119 CDS NP_078270.1 13357996 876211 complement(495436..495810) 1 NC_002162.1 urease complex component 495810 ureB 876211 ureB Ureaplasma parvum serovar 3 str. ATCC 700970 urease complex component NP_078270.1 495436 R 273119 CDS NP_078271.1 13357997 876210 complement(495857..496162) 1 NC_002162.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 496162 ureA 876210 ureA Ureaplasma parvum serovar 3 str. ATCC 700970 urease subunit gamma NP_078271.1 495857 R 273119 CDS NP_078272.1 13357998 876209 496464..497627 1 NC_002162.1 ferrichrome transport ATP-binding protein 497627 fhuC 876209 fhuC Ureaplasma parvum serovar 3 str. ATCC 700970 ferrichrome transport ATP-binding protein NP_078272.1 496464 D 273119 CDS NP_078273.1 13357999 876366 497710..498453 1 NC_002162.1 hemolysin 498453 hlyA 876366 hlyA Ureaplasma parvum serovar 3 str. ATCC 700970 hemolysin NP_078273.1 497710 D 273119 CDS NP_078274.1 13358000 876365 498470..499525 1 NC_002162.1 hypothetical protein 499525 876365 UU437 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078274.1 498470 D 273119 CDS NP_078275.1 13358001 876364 complement(499537..499866) 1 NC_002162.1 holliday junction DNA helicase (fragment) 499866 ruvB-1 876364 ruvB-1 Ureaplasma parvum serovar 3 str. ATCC 700970 holliday junction DNA helicase (fragment) NP_078275.1 499537 R 273119 CDS NP_078276.1 13358002 876363 499980..500231 1 NC_002162.1 hypothetical protein 500231 876363 UU439 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078276.1 499980 D 273119 CDS NP_078277.1 13358003 876362 complement(500313..501812) 1 NC_002162.1 membrane lipoprotein 501812 876362 UU440 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078277.1 500313 R 273119 CDS NP_078278.1 13358004 876361 complement(501760..503112) 1 NC_002162.1 hypothetical protein 503112 876361 UU441 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078278.1 501760 R 273119 CDS NP_078279.1 13358005 876360 complement(503066..504316) 1 NC_002162.1 hypothetical protein 504316 876360 UU442 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078279.1 503066 R 273119 CDS NP_078280.1 13358006 876359 complement(504656..506542) 1 NC_002162.1 membrane lipoprotein 506542 876359 UU443 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078280.1 504656 R 273119 CDS NP_078281.1 13358007 876358 complement(506698..506874) 1 NC_002162.1 hypothetical protein 506874 876358 UU444 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078281.1 506698 R 273119 CDS NP_078282.1 13358008 876357 complement(507066..507491) 1 NC_002162.1 hypothetical protein 507491 876357 UU445 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078282.1 507066 R 273119 CDS NP_078283.1 13358009 876356 507775..508224 1 NC_002162.1 type I restriction enzyme S protein (fragment) 508224 hsdS-4 876356 hsdS-4 Ureaplasma parvum serovar 3 str. ATCC 700970 type I restriction enzyme S protein (fragment) NP_078283.1 507775 D 273119 CDS NP_078284.1 13358010 876355 508300..508674 1 NC_002162.1 type I restriction enzyme S protein (fragment) 508674 hsdS-5 876355 hsdS-5 Ureaplasma parvum serovar 3 str. ATCC 700970 type I restriction enzyme S protein (fragment) NP_078284.1 508300 D 273119 CDS NP_078285.1 13358011 876354 complement(508750..509688) 1 NC_002162.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 509688 ruvB 876354 ruvB Ureaplasma parvum serovar 3 str. ATCC 700970 Holliday junction DNA helicase RuvB NP_078285.1 508750 R 273119 CDS NP_078286.1 13358012 876353 complement(509678..510265) 1 NC_002162.1 holliday-junction binding protein 510265 ruvA 876353 ruvA Ureaplasma parvum serovar 3 str. ATCC 700970 holliday-junction binding protein NP_078286.1 509678 R 273119 CDS NP_078287.1 13358013 876352 complement(510307..511470) 1 NC_002162.1 hypothetical protein 511470 876352 UU450 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078287.1 510307 R 273119 CDS NP_078288.1 13358014 876351 complement(511550..512566) 1 NC_002162.1 hypothetical protein 512566 876351 UU451 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078288.1 511550 R 273119 CDS NP_078289.1 13358015 876350 complement(512663..514081) 1 NC_002162.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 514081 proS 876350 proS Ureaplasma parvum serovar 3 str. ATCC 700970 prolyl-tRNA synthetase NP_078289.1 512663 R 273119 CDS NP_078290.1 13358016 876349 complement(514107..514574) 1 NC_002162.1 hypothetical protein 514574 876349 UU453 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078290.1 514107 R 273119 CDS NP_078291.1 13358017 876348 complement(514561..515769) 1 NC_002162.1 nitrogen fixation protein - class-V pyridoxal-phosphate aminotransferase 515769 nifS 876348 nifS Ureaplasma parvum serovar 3 str. ATCC 700970 nitrogen fixation protein - class-V pyridoxal-phosphate aminotransferase NP_078291.1 514561 R 273119 CDS NP_078292.1 13358018 876347 515969..519367 1 NC_002162.1 hypothetical protein 519367 876347 UU455 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078292.1 515969 D 273119 CDS NP_078293.1 13358019 876346 519367..520026 1 NC_002162.1 d-ribulose-5-phosphate 3 epimerase 520026 rpe 876346 rpe Ureaplasma parvum serovar 3 str. ATCC 700970 d-ribulose-5-phosphate 3 epimerase NP_078293.1 519367 D 273119 CDS NP_078294.1 13358020 876345 complement(520153..522471) 1 NC_002162.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 522471 pheT 876345 pheT Ureaplasma parvum serovar 3 str. ATCC 700970 phenylalanyl-tRNA synthetase subunit beta NP_078294.1 520153 R 273119 CDS NP_078295.1 13358021 876344 complement(522503..523504) 1 NC_002162.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 523504 pheS 876344 pheS Ureaplasma parvum serovar 3 str. ATCC 700970 phenylalanyl-tRNA synthetase subunit alpha NP_078295.1 522503 R 273119 CDS NP_078296.1 13358022 876343 complement(523511..523981) 1 NC_002162.1 hypothetical protein 523981 876343 UU459 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078296.1 523511 R 273119 CDS NP_078297.1 13358023 876342 complement(523974..524741) 1 NC_002162.1 NH(3)-dependent NAD(+) synthetase 524741 nadE 876342 nadE Ureaplasma parvum serovar 3 str. ATCC 700970 NH(3)-dependent NAD(+) synthetase NP_078297.1 523974 R 273119 CDS NP_078298.1 13358024 876341 complement(524749..526056) 1 NC_002162.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 526056 obgE 876341 obgE Ureaplasma parvum serovar 3 str. ATCC 700970 GTPase ObgE NP_078298.1 524749 R 273119 CDS NP_078299.1 13358025 876340 complement(526059..526877) 1 NC_002162.1 hypothetical protein 526877 876340 UU462 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078299.1 526059 R 273119 CDS NP_078300.1 13358026 876339 complement(526944..527861) 1 NC_002162.1 methionyl-tRNA formyltransferase 527861 fmt 876339 fmt Ureaplasma parvum serovar 3 str. ATCC 700970 methionyl-tRNA formyltransferase NP_078300.1 526944 R 273119 CDS NP_078301.1 13358027 876338 complement(527935..528660) 1 NC_002162.1 hypothetical protein 528660 876338 UU464 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078301.1 527935 R 273119 CDS NP_078302.1 13358028 876337 528910..529506 1 NC_002162.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 529506 def 876337 def Ureaplasma parvum serovar 3 str. ATCC 700970 peptide deformylase NP_078302.1 528910 D 273119 CDS NP_078303.1 13358029 876336 529513..531441 1 NC_002162.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 531441 parE/gyrB 876336 parE/gyrB Ureaplasma parvum serovar 3 str. ATCC 700970 DNA topoisomerase IV subunit B NP_078303.1 529513 D 273119 CDS NP_078304.1 13358030 876335 531447..533999 1 NC_002162.1 topoisomerase IV subunit A 533999 parC/gyrA 876335 parC/gyrA Ureaplasma parvum serovar 3 str. ATCC 700970 topoisomerase IV subunit A NP_078304.1 531447 D 273119 CDS NP_078305.1 13358031 876334 533999..535084 1 NC_002162.1 ATP/GTP-binding protein 535084 876334 UU468 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_078305.1 533999 D 273119 CDS NP_078306.1 13358032 876333 535111..536289 1 NC_002162.1 catalyzes the reversible adenylation of nicotinate mononucleotide to nicotinic acid adenine dinucleotide; putative nicotinate-nucleotide adenylyltransferase 536289 nadD 876333 nadD Ureaplasma parvum serovar 3 str. ATCC 700970 putative nicotinate-nucleotide adenylyltransferase NP_078306.1 535111 D 273119 CDS NP_078307.1 13358033 876332 536299..536655 1 NC_002162.1 purine nucleoside phosphorylase 536655 pfs 876332 pfs Ureaplasma parvum serovar 3 str. ATCC 700970 purine nucleoside phosphorylase NP_078307.1 536299 D 273119 CDS NP_078308.1 13358034 876331 536799..536990 1 NC_002162.1 hypothetical protein 536990 876331 UU471 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078308.1 536799 D 273119 CDS NP_078309.1 13358035 876330 537097..537348 1 NC_002162.1 hypothetical protein 537348 876330 UU472 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078309.1 537097 D 273119 CDS NP_078310.1 13358036 876329 537638..539965 1 NC_002162.1 hypothetical protein 539965 876329 UU473 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078310.1 537638 D 273119 CDS NP_078311.1 13358037 876328 540008..543949 1 NC_002162.1 hypothetical protein 543949 876328 UU474 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078311.1 540008 D 273119 CDS NP_078312.1 13358038 876327 complement(544036..545886) 1 NC_002162.1 hypothetical protein 545886 876327 UU475 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078312.1 544036 R 273119 CDS NP_078313.1 13358039 876326 complement(546042..548519) 1 NC_002162.1 ATP/GTP-binding protein 548519 876326 UU476 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_078313.1 546042 R 273119 CDS NP_078314.1 13358040 876325 complement(548525..549607) 1 NC_002162.1 adenine specific DNA methyltransferase 549607 mod 876325 mod Ureaplasma parvum serovar 3 str. ATCC 700970 adenine specific DNA methyltransferase NP_078314.1 548525 R 273119 CDS NP_078315.1 13358041 876324 complement(549762..550112) 1 NC_002162.1 hypothetical protein 550112 876324 UU478 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078315.1 549762 R 273119 CDS NP_078316.1 13358042 876323 complement(550266..553343) 1 NC_002162.1 hypothetical protein 553343 876323 UU479 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078316.1 550266 R 273119 CDS NP_078317.1 13358043 876322 553654..555273 1 NC_002162.1 ATP/GTP-binding protein 555273 876322 UU480 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_078317.1 553654 D 273119 CDS NP_078318.1 13358044 876321 complement(555605..558271) 1 NC_002162.1 hypothetical protein 558271 876321 UU481 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078318.1 555605 R 273119 CDS NP_078319.1 13358045 876320 complement(558804..572870) 1 NC_002162.1 hypothetical protein 572870 876320 UU482 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078319.1 558804 R 273119 CDS NP_078320.1 13358046 876319 complement(573097..576408) 1 NC_002162.1 MBA N-terminal paralog 576408 876319 UU483 Ureaplasma parvum serovar 3 str. ATCC 700970 MBA N-terminal paralog NP_078320.1 573097 R 273119 CDS NP_078321.1 13358047 876318 576679..577842 1 NC_002162.1 acetate kinase 577842 ackA 876318 ackA Ureaplasma parvum serovar 3 str. ATCC 700970 acetate kinase NP_078321.1 576679 D 273119 CDS NP_078322.1 13358048 876317 complement(577846..579963) 1 NC_002162.1 membrane lipoprotein 579963 876317 UU485 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078322.1 577846 R 273119 CDS NP_078323.1 13358049 876316 complement(580148..581452) 1 NC_002162.1 hypothetical protein 581452 mnuA-2 876316 mnuA-2 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078323.1 580148 R 273119 CDS NP_078324.1 13358050 876315 complement(581604..584345) 1 NC_002162.1 MBA N-terminal paralog 584345 876315 UU487 Ureaplasma parvum serovar 3 str. ATCC 700970 MBA N-terminal paralog NP_078324.1 581604 R 273119 CDS NP_078325.1 13358051 876314 complement(584559..585080) 1 NC_002162.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 585080 apt 876314 apt Ureaplasma parvum serovar 3 str. ATCC 700970 adenine phosphoribosyltransferase NP_078325.1 584559 R 273119 CDS NP_078326.1 13358052 876313 complement(585101..588112) 1 NC_002162.1 membrane lipoprotein 588112 876313 UU489 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078326.1 585101 R 273119 CDS NP_078327.1 13358053 876312 588434..588901 1 NC_002162.1 hypothetical protein 588901 876312 UU490 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078327.1 588434 D 273119 CDS NP_078328.1 13358054 876311 588882..589796 1 NC_002162.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 589796 era 876311 era Ureaplasma parvum serovar 3 str. ATCC 700970 GTP-binding protein Era NP_078328.1 588882 D 273119 CDS NP_078329.1 13358055 876310 589796..590512 1 NC_002162.1 hypothetical protein 590512 876310 UU492 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078329.1 589796 D 273119 CDS NP_078330.1 13358056 876309 590546..591967 1 NC_002162.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 591967 glyS 876309 glyS Ureaplasma parvum serovar 3 str. ATCC 700970 glycyl-tRNA synthetase NP_078330.1 590546 D 273119 CDS NP_078331.1 13358057 876308 591955..593880 1 NC_002162.1 DNA primase 593880 dnaG 876308 dnaG Ureaplasma parvum serovar 3 str. ATCC 700970 DNA primase NP_078331.1 591955 D 273119 CDS NP_078332.1 13358058 876307 complement(593959..608976) 1 NC_002162.1 membrane lipoprotein 608976 876307 UU495 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078332.1 593959 R 273119 CDS NP_078333.1 13358059 876306 complement(608954..611371) 1 NC_002162.1 hypothetical protein 611371 876306 UU496 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078333.1 608954 R 273119 CDS NP_078334.1 13358060 876305 611599..612732 1 NC_002162.1 hypothetical protein 612732 876305 UU497 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078334.1 611599 D 273119 CDS NP_078335.1 13358061 876304 complement(612832..613440) 1 NC_002162.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 613440 rpsD 876304 rpsD Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S4 NP_078335.1 612832 R 273119 CDS NP_078336.1 13358062 876303 613706..615397 1 NC_002162.1 hypothetical protein 615397 876303 UU499 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078336.1 613706 D 273119 CDS NP_078337.1 13358063 876293 complement(616455..617246) 1 NC_002162.1 hypothetical protein 617246 876293 UU500 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078337.1 616455 R 273119 CDS NP_078338.1 13358064 876292 complement(617250..619481) 1 NC_002162.1 DNA helicase II 619481 uvrD 876292 uvrD Ureaplasma parvum serovar 3 str. ATCC 700970 DNA helicase II NP_078338.1 617250 R 273119 CDS NP_078339.1 13358065 876291 complement(619506..620327) 1 NC_002162.1 membrane lipoprotein 620327 876291 UU502 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078339.1 619506 R 273119 CDS NP_078340.1 13358066 876290 complement(620328..621266) 1 NC_002162.1 glycosyltransferase 621266 epsG 876290 epsG Ureaplasma parvum serovar 3 str. ATCC 700970 glycosyltransferase NP_078340.1 620328 R 273119 CDS NP_078341.1 13358067 876287 621853..623016 1 NC_002162.1 hypothetical protein 623016 876287 UU504 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078341.1 621853 D 273119 CDS NP_078342.1 13358068 876286 622988..623848 1 NC_002162.1 hypothetical protein 623848 876286 UU505 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078342.1 622988 D 273119 CDS NP_078343.1 13358069 876285 623865..624098 1 NC_002162.1 acyl carrier protein 624098 acpP 876285 acpP Ureaplasma parvum serovar 3 str. ATCC 700970 acyl carrier protein NP_078343.1 623865 D 273119 CDS NP_078344.1 13358070 876283 complement(625203..626570) 1 NC_002162.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 626570 ampL 876283 ampL Ureaplasma parvum serovar 3 str. ATCC 700970 leucyl aminopeptidase NP_078344.1 625203 R 273119 CDS NP_078345.1 13358071 876282 complement(626683..628986) 1 NC_002162.1 cell division protein 628986 ftsK 876282 ftsK Ureaplasma parvum serovar 3 str. ATCC 700970 cell division protein NP_078345.1 626683 R 273119 CDS NP_078346.1 13358072 876281 complement(629003..630673) 1 NC_002162.1 ATP/GTP-binding protein 630673 876281 UU509 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_078346.1 629003 R 273119 CDS NP_078347.1 13358073 875986 630813..632789 1 NC_002162.1 ABC transporter 632789 ABC-2 875986 ABC-2 Ureaplasma parvum serovar 3 str. ATCC 700970 ABC transporter NP_078347.1 630813 D 273119 CDS NP_078348.1 13358074 875985 632764..633129 1 NC_002162.1 hypothetical protein 633129 875985 UU510.1 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078348.1 632764 D 273119 CDS NP_078349.1 13358075 875984 complement(633118..634254) 1 NC_002162.1 CDP-diglyceride synthetase 634254 cdsA 875984 cdsA Ureaplasma parvum serovar 3 str. ATCC 700970 CDP-diglyceride synthetase NP_078349.1 633118 R 273119 CDS NP_078350.1 13358076 875983 complement(634265..634816) 1 NC_002162.1 ribosome releasing factor 634816 frr 875983 frr Ureaplasma parvum serovar 3 str. ATCC 700970 ribosome releasing factor NP_078350.1 634265 R 273119 CDS NP_078351.1 13358077 875982 complement(634834..635541) 1 NC_002162.1 uridylate kinase 635541 pyrH 875982 pyrH Ureaplasma parvum serovar 3 str. ATCC 700970 uridylate kinase NP_078351.1 634834 R 273119 CDS NP_078352.1 13358078 875981 complement(635625..636500) 1 NC_002162.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 636500 tsf 875981 tsf Ureaplasma parvum serovar 3 str. ATCC 700970 elongation factor Ts NP_078352.1 635625 R 273119 CDS NP_078353.1 13358079 876130 637428..638483 1 NC_002162.1 ferrichrome ABC transporter 638483 ABC-3 876130 ABC-3 Ureaplasma parvum serovar 3 str. ATCC 700970 ferrichrome ABC transporter NP_078353.1 637428 D 273119 CDS NP_078354.1 13358080 876129 638485..639510 1 NC_002162.1 ferric anguibactin transport system permerase protein 639510 fatC-3 876129 fatC-3 Ureaplasma parvum serovar 3 str. ATCC 700970 ferric anguibactin transport system permerase protein NP_078354.1 638485 D 273119 CDS NP_078355.1 13358081 876128 639550..641160 1 NC_002162.1 putative ABC substrate-binding protein - iron 641160 ABCsbp-8 876128 ABCsbp-8 Ureaplasma parvum serovar 3 str. ATCC 700970 putative ABC substrate-binding protein - iron NP_078355.1 639550 D 273119 CDS NP_078356.1 13358082 876127 641232..641450 1 NC_002162.1 hypothetical protein 641450 876127 UU518 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078356.1 641232 D 273119 CDS NP_078357.1 13358083 876126 complement(641564..643357) 1 NC_002162.1 hypothetical protein 643357 876126 UU519 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078357.1 641564 R 273119 CDS NP_078358.1 13358084 876125 complement(643446..645281) 1 NC_002162.1 hypothetical protein 645281 876125 UU520 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078358.1 643446 R 273119 CDS NP_078359.1 13358085 876124 complement(645311..647146) 1 NC_002162.1 oligoendopeptidase F - zinc metalloprotease 647146 pepF-2 876124 pepF-2 Ureaplasma parvum serovar 3 str. ATCC 700970 oligoendopeptidase F - zinc metalloprotease NP_078359.1 645311 R 273119 CDS NP_078360.1 13358086 876123 complement(647241..648425) 1 NC_002162.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 648425 tuf 876123 tuf Ureaplasma parvum serovar 3 str. ATCC 700970 elongation factor Tu NP_078360.1 647241 R 273119 CDS NP_078361.1 13358087 876076 complement(648562..650628) 1 NC_002162.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 650628 fusA 876076 fusA Ureaplasma parvum serovar 3 str. ATCC 700970 elongation factor G NP_078361.1 648562 R 273119 CDS NP_078362.1 13358088 876075 complement(650655..651122) 1 NC_002162.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 651122 rpS7 876075 rpS7 Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S7 NP_078362.1 650655 R 273119 CDS NP_078363.1 13358089 876074 complement(651150..651575) 1 NC_002162.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 651575 rpsL 876074 rpsL Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S12 NP_078363.1 651150 R 273119 CDS NP_078364.1 13358090 876073 complement(651761..653272) 1 NC_002162.1 MBA N-terminal paralog 653272 876073 UU526 Ureaplasma parvum serovar 3 str. ATCC 700970 MBA N-terminal paralog NP_078364.1 651761 R 273119 CDS NP_078365.1 13358091 876072 complement(653483..656398) 1 NC_002162.1 hypothetical protein 656398 876072 UU527 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078365.1 653483 R 273119 CDS NP_078366.1 13358092 876071 complement(656402..657301) 1 NC_002162.1 cytosine-specific methyltransferase 657301 dcm 876071 dcm Ureaplasma parvum serovar 3 str. ATCC 700970 cytosine-specific methyltransferase NP_078366.1 656402 R 273119 CDS NP_078367.1 13358093 876109 657864..658619 1 NC_002162.1 integrase-recombinase protein 658619 codV 876109 codV Ureaplasma parvum serovar 3 str. ATCC 700970 integrase-recombinase protein NP_078367.1 657864 D 273119 CDS NP_078368.1 13358094 876108 complement(658749..660407) 1 NC_002162.1 phosphomannomutase 660407 cpsG 876108 cpsG Ureaplasma parvum serovar 3 str. ATCC 700970 phosphomannomutase NP_078368.1 658749 R 273119 CDS NP_078369.1 13358095 876107 complement(660442..660837) 1 NC_002162.1 cytidine deaminase 660837 cdd 876107 cdd Ureaplasma parvum serovar 3 str. ATCC 700970 cytidine deaminase NP_078369.1 660442 R 273119 CDS NP_078370.1 13358096 876105 complement(661048..662121) 1 NC_002162.1 XAA-Pro aminopeptidase 662121 pepP 876105 pepP Ureaplasma parvum serovar 3 str. ATCC 700970 XAA-Pro aminopeptidase NP_078370.1 661048 R 273119 CDS NP_078371.1 13358097 876104 complement(662132..662293) 1 NC_002162.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 662293 rpmG 876104 rpmG Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L33 NP_078371.1 662132 R 273119 CDS NP_078372.1 13358098 876103 complement(662354..664096) 1 NC_002162.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 664096 thrS 876103 thrS Ureaplasma parvum serovar 3 str. ATCC 700970 threonyl-tRNA synthetase NP_078372.1 662354 R 273119 CDS NP_078373.1 13358099 876102 664249..665145 1 NC_002162.1 hypothetical protein 665145 876102 UU535 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078373.1 664249 D 273119 CDS NP_078374.1 13358100 876101 complement(665142..665867) 1 NC_002162.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 665867 truA 876101 truA Ureaplasma parvum serovar 3 str. ATCC 700970 tRNA pseudouridine synthase A NP_078374.1 665142 R 273119 CDS NP_078375.1 13358101 876100 complement(665929..667245) 1 NC_002162.1 hypothetical protein 667245 876100 UU537 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078375.1 665929 R 273119 CDS NP_078376.1 13358102 876099 complement(667246..668547) 1 NC_002162.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 668547 cbiO 876099 cbiO Ureaplasma parvum serovar 3 str. ATCC 700970 cobalt transporter ATP-binding subunit NP_078376.1 667246 R 273119 CDS NP_078377.1 13358103 876062 complement(668535..669419) 1 NC_002162.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 669419 cbiO 876062 cbiO Ureaplasma parvum serovar 3 str. ATCC 700970 cobalt transporter ATP-binding subunit NP_078377.1 668535 R 273119 CDS NP_078378.1 13358104 876061 complement(669559..670248) 1 NC_002162.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 670248 rplA 876061 rplA Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L1 NP_078378.1 669559 R 273119 CDS NP_078379.1 13358105 876060 complement(670251..670703) 1 NC_002162.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 670703 rplK 876060 rplK Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L11 NP_078379.1 670251 R 273119 CDS NP_078380.1 13358106 876059 670982..673408 1 NC_002162.1 hypothetical protein 673408 876059 UU542 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078380.1 670982 D 273119 CDS NP_078381.1 13358107 876058 673532..677773 1 NC_002162.1 hypothetical protein 677773 876058 UU543 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078381.1 673532 D 273119 CDS NP_078382.1 13358108 876057 complement(677822..679255) 1 NC_002162.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 679255 gatB 876057 gatB Ureaplasma parvum serovar 3 str. ATCC 700970 aspartyl/glutamyl-tRNA amidotransferase subunit B NP_078382.1 677822 R 273119 CDS NP_078383.1 13358109 876056 complement(679258..680691) 1 NC_002162.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 680691 gatA 876056 gatA Ureaplasma parvum serovar 3 str. ATCC 700970 aspartyl/glutamyl-tRNA amidotransferase subunit A NP_078383.1 679258 R 273119 CDS NP_078384.1 13358110 876097 complement(680681..680965) 1 NC_002162.1 hypothetical protein 680965 876097 UU546 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078384.1 680681 R 273119 CDS NP_078385.1 13358111 876096 complement(680986..682002) 1 NC_002162.1 in some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; hypothetical protein 682002 876096 UU547 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078385.1 680986 R 273119 CDS NP_078386.1 13358112 876095 complement(682041..682679) 1 NC_002162.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 682679 ung 876095 ung Ureaplasma parvum serovar 3 str. ATCC 700970 uracil-DNA glycosylase NP_078386.1 682041 R 273119 CDS NP_078387.1 13358113 876094 complement(682658..684424) 1 NC_002162.1 membrane lipoprotein 684424 876094 UU549 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078387.1 682658 R 273119 CDS NP_078388.1 13358114 876093 complement(684427..685887) 1 NC_002162.1 replicative DNA helicase 685887 dnaB 876093 dnaB Ureaplasma parvum serovar 3 str. ATCC 700970 replicative DNA helicase NP_078388.1 684427 R 273119 CDS NP_078389.1 13358115 876092 complement(685893..686330) 1 NC_002162.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 686330 rplI 876092 rplI Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L9 NP_078389.1 685893 R 273119 CDS NP_078390.1 13358116 876040 complement(686414..686653) 1 NC_002162.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 686653 rpsR 876040 rpsR Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S18 NP_078390.1 686414 R 273119 CDS NP_078391.1 13358117 876039 complement(686662..687162) 1 NC_002162.1 single-strand binding protein 687162 ssb 876039 ssb Ureaplasma parvum serovar 3 str. ATCC 700970 single-strand binding protein NP_078391.1 686662 R 273119 CDS NP_078392.1 13358118 876038 complement(687207..687689) 1 NC_002162.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 687689 rpsF 876038 rpsF Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S6 NP_078392.1 687207 R 273119 CDS NP_078393.1 13358119 876037 687858..688367 1 NC_002162.1 hypothetical protein 688367 876037 UU555 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078393.1 687858 D 273119 CDS NP_078394.1 13358120 876069 complement(689213..689701) 1 NC_002162.1 hypothetical protein 689701 876069 UU556 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078394.1 689213 R 273119 CDS NP_078395.1 13358121 876068 complement(689710..693105) 1 NC_002162.1 membrane lipoprotein 693105 876068 UU557 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078395.1 689710 R 273119 CDS NP_078396.1 13358122 876067 complement(693124..698775) 1 NC_002162.1 hypothetical protein 698775 876067 UU558 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078396.1 693124 R 273119 CDS NP_078397.1 13358123 876066 complement(698794..700113) 1 NC_002162.1 oligopeptide transport system permease protein 700113 oppF 876066 oppF Ureaplasma parvum serovar 3 str. ATCC 700970 oligopeptide transport system permease protein NP_078397.1 698794 R 273119 CDS NP_078398.1 13358124 876065 complement(700134..701654) 1 NC_002162.1 oligopeptide transport system permease protein 701654 oppD 876065 oppD Ureaplasma parvum serovar 3 str. ATCC 700970 oligopeptide transport system permease protein NP_078398.1 700134 R 273119 CDS NP_078399.1 13358125 876064 complement(701658..702656) 1 NC_002162.1 oligopeptide transport system permease protein 702656 oppC 876064 oppC Ureaplasma parvum serovar 3 str. ATCC 700970 oligopeptide transport system permease protein NP_078399.1 701658 R 273119 CDS NP_078400.1 13358126 876063 complement(702661..703794) 1 NC_002162.1 oligopeptide transport system permease protein 703794 oppB 876063 oppB Ureaplasma parvum serovar 3 str. ATCC 700970 oligopeptide transport system permease protein NP_078400.1 702661 R 273119 CDS NP_078401.1 13358127 876098 complement(703809..704249) 1 NC_002162.1 hypothetical protein 704249 876098 UU563 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078401.1 703809 R 273119 CDS NP_078402.1 13358128 876052 complement(704284..705477) 1 NC_002162.1 membrane lipoprotein 705477 876052 UU564 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078402.1 704284 R 273119 CDS NP_078403.1 13358129 876051 705450..705710 1 NC_002162.1 hypothetical protein 705710 876051 UU564.1 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078403.1 705450 D 273119 CDS NP_078404.1 13358130 876050 complement(705907..707391) 1 NC_002162.1 hypothetical protein 707391 876050 UU565 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078404.1 705907 R 273119 CDS NP_078405.1 13358131 876049 complement(707526..707897) 1 NC_002162.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 707897 rplS 876049 rplS Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L19 NP_078405.1 707526 R 273119 CDS NP_078406.1 13358132 876048 complement(707907..708593) 1 NC_002162.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 708593 trmD 876048 trmD Ureaplasma parvum serovar 3 str. ATCC 700970 tRNA (guanine-N(1)-)-methyltransferase NP_078406.1 707907 R 273119 CDS NP_078407.1 13358133 876047 complement(708606..708911) 1 NC_002162.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 708911 rpsP 876047 rpsP Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S16 NP_078407.1 708606 R 273119 CDS NP_078408.1 13358134 876046 complement(708998..709831) 1 NC_002162.1 hypothetical protein 709831 876046 UU569 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078408.1 708998 R 273119 CDS NP_078409.1 13358135 876085 complement(709862..711652) 1 NC_002162.1 hypothetical protein 711652 876085 UU570 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078409.1 709862 R 273119 CDS NP_078410.1 13358136 876084 complement(711892..715995) 1 NC_002162.1 ATP/GTP-binding protein 715995 876084 UU571 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_078410.1 711892 R 273119 CDS NP_078411.1 13358137 876083 716191..717927 1 NC_002162.1 hypothetical protein 717927 876083 UU572 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078411.1 716191 D 273119 CDS NP_078412.1 13358138 876082 717992..719278 1 NC_002162.1 potassium channel protein 719278 kch 876082 kch Ureaplasma parvum serovar 3 str. ATCC 700970 potassium channel protein NP_078412.1 717992 D 273119 CDS NP_078413.1 13358139 876081 complement(719316..720233) 1 NC_002162.1 hypothetical protein 720233 876081 UU574 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078413.1 719316 R 273119 CDS NP_078414.1 13358140 876080 complement(720239..721192) 1 NC_002162.1 hypothetical protein 721192 876080 UU575 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078414.1 720239 R 273119 CDS NP_078415.1 13358141 876079 complement(721262..721663) 1 NC_002162.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 721663 rpsI 876079 rpsI Ureaplasma parvum serovar 3 str. ATCC 700970 30S ribosomal protein S9 NP_078415.1 721262 R 273119 CDS NP_078416.1 13358142 876078 complement(721683..722129) 1 NC_002162.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 722129 rplM 876078 rplM Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L13 NP_078416.1 721683 R 273119 CDS NP_078417.1 13358143 876077 722443..724023 1 NC_002162.1 membrane lipoprotein 724023 876077 UU578 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078417.1 722443 D 273119 CDS NP_078418.1 13358144 876115 724218..725831 1 NC_002162.1 membrane lipoprotein 725831 876115 UU579 Ureaplasma parvum serovar 3 str. ATCC 700970 membrane lipoprotein NP_078418.1 724218 D 273119 CDS NP_570895.1 18656942 876054 725878..726024 1 NC_002162.1 ribosomal protein L33 726024 rpmG 876054 rpmG Ureaplasma parvum serovar 3 str. ATCC 700970 ribosomal protein L33 NP_570895.1 725878 D 273119 CDS NP_078419.1 13358145 876114 726028..726528 1 NC_002162.1 hypothetical protein 726528 876114 UU580 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078419.1 726028 D 273119 CDS NP_078420.1 13358146 876113 726554..727330 1 NC_002162.1 transcription antitermination factor 727330 nusG 876113 nusG Ureaplasma parvum serovar 3 str. ATCC 700970 transcription antitermination factor NP_078420.1 726554 D 273119 CDS NP_078421.1 13358147 876112 complement(727817..729148) 1 NC_002162.1 ATP-dependent RNA helicase 729148 deaD 876112 deaD Ureaplasma parvum serovar 3 str. ATCC 700970 ATP-dependent RNA helicase NP_078421.1 727817 R 273119 CDS NP_078422.1 13358148 876111 complement(729149..730753) 1 NC_002162.1 MATE transporter family DNA damage inducible protein 730753 dinF-1 876111 dinF-1 Ureaplasma parvum serovar 3 str. ATCC 700970 MATE transporter family DNA damage inducible protein NP_078422.1 729149 R 273119 CDS NP_078423.1 13358149 876110 complement(731227..732789) 1 NC_002162.1 MATE transporter family DNA damage inducible protein 732789 dinF-2 876110 dinF-2 Ureaplasma parvum serovar 3 str. ATCC 700970 MATE transporter family DNA damage inducible protein NP_078423.1 731227 R 273119 CDS NP_078424.1 13358150 876045 complement(732938..733585) 1 NC_002162.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 733585 deoC 876045 deoC Ureaplasma parvum serovar 3 str. ATCC 700970 deoxyribose-phosphate aldolase NP_078424.1 732938 R 273119 CDS NP_078425.1 13358151 876044 complement(733597..735558) 1 NC_002162.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 735558 tktA 876044 tktA Ureaplasma parvum serovar 3 str. ATCC 700970 transketolase NP_078425.1 733597 R 273119 CDS NP_078426.1 13358152 876043 complement(735588..735851) 1 NC_002162.1 phosphohistidinoprotein-hexose phosphotransferase 735851 ptsH 876043 ptsH Ureaplasma parvum serovar 3 str. ATCC 700970 phosphohistidinoprotein-hexose phosphotransferase NP_078426.1 735588 R 273119 CDS NP_078427.1 13358153 876042 complement(735951..737549) 1 NC_002162.1 cardiolipin synthase 737549 cls 876042 cls Ureaplasma parvum serovar 3 str. ATCC 700970 cardiolipin synthase NP_078427.1 735951 R 273119 CDS NP_078428.1 13358154 876014 complement(737806..738126) 1 NC_002162.1 thioredoxin 738126 trx 876014 trx Ureaplasma parvum serovar 3 str. ATCC 700970 thioredoxin NP_078428.1 737806 R 273119 CDS NP_078429.1 13358155 876013 complement(738155..740188) 1 NC_002162.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 740188 topA 876013 topA Ureaplasma parvum serovar 3 str. ATCC 700970 DNA topoisomerase I NP_078429.1 738155 R 273119 CDS NP_078430.1 13358156 876012 complement(740263..740982) 1 NC_002162.1 hypothetical protein 740982 876012 UU591 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078430.1 740263 R 273119 CDS NP_078431.1 13358157 876011 complement(741024..741845) 1 NC_002162.1 ATP/GTP-binding protein 741845 876011 UU592 Ureaplasma parvum serovar 3 str. ATCC 700970 ATP/GTP-binding protein NP_078431.1 741024 R 273119 CDS NP_078432.1 13358158 876010 complement(741857..742297) 1 NC_002162.1 hypothetical protein 742297 876010 UU593 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078432.1 741857 R 273119 CDS NP_078433.1 13358159 876009 complement(742334..743005) 1 NC_002162.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 743005 tdk 876009 tdk Ureaplasma parvum serovar 3 str. ATCC 700970 thymidine kinase NP_078433.1 742334 R 273119 CDS NP_078434.1 13358160 876120 complement(743012..744118) 1 NC_002162.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 744118 gtp1 876120 gtp1 Ureaplasma parvum serovar 3 str. ATCC 700970 GTP-dependent nucleic acid-binding protein EngD NP_078434.1 743012 R 273119 CDS NP_078435.1 13358161 876119 complement(744129..745001) 1 NC_002162.1 fructose-bisphosphate aldolase 745001 tsr 876119 tsr Ureaplasma parvum serovar 3 str. ATCC 700970 fructose-bisphosphate aldolase NP_078435.1 744129 R 273119 CDS NP_078436.1 13358162 876118 complement(745006..745488) 1 NC_002162.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 745488 rpoE 876118 rpoE Ureaplasma parvum serovar 3 str. ATCC 700970 DNA-directed RNA polymerase subunit delta NP_078436.1 745006 R 273119 CDS NP_078437.1 13358163 876117 complement(745536..746753) 1 NC_002162.1 hypothetical protein 746753 876117 UU598 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078437.1 745536 R 273119 CDS NP_078438.1 13358164 876116 complement(746762..748210) 1 NC_002162.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 748210 gltX 876116 gltX Ureaplasma parvum serovar 3 str. ATCC 700970 glutamyl-tRNA synthetase NP_078438.1 746762 R 273119 CDS NP_078439.1 13358165 876027 complement(748200..748997) 1 NC_002162.1 hypothetical protein 748997 876027 UU600 Ureaplasma parvum serovar 3 str. ATCC 700970 hypothetical protein NP_078439.1 748200 R 273119 CDS NP_078440.1 13358166 876091 complement(749031..749804) 1 NC_002162.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 749804 ksgA 876091 ksgA Ureaplasma parvum serovar 3 str. ATCC 700970 dimethyladenosine transferase NP_078440.1 749031 R 273119 CDS NP_078441.1 13358167 876090 complement(749866..751017) 1 NC_002162.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 751017 876090 UU602 Ureaplasma parvum serovar 3 str. ATCC 700970 putative inner membrane protein translocase component YidC NP_078441.1 749866 R 273119 CDS NP_078442.1 13358168 876089 complement(751056..751397) 1 NC_002162.1 ribonuclease p - protein component 751397 rnpA 876089 rnpA Ureaplasma parvum serovar 3 str. ATCC 700970 ribonuclease p - protein component NP_078442.1 751056 R 273119 CDS NP_078443.1 13358169 876088 complement(751403..751549) 1 NC_002162.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 751549 rpmH 876088 rpmH Ureaplasma parvum serovar 3 str. ATCC 700970 50S ribosomal protein L34 NP_078443.1 751403 R 273119 CDS