-- dump date 20111121_015457 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002284414.1 209554480 6984355 17..1390 1 NC_011374.1 identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 1390 dnaA 6984355 dnaA Ureaplasma urealyticum serovar 10 str. ATCC 33699 chromosomal replication initiator protein DnaA YP_002284414.1 17 D 565575 CDS YP_002284415.1 209554444 6984161 1528..1815 1 NC_011374.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1815 rpmE 6984161 rpmE Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L31 YP_002284415.1 1528 D 565575 CDS YP_002284416.1 209554361 6984122 1957..3036 1 NC_011374.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3036 prfA 6984122 prfA Ureaplasma urealyticum serovar 10 str. ATCC 33699 peptide chain release factor 1 YP_002284416.1 1957 D 565575 CDS YP_002284417.1 209554022 6984039 3036..3908 1 NC_011374.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; methyltransferase, HemK family 3908 6984039 UUR10_0004 Ureaplasma urealyticum serovar 10 str. ATCC 33699 methyltransferase, HemK family YP_002284417.1 3036 D 565575 CDS YP_002284418.1 209554273 6983697 3895..4455 1 NC_011374.1 Sua5/YciO/YrdC/YwlC family protein 4455 6983697 UUR10_0005 Ureaplasma urealyticum serovar 10 str. ATCC 33699 Sua5/YciO/YrdC/YwlC family protein YP_002284418.1 3895 D 565575 CDS YP_002284419.1 209554550 6983950 4460..4921 1 NC_011374.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; sugar-phosphate isomerase, RpiB/LacA/LacB family 4921 6983950 UUR10_0006 Ureaplasma urealyticum serovar 10 str. ATCC 33699 sugar-phosphate isomerase, RpiB/LacA/LacB family YP_002284419.1 4460 D 565575 CDS YP_002284420.1 209554136 6984233 5046..5606 1 NC_011374.1 hypothetical protein 5606 6984233 UUR10_0007 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284420.1 5046 D 565575 CDS YP_002284421.1 209554442 6983811 5609..6085 1 NC_011374.1 hypothetical protein 6085 6983811 UUR10_0008 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284421.1 5609 D 565575 CDS YP_002284422.1 209554374 6984120 6232..7854 1 NC_011374.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 7854 mgtE 6984120 mgtE Ureaplasma urealyticum serovar 10 str. ATCC 33699 magnesium transporter YP_002284422.1 6232 D 565575 CDS YP_002284423.1 209554426 6984052 8011..8511 1 NC_011374.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 8511 rplJ 6984052 rplJ Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L10 YP_002284423.1 8011 D 565575 CDS YP_002284424.1 209554332 6984104 8536..8901 1 NC_011374.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 8901 rplL 6984104 rplL Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L7/L12 YP_002284424.1 8536 D 565575 CDS YP_002284425.1 209554258 6984009 complement(9125..10675) 1 NC_011374.1 identified by match to protein family HMM PF02608; hypothetical protein 10675 6984009 UUR10_0012 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284425.1 9125 R 565575 CDS YP_002284426.1 209554171 6983935 complement(11068..11997) 1 NC_011374.1 identified by match to protein family HMM PF02653; ribose/galactose ABC transporter 11997 6983935 UUR10_0013 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribose/galactose ABC transporter YP_002284426.1 11068 R 565575 CDS YP_002284427.1 209554013 6983846 complement(11997..14207) 1 NC_011374.1 identified by match to protein family HMM PF02653; ribose/galactose ABC transporter 14207 6983846 UUR10_0014 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribose/galactose ABC transporter YP_002284427.1 11997 R 565575 CDS YP_002284428.1 209554231 6983687 complement(14210..15817) 1 NC_011374.1 identified by match to protein family HMM PF00005; methylgalactoside permease ATP-binding protein 15817 6983687 UUR10_0015 Ureaplasma urealyticum serovar 10 str. ATCC 33699 methylgalactoside permease ATP-binding protein YP_002284428.1 14210 R 565575 CDS YP_002284429.1 209554530 6983908 complement(15873..17453) 1 NC_011374.1 identified by match to protein family HMM PF02608; hypothetical protein 17453 6983908 UUR10_0016 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284429.1 15873 R 565575 CDS YP_002284430.1 209554090 6984212 complement(17621..18418) 1 NC_011374.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; deoxyribonuclease, TatD family 18418 6984212 UUR10_0017 Ureaplasma urealyticum serovar 10 str. ATCC 33699 deoxyribonuclease, TatD family YP_002284430.1 17621 R 565575 CDS YP_002284431.1 209554346 6983765 complement(18420..19736) 1 NC_011374.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 19736 trmE 6983765 trmE Ureaplasma urealyticum serovar 10 str. ATCC 33699 tRNA modification GTPase TrmE YP_002284431.1 18420 R 565575 CDS YP_002284432.1 209554429 6984023 complement(19739..20533) 1 NC_011374.1 DNA polymerase III delta subunit 20533 6984023 UUR10_0019 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA polymerase III delta subunit YP_002284432.1 19739 R 565575 CDS YP_002284433.1 209554298 6984107 complement(20533..21222) 1 NC_011374.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 21222 tmk 6984107 tmk Ureaplasma urealyticum serovar 10 str. ATCC 33699 thymidylate kinase YP_002284433.1 20533 R 565575 CDS YP_002284434.1 209554221 6983975 complement(21206..22069) 1 NC_011374.1 identified by match to protein family HMM PF00561; triacylglycerol lipase 22069 6983975 UUR10_0021 Ureaplasma urealyticum serovar 10 str. ATCC 33699 triacylglycerol lipase YP_002284434.1 21206 R 565575 CDS YP_002284435.1 209554415 6983898 complement(22174..23196) 1 NC_011374.1 identified by match to protein family HMM PF01032; ferrichrome ABC transporter 23196 6983898 UUR10_0022 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ferrichrome ABC transporter YP_002284435.1 22174 R 565575 CDS YP_002284436.1 209554386 6984093 complement(23197..24138) 1 NC_011374.1 identified by match to protein family HMM PF01032; ferrichrome ABC transporter 24138 6984093 UUR10_0023 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ferrichrome ABC transporter YP_002284436.1 23197 R 565575 CDS YP_002284437.1 209554619 6984064 complement(24239..25639) 1 NC_011374.1 putative ABC substrate-binding protein - iron 25639 6984064 UUR10_0024 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative ABC substrate-binding protein - iron YP_002284437.1 24239 R 565575 CDS YP_002284438.1 209554091 6984302 complement(25694..26797) 1 NC_011374.1 identified by match to protein family HMM PF01032; ferrichrome ABC transporter 26797 6984302 UUR10_0025 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ferrichrome ABC transporter YP_002284438.1 25694 R 565575 CDS YP_002284439.1 209553993 6983766 complement(26969..28024) 1 NC_011374.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 28024 rpsB 6983766 rpsB Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S2 YP_002284439.1 26969 R 565575 CDS YP_002284440.1 209554311 6983668 complement(28122..29096) 1 NC_011374.1 putative ABC substrate-binding protein - iron 29096 6983668 UUR10_0027 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative ABC substrate-binding protein - iron YP_002284440.1 28122 R 565575 CDS YP_002284441.1 209554213 6983988 complement(29111..29857) 1 NC_011374.1 putative ABC substrate-binding protein - iron 29857 6983988 UUR10_0028 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative ABC substrate-binding protein - iron YP_002284441.1 29111 R 565575 CDS YP_002284442.1 209554449 6983889 complement(29863..31983) 1 NC_011374.1 identified by match to protein family HMM PF00575; match to protein family HMM PF09371; protein tex 31983 6983889 UUR10_0029 Ureaplasma urealyticum serovar 10 str. ATCC 33699 protein tex YP_002284442.1 29863 R 565575 CDS YP_002284443.1 209554354 6984127 32091..34334 1 NC_011374.1 putative lipoprotein 34334 6984127 UUR10_0030 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284443.1 32091 D 565575 CDS YP_002284444.1 209554473 6984032 35150..35623 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 35623 6984032 UUR10_0032 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284444.1 35150 D 565575 CDS YP_002284445.1 209554576 6984154 complement(35597..35839) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 35839 6984154 UUR10_0031 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284445.1 35597 R 565575 CDS YP_002284446.1 209554241 6984259 35970..36506 1 NC_011374.1 hypothetical protein 36506 6984259 UUR10_0033 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284446.1 35970 D 565575 CDS YP_002284447.1 209553995 6983918 complement(36559..37086) 1 NC_011374.1 hypothetical protein 37086 6983918 UUR10_0034 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284447.1 36559 R 565575 CDS YP_002284448.1 209554130 6983670 complement(37094..37567) 1 NC_011374.1 hypothetical protein 37567 6983670 UUR10_0035 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284448.1 37094 R 565575 CDS YP_002284449.1 209554541 6983805 complement(37709..39241) 1 NC_011374.1 identified by match to protein family HMM PF02384; type I restriction enzyme 39241 6983805 UUR10_0036 Ureaplasma urealyticum serovar 10 str. ATCC 33699 type I restriction enzyme YP_002284449.1 37709 R 565575 CDS YP_002284450.1 209554614 6984223 complement(39245..42313) 1 NC_011374.1 identified by match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I site-specific deoxyribonuclease, HsdR family 42313 6984223 UUR10_0037 Ureaplasma urealyticum serovar 10 str. ATCC 33699 type I site-specific deoxyribonuclease, HsdR family YP_002284450.1 39245 R 565575 CDS YP_002284451.1 209554402 6984297 complement(42544..42933) 1 NC_011374.1 identified by match to protein family HMM PF01420; reStriction-modification enzyme mpuuiii s subunit 42933 6984297 UUR10_0038 Ureaplasma urealyticum serovar 10 str. ATCC 33699 reStriction-modification enzyme mpuuiii s subunit YP_002284451.1 42544 R 565575 CDS YP_002284452.1 209554184 6984080 complement(42999..43640) 1 NC_011374.1 identified by match to protein family HMM PF01420; restriction modification enzyme subunit s2a 43640 6984080 UUR10_0039 Ureaplasma urealyticum serovar 10 str. ATCC 33699 restriction modification enzyme subunit s2a YP_002284452.1 42999 R 565575 CDS YP_002284453.1 209554488 6983859 complement(43791..44909) 1 NC_011374.1 identified by match to protein family HMM PF01420; restriction-modification enzyme subunit s3a 44909 6983859 UUR10_0040 Ureaplasma urealyticum serovar 10 str. ATCC 33699 restriction-modification enzyme subunit s3a YP_002284453.1 43791 R 565575 CDS YP_002284454.1 209554404 6984169 45017..46237 1 NC_011374.1 identified by match to protein family HMM PF01420; restriction-modification enzyme subunit s3b 46237 6984169 UUR10_0041 Ureaplasma urealyticum serovar 10 str. ATCC 33699 restriction-modification enzyme subunit s3b YP_002284454.1 45017 D 565575 CDS YP_002284455.1 209554319 6984082 46334..47722 1 NC_011374.1 identified by match to protein family HMM PF04326; match to protein family HMM PF08220; divergent AAA domain family 47722 6984082 UUR10_0042 Ureaplasma urealyticum serovar 10 str. ATCC 33699 divergent AAA domain family YP_002284455.1 46334 D 565575 CDS YP_002284456.1 209554149 6983996 47798..49642 1 NC_011374.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 49642 gidA 6983996 gidA Ureaplasma urealyticum serovar 10 str. ATCC 33699 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_002284456.1 47798 D 565575 CDS YP_002284457.1 209554410 6983824 49635..50345 1 NC_011374.1 identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; 16S rRNA methyltransferase GidB 50345 gidB 6983824 gidB Ureaplasma urealyticum serovar 10 str. ATCC 33699 16S rRNA methyltransferase GidB YP_002284457.1 49635 D 565575 CDS YP_002284458.1 209554144 6984088 complement(50361..50513) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 50513 6984088 UUR10_0045 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284458.1 50361 R 565575 CDS YP_002284459.1 209554249 6983819 50551..50730 1 NC_011374.1 hypothetical protein 50730 6983819 UUR10_0046 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284459.1 50551 D 565575 CDS YP_002284460.1 209554578 6983926 50796..51143 1 NC_011374.1 hypothetical protein 51143 6983926 UUR10_0047 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284460.1 50796 D 565575 CDS YP_002284461.1 209554141 6984261 51313..53829 1 NC_011374.1 identified by match to protein family HMM PF04200; lipoprotein 53829 6984261 UUR10_0048 Ureaplasma urealyticum serovar 10 str. ATCC 33699 lipoprotein YP_002284461.1 51313 D 565575 CDS YP_002284462.1 209554417 6983816 53852..56200 1 NC_011374.1 hypothetical protein 56200 6983816 UUR10_0049 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284462.1 53852 D 565575 CDS YP_002284463.1 209554276 6984095 56231..58735 1 NC_011374.1 identified by match to protein family HMM PF04200; lipoprotein 58735 6984095 UUR10_0050 Ureaplasma urealyticum serovar 10 str. ATCC 33699 lipoprotein YP_002284463.1 56231 D 565575 CDS YP_002284464.1 209554318 6983953 58772..61147 1 NC_011374.1 hypothetical protein 61147 6983953 UUR10_0051 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284464.1 58772 D 565575 CDS YP_002284465.1 209554400 6983995 61162..63765 1 NC_011374.1 lipoprotein 63765 6983995 UUR10_0052 Ureaplasma urealyticum serovar 10 str. ATCC 33699 lipoprotein YP_002284465.1 61162 D 565575 CDS YP_002284466.1 209554486 6984078 63795..65285 1 NC_011374.1 hypothetical protein 65285 6984078 UUR10_0053 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284466.1 63795 D 565575 CDS YP_002284467.1 209554571 6984167 65272..65787 1 NC_011374.1 hypothetical protein 65787 6984167 UUR10_0054 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284467.1 65272 D 565575 CDS YP_002284468.1 209554304 6984254 65790..66704 1 NC_011374.1 hypothetical protein 66704 6984254 UUR10_0055 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284468.1 65790 D 565575 CDS YP_002284469.1 209554060 6983981 66694..67173 1 NC_011374.1 hypothetical protein 67173 6983981 UUR10_0056 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284469.1 66694 D 565575 CDS YP_002284470.1 209554451 6983735 67163..69325 1 NC_011374.1 hypothetical protein 69325 6983735 UUR10_0057 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284470.1 67163 D 565575 CDS YP_002284471.1 209554222 6984130 69341..70876 1 NC_011374.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 70876 6984130 UUR10_0058 Ureaplasma urealyticum serovar 10 str. ATCC 33699 F0F1 ATP synthase subunit alpha YP_002284471.1 69341 D 565575 CDS YP_002284472.1 209554506 6983899 70876..72240 1 NC_011374.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 72240 6983899 UUR10_0059 Ureaplasma urealyticum serovar 10 str. ATCC 33699 F0F1 ATP synthase subunit beta YP_002284472.1 70876 D 565575 CDS YP_002284473.1 209554424 6984188 72397..73635 1 NC_011374.1 putative lipoprotein 73635 6984188 UUR10_0060 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284473.1 72397 D 565575 CDS YP_002284474.1 209554628 6984102 73874..77278 1 NC_011374.1 identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 77278 6984102 UUR10_0061 Ureaplasma urealyticum serovar 10 str. ATCC 33699 endonuclease/exonuclease/phosphatase family protein YP_002284474.1 73874 D 565575 CDS YP_002284475.1 209554548 6984313 77366..77590 1 NC_011374.1 identified by match to protein family HMM TIGR00810; preprotein translocase subunit SecG 77590 secG 6984313 secG Ureaplasma urealyticum serovar 10 str. ATCC 33699 preprotein translocase subunit SecG YP_002284475.1 77366 D 565575 CDS YP_002284476.1 209554185 6984230 77591..79756 1 NC_011374.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 79756 rnr 6984230 rnr Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribonuclease R YP_002284476.1 77591 D 565575 CDS YP_002284477.1 209554005 6983860 79768..80529 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 80529 6983860 UUR10_0064 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284477.1 79768 D 565575 CDS YP_002284478.1 209554063 6983680 80657..81082 1 NC_011374.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 81082 smpB 6983680 smpB Ureaplasma urealyticum serovar 10 str. ATCC 33699 SsrA-binding protein YP_002284478.1 80657 D 565575 CDS YP_002284479.1 209554119 6983738 81102..82841 1 NC_011374.1 identified by match to protein family HMM PF00005; ABC transporter, ATP-binding protein 82841 6983738 UUR10_0066 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ABC transporter, ATP-binding protein YP_002284479.1 81102 D 565575 CDS YP_002284480.1 209554595 6983794 82816..84612 1 NC_011374.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter, ATP-binding protein 84612 6983794 UUR10_0067 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ABC transporter, ATP-binding protein YP_002284480.1 82816 D 565575 CDS YP_002284481.1 209554555 6984278 84688..85482 1 NC_011374.1 hypothetical protein 85482 6984278 UUR10_0068 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284481.1 84688 D 565575 CDS YP_002284482.1 209554339 6984238 85560..87041 1 NC_011374.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 87041 lysS 6984238 lysS Ureaplasma urealyticum serovar 10 str. ATCC 33699 lysyl-tRNA synthetase YP_002284482.1 85560 D 565575 CDS YP_002284483.1 209554407 6984016 complement(87121..87387) 1 NC_011374.1 hypothetical protein 87387 6984016 UUR10_0070 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284483.1 87121 R 565575 CDS YP_002284484.1 209554183 6984085 complement(87412..89238) 1 NC_011374.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase F 89238 pepF_1 6984085 pepF_1 Ureaplasma urealyticum serovar 10 str. ATCC 33699 oligoendopeptidase F YP_002284484.1 87412 R 565575 CDS YP_002284485.1 209554621 6983858 89342..90223 1 NC_011374.1 identified by match to protein family HMM PF01515; phosphotransacetylase 90223 6983858 UUR10_0072 Ureaplasma urealyticum serovar 10 str. ATCC 33699 phosphotransacetylase YP_002284485.1 89342 D 565575 CDS YP_002284486.1 209554342 6984304 complement(90275..90889) 1 NC_011374.1 hypothetical protein 90889 6984304 UUR10_0073 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284486.1 90275 R 565575 CDS YP_002284487.1 209554357 6984019 complement(90927..91583) 1 NC_011374.1 hypothetical protein 91583 6984019 UUR10_0074 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284487.1 90927 R 565575 CDS YP_002284488.1 209554582 6984035 complement(91675..92550) 1 NC_011374.1 identified by similarity to SP:P15031; match to protein family HMM PF00005; iron(III) dicitrate transport ATP-binding protein fecE 92550 6984035 UUR10_0075 Ureaplasma urealyticum serovar 10 str. ATCC 33699 iron(III) dicitrate transport ATP-binding protein fecE YP_002284488.1 91675 R 565575 CDS YP_002284489.1 209554509 6984265 complement(92555..93625) 1 NC_011374.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; hemin transport system permease 93625 6984265 UUR10_0076 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hemin transport system permease YP_002284489.1 92555 R 565575 CDS YP_002284490.1 209554075 6984191 complement(93637..95607) 1 NC_011374.1 putative ABC substrate-binding protein - iron 95607 6984191 UUR10_0077 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative ABC substrate-binding protein - iron YP_002284490.1 93637 R 565575 CDS YP_002284491.1 209554284 6983750 95843..97171 1 NC_011374.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; hemolysin 97171 6983750 UUR10_0078 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hemolysin YP_002284491.1 95843 D 565575 CDS YP_002284492.1 209554066 6983961 complement(97198..98187) 1 NC_011374.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 98187 6983961 UUR10_0079 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284492.1 97198 R 565575 CDS YP_002284493.1 209554196 6983741 complement(98153..99082) 1 NC_011374.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; thioredoxin-disulfide reductase 99082 trxB 6983741 trxB Ureaplasma urealyticum serovar 10 str. ATCC 33699 thioredoxin-disulfide reductase YP_002284493.1 98153 R 565575 CDS YP_002284494.1 209554281 6983872 complement(99100..100107) 1 NC_011374.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 100107 lgt 6983872 lgt Ureaplasma urealyticum serovar 10 str. ATCC 33699 prolipoprotein diacylglyceryl transferase YP_002284494.1 99100 R 565575 CDS YP_002284495.1 209554040 6983958 complement(100108..101034) 1 NC_011374.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 101034 hprK 6983958 hprK Ureaplasma urealyticum serovar 10 str. ATCC 33699 HPr kinase/phosphorylase YP_002284495.1 100108 R 565575 CDS YP_002284496.1 209554128 6983715 complement(101034..102014) 1 NC_011374.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthetase 102014 tilS 6983715 tilS Ureaplasma urealyticum serovar 10 str. ATCC 33699 tRNA(Ile)-lysidine synthetase YP_002284496.1 101034 R 565575 CDS YP_002284497.1 209554113 6983803 complement(101986..102546) 1 NC_011374.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 102546 pth 6983803 pth Ureaplasma urealyticum serovar 10 str. ATCC 33699 peptidyl-tRNA hydrolase YP_002284497.1 101986 R 565575 CDS YP_002284498.1 209554064 6983788 102772..103911 1 NC_011374.1 identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III, beta subunit 103911 dnaN 6983788 dnaN Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA polymerase III, beta subunit YP_002284498.1 102772 D 565575 CDS YP_002284499.1 209554303 6983739 104106..104276 1 NC_011374.1 hypothetical protein 104276 6983739 UUR10_0086 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284499.1 104106 D 565575 CDS YP_002284500.1 209554430 6983980 104284..106236 1 NC_011374.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 106236 gyrB 6983980 gyrB Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA gyrase subunit B YP_002284500.1 104284 D 565575 CDS YP_002284501.1 209554572 6984108 106255..108789 1 NC_011374.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 108789 gyrA 6984108 gyrA Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA gyrase subunit A YP_002284501.1 106255 D 565575 CDS YP_002284502.1 209554540 6984255 108899..109369 1 NC_011374.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible protein CinA C- domain 109369 6984255 UUR10_0089 Ureaplasma urealyticum serovar 10 str. ATCC 33699 competence/damage-inducible protein CinA C- domain YP_002284502.1 108899 D 565575 CDS YP_002284503.1 209554392 6984222 109410..110411 1 NC_011374.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 110411 recA 6984222 recA Ureaplasma urealyticum serovar 10 str. ATCC 33699 recombinase A YP_002284503.1 109410 D 565575 CDS YP_002284504.1 209554159 6984070 110447..111868 1 NC_011374.1 identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277; hypothetical protein 111868 6984070 UUR10_0091 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284504.1 110447 D 565575 CDS YP_002284505.1 209554039 6983834 complement(111943..112458) 1 NC_011374.1 hypothetical protein 112458 6983834 UUR10_0092 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284505.1 111943 R 565575 CDS YP_002284506.1 209554269 6983714 complement(112612..112731) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 112731 6983714 UUR10_0093 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284506.1 112612 R 565575 CDS YP_002284507.1 209554150 6983946 complement(113066..114028) 1 NC_011374.1 hypothetical protein 114028 6983946 UUR10_0094 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284507.1 113066 R 565575 CDS YP_002284508.1 209554261 6983825 complement(114343..114525) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 114525 6983825 UUR10_0095 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284508.1 114343 R 565575 CDS YP_002284509.1 209554620 6983938 complement(114661..114846) 1 NC_011374.1 hypothetical protein 114846 6983938 UUR10_0096 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284509.1 114661 R 565575 CDS YP_002284510.1 209554565 6984303 complement(115168..115362) 1 NC_011374.1 hypothetical protein 115362 6984303 UUR10_0097 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284510.1 115168 R 565575 CDS YP_002284511.1 209554313 6984248 complement(115346..116044) 1 NC_011374.1 deoxyguanosine kinase 116044 6984248 UUR10_0098 Ureaplasma urealyticum serovar 10 str. ATCC 33699 deoxyguanosine kinase YP_002284511.1 115346 R 565575 CDS YP_002284512.1 209554162 6983990 116241..118052 1 NC_011374.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 118052 6983990 UUR10_0099 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA polymerase III subunits gamma and tau YP_002284512.1 116241 D 565575 CDS YP_002284513.1 209554533 6983837 118060..118359 1 NC_011374.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 118359 6983837 UUR10_0100 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284513.1 118060 D 565575 CDS YP_002284514.1 209554293 6984215 118369..118974 1 NC_011374.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 118974 recR 6984215 recR Ureaplasma urealyticum serovar 10 str. ATCC 33699 recombination protein RecR YP_002284514.1 118369 D 565575 CDS YP_002284515.1 209554359 6983970 complement(119776..120474) 1 NC_011374.1 identified by similarity to RF:XP_001579764.1; hypothetical protein 120474 6983970 UUR10_0102 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284515.1 119776 R 565575 CDS YP_002284516.1 209554600 6984037 120663..122009 1 NC_011374.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 122009 ffh 6984037 ffh Ureaplasma urealyticum serovar 10 str. ATCC 33699 signal recognition particle protein YP_002284516.1 120663 D 565575 CDS YP_002284517.1 209554045 6984283 122224..124014 1 NC_011374.1 hypothetical protein 124014 6984283 UUR10_0104 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284517.1 122224 D 565575 CDS YP_002284518.1 209554466 6983720 124014..124724 1 NC_011374.1 identified by match to protein family HMM PF00005; ABC transporter 124724 6983720 UUR10_0105 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ABC transporter YP_002284518.1 124014 D 565575 CDS YP_002284519.1 209554568 6984147 124843..128007 1 NC_011374.1 putative lipoprotein 128007 6984147 UUR10_0106 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284519.1 124843 D 565575 CDS YP_002284520.1 209554226 6984251 complement(128071..128328) 1 NC_011374.1 type I restriction modification DNA specificity family protein 128328 6984251 UUR10_0107 Ureaplasma urealyticum serovar 10 str. ATCC 33699 type I restriction modification DNA specificity family protein YP_002284520.1 128071 R 565575 CDS YP_002284521.1 209553994 6984129 complement(128977..129444) 1 NC_011374.1 hypothetical protein 129444 6984129 UUR10_0109 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284521.1 128977 R 565575 CDS YP_002284522.1 209554465 6983669 129669..132500 1 NC_011374.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 132500 uvrA 6983669 uvrA Ureaplasma urealyticum serovar 10 str. ATCC 33699 excinuclease ABC subunit A YP_002284522.1 129669 D 565575 CDS YP_002284523.1 209554103 6984146 132505..134169 1 NC_011374.1 putative lipoprotein 134169 6984146 UUR10_0111 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284523.1 132505 D 565575 CDS YP_002284524.1 209554021 6983778 134235..134816 1 NC_011374.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 134816 hpt 6983778 hpt Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypoxanthine phosphoribosyltransferase YP_002284524.1 134235 D 565575 CDS YP_002284525.1 209554157 6983696 134821..136968 1 NC_011374.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent zinc metallopeptidase - cell division protein 136968 6983696 UUR10_0113 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ATP-dependent zinc metallopeptidase - cell division protein YP_002284525.1 134821 D 565575 CDS YP_002284526.1 209554387 6983832 137079..138335 1 NC_011374.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 138335 serS 6983832 serS Ureaplasma urealyticum serovar 10 str. ATCC 33699 seryl-tRNA synthetase YP_002284526.1 137079 D 565575 CDS YP_002284527.1 209554011 6984065 138574..139728 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 139728 6984065 UUR10_0115 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284527.1 138574 D 565575 CDS YP_002284528.1 209554265 6983685 139805..140596 1 NC_011374.1 hypothetical protein 140596 6983685 UUR10_0116 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284528.1 139805 D 565575 CDS YP_002284529.1 209554508 6983942 140840..142399 1 NC_011374.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; spermidine/putrescine import ATP-binding protein PotA 142399 6983942 UUR10_0117 Ureaplasma urealyticum serovar 10 str. ATCC 33699 spermidine/putrescine import ATP-binding protein PotA YP_002284529.1 140840 D 565575 CDS YP_002284530.1 209554104 6984190 142383..143390 1 NC_011374.1 identified by match to protein family HMM PF00528; ABC transporter, permease protein 143390 6984190 UUR10_0118 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ABC transporter, permease protein YP_002284530.1 142383 D 565575 CDS YP_002284531.1 209554393 6983779 143377..144231 1 NC_011374.1 identified by match to protein family HMM PF00528; ABC transporter, permease protein 144231 6983779 UUR10_0119 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ABC transporter, permease protein YP_002284531.1 143377 D 565575 CDS YP_002284532.1 209554178 6984071 144235..146271 1 NC_011374.1 identified by match to protein family HMM PF02030; putative lipoprotein 146271 6984071 UUR10_0120 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284532.1 144235 D 565575 CDS YP_002284533.1 209554080 6983853 146390..146992 1 NC_011374.1 hypothetical protein 146992 6983853 UUR10_0121 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284533.1 146390 D 565575 CDS YP_002284534.1 209554562 6983755 147057..148187 1 NC_011374.1 hypothetical protein 148187 6983755 UUR10_0122 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284534.1 147057 D 565575 CDS YP_002284535.1 209554557 6984245 148209..149156 1 NC_011374.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; pseudouridine synthase 149156 6984245 UUR10_0123 Ureaplasma urealyticum serovar 10 str. ATCC 33699 pseudouridine synthase YP_002284535.1 148209 D 565575 CDS YP_002284536.1 209554462 6984323 154442..154912 1 NC_011374.1 identified by match to protein family HMM PF00186; dihydrofolate reductase 154912 folA 6984323 folA Ureaplasma urealyticum serovar 10 str. ATCC 33699 dihydrofolate reductase YP_002284536.1 154442 D 565575 CDS YP_002284537.1 209554379 6984143 154921..155598 1 NC_011374.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 155598 6984143 UUR10_0128 Ureaplasma urealyticum serovar 10 str. ATCC 33699 phosphoglycolate phosphatase YP_002284537.1 154921 D 565575 CDS YP_002284538.1 209554315 6984353 complement(155792..156415) 1 NC_011374.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 156415 upp 6984353 upp Ureaplasma urealyticum serovar 10 str. ATCC 33699 uracil phosphoribosyltransferase YP_002284538.1 155792 R 565575 CDS YP_002284539.1 209554094 6984320 complement(156662..157909) 1 NC_011374.1 identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase 157909 tyrS 6984320 tyrS Ureaplasma urealyticum serovar 10 str. ATCC 33699 tyrosyl-tRNA synthetase YP_002284539.1 156662 R 565575 CDS YP_002284540.1 209553991 6983769 158041..158943 1 NC_011374.1 identified by match to protein family HMM PF00005; ABC Transporter 158943 6983769 UUR10_0133 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ABC Transporter YP_002284540.1 158041 D 565575 CDS YP_002284541.1 209554554 6983666 158960..161482 1 NC_011374.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 161482 secA 6983666 secA Ureaplasma urealyticum serovar 10 str. ATCC 33699 preprotein translocase subunit SecA YP_002284541.1 158960 D 565575 CDS YP_002284542.1 209554160 6984237 161485..163485 1 NC_011374.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 163485 uvrB 6984237 uvrB Ureaplasma urealyticum serovar 10 str. ATCC 33699 excinuclease ABC subunit B YP_002284542.1 161485 D 565575 CDS YP_002284543.1 209554205 6983835 163579..165600 1 NC_011374.1 identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase, NAD-dependent 165600 ligA 6983835 ligA Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA ligase, NAD-dependent YP_002284543.1 163579 D 565575 CDS YP_002284544.1 209554338 6983881 165837..166532 1 NC_011374.1 hypothetical protein 166532 6983881 UUR10_0137 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284544.1 165837 D 565575 CDS YP_002284545.1 209554323 6984015 166546..167856 1 NC_011374.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 167856 cysS 6984015 cysS Ureaplasma urealyticum serovar 10 str. ATCC 33699 cysteinyl-tRNA synthetase YP_002284545.1 166546 D 565575 CDS YP_002284546.1 209554566 6984000 167858..168577 1 NC_011374.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase, TrmH family, group 3 168577 6984000 UUR10_0139 Ureaplasma urealyticum serovar 10 str. ATCC 33699 RNA methyltransferase, TrmH family, group 3 YP_002284546.1 167858 D 565575 CDS YP_002284547.1 209554521 6984249 complement(168585..169769) 1 NC_011374.1 putative lipoprotein 169769 6984249 UUR10_0140 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284547.1 168585 R 565575 CDS YP_002284548.1 209554137 6984203 complement(169781..173056) 1 NC_011374.1 hypothetical protein 173056 6984203 UUR10_0141 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284548.1 169781 R 565575 CDS YP_002284549.1 209554086 6983812 complement(173181..173486) 1 NC_011374.1 hypothetical protein 173486 6983812 UUR10_0142 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284549.1 173181 R 565575 CDS YP_002284550.1 209554017 6983761 complement(173630..174040) 1 NC_011374.1 identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1, epsilon subunit 174040 atpC 6983761 atpC Ureaplasma urealyticum serovar 10 str. ATCC 33699 ATP synthase F1, epsilon subunit YP_002284550.1 173630 R 565575 CDS YP_002284551.1 209554411 6983691 complement(174040..175434) 1 NC_011374.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 175434 atpD 6983691 atpD Ureaplasma urealyticum serovar 10 str. ATCC 33699 F0F1 ATP synthase subunit beta YP_002284551.1 174040 R 565575 CDS YP_002284552.1 209554270 6984089 complement(175458..176318) 1 NC_011374.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 176318 atpG 6984089 atpG Ureaplasma urealyticum serovar 10 str. ATCC 33699 F0F1 ATP synthase subunit gamma YP_002284552.1 175458 R 565575 CDS YP_002284553.1 209554065 6983947 complement(176320..177111) 1 NC_011374.1 hypothetical protein 177111 6983947 UUR10_0146 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284553.1 176320 R 565575 CDS YP_002284554.1 209554117 6983740 complement(177126..179519) 1 NC_011374.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 179519 atpA 6983740 atpA Ureaplasma urealyticum serovar 10 str. ATCC 33699 F0F1 ATP synthase subunit alpha YP_002284554.1 177126 R 565575 CDS YP_002284555.1 209554018 6983792 complement(179522..179821) 1 NC_011374.1 ATP synthase delta subunit domain protein 179821 6983792 UUR10_0148 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ATP synthase delta subunit domain protein YP_002284555.1 179522 R 565575 CDS YP_002284556.1 209554219 6983692 complement(179831..180370) 1 NC_011374.1 identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1, delta subunit 180370 atpH 6983692 atpH Ureaplasma urealyticum serovar 10 str. ATCC 33699 ATP synthase F1, delta subunit YP_002284556.1 179831 R 565575 CDS YP_002284557.1 209554500 6983896 complement(180374..180766) 1 NC_011374.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 180766 6983896 UUR10_0150 Ureaplasma urealyticum serovar 10 str. ATCC 33699 F0F1 ATP synthase subunit B YP_002284557.1 180374 R 565575 CDS YP_002284558.1 209554034 6984182 180741..181007 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 181007 6984182 UUR10_0151 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284558.1 180741 D 565575 CDS YP_002284559.1 209554333 6983709 complement(181059..181388) 1 NC_011374.1 identified by match to protein family HMM PF00137; ATP synthase, C subunit 181388 6983709 UUR10_0152 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ATP synthase, C subunit YP_002284559.1 181059 R 565575 CDS YP_002284560.1 209554519 6984010 complement(181451..182278) 1 NC_011374.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 182278 atpB 6984010 atpB Ureaplasma urealyticum serovar 10 str. ATCC 33699 F0F1 ATP synthase subunit A YP_002284560.1 181451 R 565575 CDS YP_002284561.1 209554186 6984201 complement(182319..182744) 1 NC_011374.1 hypothetical protein 182744 6984201 UUR10_0154 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284561.1 182319 R 565575 CDS YP_002284562.1 209554546 6983861 182980..183690 1 NC_011374.1 hypothetical protein 183690 6983861 UUR10_0155 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284562.1 182980 D 565575 CDS YP_002284563.1 209554096 6984228 183759..186704 1 NC_011374.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; p115 protein 186704 6984228 UUR10_0156 Ureaplasma urealyticum serovar 10 str. ATCC 33699 p115 protein YP_002284563.1 183759 D 565575 CDS YP_002284564.1 209554046 6983771 186707..187762 1 NC_011374.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 187762 ftsY 6983771 ftsY Ureaplasma urealyticum serovar 10 str. ATCC 33699 signal recognition particle-docking protein FtsY YP_002284564.1 186707 D 565575 CDS YP_002284565.1 209554334 6983721 187752..188051 1 NC_011374.1 identified by match to protein family HMM PF04297; putative DNA-binding protein 188051 6983721 UUR10_0158 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative DNA-binding protein YP_002284565.1 187752 D 565575 CDS YP_002284566.1 209554551 6984011 complement(188155..191952) 1 NC_011374.1 hypothetical protein 191952 6984011 UUR10_0159 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284566.1 188155 R 565575 CDS YP_002284567.1 209554286 6984337 complement(192392..194146) 1 NC_011374.1 multiple banded antigen 194146 6984337 UUR10_0162 Ureaplasma urealyticum serovar 10 str. ATCC 33699 multiple banded antigen YP_002284567.1 192392 R 565575 CDS YP_002284568.1 209554223 6983963 194416..195504 1 NC_011374.1 hypothetical protein 195504 6983963 UUR10_0163 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284568.1 194416 D 565575 CDS YP_002284569.1 209553997 6983900 complement(195558..197630) 1 NC_011374.1 hypothetical protein 197630 6983900 UUR10_0164 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284569.1 195558 R 565575 CDS YP_002284570.1 209554242 6983672 complement(197718..198599) 1 NC_011374.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD hydrolase, IIB family 198599 6983672 UUR10_0165 Ureaplasma urealyticum serovar 10 str. ATCC 33699 HAD hydrolase, IIB family YP_002284570.1 197718 R 565575 CDS YP_002284571.1 209554624 6983919 complement(198625..199626) 1 NC_011374.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 199626 trpS 6983919 trpS Ureaplasma urealyticum serovar 10 str. ATCC 33699 tryptophanyl-tRNA synthetase YP_002284571.1 198625 R 565575 CDS YP_002284572.1 209554494 6984307 199752..200141 1 NC_011374.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 200141 6984307 UUR10_0167 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284572.1 199752 D 565575 CDS YP_002284573.1 209554399 6984175 200128..200940 1 NC_011374.1 identified by match to protein family HMM PF01513; NAD(+)/NADH kinase family protein 200940 6984175 UUR10_0168 Ureaplasma urealyticum serovar 10 str. ATCC 33699 NAD(+)/NADH kinase family protein YP_002284573.1 200128 D 565575 CDS YP_002284574.1 209554370 6984077 200948..201328 1 NC_011374.1 identified by similarity to GB:BAC44251.1; hypothetical protein 201328 6984077 UUR10_0169 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284574.1 200948 D 565575 CDS YP_002284575.1 209554275 6984048 201423..201644 1 NC_011374.1 hypothetical protein 201644 6984048 UUR10_0170 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284575.1 201423 D 565575 CDS YP_002284576.1 209554168 6983952 complement(201646..202125) 1 NC_011374.1 identified by similarity to SP:Q9PQW3; match to protein family HMM PF02590; conserved hypothetical protein TIGR00246 202125 6983952 UUR10_0171 Ureaplasma urealyticum serovar 10 str. ATCC 33699 conserved hypothetical protein TIGR00246 YP_002284576.1 201646 R 565575 CDS YP_002284577.1 209554062 6983843 202180..202905 1 NC_011374.1 identified by match to protein family HMM PF00121; triosephosphate isomerase 202905 tpiA 6983843 tpiA Ureaplasma urealyticum serovar 10 str. ATCC 33699 triosephosphate isomerase YP_002284577.1 202180 D 565575 CDS YP_002284578.1 209554575 6983737 202936..204444 1 NC_011374.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 204444 gpmI 6983737 gpmI Ureaplasma urealyticum serovar 10 str. ATCC 33699 phosphoglyceromutase YP_002284578.1 202936 D 565575 CDS YP_002284579.1 209554515 6984258 204487..205362 1 NC_011374.1 hypothetical protein 205362 6984258 UUR10_0174 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284579.1 204487 D 565575 CDS YP_002284580.1 209554341 6984197 205481..206803 1 NC_011374.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 206803 eno 6984197 eno Ureaplasma urealyticum serovar 10 str. ATCC 33699 phosphopyruvate hydratase YP_002284580.1 205481 D 565575 CDS YP_002284581.1 209554299 6984018 206772..207737 1 NC_011374.1 identified by match to protein family HMM PF00365; phosphofructokinase family protein 207737 6984018 UUR10_0176 Ureaplasma urealyticum serovar 10 str. ATCC 33699 phosphofructokinase family protein YP_002284581.1 206772 D 565575 CDS YP_002284582.1 209554106 6983976 207749..209173 1 NC_011374.1 identified by match to protein family HMM PF00224; match to protein family HMM TIGR01064; pyruvate kinase 209173 pyk 6983976 pyk Ureaplasma urealyticum serovar 10 str. ATCC 33699 pyruvate kinase YP_002284582.1 207749 D 565575 CDS YP_002284583.1 209554116 6983781 209295..213599 1 NC_011374.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 213599 rpoB 6983781 rpoB Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA-directed RNA polymerase subunit beta YP_002284583.1 209295 D 565575 CDS YP_002284584.1 209554253 6983791 213621..217538 1 NC_011374.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 217538 rpoC 6983791 rpoC Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA-directed RNA polymerase subunit beta' YP_002284584.1 213621 D 565575 CDS YP_002284585.1 209554152 6983930 217678..218568 1 NC_011374.1 multiple banded antigen 218568 6983930 UUR10_0180 Ureaplasma urealyticum serovar 10 str. ATCC 33699 multiple banded antigen YP_002284585.1 217678 D 565575 CDS YP_002284586.1 209554425 6983827 complement(218666..219520) 1 NC_011374.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; EDD domain protein, DegV family 219520 6983827 UUR10_0181 Ureaplasma urealyticum serovar 10 str. ATCC 33699 EDD domain protein, DegV family YP_002284586.1 218666 R 565575 CDS YP_002284587.1 209554324 6984103 219666..220262 1 NC_011374.1 identified by match to protein family HMM PF01588; putative tRNA binding domain protein 220262 6984103 UUR10_0182 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative tRNA binding domain protein YP_002284587.1 219666 D 565575 CDS YP_002284588.1 209554564 6984001 220287..221282 1 NC_011374.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 221282 prs 6984001 prs Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribose-phosphate pyrophosphokinase YP_002284588.1 220287 D 565575 CDS YP_002284589.1 209554538 6984247 221286..221825 1 NC_011374.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase homolog 221825 6984247 UUR10_0184 Ureaplasma urealyticum serovar 10 str. ATCC 33699 primase homolog YP_002284589.1 221286 D 565575 CDS YP_002284590.1 209554083 6984220 221829..222668 1 NC_011374.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 222668 6984220 UUR10_0185 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284590.1 221829 D 565575 CDS YP_002284591.1 209554055 6983758 222670..223896 1 NC_011374.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07728; recombination factor protein RarA 223896 6983758 UUR10_0186 Ureaplasma urealyticum serovar 10 str. ATCC 33699 recombination factor protein RarA YP_002284591.1 222670 D 565575 CDS YP_002284592.1 209554038 6983730 223916..225481 1 NC_011374.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 225481 metG 6983730 metG Ureaplasma urealyticum serovar 10 str. ATCC 33699 methionyl-tRNA synthetase YP_002284592.1 223916 D 565575 CDS YP_002284593.1 209554328 6983713 225569..226741 1 NC_011374.1 hypothetical protein 226741 6983713 UUR10_0188 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284593.1 225569 D 565575 CDS YP_002284594.1 209554259 6984005 226741..228936 1 NC_011374.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate transport system permease 228936 6984005 UUR10_0189 Ureaplasma urealyticum serovar 10 str. ATCC 33699 phosphate transport system permease YP_002284594.1 226741 D 565575 CDS YP_002284595.1 209554133 6983936 228941..229930 1 NC_011374.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 229930 pstB 6983936 pstB Ureaplasma urealyticum serovar 10 str. ATCC 33699 phosphate ABC transporter ATP-binding protein YP_002284595.1 228941 D 565575 CDS YP_002284596.1 209554124 6983808 229954..230610 1 NC_011374.1 identified by match to protein family HMM PF01895; PhoU family 230610 6983808 UUR10_0191 Ureaplasma urealyticum serovar 10 str. ATCC 33699 PhoU family YP_002284596.1 229954 D 565575 CDS YP_002284597.1 209554257 6983799 230770..230994 1 NC_011374.1 hypothetical protein 230994 6983799 UUR10_0192 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284597.1 230770 D 565575 CDS YP_002284598.1 209554173 6983934 230998..233127 1 NC_011374.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; copper-transporting P-type ATPase 233127 6983934 UUR10_0193 Ureaplasma urealyticum serovar 10 str. ATCC 33699 copper-transporting P-type ATPase YP_002284598.1 230998 D 565575 CDS YP_002284599.1 209554397 6983848 complement(233593..235746) 1 NC_011374.1 multiple banded antigen 235746 6983848 UUR10_0194 Ureaplasma urealyticum serovar 10 str. ATCC 33699 multiple banded antigen YP_002284599.1 233593 R 565575 CDS YP_002284600.1 209554364 6984075 complement(236094..236363) 1 NC_011374.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 236363 rpsO 6984075 rpsO Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S15 YP_002284600.1 236094 R 565575 CDS YP_002284601.1 209554634 6984042 complement(236474..237184) 1 NC_011374.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 237184 rnc 6984042 rnc Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribonuclease III YP_002284601.1 236474 R 565575 CDS YP_002284602.1 209554093 6984319 complement(237174..238169) 1 NC_011374.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 238169 plsX 6984319 plsX Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative glycerol-3-phosphate acyltransferase PlsX YP_002284602.1 237174 R 565575 CDS YP_002284603.1 209554467 6983768 complement(238174..239868) 1 NC_011374.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599; DAK2 domain protein 239868 6983768 UUR10_0198 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DAK2 domain protein YP_002284603.1 238174 R 565575 CDS YP_002284604.1 209554244 6984148 complement(239883..240149) 1 NC_011374.1 hypothetical protein 240149 6984148 UUR10_0199 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284604.1 239883 R 565575 CDS YP_002284605.1 209554288 6983921 complement(240252..240869) 1 NC_011374.1 hypothetical protein 240869 6983921 UUR10_0200 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284605.1 240252 R 565575 CDS YP_002284606.1 209554033 6983965 241005..241199 1 NC_011374.1 required for 70S ribosome assembly; 50S ribosomal protein L28 241199 rpmB 6983965 rpmB Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L28 YP_002284606.1 241005 D 565575 CDS YP_002284607.1 209554337 6983708 complement(241443..242135) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 242135 6983708 UUR10_0202 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284607.1 241443 R 565575 CDS YP_002284608.1 209554207 6984014 complement(242246..242548) 1 NC_011374.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 242548 rpmA 6984014 rpmA Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L27 YP_002284608.1 242246 R 565575 CDS YP_002284609.1 209554520 6983883 complement(242554..242862) 1 NC_011374.1 identified by match to protein family HMM PF04327; hypothetical protein 242862 6983883 UUR10_0204 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284609.1 242554 R 565575 CDS YP_002284610.1 209554618 6984202 complement(242868..243170) 1 NC_011374.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 243170 rplU 6984202 rplU Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L21 YP_002284610.1 242868 R 565575 CDS YP_002284611.1 209554054 6984301 243477..244049 1 NC_011374.1 identified by match to protein family HMM PF00625; match to protein family HMM TIGR03263; guanylate kinase 244049 gmk 6984301 gmk Ureaplasma urealyticum serovar 10 str. ATCC 33699 guanylate kinase YP_002284611.1 243477 D 565575 CDS YP_002284612.1 209554199 6983729 244033..245040 1 NC_011374.1 hypothetical protein 245040 6983729 UUR10_0208 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284612.1 244033 D 565575 CDS YP_002284613.1 209554445 6983875 245044..245787 1 NC_011374.1 identified by match to protein family HMM PF00481; protein phosphatase 245787 6983875 UUR10_0209 Ureaplasma urealyticum serovar 10 str. ATCC 33699 protein phosphatase YP_002284613.1 245044 D 565575 CDS YP_002284614.1 209554363 6984123 245792..246952 1 NC_011374.1 identified by match to protein family HMM PF00069; serine/threonine kinase 246952 6984123 UUR10_0210 Ureaplasma urealyticum serovar 10 str. ATCC 33699 serine/threonine kinase YP_002284614.1 245792 D 565575 CDS YP_002284615.1 209554493 6984041 246955..247860 1 NC_011374.1 identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; ribosome small subunit-dependent GTPase A 247860 rsgA 6984041 rsgA Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribosome small subunit-dependent GTPase A YP_002284615.1 246955 D 565575 CDS YP_002284616.1 209554477 6984174 248058..249581 1 NC_011374.1 identified by match to protein family HMM PF00909; ammonium transporter 249581 6984174 UUR10_0212 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ammonium transporter YP_002284616.1 248058 D 565575 CDS YP_002284617.1 209554074 6984158 249754..251316 1 NC_011374.1 identified by match to protein family HMM PF00909; ammonium transporter 251316 6984158 UUR10_0213 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ammonium transporter YP_002284617.1 249754 D 565575 CDS YP_002284618.1 209554006 6983749 251433..252749 1 NC_011374.1 hypothetical protein 252749 6983749 UUR10_0214 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284618.1 251433 D 565575 CDS YP_002284619.1 209554255 6983681 252763..254328 1 NC_011374.1 identified by match to protein family HMM PF01268; formate--tetrahydrofolate ligase 254328 fhs 6983681 fhs Ureaplasma urealyticum serovar 10 str. ATCC 33699 formate--tetrahydrofolate ligase YP_002284619.1 252763 D 565575 CDS YP_002284620.1 209554447 6983932 254459..255211 1 NC_011374.1 identified by match to protein family HMM PF00589; tyrosine recombinase XerC 255211 6983932 UUR10_0216 Ureaplasma urealyticum serovar 10 str. ATCC 33699 tyrosine recombinase XerC YP_002284620.1 254459 D 565575 CDS YP_002284621.1 209554377 6984125 255425..257773 1 NC_011374.1 identified by match to protein family HMM PF00324; amino acid antiporter 257773 6984125 UUR10_0217 Ureaplasma urealyticum serovar 10 str. ATCC 33699 amino acid antiporter YP_002284621.1 255425 D 565575 CDS YP_002284622.1 209554111 6984055 257948..259096 1 NC_011374.1 putative lipoprotein 259096 6984055 UUR10_0218 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284622.1 257948 D 565575 CDS YP_002284623.1 209554295 6983786 259153..259470 1 NC_011374.1 putative lipoprotein 259470 6983786 UUR10_0219 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284623.1 259153 D 565575 CDS YP_002284624.1 209554043 6983972 259480..259923 1 NC_011374.1 hypothetical protein 259923 6983972 UUR10_0220 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284624.1 259480 D 565575 CDS YP_002284625.1 209554418 6983718 260097..261650 1 NC_011374.1 identified by match to protein family HMM PF02608; hypothetical protein 261650 6983718 UUR10_0221 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284625.1 260097 D 565575 CDS YP_002284626.1 209554380 6984096 261848..262411 1 NC_011374.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 262411 infC 6984096 infC Ureaplasma urealyticum serovar 10 str. ATCC 33699 translation initiation factor IF-3 YP_002284626.1 261848 D 565575 CDS YP_002284627.1 209554558 6984058 262426..262620 1 NC_011374.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 262620 rpmI 6984058 rpmI Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L35 YP_002284627.1 262426 D 565575 CDS YP_002284628.1 209554474 6984241 262675..263037 1 NC_011374.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 263037 rplT 6984241 rplT Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L20 YP_002284628.1 262675 D 565575 CDS YP_002284629.1 209554077 6984155 263257..263562 1 NC_011374.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 263562 rpsJ 6984155 rpsJ Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S10 YP_002284629.1 263257 D 565575 CDS YP_002284630.1 209553992 6983752 263585..264286 1 NC_011374.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 264286 rplC 6983752 rplC Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L3 YP_002284630.1 263585 D 565575 CDS YP_002284631.1 209554081 6983667 264297..264932 1 NC_011374.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 264932 rplD 6983667 rplD Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L4 YP_002284631.1 264297 D 565575 CDS YP_002284632.1 209554235 6983756 264935..265252 1 NC_011374.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 265252 rplW 6983756 rplW Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L23 YP_002284632.1 264935 D 565575 CDS YP_002284633.1 209554169 6983912 265306..266145 1 NC_011374.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 266145 rplB 6983912 rplB Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L2 YP_002284633.1 265306 D 565575 CDS YP_002284634.1 209554132 6983844 266166..266432 1 NC_011374.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 266432 rpsS 6983844 rpsS Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S19 YP_002284634.1 266166 D 565575 CDS YP_002284635.1 209554129 6983807 266454..267389 1 NC_011374.1 fusion of L22 and COG4933; 50S ribosomal protein L22/unknown domain fusion protein 267389 6983807 UUR10_0231 Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L22/unknown domain fusion protein YP_002284635.1 266454 D 565575 CDS YP_002284636.1 209554200 6983804 267409..268182 1 NC_011374.1 identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; ribosomal protein S3 268182 rpsC 6983804 rpsC Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribosomal protein S3 YP_002284636.1 267409 D 565575 CDS YP_002284637.1 209554290 6983876 268197..268613 1 NC_011374.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 268613 rplP 6983876 rplP Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L16 YP_002284637.1 268197 D 565575 CDS YP_002284638.1 209554352 6983967 268613..268840 1 NC_011374.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 268840 rpmC 6983967 rpmC Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L29 YP_002284638.1 268613 D 565575 CDS YP_002284639.1 209554327 6984030 268840..269094 1 NC_011374.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 269094 rpsQ 6984030 rpsQ Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S17 YP_002284639.1 268840 D 565575 CDS YP_002284640.1 209554461 6984004 269114..269482 1 NC_011374.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 269482 rplN 6984004 rplN Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L14 YP_002284640.1 269114 D 565575 CDS YP_002284641.1 209554542 6984142 269497..269829 1 NC_011374.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 269829 rplX 6984142 rplX Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L24 YP_002284641.1 269497 D 565575 CDS YP_002284642.1 209554607 6984224 269846..270400 1 NC_011374.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 270400 rplE 6984224 rplE Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L5 YP_002284642.1 269846 D 565575 CDS YP_002284643.1 209553990 6984290 270404..270589 1 NC_011374.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 270589 rpsN 6984290 rpsN Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S14 YP_002284643.1 270404 D 565575 CDS YP_002284644.1 209554626 6983665 270600..270998 1 NC_011374.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 270998 rpsH 6983665 rpsH Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S8 YP_002284644.1 270600 D 565575 CDS YP_002284645.1 209554264 6984309 271007..271555 1 NC_011374.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 271555 rplF 6984309 rplF Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L6 YP_002284645.1 271007 D 565575 CDS YP_002284646.1 209554087 6983941 271574..271939 1 NC_011374.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 271939 rplR 6983941 rplR Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L18 YP_002284646.1 271574 D 565575 CDS YP_002284647.1 209554268 6983762 271957..272568 1 NC_011374.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 272568 rpsE 6983762 rpsE Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S5 YP_002284647.1 271957 D 565575 CDS YP_002284648.1 209554163 6983945 272585..273031 1 NC_011374.1 late assembly protein; 50S ribosomal protein L15 273031 rplO 6983945 rplO Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L15 YP_002284648.1 272585 D 565575 CDS YP_002284649.1 209554443 6983838 273084..274499 1 NC_011374.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 274499 secY 6983838 secY Ureaplasma urealyticum serovar 10 str. ATCC 33699 preprotein translocase subunit SecY YP_002284649.1 273084 D 565575 CDS YP_002284650.1 209554390 6984121 274509..275150 1 NC_011374.1 identified by match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351; adenylate kinase 275150 6984121 UUR10_0246 Ureaplasma urealyticum serovar 10 str. ATCC 33699 adenylate kinase YP_002284650.1 274509 D 565575 CDS YP_002284651.1 209554627 6984068 275174..275923 1 NC_011374.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase, type I 275923 map 6984068 map Ureaplasma urealyticum serovar 10 str. ATCC 33699 methionine aminopeptidase, type I YP_002284651.1 275174 D 565575 CDS YP_002284652.1 209554389 6984311 275951..276175 1 NC_011374.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 276175 infA 6984311 infA Ureaplasma urealyticum serovar 10 str. ATCC 33699 translation initiation factor IF-1 YP_002284652.1 275951 D 565575 CDS YP_002284653.1 209554593 6984067 276199..276312 1 NC_011374.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 276312 rpmJ 6984067 rpmJ Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L36 YP_002284653.1 276199 D 565575 CDS YP_002284654.1 209554322 6984276 276342..276740 1 NC_011374.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 276740 rpsM 6984276 rpsM Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S13 YP_002284654.1 276342 D 565575 CDS YP_002284655.1 209554050 6983999 276762..277127 1 NC_011374.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 277127 rpsK 6983999 rpsK Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S11 YP_002284655.1 276762 D 565575 CDS YP_002284656.1 209554135 6983725 277164..278147 1 NC_011374.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 278147 rpoA 6983725 rpoA Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA-directed RNA polymerase subunit alpha YP_002284656.1 277164 D 565575 CDS YP_002284657.1 209554227 6983810 278175..278534 1 NC_011374.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 278534 rplQ 6983810 rplQ Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L17 YP_002284657.1 278175 D 565575 CDS YP_002284658.1 209554250 6983904 278636..278941 1 NC_011374.1 merozoite capping protein-1 278941 6983904 UUR10_0254 Ureaplasma urealyticum serovar 10 str. ATCC 33699 merozoite capping protein-1 YP_002284658.1 278636 D 565575 CDS YP_002284659.1 209554432 6983927 279085..280953 1 NC_011374.1 hypothetical protein 280953 6983927 UUR10_0255 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284659.1 279085 D 565575 CDS YP_002284660.1 209554175 6984110 280956..282263 1 NC_011374.1 putative lipoprotein 282263 6984110 UUR10_0256 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284660.1 280956 D 565575 CDS YP_002284661.1 209554584 6983850 282346..282753 1 NC_011374.1 hypothetical protein 282753 6983850 UUR10_0257 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284661.1 282346 D 565575 CDS YP_002284662.1 209554085 6984267 282743..283330 1 NC_011374.1 identified by match to protein family HMM PF01205; proline dipeptidase 283330 6984267 UUR10_0258 Ureaplasma urealyticum serovar 10 str. ATCC 33699 proline dipeptidase YP_002284662.1 282743 D 565575 CDS YP_002284663.1 209554052 6983760 complement(283384..285162) 1 NC_011374.1 putative lipoprotein 285162 6983760 UUR10_0259 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284663.1 283384 R 565575 CDS YP_002284664.1 209554004 6983727 complement(285340..288324) 1 NC_011374.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; calcium-translocating P-type ATPase, PMCA-type 288324 6983727 UUR10_0260 Ureaplasma urealyticum serovar 10 str. ATCC 33699 calcium-translocating P-type ATPase, PMCA-type YP_002284664.1 285340 R 565575 CDS YP_002284665.1 209554421 6983679 288491..288820 1 NC_011374.1 identified by match to protein family HMM PF03672; hypothetical protein 288820 6983679 UUR10_0261 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284665.1 288491 D 565575 CDS YP_002284666.1 209554309 6984099 288825..289451 1 NC_011374.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 289451 engB 6984099 engB Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribosome biogenesis GTP-binding protein YsxC YP_002284666.1 288825 D 565575 CDS YP_002284667.1 209554355 6983986 289432..292056 1 NC_011374.1 identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422; valyl-tRNA synthetase 292056 valS 6983986 valS Ureaplasma urealyticum serovar 10 str. ATCC 33699 valyl-tRNA synthetase YP_002284667.1 289432 D 565575 CDS YP_002284668.1 209554398 6984033 292060..292578 1 NC_011374.1 identified by match to protein family HMM PF00588; RNA methyltransferase, TrmH family 292578 6984033 UUR10_0264 Ureaplasma urealyticum serovar 10 str. ATCC 33699 RNA methyltransferase, TrmH family YP_002284668.1 292060 D 565575 CDS YP_002284669.1 209554524 6984076 292584..293258 1 NC_011374.1 identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091; tRNA (guanine-N(7)-)-methyltransferase 293258 trmB 6984076 trmB Ureaplasma urealyticum serovar 10 str. ATCC 33699 tRNA (guanine-N(7)-)-methyltransferase YP_002284669.1 292584 D 565575 CDS YP_002284670.1 209554101 6984352 293531..294202 1 NC_011374.1 hypothetical protein 294202 6984352 UUR10_0267 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284670.1 293531 D 565575 CDS YP_002284671.1 209554237 6983776 294249..295598 1 NC_011374.1 hypothetical protein 295598 6983776 UUR10_0268 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284671.1 294249 D 565575 CDS YP_002284672.1 209554032 6983914 295598..296056 1 NC_011374.1 identified by match to protein family HMM PF01230; histidine triad protein HIT 296056 6983914 UUR10_0269 Ureaplasma urealyticum serovar 10 str. ATCC 33699 histidine triad protein HIT YP_002284672.1 295598 D 565575 CDS YP_002284673.1 209554416 6983707 296070..296822 1 NC_011374.1 hypothetical protein 296822 6983707 UUR10_0271 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284673.1 296070 D 565575 CDS YP_002284674.1 209554476 6984094 complement(296819..297883) 1 NC_011374.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 297883 6984094 UUR10_0270 Ureaplasma urealyticum serovar 10 str. ATCC 33699 coproporphyrinogen III oxidase YP_002284674.1 296819 R 565575 CDS YP_002284675.1 209554455 6984157 complement(297896..298105) 1 NC_011374.1 hypothetical protein 298105 6984157 UUR10_0272 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284675.1 297896 R 565575 CDS YP_002284676.1 209554371 6984134 298282..298827 1 NC_011374.1 hypothetical protein 298827 6984134 UUR10_0273 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284676.1 298282 D 565575 CDS YP_002284677.1 209554314 6984049 298831..299922 1 NC_011374.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 299922 6984049 UUR10_0274 Ureaplasma urealyticum serovar 10 str. ATCC 33699 nicotinate phosphoribosyltransferase YP_002284677.1 298831 D 565575 CDS YP_002284678.1 209554155 6983991 299998..300165 1 NC_011374.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 300165 rpsU 6983991 rpsU Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S21 YP_002284678.1 299998 D 565575 CDS YP_002284679.1 209554068 6983830 300285..301931 1 NC_011374.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 301931 argS 6983830 argS Ureaplasma urealyticum serovar 10 str. ATCC 33699 arginyl-tRNA synthetase YP_002284679.1 300285 D 565575 CDS YP_002284680.1 209554107 6983743 301934..303202 1 NC_011374.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 303202 pgk 6983743 pgk Ureaplasma urealyticum serovar 10 str. ATCC 33699 phosphoglycerate kinase YP_002284680.1 301934 D 565575 CDS YP_002284681.1 209554192 6983782 303206..304297 1 NC_011374.1 identified by match to protein family HMM PF05343; endo-1,4-beta-glucanase 304297 6983782 UUR10_0278 Ureaplasma urealyticum serovar 10 str. ATCC 33699 endo-1,4-beta-glucanase YP_002284681.1 303206 D 565575 CDS YP_002284682.1 209554239 6983867 304372..305091 1 NC_011374.1 identified by match to protein family HMM PF01048; match to protein family HMM TIGR00107; purine nucleoside phosphorylase 305091 deoD 6983867 deoD Ureaplasma urealyticum serovar 10 str. ATCC 33699 purine nucleoside phosphorylase YP_002284682.1 304372 D 565575 CDS YP_002284683.1 209554305 6983916 305201..305596 1 NC_011374.1 identified by match to protein family HMM PF00216; DNA-binding protein HU 305596 6983916 UUR10_0280 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA-binding protein HU YP_002284683.1 305201 D 565575 CDS YP_002284684.1 209554419 6983982 305736..307892 1 NC_011374.1 identified by match to protein family HMM PF01966; match to protein family HMM PF04607; match to protein family HMM TIGR00691; ppGpp 3'-pyrophosphohydrolase 307892 6983982 UUR10_0281 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ppGpp 3'-pyrophosphohydrolase YP_002284684.1 305736 D 565575 CDS YP_002284685.1 209554531 6984097 307892..309505 1 NC_011374.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 309505 pyrG 6984097 pyrG Ureaplasma urealyticum serovar 10 str. ATCC 33699 CTP synthetase YP_002284685.1 307892 D 565575 CDS YP_002284686.1 209554579 6984213 309509..310774 1 NC_011374.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 310774 hisS 6984213 hisS Ureaplasma urealyticum serovar 10 str. ATCC 33699 histidyl-tRNA synthetase YP_002284686.1 309509 D 565575 CDS YP_002284687.1 209554563 6984262 310778..312514 1 NC_011374.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 312514 aspS 6984262 aspS Ureaplasma urealyticum serovar 10 str. ATCC 33699 aspartyl-tRNA synthetase YP_002284687.1 310778 D 565575 CDS YP_002284688.1 209554549 6984246 312507..313343 1 NC_011374.1 hypothetical protein 313343 6984246 UUR10_0285 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284688.1 312507 D 565575 CDS YP_002284689.1 209554181 6984232 313396..313893 1 NC_011374.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 313893 msrA 6984232 msrA Ureaplasma urealyticum serovar 10 str. ATCC 33699 methionine sulfoxide reductase A YP_002284689.1 313396 D 565575 CDS YP_002284690.1 209554031 6983856 complement(313921..314520) 1 NC_011374.1 hypothetical protein 314520 6983856 UUR10_0287 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284690.1 313921 R 565575 CDS YP_002284691.1 209554233 6983706 complement(314528..315001) 1 NC_011374.1 identified by match to protein family HMM PF00255; glutathione peroxidase 315001 6983706 UUR10_0288 Ureaplasma urealyticum serovar 10 str. ATCC 33699 glutathione peroxidase YP_002284691.1 314528 R 565575 CDS YP_002284692.1 209554534 6983910 315250..325248 1 NC_011374.1 identified by match to protein family HMM PF00657; hypothetical protein 325248 6983910 UUR10_0289 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284692.1 315250 D 565575 CDS YP_002284693.1 209554165 6984216 325507..335637 1 NC_011374.1 identified by match to protein family HMM PF00657; hypothetical protein 335637 6984216 UUR10_0290 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284693.1 325507 D 565575 CDS YP_002284694.1 209554272 6983840 335791..336630 1 NC_011374.1 putative lipoprotein 336630 6983840 UUR10_0291 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284694.1 335791 D 565575 CDS YP_002284695.1 209554114 6983949 336644..337354 1 NC_011374.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 337354 6983949 UUR10_0292 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284695.1 336644 D 565575 CDS YP_002284696.1 209554279 6983789 337354..338061 1 NC_011374.1 hypothetical protein 338061 6983789 UUR10_0294 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284696.1 337354 D 565575 CDS YP_002284697.1 209554381 6983892 338714..339280 1 NC_011374.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 339280 efp 6983892 efp Ureaplasma urealyticum serovar 10 str. ATCC 33699 elongation factor P YP_002284697.1 338714 D 565575 CDS YP_002284698.1 209554441 6984059 339283..339585 1 NC_011374.1 hypothetical protein 339585 6984059 UUR10_0296 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284698.1 339283 D 565575 CDS YP_002284699.1 209554511 6984119 339588..339971 1 NC_011374.1 identified by match to protein family HMM TIGR01951; transcription antitermination factor NusB 339971 nusB 6984119 nusB Ureaplasma urealyticum serovar 10 str. ATCC 33699 transcription antitermination factor NusB YP_002284699.1 339588 D 565575 CDS YP_002284700.1 209554158 6984193 339979..340683 1 NC_011374.1 identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046; RNA methyltransferase, RsmE family 340683 6984193 UUR10_0298 Ureaplasma urealyticum serovar 10 str. ATCC 33699 RNA methyltransferase, RsmE family YP_002284700.1 339979 D 565575 CDS YP_002284701.1 209554102 6983833 340706..341665 1 NC_011374.1 hypothetical protein 341665 6983833 UUR10_0299 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284701.1 340706 D 565575 CDS YP_002284702.1 209554023 6984326 346933..347403 1 NC_011374.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 347403 greA 6984326 greA Ureaplasma urealyticum serovar 10 str. ATCC 33699 transcription elongation factor GreA YP_002284702.1 346933 D 565575 CDS YP_002284703.1 209554372 6984328 348079..348867 1 NC_011374.1 identified by match to protein family HMM PF05175; DNA methylase 348867 6984328 UUR10_0309 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA methylase YP_002284703.1 348079 D 565575 CDS YP_002284704.1 209554148 6984050 348869..349783 1 NC_011374.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 349783 6984050 UUR10_0310 Ureaplasma urealyticum serovar 10 str. ATCC 33699 endonuclease IV YP_002284704.1 348869 D 565575 CDS YP_002284705.1 209554539 6983823 complement(350085..351050) 1 NC_011374.1 hypothetical protein 351050 6983823 UUR10_0311 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284705.1 350085 R 565575 CDS YP_002284706.1 209554331 6984221 complement(351053..352198) 1 NC_011374.1 hypothetical protein 352198 6984221 UUR10_0312 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284706.1 351053 R 565575 CDS YP_002284707.1 209554056 6984008 352546..353106 1 NC_011374.1 hypothetical protein 353106 6984008 UUR10_0313 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284707.1 352546 D 565575 CDS YP_002284708.1 209554498 6983731 complement(353172..353426) 1 NC_011374.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 353426 rpsT 6983731 rpsT Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S20 YP_002284708.1 353172 R 565575 CDS YP_002284709.1 209554202 6984327 complement(354032..354472) 1 NC_011374.1 identified by match to protein family HMM PF00583; ribosomal protein-alanine-acetyltransferase 354472 6984327 UUR10_0316 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribosomal protein-alanine-acetyltransferase YP_002284709.1 354032 R 565575 CDS YP_002284710.1 209554365 6983878 complement(354450..355025) 1 NC_011374.1 identified by match to protein family HMM PF00814; glycoprotease family 355025 6983878 UUR10_0317 Ureaplasma urealyticum serovar 10 str. ATCC 33699 glycoprotease family YP_002284710.1 354450 R 565575 CDS YP_002284711.1 209554367 6984043 complement(355018..355917) 1 NC_011374.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA 355917 rluA 6984043 rluA Ureaplasma urealyticum serovar 10 str. ATCC 33699 RluA YP_002284711.1 355018 R 565575 CDS YP_002284712.1 209554246 6984045 complement(355920..356711) 1 NC_011374.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 356711 6984045 UUR10_0319 Ureaplasma urealyticum serovar 10 str. ATCC 33699 lipoprotein signal peptidase YP_002284712.1 355920 R 565575 CDS YP_002284713.1 209554209 6983923 complement(356711..357256) 1 NC_011374.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 357256 ppa 6983923 ppa Ureaplasma urealyticum serovar 10 str. ATCC 33699 inorganic pyrophosphatase YP_002284713.1 356711 R 565575 CDS YP_002284714.1 209554122 6983885 357416..357820 1 NC_011374.1 hypothetical protein 357820 6983885 UUR10_0321 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284714.1 357416 D 565575 CDS YP_002284715.1 209554078 6983797 357848..358411 1 NC_011374.1 hypothetical protein 358411 6983797 UUR10_0322 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284715.1 357848 D 565575 CDS YP_002284716.1 209554602 6983753 358494..363221 1 NC_011374.1 identified by match to protein family HMM PF02687; efflux ABC transporter, permease protein 363221 6983753 UUR10_0323 Ureaplasma urealyticum serovar 10 str. ATCC 33699 efflux ABC transporter, permease protein YP_002284716.1 358494 D 565575 CDS YP_002284717.1 209554499 6984285 363336..364712 1 NC_011374.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 364712 nusA 6984285 nusA Ureaplasma urealyticum serovar 10 str. ATCC 33699 transcription elongation factor NusA YP_002284717.1 363336 D 565575 CDS YP_002284718.1 209554422 6984181 364724..364975 1 NC_011374.1 identified by match to protein family HMM PF04296; hypothetical protein 364975 6984181 UUR10_0325 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284718.1 364724 D 565575 CDS YP_002284719.1 209554436 6984100 365014..366858 1 NC_011374.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 366858 infB 6984100 infB Ureaplasma urealyticum serovar 10 str. ATCC 33699 translation initiation factor IF-2 YP_002284719.1 365014 D 565575 CDS YP_002284720.1 209554588 6984114 366866..367216 1 NC_011374.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 367216 rbfA 6984114 rbfA Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribosome-binding factor A YP_002284720.1 366866 D 565575 CDS YP_002284721.1 209554573 6984271 367223..367633 1 NC_011374.1 hypothetical protein 367633 6984271 UUR10_0328 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284721.1 367223 D 565575 CDS YP_002284722.1 209554482 6984256 complement(367682..368764) 1 NC_011374.1 putative lipoprotein 368764 6984256 UUR10_0329 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284722.1 367682 R 565575 CDS YP_002284723.1 209554041 6984163 complement(368842..369537) 1 NC_011374.1 identified by match to protein family HMM PF01863; hypothetical protein 369537 6984163 UUR10_0330 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284723.1 368842 R 565575 CDS YP_002284724.1 209554291 6983716 complement(369550..371349) 1 NC_011374.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 371349 lepA 6983716 lepA Ureaplasma urealyticum serovar 10 str. ATCC 33699 GTP-binding protein LepA YP_002284724.1 369550 R 565575 CDS YP_002284725.1 209554228 6983968 complement(371468..372127) 1 NC_011374.1 identified by match to protein family HMM PF04011; LemA family 372127 6983968 UUR10_0332 Ureaplasma urealyticum serovar 10 str. ATCC 33699 LemA family YP_002284725.1 371468 R 565575 CDS YP_002284726.1 209554458 6983905 372276..372641 1 NC_011374.1 hypothetical protein 372641 6983905 UUR10_0333 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284726.1 372276 D 565575 CDS YP_002284727.1 209554556 6984138 372645..373418 1 NC_011374.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; rRNA methylase 373418 6984138 UUR10_0334 Ureaplasma urealyticum serovar 10 str. ATCC 33699 rRNA methylase YP_002284727.1 372645 D 565575 CDS YP_002284728.1 209554502 6984239 373429..374346 1 NC_011374.1 identified by match to protein family HMM PF06144; DNA polymerase III, delta subunit superfamily 374346 6984239 UUR10_0335 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA polymerase III, delta subunit superfamily YP_002284728.1 373429 D 565575 CDS YP_002284729.1 209554490 6984184 374504..375772 1 NC_011374.1 hypothetical protein 375772 6984184 UUR10_0336 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284729.1 374504 D 565575 CDS YP_002284730.1 209554321 6984171 375773..376756 1 NC_011374.1 hypothetical protein 376756 6984171 UUR10_0337 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284730.1 375773 D 565575 CDS YP_002284731.1 209554105 6983998 complement(376767..377069) 1 NC_011374.1 hypothetical protein 377069 6983998 UUR10_0338 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284731.1 376767 R 565575 CDS YP_002284732.1 209554622 6983780 complement(377098..377721) 1 NC_011374.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 377721 udk 6983780 udk Ureaplasma urealyticum serovar 10 str. ATCC 33699 uridine kinase YP_002284732.1 377098 R 565575 CDS YP_002284733.1 209554266 6984305 377904..378077 1 NC_011374.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 378077 rpmF 6984305 rpmF Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L32 YP_002284733.1 377904 D 565575 CDS YP_002284734.1 209554215 6983943 378087..378344 1 NC_011374.1 hypothetical protein 378344 6983943 UUR10_0341 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284734.1 378087 D 565575 CDS YP_002284735.1 209554302 6983891 378458..380623 1 NC_011374.1 hypothetical protein 380623 6983891 UUR10_0342 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284735.1 378458 D 565575 CDS YP_002284736.1 209554368 6983979 380644..381933 1 NC_011374.1 hypothetical protein 381933 6983979 UUR10_0343 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284736.1 380644 D 565575 CDS YP_002284737.1 209554469 6984046 381998..382804 1 NC_011374.1 identified by match to protein family HMM PF02882; methylenetetrahydrofolate dehydrogenase 382804 6984046 UUR10_0344 Ureaplasma urealyticum serovar 10 str. ATCC 33699 methylenetetrahydrofolate dehydrogenase YP_002284737.1 381998 D 565575 CDS YP_002284738.1 209554583 6984150 382876..384762 1 NC_011374.1 hypothetical protein 384762 6984150 UUR10_0345 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284738.1 382876 D 565575 CDS YP_002284739.1 209554478 6984266 384933..386735 1 NC_011374.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 386735 dnaK 6984266 dnaK Ureaplasma urealyticum serovar 10 str. ATCC 33699 molecular chaperone DnaK YP_002284739.1 384933 D 565575 CDS YP_002284740.1 209554604 6984159 386852..387961 1 NC_011374.1 identified by match to protein family HMM TIGR00481; conserved hypothetical protein TIGR00481 387961 6984159 UUR10_0347 Ureaplasma urealyticum serovar 10 str. ATCC 33699 conserved hypothetical protein TIGR00481 YP_002284740.1 386852 D 565575 CDS YP_002284741.1 209554350 6984287 388011..388580 1 NC_011374.1 hypothetical protein 388580 6984287 UUR10_0348 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284741.1 388011 D 565575 CDS YP_002284742.1 209554401 6984028 388584..389252 1 NC_011374.1 identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase 389252 cmk 6984028 cmk Ureaplasma urealyticum serovar 10 str. ATCC 33699 cytidylate kinase YP_002284742.1 388584 D 565575 CDS YP_002284743.1 209554369 6984079 389336..389620 1 NC_011374.1 hypothetical protein 389620 6984079 UUR10_0350 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284743.1 389336 D 565575 CDS YP_002284744.1 209554289 6984047 389674..390468 1 NC_011374.1 identified by match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 390468 6984047 UUR10_0351 Ureaplasma urealyticum serovar 10 str. ATCC 33699 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002284744.1 389674 D 565575 CDS YP_002284745.1 209554517 6983966 390613..391449 1 NC_011374.1 identified by match to protein family HMM PF02616; ScpA/B protein 391449 6983966 UUR10_0352 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ScpA/B protein YP_002284745.1 390613 D 565575 CDS YP_002284746.1 209554448 6984199 391481..392647 1 NC_011374.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B 392647 scpB 6984199 scpB Ureaplasma urealyticum serovar 10 str. ATCC 33699 segregation and condensation protein B YP_002284746.1 391481 D 565575 CDS YP_002284747.1 209554089 6984126 392741..394159 1 NC_011374.1 identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115; trigger factor 394159 tig 6984126 tig Ureaplasma urealyticum serovar 10 str. ATCC 33699 trigger factor YP_002284747.1 392741 D 565575 CDS YP_002284748.1 209554020 6983764 394261..396636 1 NC_011374.1 identified by match to protein family HMM PF00004; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 396636 lon 6983764 lon Ureaplasma urealyticum serovar 10 str. ATCC 33699 ATP-dependent protease La YP_002284748.1 394261 D 565575 CDS YP_002284749.1 209554143 6983694 396731..398077 1 NC_011374.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 398077 6983694 UUR10_0356 Ureaplasma urealyticum serovar 10 str. ATCC 33699 RNA polymerase sigma factor YP_002284749.1 396731 D 565575 CDS YP_002284750.1 209554405 6983818 398061..398726 1 NC_011374.1 identified by match to protein family HMM PF04816; hypothetical protein 398726 6983818 UUR10_0357 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284750.1 398061 D 565575 CDS YP_002284751.1 209554317 6984083 398707..399495 1 NC_011374.1 identified by match to protein family HMM PF01784; NIF3 family protein 399495 6984083 UUR10_0358 Ureaplasma urealyticum serovar 10 str. ATCC 33699 NIF3 family protein YP_002284751.1 398707 D 565575 CDS YP_002284752.1 209554630 6983994 complement(399548..399877) 1 NC_011374.1 hypothetical protein 399877 6983994 UUR10_0359 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284752.1 399548 R 565575 CDS YP_002284753.1 209554014 6984315 complement(400094..401122) 1 NC_011374.1 hypothetical protein 401122 6984315 UUR10_0360 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284753.1 400094 R 565575 CDS YP_002284754.1 209554082 6983688 401223..401912 1 NC_011374.1 identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 401912 truB 6983688 truB Ureaplasma urealyticum serovar 10 str. ATCC 33699 tRNA pseudouridine synthase B YP_002284754.1 401223 D 565575 CDS YP_002284755.1 209554240 6983757 401872..402723 1 NC_011374.1 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; riboflavin biosynthesis protein RibF homolog 402723 6983757 UUR10_0362 Ureaplasma urealyticum serovar 10 str. ATCC 33699 riboflavin biosynthesis protein RibF homolog YP_002284755.1 401872 D 565575 CDS YP_002284756.1 209554112 6983917 402865..404514 1 NC_011374.1 putative lipoprotein 404514 6983917 UUR10_0363 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284756.1 402865 D 565575 CDS YP_002284757.1 209554406 6983787 404592..405692 1 NC_011374.1 identified by match to protein family HMM PF01032; ferrichrome ABC transporter 405692 6983787 UUR10_0364 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ferrichrome ABC transporter YP_002284757.1 404592 D 565575 CDS YP_002284758.1 209554301 6984084 405795..407420 1 NC_011374.1 putative lipoprotein 407420 6984084 UUR10_0365 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284758.1 405795 D 565575 CDS YP_002284759.1 209554559 6983978 407435..408505 1 NC_011374.1 identified by match to protein family HMM PF01032; citrate-dependent iron transport, membrane-bound protein 408505 6983978 UUR10_0366 Ureaplasma urealyticum serovar 10 str. ATCC 33699 citrate-dependent iron transport, membrane-bound protein YP_002284759.1 407435 D 565575 CDS YP_002284760.1 209554297 6984242 408511..409614 1 NC_011374.1 identified by match to protein family HMM PF01032; ferrichrome ABC transporter 409614 6984242 UUR10_0367 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ferrichrome ABC transporter YP_002284760.1 408511 D 565575 CDS YP_002284761.1 209554463 6983974 409764..411398 1 NC_011374.1 putative ABC substrate-binding protein - iron 411398 6983974 UUR10_0368 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative ABC substrate-binding protein - iron YP_002284761.1 409764 D 565575 CDS YP_002284762.1 209554335 6984144 411491..413125 1 NC_011374.1 putative ABC substrate-binding protein - iron 413125 6984144 UUR10_0369 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative ABC substrate-binding protein - iron YP_002284762.1 411491 D 565575 CDS YP_002284763.1 209554577 6984012 413282..413806 1 NC_011374.1 putative lipoprotein 413806 6984012 UUR10_0370 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284763.1 413282 D 565575 CDS YP_002284764.1 209554497 6984260 complement(413848..415275) 1 NC_011374.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase (NAD) family protein 415275 6984260 UUR10_0371 Ureaplasma urealyticum serovar 10 str. ATCC 33699 aldehyde dehydrogenase (NAD) family protein YP_002284764.1 413848 R 565575 CDS YP_002284765.1 209554615 6984179 complement(415307..416296) 1 NC_011374.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 416296 asnA 6984179 asnA Ureaplasma urealyticum serovar 10 str. ATCC 33699 asparagine synthetase AsnA YP_002284765.1 415307 R 565575 CDS YP_002284766.1 209554536 6984298 complement(416274..416930) 1 NC_011374.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 416930 pgsA 6984298 pgsA Ureaplasma urealyticum serovar 10 str. ATCC 33699 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_002284766.1 416274 R 565575 CDS YP_002284767.1 209554140 6984218 complement(416911..418275) 1 NC_011374.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 418275 asnC 6984218 asnC Ureaplasma urealyticum serovar 10 str. ATCC 33699 asparaginyl-tRNA synthetase YP_002284767.1 416911 R 565575 CDS YP_002284768.1 209554247 6983815 complement(418369..418992) 1 NC_011374.1 hypothetical protein 418992 6983815 UUR10_0375 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284768.1 418369 R 565575 CDS YP_002284769.1 209554282 6983924 complement(419132..420649) 1 NC_011374.1 hypothetical protein 420649 6983924 UUR10_0376 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284769.1 419132 R 565575 CDS YP_002284770.1 209554373 6983959 420894..422195 1 NC_011374.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644; pyrimidine-nucleoside phosphorylase 422195 pdp 6983959 pdp Ureaplasma urealyticum serovar 10 str. ATCC 33699 pyrimidine-nucleoside phosphorylase YP_002284770.1 420894 D 565575 CDS YP_002284771.1 209554598 6984051 422226..424946 1 NC_011374.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 424946 alaS 6984051 alaS Ureaplasma urealyticum serovar 10 str. ATCC 33699 alanyl-tRNA synthetase YP_002284771.1 422226 D 565575 CDS YP_002284772.1 209554058 6984281 424939..425382 1 NC_011374.1 identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein 425382 6984281 UUR10_0379 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284772.1 424939 D 565575 CDS YP_002284773.1 209554437 6983733 425398..427818 1 NC_011374.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 427818 leuS 6983733 leuS Ureaplasma urealyticum serovar 10 str. ATCC 33699 leucyl-tRNA synthetase YP_002284773.1 425398 D 565575 CDS YP_002284774.1 209554503 6984115 428036..428428 1 NC_011374.1 hypothetical protein 428428 6984115 UUR10_0381 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284774.1 428036 D 565575 CDS YP_002284775.1 209554278 6984185 428444..428572 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 428572 6984185 UUR10_0382 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284775.1 428444 D 565575 CDS YP_002284776.1 209554360 6983955 429096..429356 1 NC_011374.1 hypothetical protein 429356 6983955 UUR10_0383 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284776.1 429096 D 565575 CDS YP_002284777.1 209554127 6984038 complement(429861..430466) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 430466 6984038 UUR10_0384 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284777.1 429861 R 565575 CDS YP_002284778.1 209554164 6983802 430963..431406 1 NC_011374.1 hypothetical protein 431406 6983802 UUR10_0385 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284778.1 430963 D 565575 CDS YP_002284779.1 209554611 6983839 431763..433208 1 NC_011374.1 identified by match to protein family HMM PF03237; match to protein family HMM TIGR01547; phage terminase, large subunit, pbsx family 433208 6983839 UUR10_0386 Ureaplasma urealyticum serovar 10 str. ATCC 33699 phage terminase, large subunit, pbsx family YP_002284779.1 431763 D 565575 CDS YP_002284780.1 209554310 6984294 433198..434562 1 NC_011374.1 hypothetical protein 434562 6984294 UUR10_0387 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284780.1 433198 D 565575 CDS YP_002284781.1 209554329 6983987 434555..438037 1 NC_011374.1 hypothetical protein 438037 6983987 UUR10_0388 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284781.1 434555 D 565575 CDS YP_002284782.1 209554236 6984006 438048..438416 1 NC_011374.1 hypothetical protein 438416 6984006 UUR10_0389 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284782.1 438048 D 565575 CDS YP_002284783.1 209554528 6983913 438419..438745 1 NC_011374.1 hypothetical protein 438745 6983913 UUR10_0390 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284783.1 438419 D 565575 CDS YP_002284784.1 209554423 6984210 438761..439948 1 NC_011374.1 hypothetical protein 439948 6984210 UUR10_0391 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284784.1 438761 D 565575 CDS YP_002284785.1 209554049 6984101 440109..440786 1 NC_011374.1 identified by similarity to GB:AAF30569.1; hypothetical protein 440786 6984101 UUR10_0392 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284785.1 440109 D 565575 CDS YP_002284786.1 209554632 6983724 440786..443029 1 NC_011374.1 hypothetical protein 443029 6983724 UUR10_0393 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284786.1 440786 D 565575 CDS YP_002284787.1 209554001 6984317 443467..444015 1 NC_011374.1 hypothetical protein 444015 6984317 UUR10_0394 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284787.1 443467 D 565575 CDS YP_002284788.1 209554142 6983676 443984..444427 1 NC_011374.1 hypothetical protein 444427 6983676 UUR10_0395 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284788.1 443984 D 565575 CDS YP_002284789.1 209554216 6983817 complement(445311..445988) 1 NC_011374.1 hypothetical protein 445988 6983817 UUR10_0396 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284789.1 445311 R 565575 CDS YP_002284790.1 209554015 6983893 complement(445970..446431) 1 NC_011374.1 hypothetical protein 446431 6983893 UUR10_0397 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284790.1 445970 R 565575 CDS YP_002284791.1 209554053 6983689 complement(446421..447110) 1 NC_011374.1 hypothetical protein 447110 6983689 UUR10_0398 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284791.1 446421 R 565575 CDS YP_002284792.1 209554316 6983728 complement(447100..447756) 1 NC_011374.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913; phage recombination protein Bet 447756 bet 6983728 bet Ureaplasma urealyticum serovar 10 str. ATCC 33699 phage recombination protein Bet YP_002284792.1 447100 R 565575 CDS YP_002284793.1 209554220 6983993 complement(447756..448091) 1 NC_011374.1 hypothetical protein 448091 6983993 UUR10_0400 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284793.1 447756 R 565575 CDS YP_002284794.1 209554464 6983897 complement(448081..448317) 1 NC_011374.1 hypothetical protein 448317 6983897 UUR10_0401 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284794.1 448081 R 565575 CDS YP_002284795.1 209554457 6984145 complement(448310..448492) 1 NC_011374.1 hypothetical protein 448492 6984145 UUR10_0402 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284795.1 448310 R 565575 CDS YP_002284796.1 209554378 6984136 complement(448449..448685) 1 NC_011374.1 hypothetical protein 448685 6984136 UUR10_0403 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284796.1 448449 R 565575 CDS YP_002284797.1 209554146 6984056 complement(448692..448988) 1 NC_011374.1 hypothetical protein 448988 6984056 UUR10_0404 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284797.1 448692 R 565575 CDS YP_002284798.1 209554513 6983821 complement(448994..449335) 1 NC_011374.1 hypothetical protein 449335 6983821 UUR10_0405 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284798.1 448994 R 565575 CDS YP_002284799.1 209554042 6984195 complement(449337..449510) 1 NC_011374.1 hypothetical protein 449510 6984195 UUR10_0406 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284799.1 449337 R 565575 CDS YP_002284800.1 209554485 6983717 complement(449494..450120) 1 NC_011374.1 hypothetical protein 450120 6983717 UUR10_0407 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284800.1 449494 R 565575 CDS YP_002284801.1 209554523 6984166 complement(450110..450877) 1 NC_011374.1 identified by match to protein family HMM PF00589; integrase-recombinase protein 450877 6984166 UUR10_0408 Ureaplasma urealyticum serovar 10 str. ATCC 33699 integrase-recombinase protein YP_002284801.1 450110 R 565575 CDS YP_002284802.1 209554343 6984205 complement(451043..451171) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 451171 6984205 UUR10_0409 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284802.1 451043 R 565575 CDS YP_002284803.1 209554413 6984020 complement(451264..451761) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 451761 6984020 UUR10_0410 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284803.1 451264 R 565575 CDS YP_002284804.1 209554153 6984091 complement(451743..451937) 1 NC_011374.1 putative lipoprotein 451937 6984091 UUR10_0411 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284804.1 451743 R 565575 CDS YP_002284805.1 209554208 6983828 complement(452110..453036) 1 NC_011374.1 hypothetical protein 453036 6983828 UUR10_0412 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284805.1 452110 R 565575 CDS YP_002284806.1 209554452 6983884 complement(453112..453834) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 453834 6983884 UUR10_0413 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284806.1 453112 R 565575 CDS YP_002284807.1 209554358 6984131 complement(454152..455189) 1 NC_011374.1 hypothetical protein 455189 6984131 UUR10_0414 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284807.1 454152 R 565575 CDS YP_002284808.1 209554608 6984036 complement(455388..456659) 1 NC_011374.1 multiple banded antigen 456659 6984036 UUR10_0415 Ureaplasma urealyticum serovar 10 str. ATCC 33699 multiple banded antigen YP_002284808.1 455388 R 565575 CDS YP_002284809.1 209554616 6984291 457049..458116 1 NC_011374.1 multiple banded antigen 458116 6984291 UUR10_0416 Ureaplasma urealyticum serovar 10 str. ATCC 33699 multiple banded antigen YP_002284809.1 457049 D 565575 CDS YP_002284810.1 209554570 6984299 458180..459661 1 NC_011374.1 hypothetical protein 459661 6984299 UUR10_0417 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284810.1 458180 D 565575 CDS YP_002284811.1 209554198 6984253 459757..460833 1 NC_011374.1 multiple banded antigen 460833 6984253 UUR10_0418 Ureaplasma urealyticum serovar 10 str. ATCC 33699 multiple banded antigen YP_002284811.1 459757 D 565575 CDS YP_002284812.1 209554098 6983874 460941..462329 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 462329 6983874 UUR10_0419 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284812.1 460941 D 565575 CDS YP_002284813.1 209554353 6983773 462620..466948 1 NC_011374.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 466948 polC 6983773 polC Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA polymerase III PolC YP_002284813.1 462620 D 565575 CDS YP_002284814.1 209554450 6984031 467062..468702 1 NC_011374.1 putative lipoprotein 468702 6984031 UUR10_0421 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284814.1 467062 D 565575 CDS YP_002284815.1 209554172 6984128 complement(468778..469581) 1 NC_011374.1 hypothetical protein 469581 6984128 UUR10_0422 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284815.1 468778 R 565575 CDS YP_002284816.1 209554356 6983847 complement(469581..470087) 1 NC_011374.1 identified by match to protein family HMM PF02525; hypothetical protein 470087 6983847 UUR10_0423 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284816.1 469581 R 565575 CDS YP_002284817.1 209554512 6984034 complement(470231..471985) 1 NC_011374.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 471985 uvrC 6984034 uvrC Ureaplasma urealyticum serovar 10 str. ATCC 33699 excinuclease ABC subunit C YP_002284817.1 470231 R 565575 CDS YP_002284818.1 209554471 6984194 complement(471985..472959) 1 NC_011374.1 identified by match to protein family HMM PF01210; match to protein family HMM PF07479; NAD+ dependent glycerol-3-phosphate dehydrogenase 472959 6984194 UUR10_0425 Ureaplasma urealyticum serovar 10 str. ATCC 33699 NAD+ dependent glycerol-3-phosphate dehydrogenase YP_002284818.1 471985 R 565575 CDS YP_002284819.1 209554037 6984152 complement(472969..474297) 1 NC_011374.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 474297 engA 6984152 engA Ureaplasma urealyticum serovar 10 str. ATCC 33699 GTP-binding protein EngA YP_002284819.1 472969 R 565575 CDS YP_002284820.1 209554230 6983712 474437..475534 1 NC_011374.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein 475534 6983712 UUR10_0427 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ComEC/Rec2 family protein YP_002284820.1 474437 D 565575 CDS YP_002284821.1 209554586 6983907 475611..476048 1 NC_011374.1 identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242; MraZ protein 476048 mraZ 6983907 mraZ Ureaplasma urealyticum serovar 10 str. ATCC 33699 MraZ protein YP_002284821.1 475611 D 565575 CDS YP_002284822.1 209554330 6984269 476038..476964 1 NC_011374.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 476964 mraW 6984269 mraW Ureaplasma urealyticum serovar 10 str. ATCC 33699 S-adenosyl-methyltransferase MraW YP_002284822.1 476038 D 565575 CDS YP_002284823.1 209554059 6984007 476982..478166 1 NC_011374.1 hypothetical protein 478166 6984007 UUR10_0430 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284823.1 476982 D 565575 CDS YP_002284824.1 209554139 6983734 478326..479201 1 NC_011374.1 identified by match to protein family HMM PF07751; hypothetical protein 479201 6983734 UUR10_0431 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284824.1 478326 D 565575 CDS YP_002284825.1 209554174 6983814 479207..483064 1 NC_011374.1 viral phosphatase 483064 6983814 UUR10_0432 Ureaplasma urealyticum serovar 10 str. ATCC 33699 viral phosphatase YP_002284825.1 479207 D 565575 CDS YP_002284826.1 209554251 6983849 483093..483905 1 NC_011374.1 hypothetical protein 483905 6983849 UUR10_0433 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284826.1 483093 D 565575 CDS YP_002284827.1 209554597 6983928 484028..486142 1 NC_011374.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; chaperone protein ClpB 486142 6983928 UUR10_0434 Ureaplasma urealyticum serovar 10 str. ATCC 33699 chaperone protein ClpB YP_002284827.1 484028 D 565575 CDS YP_002284828.1 209554518 6984280 486295..488079 1 NC_011374.1 hypothetical protein 488079 6984280 UUR10_0435 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284828.1 486295 D 565575 CDS YP_002284829.1 209554166 6984200 complement(488087..488443) 1 NC_011374.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 488443 acpS 6984200 acpS Ureaplasma urealyticum serovar 10 str. ATCC 33699 4'-phosphopantetheinyl transferase YP_002284829.1 488087 R 565575 CDS YP_002284830.1 209554376 6983841 complement(488447..488746) 1 NC_011374.1 hypothetical protein 488746 6983841 UUR10_0437 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284830.1 488447 R 565575 CDS YP_002284831.1 209554283 6984054 complement(488791..489015) 1 NC_011374.1 hypothetical protein 489015 6984054 UUR10_0438 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284831.1 488791 R 565575 CDS YP_002284832.1 209554206 6983960 complement(489059..489337) 1 NC_011374.1 hypothetical protein 489337 6983960 UUR10_0439 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284832.1 489059 R 565575 CDS YP_002284833.1 209554110 6983882 complement(489391..490344) 1 NC_011374.1 identified by match to protein family HMM PF01351; ribonuclease HIII 490344 rnhC 6983882 rnhC Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribonuclease HIII YP_002284833.1 489391 R 565575 CDS YP_002284834.1 209554504 6983785 490449..491054 1 NC_011374.1 hypothetical protein 491054 6983785 UUR10_0441 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284834.1 490449 D 565575 CDS YP_002284835.1 209554612 6984186 complement(491153..492199) 1 NC_011374.1 identified by match to protein family HMM PF01032; hemin permease 492199 6984186 UUR10_0442 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hemin permease YP_002284835.1 491153 R 565575 CDS YP_002284836.1 209554591 6984295 complement(492209..493090) 1 NC_011374.1 identified by match to protein family HMM PF01032; ferrichrome ABC transporter 493090 6984295 UUR10_0443 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ferrichrome ABC transporter YP_002284836.1 492209 R 565575 CDS YP_002284837.1 209554120 6984274 complement(493244..494692) 1 NC_011374.1 putative ABC substrate-binding protein - iron 494692 6984274 UUR10_0444 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative ABC substrate-binding protein - iron YP_002284837.1 493244 R 565575 CDS YP_002284838.1 209554475 6983795 complement(494815..495957) 1 NC_011374.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 495957 mnmA 6983795 mnmA Ureaplasma urealyticum serovar 10 str. ATCC 33699 tRNA-specific 2-thiouridylase MnmA YP_002284838.1 494815 R 565575 CDS YP_002284839.1 209554433 6984156 496071..496967 1 NC_011374.1 hypothetical protein 496967 6984156 UUR10_0446 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284839.1 496071 D 565575 CDS YP_002284840.1 209554325 6984111 complement(497174..497971) 1 NC_011374.1 integrase-recombinase protein 497971 6984111 UUR10_0447 Ureaplasma urealyticum serovar 10 str. ATCC 33699 integrase-recombinase protein YP_002284840.1 497174 R 565575 CDS YP_002284841.1 209554408 6984002 complement(498058..498816) 1 NC_011374.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; membrane protein 498816 6984002 UUR10_0448 Ureaplasma urealyticum serovar 10 str. ATCC 33699 membrane protein YP_002284841.1 498058 R 565575 CDS YP_002284842.1 209554125 6984086 499027..500223 1 NC_011374.1 hypothetical protein 500223 6984086 UUR10_0449 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284842.1 499027 D 565575 CDS YP_002284843.1 209554195 6983800 complement(500308..500964) 1 NC_011374.1 identified by match to protein family HMM PF01025; co-chaperone GrpE 500964 grpE 6983800 grpE Ureaplasma urealyticum serovar 10 str. ATCC 33699 co-chaperone GrpE YP_002284843.1 500308 R 565575 CDS YP_002284844.1 209554560 6983871 complement(500964..502091) 1 NC_011374.1 identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349; chaperone protein DnaJ 502091 dnaJ 6983871 dnaJ Ureaplasma urealyticum serovar 10 str. ATCC 33699 chaperone protein DnaJ YP_002284844.1 500964 R 565575 CDS YP_002284845.1 209553996 6984243 complement(502224..502694) 1 NC_011374.1 hypothetical protein 502694 6984243 UUR10_0452 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284845.1 502224 R 565575 CDS YP_002284846.1 209554567 6983671 complement(502675..503595) 1 NC_011374.1 hypothetical protein 503595 6983671 UUR10_0453 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284846.1 502675 R 565575 CDS YP_002284847.1 209554454 6984250 503745..506447 1 NC_011374.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 506447 ileS 6984250 ileS Ureaplasma urealyticum serovar 10 str. ATCC 33699 isoleucyl-tRNA synthetase YP_002284847.1 503745 D 565575 CDS YP_002284848.1 209554260 6984133 506451..507413 1 NC_011374.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 507413 6984133 UUR10_0455 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative DNA-binding/iron metalloprotein/AP endonuclease YP_002284848.1 506451 D 565575 CDS YP_002284849.1 209554349 6983937 507434..508564 1 NC_011374.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 508564 metK 6983937 metK Ureaplasma urealyticum serovar 10 str. ATCC 33699 S-adenosylmethionine synthetase YP_002284849.1 507434 D 565575 CDS YP_002284850.1 209554312 6984346 complement(508759..509592) 1 NC_011374.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 509592 mutM 6984346 mutM Ureaplasma urealyticum serovar 10 str. ATCC 33699 formamidopyrimidine-DNA glycosylase YP_002284850.1 508759 R 565575 CDS YP_002284851.1 209554047 6983989 complement(509629..510498) 1 NC_011374.1 identified by match to protein family HMM PF01367; match to protein family HMM PF02739; Exo 510498 exo 6983989 exo Ureaplasma urealyticum serovar 10 str. ATCC 33699 Exo YP_002284851.1 509629 R 565575 CDS YP_002284852.1 209554072 6983722 complement(510502..513411) 1 NC_011374.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand; in the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 513411 dnaE 6983722 dnaE Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA polymerase III DnaE YP_002284852.1 510502 R 565575 CDS YP_002284853.1 209554510 6983747 complement(513411..513623) 1 NC_011374.1 hypothetical protein 513623 6983747 UUR10_0461 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284853.1 513411 R 565575 CDS YP_002284854.1 209554609 6984192 complement(513710..514675) 1 NC_011374.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein 514675 6984192 UUR10_0462 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DHH family protein YP_002284854.1 513710 R 565575 CDS YP_002284855.1 209554375 6984292 complement(514686..515864) 1 NC_011374.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 515864 thiI 6984292 thiI Ureaplasma urealyticum serovar 10 str. ATCC 33699 thiamine biosynthesis protein ThiI YP_002284855.1 514686 R 565575 CDS YP_002284856.1 209554245 6984053 complement(515842..516708) 1 NC_011374.1 hypothetical protein 516708 6984053 UUR10_0464 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284856.1 515842 R 565575 CDS YP_002284857.1 209554167 6983922 516831..517559 1 NC_011374.1 hypothetical protein 517559 6983922 UUR10_0465 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284857.1 516831 D 565575 CDS YP_002284858.1 209554180 6983842 517563..518636 1 NC_011374.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 518636 hrcA 6983842 hrcA Ureaplasma urealyticum serovar 10 str. ATCC 33699 heat-inducible transcription repressor YP_002284858.1 517563 D 565575 CDS YP_002284859.1 209554431 6983855 518626..519144 1 NC_011374.1 hypothetical protein 519144 6983855 UUR10_0467 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284859.1 518626 D 565575 CDS YP_002284860.1 209554197 6984109 519160..519870 1 NC_011374.1 identified by match to protein family HMM PF04167; hypothetical protein 519870 6984109 UUR10_0468 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284860.1 519160 D 565575 CDS YP_002284861.1 209554108 6983873 519863..520630 1 NC_011374.1 hypothetical protein 520630 6983873 UUR10_0469 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284861.1 519863 D 565575 CDS YP_002284862.1 209554587 6983783 520790..522526 1 NC_011374.1 lipoprotein 522526 6983783 UUR10_0470 Ureaplasma urealyticum serovar 10 str. ATCC 33699 lipoprotein YP_002284862.1 520790 D 565575 CDS YP_002284863.1 209554501 6984270 complement(522846..523049) 1 NC_011374.1 hypothetical protein 523049 6984270 UUR10_0471 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284863.1 522846 R 565575 CDS YP_002284864.1 209554529 6984183 complement(523353..523865) 1 NC_011374.1 identified by match to protein family HMM PF00210; urease 523865 6984183 UUR10_0472 Ureaplasma urealyticum serovar 10 str. ATCC 33699 urease YP_002284864.1 523353 R 565575 CDS YP_002284865.1 209554456 6984211 complement(523988..524851) 1 NC_011374.1 identified by match to protein family HMM PF01774; urease accessory protein UreD 524851 ureD 6984211 ureD Ureaplasma urealyticum serovar 10 str. ATCC 33699 urease accessory protein UreD YP_002284865.1 523988 R 565575 CDS YP_002284866.1 209554382 6984135 complement(524861..525481) 1 NC_011374.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101; urease accessory protein UreG 525481 ureG 6984135 ureG Ureaplasma urealyticum serovar 10 str. ATCC 33699 urease accessory protein UreG YP_002284866.1 524861 R 565575 CDS YP_002284867.1 209554292 6984060 complement(525558..526265) 1 NC_011374.1 identified by match to protein family HMM PF01730; urease accessory protein UreF 526265 6984060 UUR10_0475 Ureaplasma urealyticum serovar 10 str. ATCC 33699 urease accessory protein UreF YP_002284867.1 525558 R 565575 CDS YP_002284868.1 209554123 6983969 complement(526252..526701) 1 NC_011374.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 526701 6983969 UUR10_0476 Ureaplasma urealyticum serovar 10 str. ATCC 33699 urease accessory protein UreE YP_002284868.1 526252 R 565575 CDS YP_002284869.1 209554177 6983798 complement(526768..528564) 1 NC_011374.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 528564 ureC 6983798 ureC Ureaplasma urealyticum serovar 10 str. ATCC 33699 urease subunit alpha YP_002284869.1 526768 R 565575 CDS YP_002284870.1 209554211 6983852 complement(528603..528977) 1 NC_011374.1 identified by match to protein family HMM PF00699; match to protein family HMM TIGR00192; urease, beta subunit 528977 ureB 6983852 ureB Ureaplasma urealyticum serovar 10 str. ATCC 33699 urease, beta subunit YP_002284870.1 528603 R 565575 CDS YP_002284871.1 209554420 6983887 complement(529029..529334) 1 NC_011374.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 529334 ureA 6983887 ureA Ureaplasma urealyticum serovar 10 str. ATCC 33699 urease subunit gamma YP_002284871.1 529029 R 565575 CDS YP_002284872.1 209554071 6984098 529664..530815 1 NC_011374.1 identified by match to protein family HMM PF00005; ferrichrome transport ATP-binding protein 530815 6984098 UUR10_0480 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ferrichrome transport ATP-binding protein YP_002284872.1 529664 D 565575 CDS YP_002284873.1 209554296 6983746 530945..531688 1 NC_011374.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J 531688 rrmJ 6983746 rrmJ Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribosomal RNA large subunit methyltransferase J YP_002284873.1 530945 D 565575 CDS YP_002284874.1 209554138 6983973 531678..532760 1 NC_011374.1 identified by match to protein family HMM PF00817; DNA polymerase family protein 532760 6983973 UUR10_0483 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA polymerase family protein YP_002284874.1 531678 D 565575 CDS YP_002284875.1 209554525 6983813 complement(532749..533687) 1 NC_011374.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 533687 ruvB 6983813 ruvB Ureaplasma urealyticum serovar 10 str. ATCC 33699 Holliday junction DNA helicase RuvB YP_002284875.1 532749 R 565575 CDS YP_002284876.1 209554366 6984207 complement(533677..534264) 1 NC_011374.1 identified by match to protein family HMM PF07499; holliday junction ATP-dependent DNA helicase RuvA 534264 6984207 UUR10_0484 Ureaplasma urealyticum serovar 10 str. ATCC 33699 holliday junction ATP-dependent DNA helicase RuvA YP_002284876.1 533677 R 565575 CDS YP_002284877.1 209554617 6984044 complement(534300..535475) 1 NC_011374.1 hypothetical protein 535475 6984044 UUR10_0485 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284877.1 534300 R 565575 CDS YP_002284878.1 209554048 6984300 complement(535579..536583) 1 NC_011374.1 hypothetical protein 536583 6984300 UUR10_0486 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284878.1 535579 R 565575 CDS YP_002284879.1 209554280 6983723 complement(536688..538106) 1 NC_011374.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 538106 proS 6983723 proS Ureaplasma urealyticum serovar 10 str. ATCC 33699 prolyl-tRNA synthetase YP_002284879.1 536688 R 565575 CDS YP_002284880.1 209554191 6983957 complement(538164..538613) 1 NC_011374.1 identified by match to protein family HMM PF01592; SUF system FeS assembly protein, NifU family 538613 6983957 UUR10_0488 Ureaplasma urealyticum serovar 10 str. ATCC 33699 SUF system FeS assembly protein, NifU family YP_002284880.1 538164 R 565575 CDS YP_002284881.1 209554308 6983866 complement(538600..539808) 1 NC_011374.1 identified by match to protein family HMM PF00266; probable cysteine desulfurase 539808 6983866 UUR10_0489 Ureaplasma urealyticum serovar 10 str. ATCC 33699 probable cysteine desulfurase YP_002284881.1 538600 R 565575 CDS YP_002284882.1 209554210 6983985 540021..543407 1 NC_011374.1 putative lipoprotein 543407 6983985 UUR10_0490 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284882.1 540021 D 565575 CDS YP_002284883.1 209554009 6983886 543407..544066 1 NC_011374.1 identified by match to protein family HMM PF00834; D-ribulose-5-phosphate 3 epimerase 544066 6983886 UUR10_0491 Ureaplasma urealyticum serovar 10 str. ATCC 33699 D-ribulose-5-phosphate 3 epimerase YP_002284883.1 543407 D 565575 CDS YP_002284884.1 209554008 6983683 complement(544335..545171) 1 NC_011374.1 transposase 545171 6983683 UUR10_0492 Ureaplasma urealyticum serovar 10 str. ATCC 33699 transposase YP_002284884.1 544335 R 565575 CDS YP_002284885.1 209554599 6983682 complement(545210..545953) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 545953 6983682 UUR10_0493 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284885.1 545210 R 565575 CDS YP_002284886.1 209554594 6984282 complement(545958..546491) 1 NC_011374.1 transposase 546491 6984282 UUR10_0494 Ureaplasma urealyticum serovar 10 str. ATCC 33699 transposase YP_002284886.1 545958 R 565575 CDS YP_002284887.1 209554552 6984277 complement(546591..547208) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 547208 6984277 UUR10_0496 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284887.1 546591 R 565575 CDS YP_002284888.1 209554453 6984235 complement(547183..547857) 1 NC_011374.1 hypothetical protein 547857 6984235 UUR10_0497 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284888.1 547183 R 565575 CDS YP_002284889.1 209554076 6984132 complement(547919..548602) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 548602 6984132 UUR10_0498 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284889.1 547919 R 565575 CDS YP_002284890.1 209553999 6983751 complement(548829..551096) 1 NC_011374.1 identified by similarity to GB:CAE77662.1; hypothetical protein 551096 6983751 UUR10_0499 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284890.1 548829 R 565575 CDS YP_002284891.1 209554574 6983674 complement(551089..552144) 1 NC_011374.1 identified by match to protein family HMM PF00004; AAA family ATPase 552144 6983674 UUR10_0500 Ureaplasma urealyticum serovar 10 str. ATCC 33699 AAA family ATPase YP_002284891.1 551089 R 565575 CDS YP_002284892.1 209554347 6984257 complement(552285..554603) 1 NC_011374.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 554603 pheT 6984257 pheT Ureaplasma urealyticum serovar 10 str. ATCC 33699 phenylalanyl-tRNA synthetase subunit beta YP_002284892.1 552285 R 565575 CDS YP_002284893.1 209554440 6984024 complement(554636..555637) 1 NC_011374.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 555637 pheS 6984024 pheS Ureaplasma urealyticum serovar 10 str. ATCC 33699 phenylalanyl-tRNA synthetase subunit alpha YP_002284893.1 554636 R 565575 CDS YP_002284894.1 209554194 6984118 complement(555644..556111) 1 NC_011374.1 hypothetical protein 556111 6984118 UUR10_0503 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284894.1 555644 R 565575 CDS YP_002284895.1 209554252 6983870 complement(556104..556871) 1 NC_011374.1 identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase 556871 nadE 6983870 nadE Ureaplasma urealyticum serovar 10 str. ATCC 33699 NAD+ synthetase YP_002284895.1 556104 R 565575 CDS YP_002284896.1 209554030 6983929 complement(556879..558186) 1 NC_011374.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 558186 obgE 6983929 obgE Ureaplasma urealyticum serovar 10 str. ATCC 33699 GTPase ObgE YP_002284896.1 556879 R 565575 CDS YP_002284897.1 209554000 6983705 complement(558189..558890) 1 NC_011374.1 hypothetical protein 558890 6983705 UUR10_0506 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284897.1 558189 R 565575 CDS YP_002284898.1 209554267 6983675 558895..559044 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 559044 6983675 UUR10_0507 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284898.1 558895 D 565575 CDS YP_002284899.1 209554203 6983944 complement(559058..559975) 1 NC_011374.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 559975 fmt 6983944 fmt Ureaplasma urealyticum serovar 10 str. ATCC 33699 methionyl-tRNA formyltransferase YP_002284899.1 559058 R 565575 CDS YP_002284900.1 209554285 6983879 complement(560050..560775) 1 NC_011374.1 hypothetical protein 560775 6983879 UUR10_0509 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284900.1 560050 R 565575 CDS YP_002284901.1 209554070 6983962 561028..561624 1 NC_011374.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 561624 def 6983962 def Ureaplasma urealyticum serovar 10 str. ATCC 33699 peptide deformylase YP_002284901.1 561028 D 565575 CDS YP_002284902.1 209554161 6984312 563563..566130 1 NC_011374.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01061; DNA topoisomerase IV, A subunit family protein 566130 6984312 UUR10_0514 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA topoisomerase IV, A subunit family protein YP_002284902.1 563563 D 565575 CDS YP_002284903.1 209554394 6984137 567263..567457 1 NC_011374.1 hypothetical protein 567457 6984137 UUR10_0517 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284903.1 567263 D 565575 CDS YP_002284904.1 209554589 6984072 567908..568093 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 568093 6984072 UUR10_0518 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284904.1 567908 D 565575 CDS YP_002284905.1 209554262 6984272 568209..568448 1 NC_011374.1 hypothetical protein 568448 6984272 UUR10_0519 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284905.1 568209 D 565575 CDS YP_002284906.1 209554024 6983939 complement(568499..597808) 1 NC_011374.1 identified by match to protein family HMM PF07198; hypothetical protein 597808 6983939 UUR10_0520 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284906.1 568499 R 565575 CDS YP_002284907.1 209554385 6983699 598411..598578 1 NC_011374.1 MTA/SAH nucleosidase 598578 6983699 UUR10_0521 Ureaplasma urealyticum serovar 10 str. ATCC 33699 MTA/SAH nucleosidase YP_002284907.1 598411 D 565575 CDS YP_002284908.1 209554459 6984063 598719..599315 1 NC_011374.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 599315 def 6984063 def Ureaplasma urealyticum serovar 10 str. ATCC 33699 peptide deformylase YP_002284908.1 598719 D 565575 CDS YP_002284909.1 209554526 6984139 599322..601250 1 NC_011374.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 601250 parE 6984139 parE Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA topoisomerase IV subunit B YP_002284909.1 599322 D 565575 CDS YP_002284910.1 209554590 6984208 601256..603814 1 NC_011374.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01061; DNA topoisomerase IV, A subunit 603814 parC 6984208 parC Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA topoisomerase IV, A subunit YP_002284910.1 601256 D 565575 CDS YP_002284911.1 209554067 6984273 603814..604899 1 NC_011374.1 identified by match to protein family HMM TIGR03597; ribosome biogenesis GTPase YqeH 604899 yqeH 6984273 yqeH Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribosome biogenesis GTPase YqeH YP_002284911.1 603814 D 565575 CDS YP_002284912.1 209554134 6983742 604927..606105 1 NC_011374.1 catalyzes the reversible adenylation of nicotinate mononucleotide to nicotinic acid adenine dinucleotide; putative nicotinate-nucleotide adenylyltransferase 606105 nadD 6983742 nadD Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative nicotinate-nucleotide adenylyltransferase YP_002284912.1 604927 D 565575 CDS YP_002284913.1 209554484 6983809 606115..606807 1 NC_011374.1 identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704; MTA/SAH nucleosidase 606807 mtnN 6983809 mtnN Ureaplasma urealyticum serovar 10 str. ATCC 33699 MTA/SAH nucleosidase YP_002284913.1 606115 D 565575 CDS YP_002284914.1 209554044 6984165 606915..607166 1 NC_011374.1 hypothetical protein 607166 6984165 UUR10_0528 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284914.1 606915 D 565575 CDS YP_002284915.1 209554154 6983719 607471..609798 1 NC_011374.1 identified by match to protein family HMM PF07198; hypothetical protein 609798 6983719 UUR10_0529 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284915.1 607471 D 565575 CDS YP_002284916.1 209554190 6984025 complement(613870..615714) 1 NC_011374.1 putative lipoprotein 615714 6984025 UUR10_0532 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284916.1 613870 R 565575 CDS YP_002284917.1 209554434 6983865 complement(615870..618347) 1 NC_011374.1 identified by match to protein family HMM PF04851; type III restriction enzyme, res subunit family 618347 6983865 UUR10_0533 Ureaplasma urealyticum serovar 10 str. ATCC 33699 type III restriction enzyme, res subunit family YP_002284917.1 615870 R 565575 CDS YP_002284918.1 209554388 6984112 complement(618353..619435) 1 NC_011374.1 identified by match to protein family HMM PF01555; DNA methylase 619435 6984112 UUR10_0534 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA methylase YP_002284918.1 618353 R 565575 CDS YP_002284919.1 209554605 6984066 complement(619564..619938) 1 NC_011374.1 type III restriction-modification system: methylase 619938 6984066 UUR10_0535 Ureaplasma urealyticum serovar 10 str. ATCC 33699 type III restriction-modification system: methylase YP_002284919.1 619564 R 565575 CDS YP_002284920.1 209554537 6984231 623481..625100 1 NC_011374.1 identified by match to protein family HMM PF02608; hypothetical protein 625100 6984231 UUR10_0538 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284920.1 623481 D 565575 CDS YP_002284921.1 209554610 6984219 complement(625432..642696) 1 NC_011374.1 identified by match to protein family HMM PF07198; hypothetical protein 642696 6984219 UUR10_0539 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284921.1 625432 R 565575 CDS YP_002284922.1 209554362 6984293 complement(642923..646234) 1 NC_011374.1 putative lipoprotein 646234 6984293 UUR10_0540 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284922.1 642923 R 565575 CDS YP_002284923.1 209554468 6984040 646509..647669 1 NC_011374.1 identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016; acetate kinase 647669 ackA 6984040 ackA Ureaplasma urealyticum serovar 10 str. ATCC 33699 acetate kinase YP_002284923.1 646509 D 565575 CDS YP_002284924.1 209554204 6984149 complement(647673..649790) 1 NC_011374.1 putative lipoprotein 649790 6984149 UUR10_0542 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284924.1 647673 R 565575 CDS YP_002284925.1 209554274 6983880 complement(649975..651285) 1 NC_011374.1 identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 651285 6983880 UUR10_0543 Ureaplasma urealyticum serovar 10 str. ATCC 33699 endonuclease/exonuclease/phosphatase family protein YP_002284925.1 649975 R 565575 CDS YP_002284926.1 209554118 6983951 complement(651433..654174) 1 NC_011374.1 putative lipoprotein 654174 6983951 UUR10_0544 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284926.1 651433 R 565575 CDS YP_002284927.1 209554084 6983793 complement(654391..654912) 1 NC_011374.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 654912 apt_1 6983793 apt_1 Ureaplasma urealyticum serovar 10 str. ATCC 33699 adenine phosphoribosyltransferase YP_002284927.1 654391 R 565575 CDS YP_002284928.1 209554613 6983759 complement(654933..655709) 1 NC_011374.1 hypothetical protein 655709 6983759 UUR10_0546 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284928.1 654933 R 565575 CDS YP_002284929.1 209554035 6984296 655856..656200 1 NC_011374.1 identified by match to protein family HMM PF03129; glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) 656200 6984296 UUR10_0547 Ureaplasma urealyticum serovar 10 str. ATCC 33699 glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) YP_002284929.1 655856 D 565575 CDS YP_002284930.1 209554481 6983869 complement(658181..675592) 1 NC_011374.1 identified by match to protein family HMM PF00041; match to protein family HMM PF07198; fibronectin repeat protein 675592 6983869 UUR10_0551 Ureaplasma urealyticum serovar 10 str. ATCC 33699 fibronectin repeat protein YP_002284930.1 658181 R 565575 CDS YP_002284931.1 209554351 6984162 675804..676940 1 NC_011374.1 hypothetical protein 676940 6984162 UUR10_0552 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284931.1 675804 D 565575 CDS YP_002284932.1 209554243 6984029 complement(677441..677572) 1 NC_011374.1 transposase, mutator type 677572 6984029 UUR10_0553 Ureaplasma urealyticum serovar 10 str. ATCC 33699 transposase, mutator type YP_002284932.1 677441 R 565575 CDS YP_002284933.1 209554201 6983920 complement(678185..678895) 1 NC_011374.1 hypothetical protein 678895 6983920 UUR10_0554 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284933.1 678185 R 565575 CDS YP_002284934.1 209554238 6983695 complement(681531..682052) 1 NC_011374.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 682052 apt_2 6983695 apt_2 Ureaplasma urealyticum serovar 10 str. ATCC 33699 adenine phosphoribosyltransferase YP_002284934.1 681531 R 565575 CDS YP_002284935.1 209554012 6983915 complement(682073..685096) 1 NC_011374.1 hypothetical protein 685096 6983915 UUR10_0559 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284935.1 682073 R 565575 CDS YP_002284936.1 209554095 6983686 685310..686059 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 686059 6983686 UUR10_0560 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284936.1 685310 D 565575 CDS YP_002284937.1 209554156 6983770 686129..686596 1 NC_011374.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; conserved hypothetical protein TIGR00043 686596 6983770 UUR10_0561 Ureaplasma urealyticum serovar 10 str. ATCC 33699 conserved hypothetical protein TIGR00043 YP_002284937.1 686129 D 565575 CDS YP_002284938.1 209554232 6983831 686589..687491 1 NC_011374.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 687491 era 6983831 era Ureaplasma urealyticum serovar 10 str. ATCC 33699 GTP-binding protein Era YP_002284938.1 686589 D 565575 CDS YP_002284939.1 209554391 6983909 687491..688207 1 NC_011374.1 identified by match to protein family HMM TIGR00613; DNA repair protein RecO 688207 recO 6983909 recO Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA repair protein RecO YP_002284939.1 687491 D 565575 CDS YP_002284940.1 209554580 6984069 688243..689664 1 NC_011374.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 689664 glyS 6984069 glyS Ureaplasma urealyticum serovar 10 str. ATCC 33699 glycyl-tRNA synthetase YP_002284940.1 688243 D 565575 CDS YP_002284941.1 209554496 6984263 689652..691598 1 NC_011374.1 identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391; DNA primase 691598 6984263 UUR10_0565 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA primase YP_002284941.1 689652 D 565575 CDS YP_002284942.1 209554088 6984178 complement(691657..692265) 1 NC_011374.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 692265 rpsD 6984178 rpsD Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S4 YP_002284942.1 691657 R 565575 CDS YP_002284943.1 209553998 6983763 692536..694227 1 NC_011374.1 hypothetical protein 694227 6983763 UUR10_0567 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284943.1 692536 D 565575 CDS YP_002284944.1 209553989 6984339 complement(695341..696132) 1 NC_011374.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein 696132 6984339 UUR10_0576 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284944.1 695341 R 565575 CDS YP_002284945.1 209554036 6983664 complement(696136..698367) 1 NC_011374.1 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA 698367 6983664 UUR10_0577 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ATP-dependent DNA helicase PcrA YP_002284945.1 696136 R 565575 CDS YP_002284946.1 209554073 6983711 complement(698392..699213) 1 NC_011374.1 hypothetical protein 699213 6983711 UUR10_0578 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284946.1 698392 R 565575 CDS YP_002284947.1 209554489 6983748 complement(699214..700152) 1 NC_011374.1 identified by match to protein family HMM PF00535; glycosyltransferase 700152 6983748 UUR10_0579 Ureaplasma urealyticum serovar 10 str. ATCC 33699 glycosyltransferase YP_002284947.1 699214 R 565575 CDS YP_002284948.1 209554569 6984351 700575..700778 1 NC_011374.1 hypothetical protein 700778 6984351 UUR10_0582 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284948.1 700575 D 565575 CDS YP_002284949.1 209554439 6984252 700768..701907 1 NC_011374.1 hypothetical protein 701907 6984252 UUR10_0583 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284949.1 700768 D 565575 CDS YP_002284950.1 209554307 6984117 701930..702871 1 NC_011374.1 hypothetical protein 702871 6984117 UUR10_0584 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284950.1 701930 D 565575 CDS YP_002284951.1 209554492 6983984 702887..703120 1 NC_011374.1 identified by match to protein family HMM PF00550; acyl carrier protein 703120 6983984 UUR10_0585 Ureaplasma urealyticum serovar 10 str. ATCC 33699 acyl carrier protein YP_002284951.1 702887 D 565575 CDS YP_002284952.1 209554428 6984329 703778..704737 1 NC_011374.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 704737 dcm 6984329 dcm Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA-cytosine methyltransferase YP_002284952.1 703778 D 565575 CDS YP_002284953.1 209554115 6984106 complement(704769..705329) 1 NC_011374.1 type II site-specific deoxyribonuclease 705329 6984106 UUR10_0588 Ureaplasma urealyticum serovar 10 str. ATCC 33699 type II site-specific deoxyribonuclease YP_002284953.1 704769 R 565575 CDS YP_002284954.1 209554384 6983790 complement(705827..707194) 1 NC_011374.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 707194 6983790 UUR10_0589 Ureaplasma urealyticum serovar 10 str. ATCC 33699 leucyl aminopeptidase YP_002284954.1 705827 R 565575 CDS YP_002284955.1 209554061 6984062 complement(707291..709621) 1 NC_011374.1 identified by match to protein family HMM PF01580; cell division protein 709621 6984062 UUR10_0590 Ureaplasma urealyticum serovar 10 str. ATCC 33699 cell division protein YP_002284955.1 707291 R 565575 CDS YP_002284956.1 209554147 6983736 complement(709641..711323) 1 NC_011374.1 hypothetical protein 711323 6983736 UUR10_0591 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284956.1 709641 R 565575 CDS YP_002284957.1 209554188 6983822 711468..713438 1 NC_011374.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03412; ABC Transporter 713438 6983822 UUR10_0592 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ABC Transporter YP_002284957.1 711468 D 565575 CDS YP_002284958.1 209554254 6983863 713467..713778 1 NC_011374.1 hypothetical protein 713778 6983863 UUR10_0594 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284958.1 713467 D 565575 CDS YP_002284959.1 209554263 6983931 complement(713768..714913) 1 NC_011374.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 714913 cdsA 6983931 cdsA Ureaplasma urealyticum serovar 10 str. ATCC 33699 phosphatidate cytidylyltransferase YP_002284959.1 713768 R 565575 CDS YP_002284960.1 209554340 6983940 complement(714924..715475) 1 NC_011374.1 identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor 715475 frr 6983940 frr Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribosome recycling factor YP_002284960.1 714924 R 565575 CDS YP_002284961.1 209554472 6984017 complement(715493..716200) 1 NC_011374.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075; UMP kinase 716200 pyrH 6984017 pyrH Ureaplasma urealyticum serovar 10 str. ATCC 33699 UMP kinase YP_002284961.1 715493 R 565575 CDS YP_002284962.1 209554470 6984153 complement(716291..717166) 1 NC_011374.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 717166 tsf 6984153 tsf Ureaplasma urealyticum serovar 10 str. ATCC 33699 elongation factor Ts YP_002284962.1 716291 R 565575 CDS YP_002284963.1 209554625 6984330 718100..719158 1 NC_011374.1 identified by match to protein family HMM PF01032; hypothetical ferrichrome ABC transporter 719158 6984330 UUR10_0602 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical ferrichrome ABC transporter YP_002284963.1 718100 D 565575 CDS YP_002284964.1 209554412 6984308 719160..720185 1 NC_011374.1 identified by match to protein family HMM PF01032; ferric anguibactin transport system permerase protein 720185 6984308 UUR10_0603 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ferric anguibactin transport system permerase protein YP_002284964.1 719160 D 565575 CDS YP_002284965.1 209554151 6984090 720225..721847 1 NC_011374.1 putative ABC substrate-binding protein - iron 721847 6984090 UUR10_0604 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative ABC substrate-binding protein - iron YP_002284965.1 720225 D 565575 CDS YP_002284966.1 209554396 6983826 721929..722147 1 NC_011374.1 hypothetical protein 722147 6983826 UUR10_0605 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284966.1 721929 D 565575 CDS YP_002284967.1 209554545 6984141 complement(723289..726708) 1 NC_011374.1 identified by similarity to GB:ACA32698.1; match to protein family HMM PF07198; hypothetical protein 726708 6984141 UUR10_0607 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284967.1 723289 R 565575 CDS YP_002284968.1 209554547 6984227 complement(726993..728780) 1 NC_011374.1 hypothetical protein 728780 6984227 UUR10_0608 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284968.1 726993 R 565575 CDS YP_002284969.1 209554603 6984229 complement(728878..730680) 1 NC_011374.1 hypothetical protein 730680 6984229 UUR10_0609 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284969.1 728878 R 565575 CDS YP_002284970.1 209554097 6984286 complement(730755..732581) 1 NC_011374.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase F 732581 pepF_2 6984286 pepF_2 Ureaplasma urealyticum serovar 10 str. ATCC 33699 oligoendopeptidase F YP_002284970.1 730755 R 565575 CDS YP_002284971.1 209554179 6983772 complement(732678..733862) 1 NC_011374.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 733862 tuf 6983772 tuf Ureaplasma urealyticum serovar 10 str. ATCC 33699 elongation factor Tu YP_002284971.1 732678 R 565575 CDS YP_002284972.1 209554189 6983854 complement(733999..736065) 1 NC_011374.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 736065 fusA 6983854 fusA Ureaplasma urealyticum serovar 10 str. ATCC 33699 elongation factor G YP_002284972.1 733999 R 565575 CDS YP_002284973.1 209554344 6983864 complement(736092..736559) 1 NC_011374.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 736559 rpsG 6983864 rpsG Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S7 YP_002284973.1 736092 R 565575 CDS YP_002284974.1 209554010 6984021 complement(736589..737014) 1 NC_011374.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 737014 rpsL 6984021 rpsL Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S12 YP_002284974.1 736589 R 565575 CDS YP_002284975.1 209554121 6983684 complement(737198..738718) 1 NC_011374.1 identified by match to protein family HMM PF03767; 5'-nucleotidase, lipoprotein e 738718 6983684 UUR10_0615 Ureaplasma urealyticum serovar 10 str. ATCC 33699 5'-nucleotidase, lipoprotein e YP_002284975.1 737198 R 565575 CDS YP_002284976.1 209554514 6983796 complement(739004..739153) 1 NC_011374.1 hypothetical protein 739153 6983796 UUR10_0616 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284976.1 739004 R 565575 CDS YP_002284977.1 209554623 6984196 complement(739420..739896) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 739896 6984196 UUR10_0617 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284977.1 739420 R 565575 CDS YP_002284978.1 209554256 6984310 complement(741951..743609) 1 NC_011374.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; phosphoglucomutase/phosphomannomutase family protein 743609 6984310 UUR10_0621 Ureaplasma urealyticum serovar 10 str. ATCC 33699 phosphoglucomutase/phosphomannomutase family protein YP_002284978.1 741951 R 565575 CDS YP_002284979.1 209554522 6983933 complement(743640..744035) 1 NC_011374.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354; cytidine deaminase 744035 cdd 6983933 cdd Ureaplasma urealyticum serovar 10 str. ATCC 33699 cytidine deaminase YP_002284979.1 743640 R 565575 CDS YP_002284980.1 209554182 6984350 complement(744255..745328) 1 NC_011374.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321; peptidase/creatianse family protein 745328 6984350 UUR10_0624 Ureaplasma urealyticum serovar 10 str. ATCC 33699 peptidase/creatianse family protein YP_002284980.1 744255 R 565575 CDS YP_002284981.1 209554057 6983857 complement(745339..745500) 1 NC_011374.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 745500 rpmG 6983857 rpmG Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L33 YP_002284981.1 745339 R 565575 CDS YP_002284982.1 209554092 6983732 complement(745561..747303) 1 NC_011374.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 747303 thrS 6983732 thrS Ureaplasma urealyticum serovar 10 str. ATCC 33699 threonyl-tRNA synthetase YP_002284982.1 745561 R 565575 CDS YP_002284983.1 209554306 6983767 747460..748356 1 NC_011374.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; EDD domain protein, DegV family 748356 6983767 UUR10_0628 Ureaplasma urealyticum serovar 10 str. ATCC 33699 EDD domain protein, DegV family YP_002284983.1 747460 D 565575 CDS YP_002284984.1 209554225 6983983 complement(748353..749078) 1 NC_011374.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 749078 truA 6983983 truA Ureaplasma urealyticum serovar 10 str. ATCC 33699 tRNA pseudouridine synthase A YP_002284984.1 748353 R 565575 CDS YP_002284985.1 209554345 6983902 complement(749140..750456) 1 NC_011374.1 identified by match to protein family HMM PF02361; cobalt transport protein 750456 6983902 UUR10_0629 Ureaplasma urealyticum serovar 10 str. ATCC 33699 cobalt transport protein YP_002284985.1 749140 R 565575 CDS YP_002284986.1 209554224 6984022 complement(750457..751758) 1 NC_011374.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 751758 cbiO 6984022 cbiO Ureaplasma urealyticum serovar 10 str. ATCC 33699 cobalt transporter ATP-binding subunit YP_002284986.1 750457 R 565575 CDS YP_002284987.1 209554495 6983901 complement(751746..752630) 1 NC_011374.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 752630 cbiO 6983901 cbiO Ureaplasma urealyticum serovar 10 str. ATCC 33699 cobalt transporter ATP-binding subunit YP_002284987.1 751746 R 565575 CDS YP_002284988.1 209554581 6984176 complement(752773..753462) 1 NC_011374.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 753462 rplA 6984176 rplA Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L1 YP_002284988.1 752773 R 565575 CDS YP_002284989.1 209554483 6984264 complement(753465..753917) 1 NC_011374.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 753917 rplK 6984264 rplK Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L11 YP_002284989.1 753465 R 565575 CDS YP_002284990.1 209554026 6984164 754192..760983 1 NC_011374.1 identified by match to protein family HMM PF02687; efflux ABC transporter, permease protein 760983 6984164 UUR10_0634 Ureaplasma urealyticum serovar 10 str. ATCC 33699 efflux ABC transporter, permease protein YP_002284990.1 754192 D 565575 CDS YP_002284991.1 209554532 6983701 complement(761184..762617) 1 NC_011374.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 762617 gatB 6983701 gatB Ureaplasma urealyticum serovar 10 str. ATCC 33699 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_002284991.1 761184 R 565575 CDS YP_002284992.1 209554383 6984214 complement(762620..764053) 1 NC_011374.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 764053 gatA 6984214 gatA Ureaplasma urealyticum serovar 10 str. ATCC 33699 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_002284992.1 762620 R 565575 CDS YP_002284993.1 209554271 6984061 complement(764043..764327) 1 NC_011374.1 hypothetical protein 764327 6984061 UUR10_0637 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284993.1 764043 R 565575 CDS YP_002284994.1 209554446 6983948 complement(764349..765377) 1 NC_011374.1 in some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; hypothetical protein 765377 6983948 UUR10_0638 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002284994.1 764349 R 565575 CDS YP_002284995.1 209554544 6984124 complement(765404..766042) 1 NC_011374.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 766042 ung 6984124 ung Ureaplasma urealyticum serovar 10 str. ATCC 33699 uracil-DNA glycosylase YP_002284995.1 765404 R 565575 CDS YP_002284996.1 209554079 6984226 complement(766021..767787) 1 NC_011374.1 putative lipoprotein 767787 6984226 UUR10_0640 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002284996.1 766021 R 565575 CDS YP_002284997.1 209554126 6983754 complement(767790..769250) 1 NC_011374.1 identified by match to protein family HMM PF03796; replicative DNA helicase 769250 6983754 UUR10_0641 Ureaplasma urealyticum serovar 10 str. ATCC 33699 replicative DNA helicase YP_002284997.1 767790 R 565575 CDS YP_002284998.1 209554516 6983801 complement(769257..769694) 1 NC_011374.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 769694 rplI 6983801 rplI Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L9 YP_002284998.1 769257 R 565575 CDS YP_002284999.1 209554606 6984198 complement(769779..770018) 1 NC_011374.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 770018 rpsR 6984198 rpsR Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S18 YP_002284999.1 769779 R 565575 CDS YP_002285000.1 209554187 6984289 complement(770027..770533) 1 NC_011374.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 770533 ssb 6984289 ssb Ureaplasma urealyticum serovar 10 str. ATCC 33699 single-strand binding protein YP_002285000.1 770027 R 565575 CDS YP_002285001.1 209554099 6983862 complement(770579..771061) 1 NC_011374.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 771061 rpsF 6983862 rpsF Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S6 YP_002285001.1 770579 R 565575 CDS YP_002285002.1 209554003 6983774 771235..771744 1 NC_011374.1 identified by match to protein family HMM PF00583; acetyltransferase, gnat family 771744 6983774 UUR10_0646 Ureaplasma urealyticum serovar 10 str. ATCC 33699 acetyltransferase, gnat family YP_002285002.1 771235 D 565575 CDS YP_002285003.1 209554170 6983678 complement(772370..774199) 1 NC_011374.1 putative lipoprotein 774199 6983678 UUR10_0649 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002285003.1 772370 R 565575 CDS YP_002285004.1 209554294 6983845 complement(774219..775241) 1 NC_011374.1 hypothetical protein 775241 6983845 UUR10_0650 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285004.1 774219 R 565575 CDS YP_002285005.1 209554438 6983971 complement(775250..776731) 1 NC_011374.1 hypothetical protein 776731 6983971 UUR10_0651 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285005.1 775250 R 565575 CDS YP_002285006.1 209554505 6984116 complement(777108..777599) 1 NC_011374.1 hypothetical protein 777599 6984116 UUR10_0652 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285006.1 777108 R 565575 CDS YP_002285007.1 209554028 6984187 complement(777608..781000) 1 NC_011374.1 identified by match to protein family HMM PF00496; extracellular solute-binding protein 781000 6984187 UUR10_0653 Ureaplasma urealyticum serovar 10 str. ATCC 33699 extracellular solute-binding protein YP_002285007.1 777608 R 565575 CDS YP_002285008.1 209554145 6983703 complement(781019..786691) 1 NC_011374.1 hypothetical protein 786691 6983703 UUR10_0654 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285008.1 781019 R 565575 CDS YP_002285009.1 209554561 6983820 complement(786710..788029) 1 NC_011374.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; oligopeptide transport system permease protein 788029 6983820 UUR10_0655 Ureaplasma urealyticum serovar 10 str. ATCC 33699 oligopeptide transport system permease protein YP_002285009.1 786710 R 565575 CDS YP_002285010.1 209554479 6984244 complement(788047..789612) 1 NC_011374.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport system permease protein 789612 6984244 UUR10_0656 Ureaplasma urealyticum serovar 10 str. ATCC 33699 oligopeptide transport system permease protein YP_002285010.1 788047 R 565575 CDS YP_002285011.1 209554631 6984160 complement(789616..790614) 1 NC_011374.1 identified by match to protein family HMM PF00528; oligopeptide transport system permease protein 790614 6984160 UUR10_0657 Ureaplasma urealyticum serovar 10 str. ATCC 33699 oligopeptide transport system permease protein YP_002285011.1 789616 R 565575 CDS YP_002285012.1 209554414 6984316 complement(790619..791764) 1 NC_011374.1 identified by match to protein family HMM PF00528; oligopeptide transport system permease protein 791764 6984316 UUR10_0658 Ureaplasma urealyticum serovar 10 str. ATCC 33699 oligopeptide transport system permease protein YP_002285012.1 790619 R 565575 CDS YP_002285013.1 209554348 6984092 complement(791780..792220) 1 NC_011374.1 hypothetical protein 792220 6984092 UUR10_0659 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285013.1 791780 R 565575 CDS YP_002285014.1 209554234 6984026 complement(792246..793442) 1 NC_011374.1 putative lipoprotein 793442 6984026 UUR10_0660 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002285014.1 792246 R 565575 CDS YP_002285015.1 209554029 6983911 complement(793506..793685) 1 NC_011374.1 hypothetical protein 793685 6983911 UUR10_0661 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285015.1 793506 R 565575 CDS YP_002285016.1 209554131 6983704 complement(793953..795437) 1 NC_011374.1 identified by match to protein family HMM PF02588; hypothetical protein 795437 6983704 UUR10_0662 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285016.1 793953 R 565575 CDS YP_002285017.1 209554487 6983806 complement(795571..795942) 1 NC_011374.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 795942 rplS 6983806 rplS Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L19 YP_002285017.1 795571 R 565575 CDS YP_002285018.1 209554633 6984168 complement(795953..796639) 1 NC_011374.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 796639 trmD 6984168 trmD Ureaplasma urealyticum serovar 10 str. ATCC 33699 tRNA (guanine-N(1)-)-methyltransferase YP_002285018.1 795953 R 565575 CDS YP_002285019.1 209554491 6984318 complement(796652..796957) 1 NC_011374.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 796957 rpsP 6984318 rpsP Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S16 YP_002285019.1 796652 R 565575 CDS YP_002285020.1 209554427 6984172 complement(797045..797878) 1 NC_011374.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein 797878 6984172 UUR10_0666 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285020.1 797045 R 565575 CDS YP_002285021.1 209554051 6984105 complement(797912..799702) 1 NC_011374.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase domain protein 799702 6984105 UUR10_0667 Ureaplasma urealyticum serovar 10 str. ATCC 33699 metallo-beta-lactamase domain protein YP_002285021.1 797912 R 565575 CDS YP_002285022.1 209554300 6983726 complement(799862..801439) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 801439 6983726 UUR10_0668 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285022.1 799862 R 565575 CDS YP_002285023.1 209554248 6983977 complement(801842..802816) 1 NC_011374.1 hypothetical protein 802816 6983977 UUR10_0669 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285023.1 801842 R 565575 CDS YP_002285024.1 209554025 6983925 complement(803041..804312) 1 NC_011374.1 putative lipoprotein 804312 6983925 UUR10_0670 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative lipoprotein YP_002285024.1 803041 R 565575 CDS YP_002285025.1 209554460 6983700 complement(804688..808791) 1 NC_011374.1 viral phosphatase 808791 6983700 UUR10_0671 Ureaplasma urealyticum serovar 10 str. ATCC 33699 viral phosphatase YP_002285025.1 804688 R 565575 CDS YP_002285026.1 209554218 6984140 808988..810724 1 NC_011374.1 hypothetical protein 810724 6984140 UUR10_0672 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285026.1 808988 D 565575 CDS YP_002285027.1 209554320 6983895 810810..812096 1 NC_011374.1 identified by match to protein family HMM PF07885; potassium channel protein 812096 6983895 UUR10_0673 Ureaplasma urealyticum serovar 10 str. ATCC 33699 potassium channel protein YP_002285027.1 810810 D 565575 CDS YP_002285028.1 209554543 6983997 complement(812134..813048) 1 NC_011374.1 hypothetical protein 813048 6983997 UUR10_0674 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285028.1 812134 R 565575 CDS YP_002285029.1 209554585 6984225 complement(813057..814010) 1 NC_011374.1 hypothetical protein 814010 6984225 UUR10_0675 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285029.1 813057 R 565575 CDS YP_002285030.1 209554002 6984268 complement(814081..814482) 1 NC_011374.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 814482 rpsI 6984268 rpsI Ureaplasma urealyticum serovar 10 str. ATCC 33699 30S ribosomal protein S9 YP_002285030.1 814081 R 565575 CDS YP_002285031.1 209554217 6983677 complement(814502..814948) 1 NC_011374.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 814948 rplM 6983677 rplM Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L13 YP_002285031.1 814502 R 565575 CDS YP_002285032.1 209554336 6984177 complement(816952..832023) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 832023 6984177 UUR10_0680 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285032.1 816952 R 565575 CDS YP_002285033.1 209554019 6984013 complement(832010..846406) 1 NC_011374.1 identified by glimmer; putative; hypothetical protein 846406 6984013 UUR10_0681 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285033.1 832010 R 565575 CDS YP_002285034.1 209554553 6983693 846708..848297 1 NC_011374.1 identified by match to protein family HMM PF00324; amino acid transporter protein 848297 6983693 UUR10_0683 Ureaplasma urealyticum serovar 10 str. ATCC 33699 amino acid transporter protein YP_002285034.1 846708 D 565575 CDS YP_002285035.1 209554277 6984236 848477..848977 1 NC_011374.1 identified by match to protein family HMM TIGR00964; preprotein translocase, SecE subunit family 848977 6984236 UUR10_0684 Ureaplasma urealyticum serovar 10 str. ATCC 33699 preprotein translocase, SecE subunit family YP_002285035.1 848477 D 565575 CDS YP_002285036.1 209554214 6983954 849003..849776 1 NC_011374.1 identified by match to protein family HMM PF02357; match to protein family HMM TIGR01956; NusG family protein 849776 6983954 UUR10_0685 Ureaplasma urealyticum serovar 10 str. ATCC 33699 NusG family protein YP_002285036.1 849003 D 565575 CDS YP_002285037.1 209554212 6983890 complement(850480..851817) 1 NC_011374.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase 851817 6983890 UUR10_0686 Ureaplasma urealyticum serovar 10 str. ATCC 33699 ATP-dependent RNA helicase YP_002285037.1 850480 R 565575 CDS YP_002285038.1 209554176 6983888 complement(851807..853429) 1 NC_011374.1 identified by match to protein family HMM PF01554; DNA damage inducible protein - mate transporter family 853429 6983888 UUR10_0687 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA damage inducible protein - mate transporter family YP_002285038.1 851807 R 565575 CDS YP_002285039.1 209554100 6983851 complement(853896..855461) 1 NC_011374.1 identified by match to protein family HMM PF01554; DNA damage inducible protein - mate transporter family 855461 6983851 UUR10_0688 Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA damage inducible protein - mate transporter family YP_002285039.1 853896 R 565575 CDS YP_002285040.1 209554016 6983775 complement(855628..856275) 1 NC_011374.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 856275 deoC 6983775 deoC Ureaplasma urealyticum serovar 10 str. ATCC 33699 deoxyribose-phosphate aldolase YP_002285040.1 855628 R 565575 CDS YP_002285041.1 209554596 6983690 complement(856288..858252) 1 NC_011374.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 858252 tkt 6983690 tkt Ureaplasma urealyticum serovar 10 str. ATCC 33699 transketolase YP_002285041.1 856288 R 565575 CDS YP_002285042.1 209554527 6984279 complement(858295..858558) 1 NC_011374.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphohistidinoprotein-hexose phosphotransferase 858558 6984279 UUR10_0691 Ureaplasma urealyticum serovar 10 str. ATCC 33699 phosphohistidinoprotein-hexose phosphotransferase YP_002285042.1 858295 R 565575 CDS YP_002285043.1 209554535 6984209 complement(858661..860259) 1 NC_011374.1 identified by match to protein family HMM PF00614; cardiolipin synthase 860259 6984209 UUR10_0692 Ureaplasma urealyticum serovar 10 str. ATCC 33699 cardiolipin synthase YP_002285043.1 858661 R 565575 CDS YP_002285044.1 209554592 6984348 complement(860575..860895) 1 NC_011374.1 identified by match to protein family HMM PF00085; match to protein family HMM PF05768; thioredoxin 860895 6984348 UUR10_0694 Ureaplasma urealyticum serovar 10 str. ATCC 33699 thioredoxin YP_002285044.1 860575 R 565575 CDS YP_002285045.1 209554326 6984275 complement(860923..862959) 1 NC_011374.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 862959 topA 6984275 topA Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA topoisomerase I YP_002285045.1 860923 R 565575 CDS YP_002285046.1 209554435 6984003 complement(863032..863742) 1 NC_011374.1 hypothetical protein 863742 6984003 UUR10_0696 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285046.1 863032 R 565575 CDS YP_002285047.1 209554629 6984113 complement(863794..864618) 1 NC_011374.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR03596; ribosome biogenesis GTP-binding protein YlqF 864618 ylqF 6984113 ylqF Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribosome biogenesis GTP-binding protein YlqF YP_002285047.1 863794 R 565575 CDS YP_002285048.1 209554069 6984314 complement(864630..865070) 1 NC_011374.1 hypothetical protein 865070 6984314 UUR10_0698 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285048.1 864630 R 565575 CDS YP_002285049.1 209554193 6983744 complement(865108..865779) 1 NC_011374.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 865779 tdk 6983744 tdk Ureaplasma urealyticum serovar 10 str. ATCC 33699 thymidine kinase YP_002285049.1 865108 R 565575 CDS YP_002285050.1 209554109 6983868 complement(865786..866892) 1 NC_011374.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 866892 ychF 6983868 ychF Ureaplasma urealyticum serovar 10 str. ATCC 33699 GTP-dependent nucleic acid-binding protein EngD YP_002285050.1 865786 R 565575 CDS YP_002285051.1 209554395 6983784 complement(866909..867778) 1 NC_011374.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase, class II 867778 fba 6983784 fba Ureaplasma urealyticum serovar 10 str. ATCC 33699 fructose-1,6-bisphosphate aldolase, class II YP_002285051.1 866909 R 565575 CDS YP_002285052.1 209554409 6984073 complement(867781..868263) 1 NC_011374.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 868263 rpoE 6984073 rpoE Ureaplasma urealyticum serovar 10 str. ATCC 33699 DNA-directed RNA polymerase subunit delta YP_002285052.1 867781 R 565575 CDS YP_002285053.1 209554507 6984087 complement(868314..869531) 1 NC_011374.1 identified by match to protein family HMM PF01966; HD domain protein 869531 6984087 UUR10_0703 Ureaplasma urealyticum serovar 10 str. ATCC 33699 HD domain protein YP_002285053.1 868314 R 565575 CDS YP_002285054.1 209554403 6984189 complement(869539..870987) 1 NC_011374.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 870987 gltX 6984189 gltX Ureaplasma urealyticum serovar 10 str. ATCC 33699 glutamyl-tRNA synthetase YP_002285054.1 869539 R 565575 CDS YP_002285055.1 209554027 6984081 complement(870977..871774) 1 NC_011374.1 identified by match to protein family HMM PF00288; hypothetical protein 871774 6984081 UUR10_0705 Ureaplasma urealyticum serovar 10 str. ATCC 33699 hypothetical protein YP_002285055.1 870977 R 565575 CDS YP_002285056.1 209554601 6983702 complement(871796..872641) 1 NC_011374.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 872641 ksgA 6983702 ksgA Ureaplasma urealyticum serovar 10 str. ATCC 33699 dimethyladenosine transferase YP_002285056.1 871796 R 565575 CDS YP_002285057.1 209554229 6984284 complement(872643..873794) 1 NC_011374.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 873794 6984284 UUR10_0707 Ureaplasma urealyticum serovar 10 str. ATCC 33699 putative inner membrane protein translocase component YidC YP_002285057.1 872643 R 565575 CDS YP_002285058.1 209554287 6983906 complement(873814..874170) 1 NC_011374.1 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 874170 rnpA 6983906 rnpA Ureaplasma urealyticum serovar 10 str. ATCC 33699 ribonuclease P protein component YP_002285058.1 873814 R 565575 CDS YP_002285059.1 209554007 6983964 complement(874176..874322) 1 NC_011374.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 874322 rpmH 6983964 rpmH Ureaplasma urealyticum serovar 10 str. ATCC 33699 50S ribosomal protein L34 YP_002285059.1 874176 R 565575 CDS