-- dump date 20111121_015448 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 565575000001 SEQ_END SEQ_END NC_011374.1 874478 874478 DR NC_011374.1; contig end 874478..874478 Ureaplasma urealyticum serovar 10 str. ATCC 33699 YP_002284414.1 CDS dnaA NC_011374.1 17 1390 D identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 17..1390 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984355 YP_002284415.1 CDS rpmE NC_011374.1 1528 1815 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1528..1815 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984161 YP_002284416.1 CDS prfA NC_011374.1 1957 3036 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1957..3036 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984122 YP_002284417.1 CDS UUR10_0004 NC_011374.1 3036 3908 D identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; methyltransferase, HemK family 3036..3908 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984039 YP_002284418.1 CDS UUR10_0005 NC_011374.1 3895 4455 D Sua5/YciO/YrdC/YwlC family protein 3895..4455 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983697 YP_002284419.1 CDS UUR10_0006 NC_011374.1 4460 4921 D identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; sugar-phosphate isomerase, RpiB/LacA/LacB family 4460..4921 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983950 YP_002284420.1 CDS UUR10_0007 NC_011374.1 5046 5606 D hypothetical protein 5046..5606 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984233 YP_002284421.1 CDS UUR10_0008 NC_011374.1 5609 6085 D hypothetical protein 5609..6085 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983811 YP_002284422.1 CDS mgtE NC_011374.1 6232 7854 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 6232..7854 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984120 YP_002284423.1 CDS rplJ NC_011374.1 8011 8511 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 8011..8511 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984052 YP_002284424.1 CDS rplL NC_011374.1 8536 8901 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 8536..8901 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984104 YP_002284425.1 CDS UUR10_0012 NC_011374.1 9125 10675 R identified by match to protein family HMM PF02608; hypothetical protein complement(9125..10675) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984009 YP_002284426.1 CDS UUR10_0013 NC_011374.1 11068 11997 R identified by match to protein family HMM PF02653; ribose/galactose ABC transporter complement(11068..11997) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983935 YP_002284427.1 CDS UUR10_0014 NC_011374.1 11997 14207 R identified by match to protein family HMM PF02653; ribose/galactose ABC transporter complement(11997..14207) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983846 YP_002284428.1 CDS UUR10_0015 NC_011374.1 14210 15817 R identified by match to protein family HMM PF00005; methylgalactoside permease ATP-binding protein complement(14210..15817) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983687 YP_002284429.1 CDS UUR10_0016 NC_011374.1 15873 17453 R identified by match to protein family HMM PF02608; hypothetical protein complement(15873..17453) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983908 YP_002284430.1 CDS UUR10_0017 NC_011374.1 17621 18418 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; deoxyribonuclease, TatD family complement(17621..18418) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984212 YP_002284431.1 CDS trmE NC_011374.1 18420 19736 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(18420..19736) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983765 YP_002284432.1 CDS UUR10_0019 NC_011374.1 19739 20533 R DNA polymerase III delta subunit complement(19739..20533) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984023 YP_002284433.1 CDS tmk NC_011374.1 20533 21222 R identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase complement(20533..21222) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984107 YP_002284434.1 CDS UUR10_0021 NC_011374.1 21206 22069 R identified by match to protein family HMM PF00561; triacylglycerol lipase complement(21206..22069) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983975 YP_002284435.1 CDS UUR10_0022 NC_011374.1 22174 23196 R identified by match to protein family HMM PF01032; ferrichrome ABC transporter complement(22174..23196) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983898 YP_002284436.1 CDS UUR10_0023 NC_011374.1 23197 24138 R identified by match to protein family HMM PF01032; ferrichrome ABC transporter complement(23197..24138) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984093 YP_002284437.1 CDS UUR10_0024 NC_011374.1 24239 25639 R putative ABC substrate-binding protein - iron complement(24239..25639) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984064 YP_002284438.1 CDS UUR10_0025 NC_011374.1 25694 26797 R identified by match to protein family HMM PF01032; ferrichrome ABC transporter complement(25694..26797) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984302 YP_002284439.1 CDS rpsB NC_011374.1 26969 28024 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(26969..28024) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983766 YP_002284440.1 CDS UUR10_0027 NC_011374.1 28122 29096 R putative ABC substrate-binding protein - iron complement(28122..29096) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983668 YP_002284441.1 CDS UUR10_0028 NC_011374.1 29111 29857 R putative ABC substrate-binding protein - iron complement(29111..29857) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983988 YP_002284442.1 CDS UUR10_0029 NC_011374.1 29863 31983 R identified by match to protein family HMM PF00575; match to protein family HMM PF09371; protein tex complement(29863..31983) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983889 YP_002284443.1 CDS UUR10_0030 NC_011374.1 32091 34334 D putative lipoprotein 32091..34334 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984127 YP_002284444.1 CDS UUR10_0032 NC_011374.1 35150 35623 D identified by glimmer; putative; hypothetical protein 35150..35623 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984032 YP_002284445.1 CDS UUR10_0031 NC_011374.1 35597 35839 R identified by glimmer; putative; hypothetical protein complement(35597..35839) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984154 YP_002284446.1 CDS UUR10_0033 NC_011374.1 35970 36506 D hypothetical protein 35970..36506 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984259 YP_002284447.1 CDS UUR10_0034 NC_011374.1 36559 37086 R hypothetical protein complement(36559..37086) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983918 YP_002284448.1 CDS UUR10_0035 NC_011374.1 37094 37567 R hypothetical protein complement(37094..37567) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983670 YP_002284449.1 CDS UUR10_0036 NC_011374.1 37709 39241 R identified by match to protein family HMM PF02384; type I restriction enzyme complement(37709..39241) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983805 YP_002284450.1 CDS UUR10_0037 NC_011374.1 39245 42313 R identified by match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I site-specific deoxyribonuclease, HsdR family complement(39245..42313) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984223 YP_002284451.1 CDS UUR10_0038 NC_011374.1 42544 42933 R identified by match to protein family HMM PF01420; reStriction-modification enzyme mpuuiii s subunit complement(42544..42933) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984297 YP_002284452.1 CDS UUR10_0039 NC_011374.1 42999 43640 R identified by match to protein family HMM PF01420; restriction modification enzyme subunit s2a complement(42999..43640) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984080 YP_002284453.1 CDS UUR10_0040 NC_011374.1 43791 44909 R identified by match to protein family HMM PF01420; restriction-modification enzyme subunit s3a complement(43791..44909) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983859 YP_002284454.1 CDS UUR10_0041 NC_011374.1 45017 46237 D identified by match to protein family HMM PF01420; restriction-modification enzyme subunit s3b 45017..46237 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984169 YP_002284455.1 CDS UUR10_0042 NC_011374.1 46334 47722 D identified by match to protein family HMM PF04326; match to protein family HMM PF08220; divergent AAA domain family 46334..47722 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984082 YP_002284456.1 CDS gidA NC_011374.1 47798 49642 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 47798..49642 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983996 YP_002284457.1 CDS gidB NC_011374.1 49635 50345 D identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; 16S rRNA methyltransferase GidB 49635..50345 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983824 YP_002284458.1 CDS UUR10_0045 NC_011374.1 50361 50513 R identified by glimmer; putative; hypothetical protein complement(50361..50513) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984088 YP_002284459.1 CDS UUR10_0046 NC_011374.1 50551 50730 D hypothetical protein 50551..50730 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983819 YP_002284460.1 CDS UUR10_0047 NC_011374.1 50796 51143 D hypothetical protein 50796..51143 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983926 YP_002284461.1 CDS UUR10_0048 NC_011374.1 51313 53829 D identified by match to protein family HMM PF04200; lipoprotein 51313..53829 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984261 YP_002284462.1 CDS UUR10_0049 NC_011374.1 53852 56200 D hypothetical protein 53852..56200 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983816 YP_002284463.1 CDS UUR10_0050 NC_011374.1 56231 58735 D identified by match to protein family HMM PF04200; lipoprotein 56231..58735 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984095 YP_002284464.1 CDS UUR10_0051 NC_011374.1 58772 61147 D hypothetical protein 58772..61147 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983953 YP_002284465.1 CDS UUR10_0052 NC_011374.1 61162 63765 D lipoprotein 61162..63765 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983995 YP_002284466.1 CDS UUR10_0053 NC_011374.1 63795 65285 D hypothetical protein 63795..65285 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984078 YP_002284467.1 CDS UUR10_0054 NC_011374.1 65272 65787 D hypothetical protein 65272..65787 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984167 YP_002284468.1 CDS UUR10_0055 NC_011374.1 65790 66704 D hypothetical protein 65790..66704 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984254 YP_002284469.1 CDS UUR10_0056 NC_011374.1 66694 67173 D hypothetical protein 66694..67173 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983981 YP_002284470.1 CDS UUR10_0057 NC_011374.1 67163 69325 D hypothetical protein 67163..69325 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983735 YP_002284471.1 CDS UUR10_0058 NC_011374.1 69341 70876 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 69341..70876 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984130 YP_002284472.1 CDS UUR10_0059 NC_011374.1 70876 72240 D produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 70876..72240 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983899 YP_002284473.1 CDS UUR10_0060 NC_011374.1 72397 73635 D putative lipoprotein 72397..73635 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984188 YP_002284474.1 CDS UUR10_0061 NC_011374.1 73874 77278 D identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 73874..77278 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984102 YP_002284475.1 CDS secG NC_011374.1 77366 77590 D identified by match to protein family HMM TIGR00810; preprotein translocase subunit SecG 77366..77590 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984313 YP_002284476.1 CDS rnr NC_011374.1 77591 79756 D identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 77591..79756 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984230 YP_002284477.1 CDS UUR10_0064 NC_011374.1 79768 80529 D identified by glimmer; putative; hypothetical protein 79768..80529 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983860 YP_002284478.1 CDS smpB NC_011374.1 80657 81082 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 80657..81082 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983680 YP_002284479.1 CDS UUR10_0066 NC_011374.1 81102 82841 D identified by match to protein family HMM PF00005; ABC transporter, ATP-binding protein 81102..82841 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983738 YP_002284480.1 CDS UUR10_0067 NC_011374.1 82816 84612 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter, ATP-binding protein 82816..84612 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983794 YP_002284481.1 CDS UUR10_0068 NC_011374.1 84688 85482 D hypothetical protein 84688..85482 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984278 YP_002284482.1 CDS lysS NC_011374.1 85560 87041 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 85560..87041 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984238 YP_002284483.1 CDS UUR10_0070 NC_011374.1 87121 87387 R hypothetical protein complement(87121..87387) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984016 YP_002284484.1 CDS pepF_1 NC_011374.1 87412 89238 R identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase F complement(87412..89238) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984085 YP_002284485.1 CDS UUR10_0072 NC_011374.1 89342 90223 D identified by match to protein family HMM PF01515; phosphotransacetylase 89342..90223 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983858 YP_002284486.1 CDS UUR10_0073 NC_011374.1 90275 90889 R hypothetical protein complement(90275..90889) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984304 YP_002284487.1 CDS UUR10_0074 NC_011374.1 90927 91583 R hypothetical protein complement(90927..91583) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984019 YP_002284488.1 CDS UUR10_0075 NC_011374.1 91675 92550 R identified by similarity to SP:P15031; match to protein family HMM PF00005; iron(III) dicitrate transport ATP-binding protein fecE complement(91675..92550) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984035 YP_002284489.1 CDS UUR10_0076 NC_011374.1 92555 93625 R identified by match to protein family HMM PF00950; match to protein family HMM PF01032; hemin transport system permease complement(92555..93625) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984265 YP_002284490.1 CDS UUR10_0077 NC_011374.1 93637 95607 R putative ABC substrate-binding protein - iron complement(93637..95607) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984191 YP_002284491.1 CDS UUR10_0078 NC_011374.1 95843 97171 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; hemolysin 95843..97171 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983750 YP_002284492.1 CDS UUR10_0079 NC_011374.1 97198 98187 R identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein complement(97198..98187) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983961 YP_002284493.1 CDS trxB NC_011374.1 98153 99082 R identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; thioredoxin-disulfide reductase complement(98153..99082) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983741 YP_002284494.1 CDS lgt NC_011374.1 99100 100107 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(99100..100107) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983872 YP_002284495.1 CDS hprK NC_011374.1 100108 101034 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(100108..101034) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983958 YP_002284496.1 CDS tilS NC_011374.1 101034 102014 R identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthetase complement(101034..102014) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983715 YP_002284497.1 CDS pth NC_011374.1 101986 102546 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(101986..102546) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983803 YP_002284498.1 CDS dnaN NC_011374.1 102772 103911 D identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III, beta subunit 102772..103911 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983788 YP_002284499.1 CDS UUR10_0086 NC_011374.1 104106 104276 D hypothetical protein 104106..104276 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983739 YP_002284500.1 CDS gyrB NC_011374.1 104284 106236 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 104284..106236 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983980 YP_002284501.1 CDS gyrA NC_011374.1 106255 108789 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 106255..108789 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984108 YP_002284502.1 CDS UUR10_0089 NC_011374.1 108899 109369 D identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible protein CinA C- domain 108899..109369 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984255 YP_002284503.1 CDS recA NC_011374.1 109410 110411 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 109410..110411 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984222 YP_002284504.1 CDS UUR10_0091 NC_011374.1 110447 111868 D identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277; hypothetical protein 110447..111868 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984070 YP_002284505.1 CDS UUR10_0092 NC_011374.1 111943 112458 R hypothetical protein complement(111943..112458) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983834 YP_002284506.1 CDS UUR10_0093 NC_011374.1 112612 112731 R identified by glimmer; putative; hypothetical protein complement(112612..112731) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983714 YP_002284507.1 CDS UUR10_0094 NC_011374.1 113066 114028 R hypothetical protein complement(113066..114028) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983946 YP_002284508.1 CDS UUR10_0095 NC_011374.1 114343 114525 R identified by glimmer; putative; hypothetical protein complement(114343..114525) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983825 YP_002284509.1 CDS UUR10_0096 NC_011374.1 114661 114846 R hypothetical protein complement(114661..114846) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983938 YP_002284510.1 CDS UUR10_0097 NC_011374.1 115168 115362 R hypothetical protein complement(115168..115362) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984303 YP_002284511.1 CDS UUR10_0098 NC_011374.1 115346 116044 R deoxyguanosine kinase complement(115346..116044) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984248 YP_002284512.1 CDS UUR10_0099 NC_011374.1 116241 118052 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 116241..118052 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983990 YP_002284513.1 CDS UUR10_0100 NC_011374.1 118060 118359 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 118060..118359 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983837 YP_002284514.1 CDS recR NC_011374.1 118369 118974 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 118369..118974 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984215 YP_002284515.1 CDS UUR10_0102 NC_011374.1 119776 120474 R identified by similarity to RF:XP_001579764.1; hypothetical protein complement(119776..120474) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983970 YP_002284516.1 CDS ffh NC_011374.1 120663 122009 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 120663..122009 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984037 YP_002284517.1 CDS UUR10_0104 NC_011374.1 122224 124014 D hypothetical protein 122224..124014 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984283 YP_002284518.1 CDS UUR10_0105 NC_011374.1 124014 124724 D identified by match to protein family HMM PF00005; ABC transporter 124014..124724 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983720 YP_002284519.1 CDS UUR10_0106 NC_011374.1 124843 128007 D putative lipoprotein 124843..128007 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984147 YP_002284520.1 CDS UUR10_0107 NC_011374.1 128071 128328 R type I restriction modification DNA specificity family protein complement(128071..128328) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984251 YP_002284521.1 CDS UUR10_0109 NC_011374.1 128977 129444 R hypothetical protein complement(128977..129444) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984129 YP_002284522.1 CDS uvrA NC_011374.1 129669 132500 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 129669..132500 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983669 YP_002284523.1 CDS UUR10_0111 NC_011374.1 132505 134169 D putative lipoprotein 132505..134169 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984146 YP_002284524.1 CDS hpt NC_011374.1 134235 134816 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 134235..134816 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983778 YP_002284525.1 CDS UUR10_0113 NC_011374.1 134821 136968 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent zinc metallopeptidase - cell division protein 134821..136968 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983696 YP_002284526.1 CDS serS NC_011374.1 137079 138335 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 137079..138335 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983832 YP_002284527.1 CDS UUR10_0115 NC_011374.1 138574 139728 D identified by glimmer; putative; hypothetical protein 138574..139728 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984065 YP_002284528.1 CDS UUR10_0116 NC_011374.1 139805 140596 D hypothetical protein 139805..140596 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983685 YP_002284529.1 CDS UUR10_0117 NC_011374.1 140840 142399 D identified by match to protein family HMM PF00005; match to protein family HMM PF08402; spermidine/putrescine import ATP-binding protein PotA 140840..142399 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983942 YP_002284530.1 CDS UUR10_0118 NC_011374.1 142383 143390 D identified by match to protein family HMM PF00528; ABC transporter, permease protein 142383..143390 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984190 YP_002284531.1 CDS UUR10_0119 NC_011374.1 143377 144231 D identified by match to protein family HMM PF00528; ABC transporter, permease protein 143377..144231 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983779 YP_002284532.1 CDS UUR10_0120 NC_011374.1 144235 146271 D identified by match to protein family HMM PF02030; putative lipoprotein 144235..146271 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984071 YP_002284533.1 CDS UUR10_0121 NC_011374.1 146390 146992 D hypothetical protein 146390..146992 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983853 YP_002284534.1 CDS UUR10_0122 NC_011374.1 147057 148187 D hypothetical protein 147057..148187 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983755 YP_002284535.1 CDS UUR10_0123 NC_011374.1 148209 149156 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; pseudouridine synthase 148209..149156 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984245 YP_002284536.1 CDS folA NC_011374.1 154442 154912 D identified by match to protein family HMM PF00186; dihydrofolate reductase 154442..154912 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984323 YP_002284537.1 CDS UUR10_0128 NC_011374.1 154921 155598 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 154921..155598 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984143 YP_002284538.1 CDS upp NC_011374.1 155792 156415 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(155792..156415) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984353 YP_002284539.1 CDS tyrS NC_011374.1 156662 157909 R identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase complement(156662..157909) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984320 YP_002284540.1 CDS UUR10_0133 NC_011374.1 158041 158943 D identified by match to protein family HMM PF00005; ABC Transporter 158041..158943 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983769 YP_002284541.1 CDS secA NC_011374.1 158960 161482 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 158960..161482 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983666 YP_002284542.1 CDS uvrB NC_011374.1 161485 163485 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 161485..163485 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984237 YP_002284543.1 CDS ligA NC_011374.1 163579 165600 D identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase, NAD-dependent 163579..165600 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983835 YP_002284544.1 CDS UUR10_0137 NC_011374.1 165837 166532 D hypothetical protein 165837..166532 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983881 YP_002284545.1 CDS cysS NC_011374.1 166546 167856 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 166546..167856 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984015 YP_002284546.1 CDS UUR10_0139 NC_011374.1 167858 168577 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase, TrmH family, group 3 167858..168577 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984000 YP_002284547.1 CDS UUR10_0140 NC_011374.1 168585 169769 R putative lipoprotein complement(168585..169769) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984249 YP_002284548.1 CDS UUR10_0141 NC_011374.1 169781 173056 R hypothetical protein complement(169781..173056) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984203 YP_002284549.1 CDS UUR10_0142 NC_011374.1 173181 173486 R hypothetical protein complement(173181..173486) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983812 YP_002284550.1 CDS atpC NC_011374.1 173630 174040 R identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1, epsilon subunit complement(173630..174040) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983761 YP_002284551.1 CDS atpD NC_011374.1 174040 175434 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(174040..175434) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983691 YP_002284552.1 CDS atpG NC_011374.1 175458 176318 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(175458..176318) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984089 YP_002284553.1 CDS UUR10_0146 NC_011374.1 176320 177111 R hypothetical protein complement(176320..177111) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983947 YP_002284554.1 CDS atpA NC_011374.1 177126 179519 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(177126..179519) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983740 YP_002284555.1 CDS UUR10_0148 NC_011374.1 179522 179821 R ATP synthase delta subunit domain protein complement(179522..179821) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983792 YP_002284556.1 CDS atpH NC_011374.1 179831 180370 R identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1, delta subunit complement(179831..180370) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983692 YP_002284557.1 CDS UUR10_0150 NC_011374.1 180374 180766 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(180374..180766) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983896 YP_002284558.1 CDS UUR10_0151 NC_011374.1 180741 181007 D identified by glimmer; putative; hypothetical protein 180741..181007 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984182 YP_002284559.1 CDS UUR10_0152 NC_011374.1 181059 181388 R identified by match to protein family HMM PF00137; ATP synthase, C subunit complement(181059..181388) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983709 YP_002284560.1 CDS atpB NC_011374.1 181451 182278 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(181451..182278) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984010 YP_002284561.1 CDS UUR10_0154 NC_011374.1 182319 182744 R hypothetical protein complement(182319..182744) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984201 YP_002284562.1 CDS UUR10_0155 NC_011374.1 182980 183690 D hypothetical protein 182980..183690 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983861 YP_002284563.1 CDS UUR10_0156 NC_011374.1 183759 186704 D identified by match to protein family HMM PF02463; match to protein family HMM PF06470; p115 protein 183759..186704 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984228 YP_002284564.1 CDS ftsY NC_011374.1 186707 187762 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 186707..187762 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983771 YP_002284565.1 CDS UUR10_0158 NC_011374.1 187752 188051 D identified by match to protein family HMM PF04297; putative DNA-binding protein 187752..188051 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983721 YP_002284566.1 CDS UUR10_0159 NC_011374.1 188155 191952 R hypothetical protein complement(188155..191952) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984011 YP_002284567.1 CDS UUR10_0162 NC_011374.1 192392 194146 R multiple banded antigen complement(192392..194146) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984337 YP_002284568.1 CDS UUR10_0163 NC_011374.1 194416 195504 D hypothetical protein 194416..195504 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983963 YP_002284569.1 CDS UUR10_0164 NC_011374.1 195558 197630 R hypothetical protein complement(195558..197630) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983900 YP_002284570.1 CDS UUR10_0165 NC_011374.1 197718 198599 R identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD hydrolase, IIB family complement(197718..198599) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983672 YP_002284571.1 CDS trpS NC_011374.1 198625 199626 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(198625..199626) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983919 YP_002284572.1 CDS UUR10_0167 NC_011374.1 199752 200141 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 199752..200141 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984307 YP_002284573.1 CDS UUR10_0168 NC_011374.1 200128 200940 D identified by match to protein family HMM PF01513; NAD(+)/NADH kinase family protein 200128..200940 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984175 YP_002284574.1 CDS UUR10_0169 NC_011374.1 200948 201328 D identified by similarity to GB:BAC44251.1; hypothetical protein 200948..201328 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984077 YP_002284575.1 CDS UUR10_0170 NC_011374.1 201423 201644 D hypothetical protein 201423..201644 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984048 YP_002284576.1 CDS UUR10_0171 NC_011374.1 201646 202125 R identified by similarity to SP:Q9PQW3; match to protein family HMM PF02590; conserved hypothetical protein TIGR00246 complement(201646..202125) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983952 YP_002284577.1 CDS tpiA NC_011374.1 202180 202905 D identified by match to protein family HMM PF00121; triosephosphate isomerase 202180..202905 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983843 YP_002284578.1 CDS gpmI NC_011374.1 202936 204444 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 202936..204444 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983737 YP_002284579.1 CDS UUR10_0174 NC_011374.1 204487 205362 D hypothetical protein 204487..205362 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984258 YP_002284580.1 CDS eno NC_011374.1 205481 206803 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 205481..206803 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984197 YP_002284581.1 CDS UUR10_0176 NC_011374.1 206772 207737 D identified by match to protein family HMM PF00365; phosphofructokinase family protein 206772..207737 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984018 YP_002284582.1 CDS pyk NC_011374.1 207749 209173 D identified by match to protein family HMM PF00224; match to protein family HMM TIGR01064; pyruvate kinase 207749..209173 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983976 YP_002284583.1 CDS rpoB NC_011374.1 209295 213599 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 209295..213599 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983781 YP_002284584.1 CDS rpoC NC_011374.1 213621 217538 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 213621..217538 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983791 YP_002284585.1 CDS UUR10_0180 NC_011374.1 217678 218568 D multiple banded antigen 217678..218568 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983930 YP_002284586.1 CDS UUR10_0181 NC_011374.1 218666 219520 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; EDD domain protein, DegV family complement(218666..219520) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983827 YP_002284587.1 CDS UUR10_0182 NC_011374.1 219666 220262 D identified by match to protein family HMM PF01588; putative tRNA binding domain protein 219666..220262 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984103 YP_002284588.1 CDS prs NC_011374.1 220287 221282 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 220287..221282 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984001 YP_002284589.1 CDS UUR10_0184 NC_011374.1 221286 221825 D identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase homolog 221286..221825 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984247 YP_002284590.1 CDS UUR10_0185 NC_011374.1 221829 222668 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 221829..222668 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984220 YP_002284591.1 CDS UUR10_0186 NC_011374.1 222670 223896 D identified by match to protein family HMM PF00004; match to protein family HMM PF07728; recombination factor protein RarA 222670..223896 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983758 YP_002284592.1 CDS metG NC_011374.1 223916 225481 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 223916..225481 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983730 YP_002284593.1 CDS UUR10_0188 NC_011374.1 225569 226741 D hypothetical protein 225569..226741 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983713 YP_002284594.1 CDS UUR10_0189 NC_011374.1 226741 228936 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate transport system permease 226741..228936 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984005 YP_002284595.1 CDS pstB NC_011374.1 228941 229930 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 228941..229930 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983936 YP_002284596.1 CDS UUR10_0191 NC_011374.1 229954 230610 D identified by match to protein family HMM PF01895; PhoU family 229954..230610 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983808 YP_002284597.1 CDS UUR10_0192 NC_011374.1 230770 230994 D hypothetical protein 230770..230994 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983799 YP_002284598.1 CDS UUR10_0193 NC_011374.1 230998 233127 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; copper-transporting P-type ATPase 230998..233127 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983934 YP_002284599.1 CDS UUR10_0194 NC_011374.1 233593 235746 R multiple banded antigen complement(233593..235746) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983848 YP_002284600.1 CDS rpsO NC_011374.1 236094 236363 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(236094..236363) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984075 YP_002284601.1 CDS rnc NC_011374.1 236474 237184 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(236474..237184) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984042 YP_002284602.1 CDS plsX NC_011374.1 237174 238169 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(237174..238169) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984319 YP_002284603.1 CDS UUR10_0198 NC_011374.1 238174 239868 R identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599; DAK2 domain protein complement(238174..239868) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983768 YP_002284604.1 CDS UUR10_0199 NC_011374.1 239883 240149 R hypothetical protein complement(239883..240149) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984148 YP_002284605.1 CDS UUR10_0200 NC_011374.1 240252 240869 R hypothetical protein complement(240252..240869) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983921 YP_002284606.1 CDS rpmB NC_011374.1 241005 241199 D required for 70S ribosome assembly; 50S ribosomal protein L28 241005..241199 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983965 YP_002284607.1 CDS UUR10_0202 NC_011374.1 241443 242135 R identified by glimmer; putative; hypothetical protein complement(241443..242135) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983708 YP_002284608.1 CDS rpmA NC_011374.1 242246 242548 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(242246..242548) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984014 YP_002284609.1 CDS UUR10_0204 NC_011374.1 242554 242862 R identified by match to protein family HMM PF04327; hypothetical protein complement(242554..242862) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983883 YP_002284610.1 CDS rplU NC_011374.1 242868 243170 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(242868..243170) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984202 YP_002284611.1 CDS gmk NC_011374.1 243477 244049 D identified by match to protein family HMM PF00625; match to protein family HMM TIGR03263; guanylate kinase 243477..244049 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984301 YP_002284612.1 CDS UUR10_0208 NC_011374.1 244033 245040 D hypothetical protein 244033..245040 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983729 YP_002284613.1 CDS UUR10_0209 NC_011374.1 245044 245787 D identified by match to protein family HMM PF00481; protein phosphatase 245044..245787 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983875 YP_002284614.1 CDS UUR10_0210 NC_011374.1 245792 246952 D identified by match to protein family HMM PF00069; serine/threonine kinase 245792..246952 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984123 YP_002284615.1 CDS rsgA NC_011374.1 246955 247860 D identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; ribosome small subunit-dependent GTPase A 246955..247860 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984041 YP_002284616.1 CDS UUR10_0212 NC_011374.1 248058 249581 D identified by match to protein family HMM PF00909; ammonium transporter 248058..249581 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984174 YP_002284617.1 CDS UUR10_0213 NC_011374.1 249754 251316 D identified by match to protein family HMM PF00909; ammonium transporter 249754..251316 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984158 YP_002284618.1 CDS UUR10_0214 NC_011374.1 251433 252749 D hypothetical protein 251433..252749 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983749 YP_002284619.1 CDS fhs NC_011374.1 252763 254328 D identified by match to protein family HMM PF01268; formate--tetrahydrofolate ligase 252763..254328 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983681 YP_002284620.1 CDS UUR10_0216 NC_011374.1 254459 255211 D identified by match to protein family HMM PF00589; tyrosine recombinase XerC 254459..255211 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983932 YP_002284621.1 CDS UUR10_0217 NC_011374.1 255425 257773 D identified by match to protein family HMM PF00324; amino acid antiporter 255425..257773 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984125 YP_002284622.1 CDS UUR10_0218 NC_011374.1 257948 259096 D putative lipoprotein 257948..259096 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984055 YP_002284623.1 CDS UUR10_0219 NC_011374.1 259153 259470 D putative lipoprotein 259153..259470 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983786 YP_002284624.1 CDS UUR10_0220 NC_011374.1 259480 259923 D hypothetical protein 259480..259923 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983972 YP_002284625.1 CDS UUR10_0221 NC_011374.1 260097 261650 D identified by match to protein family HMM PF02608; hypothetical protein 260097..261650 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983718 YP_002284626.1 CDS infC NC_011374.1 261848 262411 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 261848..262411 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984096 YP_002284627.1 CDS rpmI NC_011374.1 262426 262620 D identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 262426..262620 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984058 YP_002284628.1 CDS rplT NC_011374.1 262675 263037 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 262675..263037 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984241 YP_002284629.1 CDS rpsJ NC_011374.1 263257 263562 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 263257..263562 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984155 YP_002284630.1 CDS rplC NC_011374.1 263585 264286 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 263585..264286 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983752 YP_002284631.1 CDS rplD NC_011374.1 264297 264932 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 264297..264932 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983667 YP_002284632.1 CDS rplW NC_011374.1 264935 265252 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 264935..265252 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983756 YP_002284633.1 CDS rplB NC_011374.1 265306 266145 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 265306..266145 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983912 YP_002284634.1 CDS rpsS NC_011374.1 266166 266432 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 266166..266432 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983844 YP_002284635.1 CDS UUR10_0231 NC_011374.1 266454 267389 D fusion of L22 and COG4933; 50S ribosomal protein L22/unknown domain fusion protein 266454..267389 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983807 YP_002284636.1 CDS rpsC NC_011374.1 267409 268182 D identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; ribosomal protein S3 267409..268182 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983804 YP_002284637.1 CDS rplP NC_011374.1 268197 268613 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 268197..268613 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983876 YP_002284638.1 CDS rpmC NC_011374.1 268613 268840 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 268613..268840 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983967 YP_002284639.1 CDS rpsQ NC_011374.1 268840 269094 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 268840..269094 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984030 YP_002284640.1 CDS rplN NC_011374.1 269114 269482 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 269114..269482 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984004 YP_002284641.1 CDS rplX NC_011374.1 269497 269829 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 269497..269829 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984142 YP_002284642.1 CDS rplE NC_011374.1 269846 270400 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 269846..270400 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984224 YP_002284643.1 CDS rpsN NC_011374.1 270404 270589 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 270404..270589 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984290 YP_002284644.1 CDS rpsH NC_011374.1 270600 270998 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 270600..270998 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983665 YP_002284645.1 CDS rplF NC_011374.1 271007 271555 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 271007..271555 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984309 YP_002284646.1 CDS rplR NC_011374.1 271574 271939 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 271574..271939 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983941 YP_002284647.1 CDS rpsE NC_011374.1 271957 272568 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 271957..272568 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983762 YP_002284648.1 CDS rplO NC_011374.1 272585 273031 D late assembly protein; 50S ribosomal protein L15 272585..273031 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983945 YP_002284649.1 CDS secY NC_011374.1 273084 274499 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 273084..274499 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983838 YP_002284650.1 CDS UUR10_0246 NC_011374.1 274509 275150 D identified by match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351; adenylate kinase 274509..275150 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984121 YP_002284651.1 CDS map NC_011374.1 275174 275923 D identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase, type I 275174..275923 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984068 YP_002284652.1 CDS infA NC_011374.1 275951 276175 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 275951..276175 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984311 YP_002284653.1 CDS rpmJ NC_011374.1 276199 276312 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 276199..276312 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984067 YP_002284654.1 CDS rpsM NC_011374.1 276342 276740 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 276342..276740 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984276 YP_002284655.1 CDS rpsK NC_011374.1 276762 277127 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 276762..277127 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983999 YP_002284656.1 CDS rpoA NC_011374.1 277164 278147 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 277164..278147 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983725 YP_002284657.1 CDS rplQ NC_011374.1 278175 278534 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 278175..278534 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983810 YP_002284658.1 CDS UUR10_0254 NC_011374.1 278636 278941 D merozoite capping protein-1 278636..278941 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983904 YP_002284659.1 CDS UUR10_0255 NC_011374.1 279085 280953 D hypothetical protein 279085..280953 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983927 YP_002284660.1 CDS UUR10_0256 NC_011374.1 280956 282263 D putative lipoprotein 280956..282263 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984110 YP_002284661.1 CDS UUR10_0257 NC_011374.1 282346 282753 D hypothetical protein 282346..282753 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983850 YP_002284662.1 CDS UUR10_0258 NC_011374.1 282743 283330 D identified by match to protein family HMM PF01205; proline dipeptidase 282743..283330 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984267 YP_002284663.1 CDS UUR10_0259 NC_011374.1 283384 285162 R putative lipoprotein complement(283384..285162) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983760 YP_002284664.1 CDS UUR10_0260 NC_011374.1 285340 288324 R identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; calcium-translocating P-type ATPase, PMCA-type complement(285340..288324) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983727 YP_002284665.1 CDS UUR10_0261 NC_011374.1 288491 288820 D identified by match to protein family HMM PF03672; hypothetical protein 288491..288820 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983679 YP_002284666.1 CDS engB NC_011374.1 288825 289451 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 288825..289451 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984099 YP_002284667.1 CDS valS NC_011374.1 289432 292056 D identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422; valyl-tRNA synthetase 289432..292056 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983986 YP_002284668.1 CDS UUR10_0264 NC_011374.1 292060 292578 D identified by match to protein family HMM PF00588; RNA methyltransferase, TrmH family 292060..292578 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984033 YP_002284669.1 CDS trmB NC_011374.1 292584 293258 D identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091; tRNA (guanine-N(7)-)-methyltransferase 292584..293258 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984076 YP_002284670.1 CDS UUR10_0267 NC_011374.1 293531 294202 D hypothetical protein 293531..294202 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984352 YP_002284671.1 CDS UUR10_0268 NC_011374.1 294249 295598 D hypothetical protein 294249..295598 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983776 YP_002284672.1 CDS UUR10_0269 NC_011374.1 295598 296056 D identified by match to protein family HMM PF01230; histidine triad protein HIT 295598..296056 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983914 YP_002284673.1 CDS UUR10_0271 NC_011374.1 296070 296822 D hypothetical protein 296070..296822 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983707 YP_002284674.1 CDS UUR10_0270 NC_011374.1 296819 297883 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(296819..297883) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984094 YP_002284675.1 CDS UUR10_0272 NC_011374.1 297896 298105 R hypothetical protein complement(297896..298105) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984157 YP_002284676.1 CDS UUR10_0273 NC_011374.1 298282 298827 D hypothetical protein 298282..298827 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984134 YP_002284677.1 CDS UUR10_0274 NC_011374.1 298831 299922 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 298831..299922 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984049 YP_002284678.1 CDS rpsU NC_011374.1 299998 300165 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 299998..300165 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983991 YP_002284679.1 CDS argS NC_011374.1 300285 301931 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 300285..301931 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983830 YP_002284680.1 CDS pgk NC_011374.1 301934 303202 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 301934..303202 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983743 YP_002284681.1 CDS UUR10_0278 NC_011374.1 303206 304297 D identified by match to protein family HMM PF05343; endo-1,4-beta-glucanase 303206..304297 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983782 YP_002284682.1 CDS deoD NC_011374.1 304372 305091 D identified by match to protein family HMM PF01048; match to protein family HMM TIGR00107; purine nucleoside phosphorylase 304372..305091 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983867 YP_002284683.1 CDS UUR10_0280 NC_011374.1 305201 305596 D identified by match to protein family HMM PF00216; DNA-binding protein HU 305201..305596 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983916 YP_002284684.1 CDS UUR10_0281 NC_011374.1 305736 307892 D identified by match to protein family HMM PF01966; match to protein family HMM PF04607; match to protein family HMM TIGR00691; ppGpp 3'-pyrophosphohydrolase 305736..307892 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983982 YP_002284685.1 CDS pyrG NC_011374.1 307892 309505 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 307892..309505 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984097 YP_002284686.1 CDS hisS NC_011374.1 309509 310774 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 309509..310774 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984213 YP_002284687.1 CDS aspS NC_011374.1 310778 312514 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 310778..312514 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984262 YP_002284688.1 CDS UUR10_0285 NC_011374.1 312507 313343 D hypothetical protein 312507..313343 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984246 YP_002284689.1 CDS msrA NC_011374.1 313396 313893 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 313396..313893 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984232 YP_002284690.1 CDS UUR10_0287 NC_011374.1 313921 314520 R hypothetical protein complement(313921..314520) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983856 YP_002284691.1 CDS UUR10_0288 NC_011374.1 314528 315001 R identified by match to protein family HMM PF00255; glutathione peroxidase complement(314528..315001) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983706 YP_002284692.1 CDS UUR10_0289 NC_011374.1 315250 325248 D identified by match to protein family HMM PF00657; hypothetical protein 315250..325248 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983910 YP_002284693.1 CDS UUR10_0290 NC_011374.1 325507 335637 D identified by match to protein family HMM PF00657; hypothetical protein 325507..335637 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984216 YP_002284694.1 CDS UUR10_0291 NC_011374.1 335791 336630 D putative lipoprotein 335791..336630 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983840 YP_002284695.1 CDS UUR10_0292 NC_011374.1 336644 337354 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 336644..337354 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983949 YP_002284696.1 CDS UUR10_0294 NC_011374.1 337354 338061 D hypothetical protein 337354..338061 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983789 YP_002284697.1 CDS efp NC_011374.1 338714 339280 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 338714..339280 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983892 YP_002284698.1 CDS UUR10_0296 NC_011374.1 339283 339585 D hypothetical protein 339283..339585 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984059 YP_002284699.1 CDS nusB NC_011374.1 339588 339971 D identified by match to protein family HMM TIGR01951; transcription antitermination factor NusB 339588..339971 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984119 YP_002284700.1 CDS UUR10_0298 NC_011374.1 339979 340683 D identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046; RNA methyltransferase, RsmE family 339979..340683 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984193 YP_002284701.1 CDS UUR10_0299 NC_011374.1 340706 341665 D hypothetical protein 340706..341665 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983833 YP_002284702.1 CDS greA NC_011374.1 346933 347403 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 346933..347403 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984326 YP_002284703.1 CDS UUR10_0309 NC_011374.1 348079 348867 D identified by match to protein family HMM PF05175; DNA methylase 348079..348867 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984328 YP_002284704.1 CDS UUR10_0310 NC_011374.1 348869 349783 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 348869..349783 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984050 YP_002284705.1 CDS UUR10_0311 NC_011374.1 350085 351050 R hypothetical protein complement(350085..351050) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983823 YP_002284706.1 CDS UUR10_0312 NC_011374.1 351053 352198 R hypothetical protein complement(351053..352198) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984221 YP_002284707.1 CDS UUR10_0313 NC_011374.1 352546 353106 D hypothetical protein 352546..353106 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984008 YP_002284708.1 CDS rpsT NC_011374.1 353172 353426 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(353172..353426) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983731 YP_002284709.1 CDS UUR10_0316 NC_011374.1 354032 354472 R identified by match to protein family HMM PF00583; ribosomal protein-alanine-acetyltransferase complement(354032..354472) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984327 YP_002284710.1 CDS UUR10_0317 NC_011374.1 354450 355025 R identified by match to protein family HMM PF00814; glycoprotease family complement(354450..355025) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983878 YP_002284711.1 CDS rluA NC_011374.1 355018 355917 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA complement(355018..355917) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984043 YP_002284712.1 CDS UUR10_0319 NC_011374.1 355920 356711 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(355920..356711) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984045 YP_002284713.1 CDS ppa NC_011374.1 356711 357256 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(356711..357256) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983923 YP_002284714.1 CDS UUR10_0321 NC_011374.1 357416 357820 D hypothetical protein 357416..357820 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983885 YP_002284715.1 CDS UUR10_0322 NC_011374.1 357848 358411 D hypothetical protein 357848..358411 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983797 YP_002284716.1 CDS UUR10_0323 NC_011374.1 358494 363221 D identified by match to protein family HMM PF02687; efflux ABC transporter, permease protein 358494..363221 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983753 YP_002284717.1 CDS nusA NC_011374.1 363336 364712 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 363336..364712 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984285 YP_002284718.1 CDS UUR10_0325 NC_011374.1 364724 364975 D identified by match to protein family HMM PF04296; hypothetical protein 364724..364975 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984181 YP_002284719.1 CDS infB NC_011374.1 365014 366858 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 365014..366858 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984100 YP_002284720.1 CDS rbfA NC_011374.1 366866 367216 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 366866..367216 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984114 YP_002284721.1 CDS UUR10_0328 NC_011374.1 367223 367633 D hypothetical protein 367223..367633 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984271 YP_002284722.1 CDS UUR10_0329 NC_011374.1 367682 368764 R putative lipoprotein complement(367682..368764) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984256 YP_002284723.1 CDS UUR10_0330 NC_011374.1 368842 369537 R identified by match to protein family HMM PF01863; hypothetical protein complement(368842..369537) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984163 YP_002284724.1 CDS lepA NC_011374.1 369550 371349 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(369550..371349) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983716 YP_002284725.1 CDS UUR10_0332 NC_011374.1 371468 372127 R identified by match to protein family HMM PF04011; LemA family complement(371468..372127) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983968 YP_002284726.1 CDS UUR10_0333 NC_011374.1 372276 372641 D hypothetical protein 372276..372641 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983905 YP_002284727.1 CDS UUR10_0334 NC_011374.1 372645 373418 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; rRNA methylase 372645..373418 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984138 YP_002284728.1 CDS UUR10_0335 NC_011374.1 373429 374346 D identified by match to protein family HMM PF06144; DNA polymerase III, delta subunit superfamily 373429..374346 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984239 YP_002284729.1 CDS UUR10_0336 NC_011374.1 374504 375772 D hypothetical protein 374504..375772 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984184 YP_002284730.1 CDS UUR10_0337 NC_011374.1 375773 376756 D hypothetical protein 375773..376756 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984171 YP_002284731.1 CDS UUR10_0338 NC_011374.1 376767 377069 R hypothetical protein complement(376767..377069) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983998 YP_002284732.1 CDS udk NC_011374.1 377098 377721 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(377098..377721) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983780 YP_002284733.1 CDS rpmF NC_011374.1 377904 378077 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 377904..378077 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984305 YP_002284734.1 CDS UUR10_0341 NC_011374.1 378087 378344 D hypothetical protein 378087..378344 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983943 YP_002284735.1 CDS UUR10_0342 NC_011374.1 378458 380623 D hypothetical protein 378458..380623 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983891 YP_002284736.1 CDS UUR10_0343 NC_011374.1 380644 381933 D hypothetical protein 380644..381933 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983979 YP_002284737.1 CDS UUR10_0344 NC_011374.1 381998 382804 D identified by match to protein family HMM PF02882; methylenetetrahydrofolate dehydrogenase 381998..382804 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984046 YP_002284738.1 CDS UUR10_0345 NC_011374.1 382876 384762 D hypothetical protein 382876..384762 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984150 YP_002284739.1 CDS dnaK NC_011374.1 384933 386735 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 384933..386735 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984266 YP_002284740.1 CDS UUR10_0347 NC_011374.1 386852 387961 D identified by match to protein family HMM TIGR00481; conserved hypothetical protein TIGR00481 386852..387961 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984159 YP_002284741.1 CDS UUR10_0348 NC_011374.1 388011 388580 D hypothetical protein 388011..388580 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984287 YP_002284742.1 CDS cmk NC_011374.1 388584 389252 D identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase 388584..389252 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984028 YP_002284743.1 CDS UUR10_0350 NC_011374.1 389336 389620 D hypothetical protein 389336..389620 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984079 YP_002284744.1 CDS UUR10_0351 NC_011374.1 389674 390468 D identified by match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 389674..390468 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984047 YP_002284745.1 CDS UUR10_0352 NC_011374.1 390613 391449 D identified by match to protein family HMM PF02616; ScpA/B protein 390613..391449 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983966 YP_002284746.1 CDS scpB NC_011374.1 391481 392647 D functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B 391481..392647 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984199 YP_002284747.1 CDS tig NC_011374.1 392741 394159 D identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115; trigger factor 392741..394159 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984126 YP_002284748.1 CDS lon NC_011374.1 394261 396636 D identified by match to protein family HMM PF00004; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 394261..396636 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983764 YP_002284749.1 CDS UUR10_0356 NC_011374.1 396731 398077 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 396731..398077 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983694 YP_002284750.1 CDS UUR10_0357 NC_011374.1 398061 398726 D identified by match to protein family HMM PF04816; hypothetical protein 398061..398726 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983818 YP_002284751.1 CDS UUR10_0358 NC_011374.1 398707 399495 D identified by match to protein family HMM PF01784; NIF3 family protein 398707..399495 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984083 YP_002284752.1 CDS UUR10_0359 NC_011374.1 399548 399877 R hypothetical protein complement(399548..399877) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983994 YP_002284753.1 CDS UUR10_0360 NC_011374.1 400094 401122 R hypothetical protein complement(400094..401122) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984315 YP_002284754.1 CDS truB NC_011374.1 401223 401912 D identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 401223..401912 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983688 YP_002284755.1 CDS UUR10_0362 NC_011374.1 401872 402723 D identified by match to protein family HMM PF01687; match to protein family HMM PF06574; riboflavin biosynthesis protein RibF homolog 401872..402723 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983757 YP_002284756.1 CDS UUR10_0363 NC_011374.1 402865 404514 D putative lipoprotein 402865..404514 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983917 YP_002284757.1 CDS UUR10_0364 NC_011374.1 404592 405692 D identified by match to protein family HMM PF01032; ferrichrome ABC transporter 404592..405692 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983787 YP_002284758.1 CDS UUR10_0365 NC_011374.1 405795 407420 D putative lipoprotein 405795..407420 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984084 YP_002284759.1 CDS UUR10_0366 NC_011374.1 407435 408505 D identified by match to protein family HMM PF01032; citrate-dependent iron transport, membrane-bound protein 407435..408505 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983978 YP_002284760.1 CDS UUR10_0367 NC_011374.1 408511 409614 D identified by match to protein family HMM PF01032; ferrichrome ABC transporter 408511..409614 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984242 YP_002284761.1 CDS UUR10_0368 NC_011374.1 409764 411398 D putative ABC substrate-binding protein - iron 409764..411398 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983974 YP_002284762.1 CDS UUR10_0369 NC_011374.1 411491 413125 D putative ABC substrate-binding protein - iron 411491..413125 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984144 YP_002284763.1 CDS UUR10_0370 NC_011374.1 413282 413806 D putative lipoprotein 413282..413806 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984012 YP_002284764.1 CDS UUR10_0371 NC_011374.1 413848 415275 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase (NAD) family protein complement(413848..415275) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984260 YP_002284765.1 CDS asnA NC_011374.1 415307 416296 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(415307..416296) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984179 YP_002284766.1 CDS pgsA NC_011374.1 416274 416930 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(416274..416930) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984298 YP_002284767.1 CDS asnC NC_011374.1 416911 418275 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(416911..418275) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984218 YP_002284768.1 CDS UUR10_0375 NC_011374.1 418369 418992 R hypothetical protein complement(418369..418992) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983815 YP_002284769.1 CDS UUR10_0376 NC_011374.1 419132 420649 R hypothetical protein complement(419132..420649) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983924 YP_002284770.1 CDS pdp NC_011374.1 420894 422195 D identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644; pyrimidine-nucleoside phosphorylase 420894..422195 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983959 YP_002284771.1 CDS alaS NC_011374.1 422226 424946 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 422226..424946 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984051 YP_002284772.1 CDS UUR10_0379 NC_011374.1 424939 425382 D identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein 424939..425382 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984281 YP_002284773.1 CDS leuS NC_011374.1 425398 427818 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 425398..427818 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983733 YP_002284774.1 CDS UUR10_0381 NC_011374.1 428036 428428 D hypothetical protein 428036..428428 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984115 YP_002284775.1 CDS UUR10_0382 NC_011374.1 428444 428572 D identified by glimmer; putative; hypothetical protein 428444..428572 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984185 YP_002284776.1 CDS UUR10_0383 NC_011374.1 429096 429356 D hypothetical protein 429096..429356 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983955 YP_002284777.1 CDS UUR10_0384 NC_011374.1 429861 430466 R identified by glimmer; putative; hypothetical protein complement(429861..430466) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984038 YP_002284778.1 CDS UUR10_0385 NC_011374.1 430963 431406 D hypothetical protein 430963..431406 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983802 YP_002284779.1 CDS UUR10_0386 NC_011374.1 431763 433208 D identified by match to protein family HMM PF03237; match to protein family HMM TIGR01547; phage terminase, large subunit, pbsx family 431763..433208 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983839 YP_002284780.1 CDS UUR10_0387 NC_011374.1 433198 434562 D hypothetical protein 433198..434562 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984294 YP_002284781.1 CDS UUR10_0388 NC_011374.1 434555 438037 D hypothetical protein 434555..438037 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983987 YP_002284782.1 CDS UUR10_0389 NC_011374.1 438048 438416 D hypothetical protein 438048..438416 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984006 YP_002284783.1 CDS UUR10_0390 NC_011374.1 438419 438745 D hypothetical protein 438419..438745 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983913 YP_002284784.1 CDS UUR10_0391 NC_011374.1 438761 439948 D hypothetical protein 438761..439948 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984210 YP_002284785.1 CDS UUR10_0392 NC_011374.1 440109 440786 D identified by similarity to GB:AAF30569.1; hypothetical protein 440109..440786 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984101 YP_002284786.1 CDS UUR10_0393 NC_011374.1 440786 443029 D hypothetical protein 440786..443029 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983724 YP_002284787.1 CDS UUR10_0394 NC_011374.1 443467 444015 D hypothetical protein 443467..444015 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984317 YP_002284788.1 CDS UUR10_0395 NC_011374.1 443984 444427 D hypothetical protein 443984..444427 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983676 YP_002284789.1 CDS UUR10_0396 NC_011374.1 445311 445988 R hypothetical protein complement(445311..445988) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983817 YP_002284790.1 CDS UUR10_0397 NC_011374.1 445970 446431 R hypothetical protein complement(445970..446431) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983893 YP_002284791.1 CDS UUR10_0398 NC_011374.1 446421 447110 R hypothetical protein complement(446421..447110) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983689 YP_002284792.1 CDS bet NC_011374.1 447100 447756 R identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913; phage recombination protein Bet complement(447100..447756) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983728 YP_002284793.1 CDS UUR10_0400 NC_011374.1 447756 448091 R hypothetical protein complement(447756..448091) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983993 YP_002284794.1 CDS UUR10_0401 NC_011374.1 448081 448317 R hypothetical protein complement(448081..448317) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983897 YP_002284795.1 CDS UUR10_0402 NC_011374.1 448310 448492 R hypothetical protein complement(448310..448492) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984145 YP_002284796.1 CDS UUR10_0403 NC_011374.1 448449 448685 R hypothetical protein complement(448449..448685) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984136 YP_002284797.1 CDS UUR10_0404 NC_011374.1 448692 448988 R hypothetical protein complement(448692..448988) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984056 YP_002284798.1 CDS UUR10_0405 NC_011374.1 448994 449335 R hypothetical protein complement(448994..449335) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983821 YP_002284799.1 CDS UUR10_0406 NC_011374.1 449337 449510 R hypothetical protein complement(449337..449510) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984195 YP_002284800.1 CDS UUR10_0407 NC_011374.1 449494 450120 R hypothetical protein complement(449494..450120) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983717 YP_002284801.1 CDS UUR10_0408 NC_011374.1 450110 450877 R identified by match to protein family HMM PF00589; integrase-recombinase protein complement(450110..450877) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984166 YP_002284802.1 CDS UUR10_0409 NC_011374.1 451043 451171 R identified by glimmer; putative; hypothetical protein complement(451043..451171) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984205 YP_002284803.1 CDS UUR10_0410 NC_011374.1 451264 451761 R identified by glimmer; putative; hypothetical protein complement(451264..451761) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984020 YP_002284804.1 CDS UUR10_0411 NC_011374.1 451743 451937 R putative lipoprotein complement(451743..451937) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984091 YP_002284805.1 CDS UUR10_0412 NC_011374.1 452110 453036 R hypothetical protein complement(452110..453036) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983828 YP_002284806.1 CDS UUR10_0413 NC_011374.1 453112 453834 R identified by glimmer; putative; hypothetical protein complement(453112..453834) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983884 YP_002284807.1 CDS UUR10_0414 NC_011374.1 454152 455189 R hypothetical protein complement(454152..455189) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984131 YP_002284808.1 CDS UUR10_0415 NC_011374.1 455388 456659 R multiple banded antigen complement(455388..456659) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984036 YP_002284809.1 CDS UUR10_0416 NC_011374.1 457049 458116 D multiple banded antigen 457049..458116 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984291 YP_002284810.1 CDS UUR10_0417 NC_011374.1 458180 459661 D hypothetical protein 458180..459661 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984299 YP_002284811.1 CDS UUR10_0418 NC_011374.1 459757 460833 D multiple banded antigen 459757..460833 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984253 YP_002284812.1 CDS UUR10_0419 NC_011374.1 460941 462329 D identified by glimmer; putative; hypothetical protein 460941..462329 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983874 YP_002284813.1 CDS polC NC_011374.1 462620 466948 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 462620..466948 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983773 YP_002284814.1 CDS UUR10_0421 NC_011374.1 467062 468702 D putative lipoprotein 467062..468702 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984031 YP_002284815.1 CDS UUR10_0422 NC_011374.1 468778 469581 R hypothetical protein complement(468778..469581) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984128 YP_002284816.1 CDS UUR10_0423 NC_011374.1 469581 470087 R identified by match to protein family HMM PF02525; hypothetical protein complement(469581..470087) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983847 YP_002284817.1 CDS uvrC NC_011374.1 470231 471985 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(470231..471985) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984034 YP_002284818.1 CDS UUR10_0425 NC_011374.1 471985 472959 R identified by match to protein family HMM PF01210; match to protein family HMM PF07479; NAD+ dependent glycerol-3-phosphate dehydrogenase complement(471985..472959) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984194 YP_002284819.1 CDS engA NC_011374.1 472969 474297 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(472969..474297) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984152 YP_002284820.1 CDS UUR10_0427 NC_011374.1 474437 475534 D identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein 474437..475534 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983712 YP_002284821.1 CDS mraZ NC_011374.1 475611 476048 D identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242; MraZ protein 475611..476048 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983907 YP_002284822.1 CDS mraW NC_011374.1 476038 476964 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 476038..476964 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984269 YP_002284823.1 CDS UUR10_0430 NC_011374.1 476982 478166 D hypothetical protein 476982..478166 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984007 YP_002284824.1 CDS UUR10_0431 NC_011374.1 478326 479201 D identified by match to protein family HMM PF07751; hypothetical protein 478326..479201 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983734 YP_002284825.1 CDS UUR10_0432 NC_011374.1 479207 483064 D viral phosphatase 479207..483064 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983814 YP_002284826.1 CDS UUR10_0433 NC_011374.1 483093 483905 D hypothetical protein 483093..483905 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983849 YP_002284827.1 CDS UUR10_0434 NC_011374.1 484028 486142 D identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; chaperone protein ClpB 484028..486142 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983928 YP_002284828.1 CDS UUR10_0435 NC_011374.1 486295 488079 D hypothetical protein 486295..488079 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984280 YP_002284829.1 CDS acpS NC_011374.1 488087 488443 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(488087..488443) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984200 YP_002284830.1 CDS UUR10_0437 NC_011374.1 488447 488746 R hypothetical protein complement(488447..488746) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983841 YP_002284831.1 CDS UUR10_0438 NC_011374.1 488791 489015 R hypothetical protein complement(488791..489015) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984054 YP_002284832.1 CDS UUR10_0439 NC_011374.1 489059 489337 R hypothetical protein complement(489059..489337) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983960 YP_002284833.1 CDS rnhC NC_011374.1 489391 490344 R identified by match to protein family HMM PF01351; ribonuclease HIII complement(489391..490344) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983882 YP_002284834.1 CDS UUR10_0441 NC_011374.1 490449 491054 D hypothetical protein 490449..491054 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983785 YP_002284835.1 CDS UUR10_0442 NC_011374.1 491153 492199 R identified by match to protein family HMM PF01032; hemin permease complement(491153..492199) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984186 YP_002284836.1 CDS UUR10_0443 NC_011374.1 492209 493090 R identified by match to protein family HMM PF01032; ferrichrome ABC transporter complement(492209..493090) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984295 YP_002284837.1 CDS UUR10_0444 NC_011374.1 493244 494692 R putative ABC substrate-binding protein - iron complement(493244..494692) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984274 YP_002284838.1 CDS mnmA NC_011374.1 494815 495957 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(494815..495957) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983795 YP_002284839.1 CDS UUR10_0446 NC_011374.1 496071 496967 D hypothetical protein 496071..496967 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984156 YP_002284840.1 CDS UUR10_0447 NC_011374.1 497174 497971 R integrase-recombinase protein complement(497174..497971) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984111 YP_002284841.1 CDS UUR10_0448 NC_011374.1 498058 498816 R identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; membrane protein complement(498058..498816) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984002 YP_002284842.1 CDS UUR10_0449 NC_011374.1 499027 500223 D hypothetical protein 499027..500223 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984086 YP_002284843.1 CDS grpE NC_011374.1 500308 500964 R identified by match to protein family HMM PF01025; co-chaperone GrpE complement(500308..500964) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983800 YP_002284844.1 CDS dnaJ NC_011374.1 500964 502091 R identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349; chaperone protein DnaJ complement(500964..502091) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983871 YP_002284845.1 CDS UUR10_0452 NC_011374.1 502224 502694 R hypothetical protein complement(502224..502694) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984243 YP_002284846.1 CDS UUR10_0453 NC_011374.1 502675 503595 R hypothetical protein complement(502675..503595) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983671 YP_002284847.1 CDS ileS NC_011374.1 503745 506447 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 503745..506447 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984250 YP_002284848.1 CDS UUR10_0455 NC_011374.1 506451 507413 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 506451..507413 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984133 YP_002284849.1 CDS metK NC_011374.1 507434 508564 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 507434..508564 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983937 YP_002284850.1 CDS mutM NC_011374.1 508759 509592 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(508759..509592) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984346 YP_002284851.1 CDS exo NC_011374.1 509629 510498 R identified by match to protein family HMM PF01367; match to protein family HMM PF02739; Exo complement(509629..510498) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983989 YP_002284852.1 CDS dnaE NC_011374.1 510502 513411 R catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand; in the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE complement(510502..513411) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983722 YP_002284853.1 CDS UUR10_0461 NC_011374.1 513411 513623 R hypothetical protein complement(513411..513623) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983747 YP_002284854.1 CDS UUR10_0462 NC_011374.1 513710 514675 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein complement(513710..514675) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984192 YP_002284855.1 CDS thiI NC_011374.1 514686 515864 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(514686..515864) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984292 YP_002284856.1 CDS UUR10_0464 NC_011374.1 515842 516708 R hypothetical protein complement(515842..516708) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984053 YP_002284857.1 CDS UUR10_0465 NC_011374.1 516831 517559 D hypothetical protein 516831..517559 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983922 YP_002284858.1 CDS hrcA NC_011374.1 517563 518636 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 517563..518636 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983842 YP_002284859.1 CDS UUR10_0467 NC_011374.1 518626 519144 D hypothetical protein 518626..519144 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983855 YP_002284860.1 CDS UUR10_0468 NC_011374.1 519160 519870 D identified by match to protein family HMM PF04167; hypothetical protein 519160..519870 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984109 YP_002284861.1 CDS UUR10_0469 NC_011374.1 519863 520630 D hypothetical protein 519863..520630 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983873 YP_002284862.1 CDS UUR10_0470 NC_011374.1 520790 522526 D lipoprotein 520790..522526 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983783 YP_002284863.1 CDS UUR10_0471 NC_011374.1 522846 523049 R hypothetical protein complement(522846..523049) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984270 YP_002284864.1 CDS UUR10_0472 NC_011374.1 523353 523865 R identified by match to protein family HMM PF00210; urease complement(523353..523865) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984183 YP_002284865.1 CDS ureD NC_011374.1 523988 524851 R identified by match to protein family HMM PF01774; urease accessory protein UreD complement(523988..524851) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984211 YP_002284866.1 CDS ureG NC_011374.1 524861 525481 R identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101; urease accessory protein UreG complement(524861..525481) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984135 YP_002284867.1 CDS UUR10_0475 NC_011374.1 525558 526265 R identified by match to protein family HMM PF01730; urease accessory protein UreF complement(525558..526265) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984060 YP_002284868.1 CDS UUR10_0476 NC_011374.1 526252 526701 R involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE complement(526252..526701) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983969 YP_002284869.1 CDS ureC NC_011374.1 526768 528564 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(526768..528564) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983798 YP_002284870.1 CDS ureB NC_011374.1 528603 528977 R identified by match to protein family HMM PF00699; match to protein family HMM TIGR00192; urease, beta subunit complement(528603..528977) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983852 YP_002284871.1 CDS ureA NC_011374.1 529029 529334 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(529029..529334) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983887 YP_002284872.1 CDS UUR10_0480 NC_011374.1 529664 530815 D identified by match to protein family HMM PF00005; ferrichrome transport ATP-binding protein 529664..530815 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984098 YP_002284873.1 CDS rrmJ NC_011374.1 530945 531688 D identified by match to protein family HMM PF01479; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J 530945..531688 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983746 YP_002284874.1 CDS UUR10_0483 NC_011374.1 531678 532760 D identified by match to protein family HMM PF00817; DNA polymerase family protein 531678..532760 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983973 YP_002284875.1 CDS ruvB NC_011374.1 532749 533687 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(532749..533687) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983813 YP_002284876.1 CDS UUR10_0484 NC_011374.1 533677 534264 R identified by match to protein family HMM PF07499; holliday junction ATP-dependent DNA helicase RuvA complement(533677..534264) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984207 YP_002284877.1 CDS UUR10_0485 NC_011374.1 534300 535475 R hypothetical protein complement(534300..535475) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984044 YP_002284878.1 CDS UUR10_0486 NC_011374.1 535579 536583 R hypothetical protein complement(535579..536583) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984300 YP_002284879.1 CDS proS NC_011374.1 536688 538106 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(536688..538106) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983723 YP_002284880.1 CDS UUR10_0488 NC_011374.1 538164 538613 R identified by match to protein family HMM PF01592; SUF system FeS assembly protein, NifU family complement(538164..538613) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983957 YP_002284881.1 CDS UUR10_0489 NC_011374.1 538600 539808 R identified by match to protein family HMM PF00266; probable cysteine desulfurase complement(538600..539808) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983866 YP_002284882.1 CDS UUR10_0490 NC_011374.1 540021 543407 D putative lipoprotein 540021..543407 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983985 YP_002284883.1 CDS UUR10_0491 NC_011374.1 543407 544066 D identified by match to protein family HMM PF00834; D-ribulose-5-phosphate 3 epimerase 543407..544066 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983886 YP_002284884.1 CDS UUR10_0492 NC_011374.1 544335 545171 R transposase complement(544335..545171) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983683 YP_002284885.1 CDS UUR10_0493 NC_011374.1 545210 545953 R identified by glimmer; putative; hypothetical protein complement(545210..545953) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983682 YP_002284886.1 CDS UUR10_0494 NC_011374.1 545958 546491 R transposase complement(545958..546491) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984282 YP_002284887.1 CDS UUR10_0496 NC_011374.1 546591 547208 R identified by glimmer; putative; hypothetical protein complement(546591..547208) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984277 YP_002284888.1 CDS UUR10_0497 NC_011374.1 547183 547857 R hypothetical protein complement(547183..547857) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984235 YP_002284889.1 CDS UUR10_0498 NC_011374.1 547919 548602 R identified by glimmer; putative; hypothetical protein complement(547919..548602) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984132 YP_002284890.1 CDS UUR10_0499 NC_011374.1 548829 551096 R identified by similarity to GB:CAE77662.1; hypothetical protein complement(548829..551096) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983751 YP_002284891.1 CDS UUR10_0500 NC_011374.1 551089 552144 R identified by match to protein family HMM PF00004; AAA family ATPase complement(551089..552144) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983674 YP_002284892.1 CDS pheT NC_011374.1 552285 554603 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(552285..554603) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984257 YP_002284893.1 CDS pheS NC_011374.1 554636 555637 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(554636..555637) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984024 YP_002284894.1 CDS UUR10_0503 NC_011374.1 555644 556111 R hypothetical protein complement(555644..556111) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984118 YP_002284895.1 CDS nadE NC_011374.1 556104 556871 R identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase complement(556104..556871) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983870 YP_002284896.1 CDS obgE NC_011374.1 556879 558186 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(556879..558186) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983929 YP_002284897.1 CDS UUR10_0506 NC_011374.1 558189 558890 R hypothetical protein complement(558189..558890) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983705 YP_002284898.1 CDS UUR10_0507 NC_011374.1 558895 559044 D identified by glimmer; putative; hypothetical protein 558895..559044 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983675 YP_002284899.1 CDS fmt NC_011374.1 559058 559975 R identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase complement(559058..559975) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983944 YP_002284900.1 CDS UUR10_0509 NC_011374.1 560050 560775 R hypothetical protein complement(560050..560775) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983879 YP_002284901.1 CDS def NC_011374.1 561028 561624 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 561028..561624 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983962 YP_002284902.1 CDS UUR10_0514 NC_011374.1 563563 566130 D identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01061; DNA topoisomerase IV, A subunit family protein 563563..566130 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984312 YP_002284903.1 CDS UUR10_0517 NC_011374.1 567263 567457 D hypothetical protein 567263..567457 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984137 YP_002284904.1 CDS UUR10_0518 NC_011374.1 567908 568093 D identified by glimmer; putative; hypothetical protein 567908..568093 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984072 YP_002284905.1 CDS UUR10_0519 NC_011374.1 568209 568448 D hypothetical protein 568209..568448 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984272 YP_002284906.1 CDS UUR10_0520 NC_011374.1 568499 597808 R identified by match to protein family HMM PF07198; hypothetical protein complement(568499..597808) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983939 YP_002284907.1 CDS UUR10_0521 NC_011374.1 598411 598578 D MTA/SAH nucleosidase 598411..598578 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983699 YP_002284908.1 CDS def NC_011374.1 598719 599315 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 598719..599315 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984063 YP_002284909.1 CDS parE NC_011374.1 599322 601250 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 599322..601250 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984139 YP_002284910.1 CDS parC NC_011374.1 601256 603814 D identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01061; DNA topoisomerase IV, A subunit 601256..603814 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984208 YP_002284911.1 CDS yqeH NC_011374.1 603814 604899 D identified by match to protein family HMM TIGR03597; ribosome biogenesis GTPase YqeH 603814..604899 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984273 YP_002284912.1 CDS nadD NC_011374.1 604927 606105 D catalyzes the reversible adenylation of nicotinate mononucleotide to nicotinic acid adenine dinucleotide; putative nicotinate-nucleotide adenylyltransferase 604927..606105 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983742 YP_002284913.1 CDS mtnN NC_011374.1 606115 606807 D identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704; MTA/SAH nucleosidase 606115..606807 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983809 YP_002284914.1 CDS UUR10_0528 NC_011374.1 606915 607166 D hypothetical protein 606915..607166 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984165 YP_002284915.1 CDS UUR10_0529 NC_011374.1 607471 609798 D identified by match to protein family HMM PF07198; hypothetical protein 607471..609798 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983719 YP_002284916.1 CDS UUR10_0532 NC_011374.1 613870 615714 R putative lipoprotein complement(613870..615714) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984025 YP_002284917.1 CDS UUR10_0533 NC_011374.1 615870 618347 R identified by match to protein family HMM PF04851; type III restriction enzyme, res subunit family complement(615870..618347) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983865 YP_002284918.1 CDS UUR10_0534 NC_011374.1 618353 619435 R identified by match to protein family HMM PF01555; DNA methylase complement(618353..619435) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984112 YP_002284919.1 CDS UUR10_0535 NC_011374.1 619564 619938 R type III restriction-modification system: methylase complement(619564..619938) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984066 YP_002284920.1 CDS UUR10_0538 NC_011374.1 623481 625100 D identified by match to protein family HMM PF02608; hypothetical protein 623481..625100 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984231 YP_002284921.1 CDS UUR10_0539 NC_011374.1 625432 642696 R identified by match to protein family HMM PF07198; hypothetical protein complement(625432..642696) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984219 YP_002284922.1 CDS UUR10_0540 NC_011374.1 642923 646234 R putative lipoprotein complement(642923..646234) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984293 YP_002284923.1 CDS ackA NC_011374.1 646509 647669 D identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016; acetate kinase 646509..647669 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984040 YP_002284924.1 CDS UUR10_0542 NC_011374.1 647673 649790 R putative lipoprotein complement(647673..649790) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984149 YP_002284925.1 CDS UUR10_0543 NC_011374.1 649975 651285 R identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein complement(649975..651285) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983880 YP_002284926.1 CDS UUR10_0544 NC_011374.1 651433 654174 R putative lipoprotein complement(651433..654174) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983951 YP_002284927.1 CDS apt_1 NC_011374.1 654391 654912 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(654391..654912) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983793 YP_002284928.1 CDS UUR10_0546 NC_011374.1 654933 655709 R hypothetical protein complement(654933..655709) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983759 YP_002284929.1 CDS UUR10_0547 NC_011374.1 655856 656200 D identified by match to protein family HMM PF03129; glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) 655856..656200 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984296 YP_002284930.1 CDS UUR10_0551 NC_011374.1 658181 675592 R identified by match to protein family HMM PF00041; match to protein family HMM PF07198; fibronectin repeat protein complement(658181..675592) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983869 YP_002284931.1 CDS UUR10_0552 NC_011374.1 675804 676940 D hypothetical protein 675804..676940 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984162 YP_002284932.1 CDS UUR10_0553 NC_011374.1 677441 677572 R transposase, mutator type complement(677441..677572) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984029 YP_002284933.1 CDS UUR10_0554 NC_011374.1 678185 678895 R hypothetical protein complement(678185..678895) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983920 YP_002284934.1 CDS apt_2 NC_011374.1 681531 682052 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(681531..682052) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983695 YP_002284935.1 CDS UUR10_0559 NC_011374.1 682073 685096 R hypothetical protein complement(682073..685096) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983915 YP_002284936.1 CDS UUR10_0560 NC_011374.1 685310 686059 D identified by glimmer; putative; hypothetical protein 685310..686059 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983686 YP_002284937.1 CDS UUR10_0561 NC_011374.1 686129 686596 D identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; conserved hypothetical protein TIGR00043 686129..686596 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983770 YP_002284938.1 CDS era NC_011374.1 686589 687491 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 686589..687491 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983831 YP_002284939.1 CDS recO NC_011374.1 687491 688207 D identified by match to protein family HMM TIGR00613; DNA repair protein RecO 687491..688207 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983909 YP_002284940.1 CDS glyS NC_011374.1 688243 689664 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 688243..689664 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984069 YP_002284941.1 CDS UUR10_0565 NC_011374.1 689652 691598 D identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391; DNA primase 689652..691598 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984263 YP_002284942.1 CDS rpsD NC_011374.1 691657 692265 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(691657..692265) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984178 YP_002284943.1 CDS UUR10_0567 NC_011374.1 692536 694227 D hypothetical protein 692536..694227 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983763 YP_002284944.1 CDS UUR10_0576 NC_011374.1 695341 696132 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein complement(695341..696132) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984339 YP_002284945.1 CDS UUR10_0577 NC_011374.1 696136 698367 R identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA complement(696136..698367) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983664 YP_002284946.1 CDS UUR10_0578 NC_011374.1 698392 699213 R hypothetical protein complement(698392..699213) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983711 YP_002284947.1 CDS UUR10_0579 NC_011374.1 699214 700152 R identified by match to protein family HMM PF00535; glycosyltransferase complement(699214..700152) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983748 YP_002284948.1 CDS UUR10_0582 NC_011374.1 700575 700778 D hypothetical protein 700575..700778 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984351 YP_002284949.1 CDS UUR10_0583 NC_011374.1 700768 701907 D hypothetical protein 700768..701907 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984252 YP_002284950.1 CDS UUR10_0584 NC_011374.1 701930 702871 D hypothetical protein 701930..702871 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984117 YP_002284951.1 CDS UUR10_0585 NC_011374.1 702887 703120 D identified by match to protein family HMM PF00550; acyl carrier protein 702887..703120 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983984 YP_002284952.1 CDS dcm NC_011374.1 703778 704737 D identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 703778..704737 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984329 YP_002284953.1 CDS UUR10_0588 NC_011374.1 704769 705329 R type II site-specific deoxyribonuclease complement(704769..705329) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984106 YP_002284954.1 CDS UUR10_0589 NC_011374.1 705827 707194 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(705827..707194) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983790 YP_002284955.1 CDS UUR10_0590 NC_011374.1 707291 709621 R identified by match to protein family HMM PF01580; cell division protein complement(707291..709621) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984062 YP_002284956.1 CDS UUR10_0591 NC_011374.1 709641 711323 R hypothetical protein complement(709641..711323) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983736 YP_002284957.1 CDS UUR10_0592 NC_011374.1 711468 713438 D identified by match to protein family HMM PF00005; match to protein family HMM PF03412; ABC Transporter 711468..713438 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983822 YP_002284958.1 CDS UUR10_0594 NC_011374.1 713467 713778 D hypothetical protein 713467..713778 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983863 YP_002284959.1 CDS cdsA NC_011374.1 713768 714913 R identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase complement(713768..714913) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983931 YP_002284960.1 CDS frr NC_011374.1 714924 715475 R identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor complement(714924..715475) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983940 YP_002284961.1 CDS pyrH NC_011374.1 715493 716200 R identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075; UMP kinase complement(715493..716200) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984017 YP_002284962.1 CDS tsf NC_011374.1 716291 717166 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(716291..717166) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984153 YP_002284963.1 CDS UUR10_0602 NC_011374.1 718100 719158 D identified by match to protein family HMM PF01032; hypothetical ferrichrome ABC transporter 718100..719158 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984330 YP_002284964.1 CDS UUR10_0603 NC_011374.1 719160 720185 D identified by match to protein family HMM PF01032; ferric anguibactin transport system permerase protein 719160..720185 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984308 YP_002284965.1 CDS UUR10_0604 NC_011374.1 720225 721847 D putative ABC substrate-binding protein - iron 720225..721847 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984090 YP_002284966.1 CDS UUR10_0605 NC_011374.1 721929 722147 D hypothetical protein 721929..722147 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983826 YP_002284967.1 CDS UUR10_0607 NC_011374.1 723289 726708 R identified by similarity to GB:ACA32698.1; match to protein family HMM PF07198; hypothetical protein complement(723289..726708) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984141 YP_002284968.1 CDS UUR10_0608 NC_011374.1 726993 728780 R hypothetical protein complement(726993..728780) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984227 YP_002284969.1 CDS UUR10_0609 NC_011374.1 728878 730680 R hypothetical protein complement(728878..730680) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984229 YP_002284970.1 CDS pepF_2 NC_011374.1 730755 732581 R identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase F complement(730755..732581) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984286 YP_002284971.1 CDS tuf NC_011374.1 732678 733862 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(732678..733862) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983772 YP_002284972.1 CDS fusA NC_011374.1 733999 736065 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(733999..736065) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983854 YP_002284973.1 CDS rpsG NC_011374.1 736092 736559 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(736092..736559) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983864 YP_002284974.1 CDS rpsL NC_011374.1 736589 737014 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(736589..737014) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984021 YP_002284975.1 CDS UUR10_0615 NC_011374.1 737198 738718 R identified by match to protein family HMM PF03767; 5'-nucleotidase, lipoprotein e complement(737198..738718) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983684 YP_002284976.1 CDS UUR10_0616 NC_011374.1 739004 739153 R hypothetical protein complement(739004..739153) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983796 YP_002284977.1 CDS UUR10_0617 NC_011374.1 739420 739896 R identified by glimmer; putative; hypothetical protein complement(739420..739896) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984196 YP_002284978.1 CDS UUR10_0621 NC_011374.1 741951 743609 R identified by match to protein family HMM PF02878; match to protein family HMM PF02879; phosphoglucomutase/phosphomannomutase family protein complement(741951..743609) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984310 YP_002284979.1 CDS cdd NC_011374.1 743640 744035 R identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354; cytidine deaminase complement(743640..744035) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983933 YP_002284980.1 CDS UUR10_0624 NC_011374.1 744255 745328 R identified by match to protein family HMM PF00557; match to protein family HMM PF01321; peptidase/creatianse family protein complement(744255..745328) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984350 YP_002284981.1 CDS rpmG NC_011374.1 745339 745500 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(745339..745500) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983857 YP_002284982.1 CDS thrS NC_011374.1 745561 747303 R catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase complement(745561..747303) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983732 YP_002284983.1 CDS UUR10_0628 NC_011374.1 747460 748356 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; EDD domain protein, DegV family 747460..748356 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983767 YP_002284984.1 CDS truA NC_011374.1 748353 749078 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(748353..749078) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983983 YP_002284985.1 CDS UUR10_0629 NC_011374.1 749140 750456 R identified by match to protein family HMM PF02361; cobalt transport protein complement(749140..750456) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983902 YP_002284986.1 CDS cbiO NC_011374.1 750457 751758 R with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(750457..751758) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984022 YP_002284987.1 CDS cbiO NC_011374.1 751746 752630 R with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(751746..752630) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983901 YP_002284988.1 CDS rplA NC_011374.1 752773 753462 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(752773..753462) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984176 YP_002284989.1 CDS rplK NC_011374.1 753465 753917 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(753465..753917) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984264 YP_002284990.1 CDS UUR10_0634 NC_011374.1 754192 760983 D identified by match to protein family HMM PF02687; efflux ABC transporter, permease protein 754192..760983 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984164 YP_002284991.1 CDS gatB NC_011374.1 761184 762617 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(761184..762617) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983701 YP_002284992.1 CDS gatA NC_011374.1 762620 764053 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(762620..764053) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984214 YP_002284993.1 CDS UUR10_0637 NC_011374.1 764043 764327 R hypothetical protein complement(764043..764327) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984061 YP_002284994.1 CDS UUR10_0638 NC_011374.1 764349 765377 R in some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; hypothetical protein complement(764349..765377) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983948 YP_002284995.1 CDS ung NC_011374.1 765404 766042 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(765404..766042) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984124 YP_002284996.1 CDS UUR10_0640 NC_011374.1 766021 767787 R putative lipoprotein complement(766021..767787) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984226 YP_002284997.1 CDS UUR10_0641 NC_011374.1 767790 769250 R identified by match to protein family HMM PF03796; replicative DNA helicase complement(767790..769250) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983754 YP_002284998.1 CDS rplI NC_011374.1 769257 769694 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(769257..769694) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983801 YP_002284999.1 CDS rpsR NC_011374.1 769779 770018 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(769779..770018) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984198 YP_002285000.1 CDS ssb NC_011374.1 770027 770533 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein complement(770027..770533) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984289 YP_002285001.1 CDS rpsF NC_011374.1 770579 771061 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(770579..771061) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983862 YP_002285002.1 CDS UUR10_0646 NC_011374.1 771235 771744 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family 771235..771744 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983774 YP_002285003.1 CDS UUR10_0649 NC_011374.1 772370 774199 R putative lipoprotein complement(772370..774199) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983678 YP_002285004.1 CDS UUR10_0650 NC_011374.1 774219 775241 R hypothetical protein complement(774219..775241) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983845 YP_002285005.1 CDS UUR10_0651 NC_011374.1 775250 776731 R hypothetical protein complement(775250..776731) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983971 YP_002285006.1 CDS UUR10_0652 NC_011374.1 777108 777599 R hypothetical protein complement(777108..777599) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984116 YP_002285007.1 CDS UUR10_0653 NC_011374.1 777608 781000 R identified by match to protein family HMM PF00496; extracellular solute-binding protein complement(777608..781000) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984187 YP_002285008.1 CDS UUR10_0654 NC_011374.1 781019 786691 R hypothetical protein complement(781019..786691) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983703 YP_002285009.1 CDS UUR10_0655 NC_011374.1 786710 788029 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; oligopeptide transport system permease protein complement(786710..788029) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983820 YP_002285010.1 CDS UUR10_0656 NC_011374.1 788047 789612 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport system permease protein complement(788047..789612) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984244 YP_002285011.1 CDS UUR10_0657 NC_011374.1 789616 790614 R identified by match to protein family HMM PF00528; oligopeptide transport system permease protein complement(789616..790614) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984160 YP_002285012.1 CDS UUR10_0658 NC_011374.1 790619 791764 R identified by match to protein family HMM PF00528; oligopeptide transport system permease protein complement(790619..791764) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984316 YP_002285013.1 CDS UUR10_0659 NC_011374.1 791780 792220 R hypothetical protein complement(791780..792220) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984092 YP_002285014.1 CDS UUR10_0660 NC_011374.1 792246 793442 R putative lipoprotein complement(792246..793442) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984026 YP_002285015.1 CDS UUR10_0661 NC_011374.1 793506 793685 R hypothetical protein complement(793506..793685) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983911 YP_002285016.1 CDS UUR10_0662 NC_011374.1 793953 795437 R identified by match to protein family HMM PF02588; hypothetical protein complement(793953..795437) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983704 YP_002285017.1 CDS rplS NC_011374.1 795571 795942 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(795571..795942) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983806 YP_002285018.1 CDS trmD NC_011374.1 795953 796639 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(795953..796639) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984168 YP_002285019.1 CDS rpsP NC_011374.1 796652 796957 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(796652..796957) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984318 YP_002285020.1 CDS UUR10_0666 NC_011374.1 797045 797878 R identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein complement(797045..797878) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984172 YP_002285021.1 CDS UUR10_0667 NC_011374.1 797912 799702 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase domain protein complement(797912..799702) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984105 YP_002285022.1 CDS UUR10_0668 NC_011374.1 799862 801439 R identified by glimmer; putative; hypothetical protein complement(799862..801439) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983726 YP_002285023.1 CDS UUR10_0669 NC_011374.1 801842 802816 R hypothetical protein complement(801842..802816) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983977 YP_002285024.1 CDS UUR10_0670 NC_011374.1 803041 804312 R putative lipoprotein complement(803041..804312) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983925 YP_002285025.1 CDS UUR10_0671 NC_011374.1 804688 808791 R viral phosphatase complement(804688..808791) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983700 YP_002285026.1 CDS UUR10_0672 NC_011374.1 808988 810724 D hypothetical protein 808988..810724 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984140 YP_002285027.1 CDS UUR10_0673 NC_011374.1 810810 812096 D identified by match to protein family HMM PF07885; potassium channel protein 810810..812096 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983895 YP_002285028.1 CDS UUR10_0674 NC_011374.1 812134 813048 R hypothetical protein complement(812134..813048) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983997 YP_002285029.1 CDS UUR10_0675 NC_011374.1 813057 814010 R hypothetical protein complement(813057..814010) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984225 YP_002285030.1 CDS rpsI NC_011374.1 814081 814482 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(814081..814482) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984268 YP_002285031.1 CDS rplM NC_011374.1 814502 814948 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(814502..814948) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983677 YP_002285032.1 CDS UUR10_0680 NC_011374.1 816952 832023 R identified by glimmer; putative; hypothetical protein complement(816952..832023) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984177 YP_002285033.1 CDS UUR10_0681 NC_011374.1 832010 846406 R identified by glimmer; putative; hypothetical protein complement(832010..846406) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984013 YP_002285034.1 CDS UUR10_0683 NC_011374.1 846708 848297 D identified by match to protein family HMM PF00324; amino acid transporter protein 846708..848297 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983693 YP_002285035.1 CDS UUR10_0684 NC_011374.1 848477 848977 D identified by match to protein family HMM TIGR00964; preprotein translocase, SecE subunit family 848477..848977 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984236 YP_002285036.1 CDS UUR10_0685 NC_011374.1 849003 849776 D identified by match to protein family HMM PF02357; match to protein family HMM TIGR01956; NusG family protein 849003..849776 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983954 YP_002285037.1 CDS UUR10_0686 NC_011374.1 850480 851817 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase complement(850480..851817) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983890 YP_002285038.1 CDS UUR10_0687 NC_011374.1 851807 853429 R identified by match to protein family HMM PF01554; DNA damage inducible protein - mate transporter family complement(851807..853429) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983888 YP_002285039.1 CDS UUR10_0688 NC_011374.1 853896 855461 R identified by match to protein family HMM PF01554; DNA damage inducible protein - mate transporter family complement(853896..855461) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983851 YP_002285040.1 CDS deoC NC_011374.1 855628 856275 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(855628..856275) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983775 YP_002285041.1 CDS tkt NC_011374.1 856288 858252 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(856288..858252) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983690 YP_002285042.1 CDS UUR10_0691 NC_011374.1 858295 858558 R identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphohistidinoprotein-hexose phosphotransferase complement(858295..858558) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984279 YP_002285043.1 CDS UUR10_0692 NC_011374.1 858661 860259 R identified by match to protein family HMM PF00614; cardiolipin synthase complement(858661..860259) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984209 YP_002285044.1 CDS UUR10_0694 NC_011374.1 860575 860895 R identified by match to protein family HMM PF00085; match to protein family HMM PF05768; thioredoxin complement(860575..860895) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984348 YP_002285045.1 CDS topA NC_011374.1 860923 862959 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(860923..862959) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984275 YP_002285046.1 CDS UUR10_0696 NC_011374.1 863032 863742 R hypothetical protein complement(863032..863742) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984003 YP_002285047.1 CDS ylqF NC_011374.1 863794 864618 R identified by match to protein family HMM PF01926; match to protein family HMM TIGR03596; ribosome biogenesis GTP-binding protein YlqF complement(863794..864618) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984113 YP_002285048.1 CDS UUR10_0698 NC_011374.1 864630 865070 R hypothetical protein complement(864630..865070) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984314 YP_002285049.1 CDS tdk NC_011374.1 865108 865779 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(865108..865779) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983744 YP_002285050.1 CDS ychF NC_011374.1 865786 866892 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(865786..866892) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983868 YP_002285051.1 CDS fba NC_011374.1 866909 867778 R identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase, class II complement(866909..867778) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983784 YP_002285052.1 CDS rpoE NC_011374.1 867781 868263 R participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta complement(867781..868263) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984073 YP_002285053.1 CDS UUR10_0703 NC_011374.1 868314 869531 R identified by match to protein family HMM PF01966; HD domain protein complement(868314..869531) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984087 YP_002285054.1 CDS gltX NC_011374.1 869539 870987 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(869539..870987) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984189 YP_002285055.1 CDS UUR10_0705 NC_011374.1 870977 871774 R identified by match to protein family HMM PF00288; hypothetical protein complement(870977..871774) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984081 YP_002285056.1 CDS ksgA NC_011374.1 871796 872641 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(871796..872641) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983702 YP_002285057.1 CDS UUR10_0707 NC_011374.1 872643 873794 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(872643..873794) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984284 YP_002285058.1 CDS rnpA NC_011374.1 873814 874170 R identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component complement(873814..874170) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983906 YP_002285059.1 CDS rpmH NC_011374.1 874176 874322 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(874176..874322) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983964 UUR10_0129 tRNA UUR10_0129 NC_011374.1 155657 155730 D tRNA-Gly 155657..155730 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984057 UUR10_0160 tRNA UUR10_0160 NC_011374.1 192139 192217 D tRNA-Ile 192139..192217 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984234 UUR10_0161 tRNA UUR10_0161 NC_011374.1 192219 192296 D tRNA-Ala 192219..192296 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984333 UUR10_0266 tRNA UUR10_0266 NC_011374.1 293295 293375 D tRNA-His 293295..293375 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984206 UUR10_0304 tRNA UUR10_0304 NC_011374.1 347483 347568 D tRNA-Tyr 347483..347568 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983698 UUR10_0305 tRNA UUR10_0305 NC_011374.1 347572 347648 D tRNA-Gln 347572..347648 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984343 UUR10_0306 tRNA UUR10_0306 NC_011374.1 347713 347789 D tRNA-Lys 347713..347789 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984338 UUR10_0307 tRNA UUR10_0307 NC_011374.1 347851 347938 D tRNA-Leu 347851..347938 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984335 UUR10_0308 tRNA UUR10_0308 NC_011374.1 347943 348016 D tRNA-Gly 347943..348016 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984334 UUR10_0457 tRNA UUR10_0457 NC_011374.1 508614 508697 R tRNA-Leu complement(508614..508697) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984027 UUR10_0568 tRNA UUR10_0568 NC_011374.1 694308 694378 R tRNA-Phe complement(694308..694378) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983673 UUR10_t03 tRNA UUR10_t03 NC_011374.1 694380 694455 R tRNA-Asp complement(694380..694455) Ureaplasma urealyticum serovar 10 str. ATCC 33699 9514855 UUR10_0569 tRNA UUR10_0569 NC_011374.1 694457 694535 R tRNA-Met complement(694457..694535) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984342 UUR10_0570 tRNA UUR10_0570 NC_011374.1 694592 694686 R tRNA-Ser complement(694592..694686) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984341 UUR10_0571 tRNA UUR10_0571 NC_011374.1 694753 694832 R tRNA-Met complement(694753..694832) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984347 UUR10_0572 tRNA UUR10_0572 NC_011374.1 694833 694911 R tRNA-Met complement(694833..694911) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984345 UUR10_0573 tRNA UUR10_0573 NC_011374.1 694914 694992 R tRNA-Pro complement(694914..694992) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984340 UUR10_0574 tRNA UUR10_0574 NC_011374.1 695037 695115 R tRNA-Arg complement(695037..695115) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984332 UUR10_0575 tRNA UUR10_0575 NC_011374.1 695119 695193 R tRNA-Cys complement(695119..695193) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984354 UUR10_0580 tRNA UUR10_0580 NC_011374.1 700240 700318 R tRNA-Arg complement(700240..700318) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984170 UUR10_0581 tRNA UUR10_0581 NC_011374.1 700398 700476 R tRNA-Arg complement(700398..700476) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984344 UUR10_0586 tRNA UUR10_0586 NC_011374.1 703192 703266 D tRNA-Sec 703192..703266 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984173 UUR10_0598 tRNA UUR10_0598 NC_011374.1 717310 717395 R tRNA-Leu complement(717310..717395) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984151 UUR10_0599 tRNA UUR10_0599 NC_011374.1 717398 717475 R tRNA-Lys complement(717398..717475) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984331 UUR10_0600 tRNA UUR10_0600 NC_011374.1 717545 717620 R tRNA-Thr complement(717545..717620) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984349 UUR10_t02 tRNA UUR10_t02 NC_011374.1 717622 717697 R tRNA-Val complement(717622..717697) Ureaplasma urealyticum serovar 10 str. ATCC 33699 9514853 UUR10_0601 tRNA UUR10_0601 NC_011374.1 717744 717820 R tRNA-Glu complement(717744..717820) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984336 UUR10_t01 tRNA UUR10_t01 NC_011374.1 717822 717896 R tRNA-Asn complement(717822..717896) Ureaplasma urealyticum serovar 10 str. ATCC 33699 9514854 UUR10_0623 tRNA UUR10_0623 NC_011374.1 744167 744242 R tRNA-Trp complement(744167..744242) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984204 UUR10_0693 tRNA UUR10_0693 NC_011374.1 860396 860486 R tRNA-Ser complement(860396..860486) Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984217 UUR10_0124 rRNA rrs NC_011374.1 149403 150929 D 16S ribosomal RNA 149403..150929 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984240 UUR10_0125 rRNA rrl NC_011374.1 151224 154125 D 23S ribosomal RNA 151224..154125 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984322 UUR10_0126 rRNA rrf NC_011374.1 154194 154297 D 5S ribosomal RNA 154194..154297 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984324 UUR10_0300 rRNA rrs NC_011374.1 341923 343449 D 16S ribosomal RNA 341923..343449 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6983777 UUR10_0301 rRNA rrl NC_011374.1 343745 346646 D 23S ribosomal RNA 343745..346646 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984321 UUR10_0302 rRNA rrf NC_011374.1 346715 346818 D 5S ribosomal RNA 346715..346818 Ureaplasma urealyticum serovar 10 str. ATCC 33699 6984325