-- dump date 20111121_015501 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 543728000001 SEQ_END SEQ_END NC_012791.1 5626353 5626353 DR NC_012791.1; contig end 5626353..5626353 Variovorax paradoxus S110 543728000002 SEQ_END SEQ_END NC_012792.1 1128644 1128644 DR NC_012792.1; contig end 1128644..1128644 Variovorax paradoxus S110 YP_002941930.1 CDS dnaA NC_012791.1 37 1416 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 37..1416 Variovorax paradoxus S110 7972736 YP_002941931.1 CDS Vapar_0002 NC_012791.1 1506 2612 D KEGG: pol:Bpro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, subunit beta; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain; DNA polymerase III subunit beta 1506..2612 Variovorax paradoxus S110 7973960 YP_002941932.1 CDS Vapar_0003 NC_012791.1 2747 5371 D KEGG: pol:Bpro_0003 DNA gyrase subunit B; TIGRFAM: DNA gyrase, subunit beta; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit B 2747..5371 Variovorax paradoxus S110 7973961 YP_002941933.1 CDS Vapar_0004 NC_012791.1 5659 6645 D KEGG: oca:OCAR_5419 transcription factor jumonji, JmjC; hypothetical protein 5659..6645 Variovorax paradoxus S110 7973962 YP_002941934.1 CDS Vapar_0005 NC_012791.1 6745 7032 R hypothetical protein complement(6745..7032) Variovorax paradoxus S110 7973963 YP_002941935.1 CDS Vapar_0006 NC_012791.1 7335 7847 D KEGG: bbr:BB3068 hypothetical protein; hypothetical protein 7335..7847 Variovorax paradoxus S110 7973964 YP_002941936.1 CDS Vapar_0007 NC_012791.1 7977 8465 D KEGG: nmu:Nmul_A1517 hypothetical protein; hypothetical protein 7977..8465 Variovorax paradoxus S110 7973965 YP_002941937.1 CDS Vapar_0008 NC_012791.1 8597 9844 D PFAM: metallophosphoesterase; KEGG: pol:Bpro_0021 metallophosphoesterase; metallophosphoesterase 8597..9844 Variovorax paradoxus S110 7973966 YP_002941938.1 CDS Vapar_0009 NC_012791.1 9860 10360 R KEGG: mpt:Mpe_A1029 hypothetical protein; hypothetical protein complement(9860..10360) Variovorax paradoxus S110 7973967 YP_002941939.1 CDS Vapar_0010 NC_012791.1 10565 11140 D KEGG: aav:Aave_0023 hypothetical protein; hypothetical protein 10565..11140 Variovorax paradoxus S110 7973968 YP_002941940.1 CDS Vapar_0011 NC_012791.1 11137 12108 R KEGG: mpt:Mpe_A0046 hypothetical protein; hypothetical protein complement(11137..12108) Variovorax paradoxus S110 7973969 YP_002941941.1 CDS Vapar_0012 NC_012791.1 12105 13373 R PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: pol:Bpro_0025 cardiolipin synthase 2; cardiolipin synthase 2 complement(12105..13373) Variovorax paradoxus S110 7973970 YP_002941942.1 CDS Vapar_0013 NC_012791.1 13407 14135 R PFAM: endonuclease/exonuclease/phosphatase; KEGG: mpt:Mpe_A0048 hypothetical protein; endonuclease/exonuclease/phosphatase complement(13407..14135) Variovorax paradoxus S110 7973971 YP_002941943.1 CDS Vapar_0014 NC_012791.1 14401 14829 D KEGG: mlo:mlr2363 serine/threonine kinase; serine/threonine kinase 14401..14829 Variovorax paradoxus S110 7973972 YP_002941944.1 CDS Vapar_0015 NC_012791.1 14922 15500 R PFAM: protein of unknown function DUF1520; KEGG: dac:Daci_0023 hypothetical protein; hypothetical protein complement(14922..15500) Variovorax paradoxus S110 7973973 YP_002941945.1 CDS Vapar_0016 NC_012791.1 15650 16741 R KEGG: pol:Bpro_0028 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(15650..16741) Variovorax paradoxus S110 7973974 YP_002941946.1 CDS Vapar_0017 NC_012791.1 16817 17716 R PFAM: pirin; KEGG: rso:RSc0541 pirin-like protein; pirin complement(16817..17716) Variovorax paradoxus S110 7973975 YP_002941947.1 CDS Vapar_0018 NC_012791.1 17773 18525 R PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2418 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferaser complement(17773..18525) Variovorax paradoxus S110 7973976 YP_002941948.1 CDS Vapar_0019 NC_012791.1 18522 19796 R PFAM: glycosyl transferase family 51; KEGG: pna:Pnap_0025 glycosyl transferase family protein; glycosyl transferase family protein complement(18522..19796) Variovorax paradoxus S110 7973977 YP_002941949.1 CDS Vapar_0020 NC_012791.1 19807 20376 R KEGG: pna:Pnap_0026 hypothetical protein; hypothetical protein complement(19807..20376) Variovorax paradoxus S110 7973978 YP_002941950.1 CDS Vapar_0021 NC_012791.1 20357 21286 R KEGG: pna:Pnap_0027 hypothetical protein; hypothetical protein complement(20357..21286) Variovorax paradoxus S110 7973979 YP_002941951.1 CDS Vapar_0022 NC_012791.1 21305 23380 R PFAM: Vault protein inter-alpha-trypsin domain protein; von Willebrand factor type A; SMART: von Willebrand factor type A; Vault protein inter-alpha-trypsin, metazoa; KEGG: pna:Pnap_0028 vault protein inter-alpha-trypsin subunit; Vault protein inter-alpha-trypsin domain-containing protein complement(21305..23380) Variovorax paradoxus S110 7973980 YP_002941952.1 CDS Vapar_0023 NC_012791.1 23591 25072 D PFAM: Inner membrane CreD family protein; KEGG: bcj:BCAM1996 inner membrane protein CreD; hypothetical protein 23591..25072 Variovorax paradoxus S110 7973981 YP_002941953.1 CDS Vapar_0024 NC_012791.1 25121 27529 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: pol:Bpro_0780 penicillin-binding protein 1A; penicillin-binding protein, 1A family 25121..27529 Variovorax paradoxus S110 7973982 YP_002941954.1 CDS Vapar_0025 NC_012791.1 27609 28214 D KEGG: pna:Pnap_1227 hypothetical protein; hypothetical protein 27609..28214 Variovorax paradoxus S110 7973983 YP_002941955.1 CDS Vapar_0026 NC_012791.1 28221 29663 R part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC complement(28221..29663) Variovorax paradoxus S110 7973984 YP_002941956.1 CDS Vapar_0027 NC_012791.1 29660 30442 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pna:Pnap_0030 two component transcriptional regulator; winged helix family two component transcriptional regulator complement(29660..30442) Variovorax paradoxus S110 7973985 YP_002941957.1 CDS Vapar_0028 NC_012791.1 31014 31973 D KEGG: dia:Dtpsy_0973 hypothetical protein; hypothetical protein 31014..31973 Variovorax paradoxus S110 7973986 YP_002941958.1 CDS Vapar_0029 NC_012791.1 31986 32390 R KEGG: dac:Daci_0034 MerR family transcriptional regulator; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator complement(31986..32390) Variovorax paradoxus S110 7973987 YP_002941959.1 CDS Vapar_0030 NC_012791.1 32387 32581 R PFAM: Heavy metal transport/detoxification protein; KEGG: bxe:Bxe_A3162 heavy metal binding protein; Heavy metal transport/detoxification protein complement(32387..32581) Variovorax paradoxus S110 7973988 YP_002941960.1 CDS Vapar_0031 NC_012791.1 32717 34960 D TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: aav:Aave_0034 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 32717..34960 Variovorax paradoxus S110 7973989 YP_002941961.1 CDS Vapar_0032 NC_012791.1 34974 35456 R PFAM: GCN5-related N-acetyltransferase; KEGG: psa:PST_2720 acetyltransferase (GNAT) family protein; GCN5-like N-acetyltransferaser complement(34974..35456) Variovorax paradoxus S110 7973990 YP_002941962.1 CDS Vapar_0033 NC_012791.1 35524 36750 R PFAM: beta-ketoacyl synthase; KEGG: dar:Daro_1172 beta-ketoacyl synthase; beta-ketoacyl synthase complement(35524..36750) Variovorax paradoxus S110 7973991 YP_002941963.1 CDS Vapar_0034 NC_012791.1 36747 37049 R KEGG: mch:Mchl_5008 phosphopantetheine-binding; phosphopantetheine-binding complement(36747..37049) Variovorax paradoxus S110 7973992 YP_002941964.1 CDS Vapar_0035 NC_012791.1 37067 37945 R KEGG: pnu:Pnuc_0952 hypothetical protein; hypothetical protein complement(37067..37945) Variovorax paradoxus S110 7973993 YP_002941965.1 CDS Vapar_0036 NC_012791.1 38088 38777 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: aav:Aave_0041 two component transcriptional regulator; winged helix family two component transcriptional regulator 38088..38777 Variovorax paradoxus S110 7973994 YP_002941966.1 CDS Vapar_0037 NC_012791.1 38774 40186 D PFAM: ATP-binding region ATPase domain protein; Two-component sensor kinase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_0042 integral membrane sensor signal transduction histidine kinase; histidine kinase 38774..40186 Variovorax paradoxus S110 7973995 YP_002941967.1 CDS Vapar_0038 NC_012791.1 40183 40668 R PFAM: endoribonuclease L-PSP; KEGG: bpy:Bphyt_7184 endoribonuclease L-PSP; endoribonuclease L-PSP complement(40183..40668) Variovorax paradoxus S110 7973996 YP_002941968.1 CDS Vapar_0039 NC_012791.1 40691 41794 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pol:Bpro_0063 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase complement(40691..41794) Variovorax paradoxus S110 7973997 YP_002941969.1 CDS Vapar_0040 NC_012791.1 41879 43729 R PFAM: protein of unknown function DUF1446; KEGG: cti:RALTA_B0801 conserved hypothetical protein; DUF1446; hypothetical protein complement(41879..43729) Variovorax paradoxus S110 7973998 YP_002941970.1 CDS Vapar_0041 NC_012791.1 43726 44517 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(43726..44517) Variovorax paradoxus S110 7973999 YP_002941971.1 CDS Vapar_0042 NC_012791.1 44670 45278 R PFAM: glutathione S-transferase domain; KEGG: aav:Aave_0048 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein complement(44670..45278) Variovorax paradoxus S110 7974000 YP_002941972.1 CDS Vapar_0043 NC_012791.1 45467 45652 D PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0066 protein of unknown function DUF1328; hypothetical protein 45467..45652 Variovorax paradoxus S110 7974001 YP_002941973.1 CDS Vapar_0044 NC_012791.1 45652 45798 D hypothetical protein 45652..45798 Variovorax paradoxus S110 7974002 YP_002941974.1 CDS Vapar_0045 NC_012791.1 45983 47941 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 45983..47941 Variovorax paradoxus S110 7974003 YP_002941975.1 CDS gidB NC_012791.1 47938 48579 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 47938..48579 Variovorax paradoxus S110 7974004 YP_002941976.1 CDS Vapar_0047 NC_012791.1 48695 49309 D PFAM: lysine exporter (LYSE/YGGA); KEGG: pol:Bpro_0075 lysine exporter protein (LysE/YggA); lysine exporter LysE/YggA 48695..49309 Variovorax paradoxus S110 7974005 YP_002941977.1 CDS Vapar_0048 NC_012791.1 49317 50231 D PFAM: cobyrinic acid ac-diamide synthase; KEGG: rfr:Rfer_0051 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 49317..50231 Variovorax paradoxus S110 7974006 YP_002941978.1 CDS Vapar_0049 NC_012791.1 50231 50782 D PFAM: protein of unknown function DUF1234; KEGG: ajs:Ajs_0030 hypothetical protein; hypothetical protein 50231..50782 Variovorax paradoxus S110 7974007 YP_002941979.1 CDS Vapar_0050 NC_012791.1 50782 51729 D KEGG: dia:Dtpsy_0050 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein 50782..51729 Variovorax paradoxus S110 7974008 YP_002941980.1 CDS Vapar_0051 NC_012791.1 51838 52737 D KEGG: dia:Dtpsy_0052 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain 1 protein 51838..52737 Variovorax paradoxus S110 7974009 YP_002941981.1 CDS Vapar_0052 NC_012791.1 52820 54244 R PFAM: FAD linked oxidase; KEGG: pol:Bpro_0111 FAD linked oxidase-like; FAD linked oxidase complement(52820..54244) Variovorax paradoxus S110 7974010 YP_002941982.1 CDS Vapar_0053 NC_012791.1 54331 54837 D KEGG: pol:Bpro_3701 hypothetical protein; hypothetical protein 54331..54837 Variovorax paradoxus S110 7974011 YP_002941983.1 CDS Vapar_0054 NC_012791.1 54854 55462 D TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pol:Bpro_0113 ATP:cob(I)alamin adenosyltransferase; ATP/cobalamin adenosyltransferase 54854..55462 Variovorax paradoxus S110 7974012 YP_002941984.1 CDS Vapar_0055 NC_012791.1 55459 55827 D hypothetical protein 55459..55827 Variovorax paradoxus S110 7974013 YP_002941985.1 CDS Vapar_0056 NC_012791.1 56158 56676 D PFAM: adenylate cyclase; KEGG: geo:Geob_2046 adenylate cyclase; adenylate cyclase 56158..56676 Variovorax paradoxus S110 7974014 YP_002941986.1 CDS Vapar_0057 NC_012791.1 56686 57324 R PFAM: lipolytic protein G-D-S-L family; KEGG: nmc:NMC1592 lipase; G-D-S-L family lipolytic protein complement(56686..57324) Variovorax paradoxus S110 7974015 YP_002941987.1 CDS Vapar_0058 NC_012791.1 57338 57520 R hypothetical protein complement(57338..57520) Variovorax paradoxus S110 7974016 YP_002941988.1 CDS Vapar_0059 NC_012791.1 57699 58130 D KEGG: mms:mma_0343 hypothetical protein; hypothetical protein 57699..58130 Variovorax paradoxus S110 7974017 YP_002941989.1 CDS Vapar_0060 NC_012791.1 58150 58410 R KEGG: aav:Aave_1088 hypothetical protein; hypothetical protein complement(58150..58410) Variovorax paradoxus S110 7974018 YP_002941990.1 CDS Vapar_0061 NC_012791.1 58525 59469 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pna:Pnap_0071 LysR family transcriptional regulator; LysR family transcriptional regulator complement(58525..59469) Variovorax paradoxus S110 7974019 YP_002941991.1 CDS Vapar_0062 NC_012791.1 59665 60267 D PFAM: regulatory protein TetR; KEGG: pol:Bpro_0119 TetR family transcriptional regulator; TetR family transcriptional regulator 59665..60267 Variovorax paradoxus S110 7974020 YP_002941992.1 CDS Vapar_0063 NC_012791.1 60346 60459 D hypothetical protein 60346..60459 Variovorax paradoxus S110 7974021 YP_002941993.1 CDS Vapar_0064 NC_012791.1 60477 61394 D KEGG: pol:Bpro_0118 hypothetical protein; hypothetical protein 60477..61394 Variovorax paradoxus S110 7974022 YP_002941994.1 CDS Vapar_0065 NC_012791.1 61452 61730 R TIGRFAM: cell division topological specificity factor MinE; PFAM: septum formation topological specificity factor MinE; KEGG: dia:Dtpsy_0086 cell division topological specificity factor MinE; cell division topological specificity factor MinE complement(61452..61730) Variovorax paradoxus S110 7974023 YP_002941995.1 CDS Vapar_0066 NC_012791.1 61734 62549 R TIGRFAM: septum site-determining protein MinD; PFAM: cobyrinic acid ac-diamide synthase; KEGG: aav:Aave_0125 septum site-determining protein MinD; septum site-determining protein MinD complement(61734..62549) Variovorax paradoxus S110 7974024 YP_002941996.1 CDS Vapar_0067 NC_012791.1 62605 63378 R TIGRFAM: septum site-determining protein MinC; PFAM: septum formation inhibitor MinC; septum formation inhibitor MinC domain protein; KEGG: aav:Aave_0124 septum site-determining protein MinC; septum site-determining protein MinC complement(62605..63378) Variovorax paradoxus S110 7974025 YP_002941997.1 CDS Vapar_0068 NC_012791.1 63500 64786 R TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: dia:Dtpsy_0068 uracil-xanthine permease; uracil-xanthine permease complement(63500..64786) Variovorax paradoxus S110 7974026 YP_002941998.1 CDS Vapar_0069 NC_012791.1 64882 65304 R PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0061 phenylacetic acid degradation-related protein; thioesterase superfamily protein complement(64882..65304) Variovorax paradoxus S110 7974027 YP_002941999.1 CDS Vapar_0070 NC_012791.1 65388 66728 D KEGG: pna:Pnap_0074 hypothetical protein; hypothetical protein 65388..66728 Variovorax paradoxus S110 7974028 YP_002942000.1 CDS Vapar_0071 NC_012791.1 66743 68560 R catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase complement(66743..68560) Variovorax paradoxus S110 7974029 YP_002942001.1 CDS Vapar_0072 NC_012791.1 68562 69503 R PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: bxe:Bxe_C0922 3-hydroxyacyl-CoA dehydrogenase; NAD-binding 3-hydroxyacyl-CoA dehydrogenase complement(68562..69503) Variovorax paradoxus S110 7974030 YP_002942002.1 CDS Vapar_0073 NC_012791.1 69514 70506 R PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0604 hypothetical protein; hypothetical protein complement(69514..70506) Variovorax paradoxus S110 7974031 YP_002942003.1 CDS Vapar_0074 NC_012791.1 70530 71456 R PFAM: protein of unknown function DUF849; KEGG: bxe:Bxe_C0921 3-keto-5-aminohexanoate cleavage enzyme; hypothetical protein complement(70530..71456) Variovorax paradoxus S110 7974032 YP_002942004.1 CDS Vapar_0075 NC_012791.1 71588 72298 D PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: bja:bll5961 transcriptional regulatory protein; Crp/Fnr family transcriptional regulator 71588..72298 Variovorax paradoxus S110 7974033 YP_002942005.1 CDS Vapar_0076 NC_012791.1 72342 74144 R KEGG: lch:Lcho_0089 flavoprotein involved in K+ transport; potassium transport flavoprotein complement(72342..74144) Variovorax paradoxus S110 7974034 YP_002942006.1 CDS Vapar_0077 NC_012791.1 74348 76294 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: mpt:Mpe_A1612 acetoin catabolism regulatory protein; Fis family GAF modulated sigma-54 specific transcriptional regulator complement(74348..76294) Variovorax paradoxus S110 7974035 YP_002942007.1 CDS Vapar_0078 NC_012791.1 76439 76660 R TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: pfo:Pfl01_0300 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase family protein complement(76439..76660) Variovorax paradoxus S110 7974036 YP_002942008.1 CDS Vapar_0079 NC_012791.1 76671 77411 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ppu:PP_2503 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR complement(76671..77411) Variovorax paradoxus S110 7974037 YP_002942009.1 CDS Vapar_0080 NC_012791.1 77523 78434 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ppu:PP_2502 LysR family transcriptional regulator; LysR family transcriptional regulator 77523..78434 Variovorax paradoxus S110 7974038 YP_002942010.1 CDS Vapar_0081 NC_012791.1 78447 80357 R PFAM: Tannase and feruloyl esterase; KEGG: bcm:Bcenmc03_6136 feruloyl esterase; Tannase and feruloyl esterase complement(78447..80357) Variovorax paradoxus S110 7974039 YP_002942011.1 CDS Vapar_0082 NC_012791.1 80466 81344 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: msl:Msil_1853 AraC family transcriptional regulator; AraC family transcriptional regulator complement(80466..81344) Variovorax paradoxus S110 7974040 YP_002942012.1 CDS Vapar_0083 NC_012791.1 81372 82073 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dac:Daci_0081 ABC transporter; ABC transporter complement(81372..82073) Variovorax paradoxus S110 7971617 YP_002942013.1 CDS Vapar_0084 NC_012791.1 82075 82821 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dac:Daci_0080 ABC transporter; ABC transporter complement(82075..82821) Variovorax paradoxus S110 7971619 YP_002942014.1 CDS Vapar_0085 NC_012791.1 82961 83935 R PFAM: inner-membrane translocator; KEGG: dac:Daci_0079 inner-membrane translocator; inner-membrane translocator complement(82961..83935) Variovorax paradoxus S110 7971620 YP_002942015.1 CDS Vapar_0086 NC_012791.1 83932 84804 R PFAM: inner-membrane translocator; KEGG: dac:Daci_0078 inner-membrane translocator; inner-membrane translocator complement(83932..84804) Variovorax paradoxus S110 7971621 YP_002942016.1 CDS Vapar_0087 NC_012791.1 84960 86144 R PFAM: extracellular ligand-binding receptor; KEGG: rfr:Rfer_0214 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(84960..86144) Variovorax paradoxus S110 7971622 YP_002942017.1 CDS Vapar_0088 NC_012791.1 86141 86944 R PFAM: alpha/beta hydrolase fold; KEGG: lch:Lcho_3654 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(86141..86944) Variovorax paradoxus S110 7971623 YP_002942018.1 CDS Vapar_0089 NC_012791.1 87084 88631 R TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_0730 benzoate-CoA ligase family; benzoate-CoA ligase family complement(87084..88631) Variovorax paradoxus S110 7971624 YP_002942019.1 CDS Vapar_0090 NC_012791.1 88660 90210 R PFAM: aldehyde dehydrogenase; KEGG: lch:Lcho_3656 aldehyde dehydrogenase; aldehyde dehydrogenase complement(88660..90210) Variovorax paradoxus S110 7971625 YP_002942020.1 CDS Vapar_0091 NC_012791.1 90207 90680 R KEGG: reh:H16_B1916 hypothetical protein; hypothetical protein complement(90207..90680) Variovorax paradoxus S110 7971626 YP_002942021.1 CDS Vapar_0092 NC_012791.1 90881 91831 D consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate; anaerobic benzoate catabolism transcriptional regulator 90881..91831 Variovorax paradoxus S110 7971627 YP_002942022.1 CDS Vapar_0093 NC_012791.1 91961 93637 D cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; benzoyl-CoA-dihydrodiol lyase 91961..93637 Variovorax paradoxus S110 7971628 YP_002942023.1 CDS Vapar_0094 NC_012791.1 93679 95106 D TIGRFAM: benzoyl-CoA oxygenase, subunit beta; KEGG: vei:Veis_0733 benzoyl-CoA oxygenase component B; benzoyl-CoA oxygenase subunit beta 93679..95106 Variovorax paradoxus S110 7971629 YP_002942024.1 CDS Vapar_0095 NC_012791.1 95235 96521 D TIGRFAM: benzoyl-CoA oxygenase/reductase, BoxA protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vei:Veis_0734 oxidoreductase FAD/NAD(P)-binding subunit; benzoyl-CoA oxygenase/reductase, BoxA protein 95235..96521 Variovorax paradoxus S110 7971630 YP_002942025.1 CDS Vapar_0096 NC_012791.1 96532 96975 D PFAM: MaoC domain protein dehydratase; KEGG: rfr:Rfer_0225 MaoC-like dehydratase; MaoC domain-containing protein dehydratase 96532..96975 Variovorax paradoxus S110 7971631 YP_002942026.1 CDS Vapar_0097 NC_012791.1 97027 97566 R KEGG: mgm:Mmc1_2179 outer membrane adhesin like proteiin; outer membrane adhesin-like protein complement(97027..97566) Variovorax paradoxus S110 7971632 YP_002942027.1 CDS Vapar_0098 NC_012791.1 97818 98279 D PFAM: protein of unknown function UPF0074; KEGG: swi:Swit_2165 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 97818..98279 Variovorax paradoxus S110 7971633 YP_002942028.1 CDS Vapar_0099 NC_012791.1 98269 99177 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mex:Mext_4049 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 98269..99177 Variovorax paradoxus S110 7971634 YP_002942029.1 CDS Vapar_0100 NC_012791.1 99370 100695 R KEGG: bpy:Bphyt_2380 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: Domain of unknown function DUF1969; fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetase complement(99370..100695) Variovorax paradoxus S110 7971636 YP_002942030.1 CDS Vapar_0101 NC_012791.1 100715 101521 R PFAM: cyclase family protein; KEGG: vei:Veis_0387 cyclase family protein; cyclase family protein complement(100715..101521) Variovorax paradoxus S110 7971637 YP_002942031.1 CDS Vapar_0102 NC_012791.1 101561 102352 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0386 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(101561..102352) Variovorax paradoxus S110 7971638 YP_002942032.1 CDS Vapar_0103 NC_012791.1 102349 103119 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0385 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(102349..103119) Variovorax paradoxus S110 7971639 YP_002942033.1 CDS Vapar_0104 NC_012791.1 103112 103894 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_0384 ABC transporter; ABC transporter complement(103112..103894) Variovorax paradoxus S110 7971640 YP_002942034.1 CDS Vapar_0105 NC_012791.1 103891 104835 R PFAM: NMT1/THI5 like domain protein; KEGG: vei:Veis_0383 NlpA lipoprotein; NMT1/THI5 like domain-containing protein complement(103891..104835) Variovorax paradoxus S110 7971641 YP_002942035.1 CDS Vapar_0106 NC_012791.1 104832 105560 R PFAM: regulatory protein TetR; KEGG: vei:Veis_0382 TetR family transcriptional regulator; TetR family transcriptional regulator complement(104832..105560) Variovorax paradoxus S110 7971642 YP_002942036.1 CDS Vapar_0107 NC_012791.1 105660 107675 D AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 105660..107675 Variovorax paradoxus S110 7971643 YP_002942037.1 CDS Vapar_0108 NC_012791.1 107654 109600 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sfu:Sfum_2802 adenylate/guanylate cyclase; adenylate/guanylate cyclase with integral membrane sensor complement(107654..109600) Variovorax paradoxus S110 7971644 YP_002942038.1 CDS Vapar_0109 NC_012791.1 109790 110503 R KEGG: bra:BRADO2589 hypothetical protein; hypothetical protein complement(109790..110503) Variovorax paradoxus S110 7971645 YP_002942039.1 CDS Vapar_0110 NC_012791.1 110587 111351 R KEGG: reh:H16_B0884 2-oxopent-4-enoate hydratase; 2-oxopent-4-enoate hydratase complement(110587..111351) Variovorax paradoxus S110 7971646 YP_002942040.1 CDS Vapar_0111 NC_012791.1 111348 112727 R PFAM: Amidase; KEGG: reh:H16_B0883 amidase; Amidase complement(111348..112727) Variovorax paradoxus S110 7971647 YP_002942041.1 CDS Vapar_0112 NC_012791.1 112753 114045 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_0558 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(112753..114045) Variovorax paradoxus S110 7971648 YP_002942042.1 CDS Vapar_0113 NC_012791.1 114042 114701 R PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pol:Bpro_0557 hypothetical protein; tripartite ATP-independent periplasmic transporter DctQ component complement(114042..114701) Variovorax paradoxus S110 7971649 YP_002942043.1 CDS Vapar_0114 NC_012791.1 114713 115795 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_0556 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(114713..115795) Variovorax paradoxus S110 7971650 YP_002942044.1 CDS Vapar_0115 NC_012791.1 115971 116810 R PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: reh:H16_B0879 transcriptional regulator, IclR-family; IclR family transcriptional regulator complement(115971..116810) Variovorax paradoxus S110 7971651 YP_002942045.1 CDS Vapar_0116 NC_012791.1 116995 117399 R PFAM: membrane protein of unknown function; KEGG: rfr:Rfer_2723 membrane protein of unknown function; hypothetical protein complement(116995..117399) Variovorax paradoxus S110 7971652 YP_002942046.1 CDS Vapar_0117 NC_012791.1 117462 118370 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rfr:Rfer_4071 LysR family transcriptional regulator; LysR family transcriptional regulator complement(117462..118370) Variovorax paradoxus S110 7971653 YP_002942047.1 CDS Vapar_0118 NC_012791.1 118547 119746 D PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: aav:Aave_1982 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein 118547..119746 Variovorax paradoxus S110 7971654 YP_002942048.1 CDS Vapar_0119 NC_012791.1 119758 120999 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_1735 formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F 119758..120999 Variovorax paradoxus S110 7971655 YP_002942049.1 CDS Vapar_0120 NC_012791.1 121015 121452 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_0144 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 121015..121452 Variovorax paradoxus S110 7971656 YP_002942050.1 CDS Vapar_0121 NC_012791.1 121449 121907 R KEGG: bxe:Bxe_A3337 hypothetical protein; hypothetical protein complement(121449..121907) Variovorax paradoxus S110 7971657 YP_002942051.1 CDS Vapar_0122 NC_012791.1 122006 122836 D KEGG: dac:Daci_4222 hypothetical protein; hypothetical protein 122006..122836 Variovorax paradoxus S110 7971658 YP_002942052.1 CDS Vapar_0123 NC_012791.1 122853 123431 D PFAM: uracil-DNA glycosylase superfamily; KEGG: reh:H16_B1845 uracil-dna glycosylase; uracil-DNA glycosylase superfamily protein 122853..123431 Variovorax paradoxus S110 7971659 YP_002942053.1 CDS Vapar_0124 NC_012791.1 123428 125101 R PFAM: amidohydrolase; KEGG: smt:Smal_2334 amidohydrolase 3; amidohydrolase complement(123428..125101) Variovorax paradoxus S110 7971660 YP_002942054.1 CDS Vapar_0125 NC_012791.1 125104 126099 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_0621 hypothetical protein; hypothetical protein complement(125104..126099) Variovorax paradoxus S110 7971661 YP_002942055.1 CDS Vapar_0126 NC_012791.1 126154 126516 R PFAM: cupin; KEGG: rme:Rmet_1908 cupin 2, conserved barrel; cupin complement(126154..126516) Variovorax paradoxus S110 7971662 YP_002942056.1 CDS Vapar_0127 NC_012791.1 126542 127540 R PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: reh:H16_B1796 NADPH:quinone reductase Zn-dependent oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein complement(126542..127540) Variovorax paradoxus S110 7971663 YP_002942057.1 CDS Vapar_0128 NC_012791.1 127913 128803 R PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B5853 3-keto-5-aminohexanoate cleavage enzyme; hypothetical protein complement(127913..128803) Variovorax paradoxus S110 7971664 YP_002942058.1 CDS Vapar_0129 NC_012791.1 128800 129564 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reu:Reut_B5854 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(128800..129564) Variovorax paradoxus S110 7971665 YP_002942059.1 CDS Vapar_0130 NC_012791.1 129585 130487 R PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: cti:RALTA_B1412 hydroxyquinol 1,2-dioxygenase; intradiol ring-cleavage dioxygenase complement(129585..130487) Variovorax paradoxus S110 7971666 YP_002942060.1 CDS Vapar_0131 NC_012791.1 130599 131630 D PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: reh:H16_B1792 transcriptional regulator, LacI-family; LacI family transcriptional regulator 130599..131630 Variovorax paradoxus S110 7971667 YP_002942061.1 CDS Vapar_0132 NC_012791.1 131631 133316 R KEGG: rpi:Rpic_3961 hypothetical protein; hypothetical protein complement(131631..133316) Variovorax paradoxus S110 7971668 YP_002942062.1 CDS Vapar_0133 NC_012791.1 133345 133536 R PFAM: protein of unknown function DUF1127; KEGG: mpt:Mpe_A1048 hypothetical protein; hypothetical protein complement(133345..133536) Variovorax paradoxus S110 7971669 YP_002942063.1 CDS Vapar_0134 NC_012791.1 133627 134517 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mpt:Mpe_A1047 LysR family transcriptional regulator; LysR family transcriptional regulator 133627..134517 Variovorax paradoxus S110 7971670 YP_002942064.1 CDS amiE NC_012791.1 134520 135554 R aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates; acylamide amidohydrolase complement(134520..135554) Variovorax paradoxus S110 7971671 YP_002942065.1 CDS Vapar_0136 NC_012791.1 135719 136219 R KEGG: rfr:Rfer_4043 hypothetical protein; hypothetical protein complement(135719..136219) Variovorax paradoxus S110 7971672 YP_002942066.1 CDS Vapar_0137 NC_012791.1 136286 137224 R PFAM: glutaminase, core; KEGG: sme:SMc00486 glutaminase; glutaminase complement(136286..137224) Variovorax paradoxus S110 7971673 YP_002942067.1 CDS Vapar_0138 NC_012791.1 137221 138120 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_0122 protein of unknown function DUF6, transmembrane; hypothetical protein complement(137221..138120) Variovorax paradoxus S110 7971674 YP_002942068.1 CDS Vapar_0139 NC_012791.1 138143 138625 R PFAM: transport-associated; KEGG: cvi:CV_3234 hypothetical protein; transport-associated complement(138143..138625) Variovorax paradoxus S110 7971675 YP_002942069.1 CDS Vapar_0140 NC_012791.1 138643 139152 R PFAM: flavin reductase domain protein FMN-binding; KEGG: pna:Pnap_0092 flavin reductase domain-containing protein; flavin reductase FMN-binding protein complement(138643..139152) Variovorax paradoxus S110 7971676 YP_002942070.1 CDS Vapar_0141 NC_012791.1 139259 140488 R PFAM: nucleoside recognition domain protein; KEGG: psa:PST_4050 hypothetical protein; nucleoside recognition domain-containing protein complement(139259..140488) Variovorax paradoxus S110 7971677 YP_002942071.1 CDS Vapar_0142 NC_012791.1 140567 142150 D PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: rpi:Rpic_4172 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 140567..142150 Variovorax paradoxus S110 7971678 YP_002942072.1 CDS Vapar_0143 NC_012791.1 142169 142975 R PFAM: metallophosphoesterase; KEGG: aav:Aave_0135 metallophosphoesterase; metallophosphoesterase complement(142169..142975) Variovorax paradoxus S110 7971679 YP_002942073.1 CDS Vapar_0144 NC_012791.1 143099 143272 D hypothetical protein 143099..143272 Variovorax paradoxus S110 7971680 YP_002942074.1 CDS Vapar_0145 NC_012791.1 143283 144263 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_0158 LysR family transcriptional regulator; LysR family transcriptional regulator complement(143283..144263) Variovorax paradoxus S110 7971681 YP_002942075.1 CDS Vapar_0146 NC_012791.1 144371 144919 D KEGG: pol:Bpro_0159 hypothetical protein; hypothetical protein 144371..144919 Variovorax paradoxus S110 7971682 YP_002942076.1 CDS Vapar_0147 NC_012791.1 145019 146881 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(145019..146881) Variovorax paradoxus S110 7971683 YP_002942077.1 CDS Vapar_0148 NC_012791.1 147027 147179 R KEGG: aav:Aave_0140 hypothetical protein; hypothetical protein complement(147027..147179) Variovorax paradoxus S110 7971684 YP_002942078.1 CDS Vapar_0149 NC_012791.1 147268 148497 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(147268..148497) Variovorax paradoxus S110 7971685 YP_002942079.1 CDS Vapar_0150 NC_012791.1 148605 150932 D PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: pna:Pnap_0112 ATPase central domain-containing protein; ATPase AAA 148605..150932 Variovorax paradoxus S110 7971686 YP_002942080.1 CDS Vapar_0151 NC_012791.1 151015 152607 D PFAM: peptidase S41; SMART: PDZ/DHR/GLGF domain protein; KEGG: afw:Anae109_2977 peptidase S41; peptidase S41 151015..152607 Variovorax paradoxus S110 7971687 YP_002942081.1 CDS Vapar_0152 NC_012791.1 152751 153929 D PFAM: inosine/uridine-preferring nucleoside hydrolase; KEGG: bpy:Bphyt_4926 inosine/uridine-preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 152751..153929 Variovorax paradoxus S110 7971688 YP_002942082.1 CDS Vapar_0153 NC_012791.1 153937 155838 R KEGG: ajs:Ajs_0084 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: HRDC domain protein; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; HRDC domain protein; ATP-dependent DNA helicase RecQ complement(153937..155838) Variovorax paradoxus S110 7971689 YP_002942083.1 CDS Vapar_0154 NC_012791.1 156128 157099 D KEGG: pol:Bpro_1047 extracellular solute-binding protein, family 3; extracellular solute-binding protein, family 3 156128..157099 Variovorax paradoxus S110 7971690 YP_002942084.1 CDS Vapar_0155 NC_012791.1 157080 157958 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1046 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 157080..157958 Variovorax paradoxus S110 7971691 YP_002942085.1 CDS Vapar_0156 NC_012791.1 157958 158740 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_1045 ABC transporter; ABC transporter 157958..158740 Variovorax paradoxus S110 7971692 YP_002942086.1 CDS Vapar_0157 NC_012791.1 158760 159497 D KEGG: aav:Aave_2966 histidine utilization repressor; TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family histidine utilization repressor 158760..159497 Variovorax paradoxus S110 7971693 YP_002942087.1 CDS Vapar_0158 NC_012791.1 159557 161110 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 159557..161110 Variovorax paradoxus S110 7971694 YP_002942088.1 CDS Vapar_0159 NC_012791.1 161135 162853 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 161135..162853 Variovorax paradoxus S110 7971695 YP_002942089.1 CDS Vapar_0160 NC_012791.1 162998 163732 D PFAM: regulatory protein IclR; transcriptional regulator IclR ; regulatory protein ArsR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein IclR; KEGG: pol:Bpro_1041 transcriptional regulator, IclR family; IclR family transcriptional regulator 162998..163732 Variovorax paradoxus S110 7971696 YP_002942090.1 CDS Vapar_0161 NC_012791.1 163786 164526 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: pol:Bpro_1040 extracellular solute-binding protein, family 3; family 3 extracellular solute-binding protein 163786..164526 Variovorax paradoxus S110 7971697 YP_002942091.1 CDS Vapar_0162 NC_012791.1 164637 165305 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1039 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane protein 164637..165305 Variovorax paradoxus S110 7971698 YP_002942092.1 CDS Vapar_0163 NC_012791.1 165302 165871 D PFAM: protein of unknown function DUF886; KEGG: pol:Bpro_1036 protein of unknown function DUF886; hypothetical protein 165302..165871 Variovorax paradoxus S110 7971699 YP_002942093.1 CDS Vapar_0164 NC_012791.1 165895 167145 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 165895..167145 Variovorax paradoxus S110 7969823 YP_002942094.1 CDS Vapar_0165 NC_012791.1 167142 168551 D catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 167142..168551 Variovorax paradoxus S110 7971374 YP_002942095.1 CDS Vapar_0166 NC_012791.1 168558 169373 D TIGRFAM: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase; KEGG: hypothetical protein; N-formylglutamate amidohydrolase 168558..169373 Variovorax paradoxus S110 7971375 YP_002942096.1 CDS Vapar_0167 NC_012791.1 169422 170468 D PFAM: homocysteine S-methyltransferase; KEGG: pna:Pnap_0115 homocysteine S-methyltransferase; homocysteine S-methyltransferase 169422..170468 Variovorax paradoxus S110 7971376 YP_002942097.1 CDS Vapar_0168 NC_012791.1 170553 171347 D PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; KEGG: bpy:Bphyt_2633 SH3 type 3 domain protein; SH3 type 3 domain-containing protein 170553..171347 Variovorax paradoxus S110 7971377 YP_002942098.1 CDS Vapar_0169 NC_012791.1 171348 172277 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dia:Dtpsy_0155 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(171348..172277) Variovorax paradoxus S110 7971378 YP_002942099.1 CDS Vapar_0170 NC_012791.1 172376 172837 D PFAM: transmembrane pair domain protein; KEGG: vei:Veis_1694 transmembrane pair domain-containing protein; transmembrane pair domain-containing protein 172376..172837 Variovorax paradoxus S110 7971379 YP_002942100.1 CDS Vapar_0171 NC_012791.1 173020 175770 D KEGG: aav:Aave_0214 methionine synthase (B12-dependent); TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region; methionine synthase 173020..175770 Variovorax paradoxus S110 7971380 YP_002942101.1 CDS Vapar_0172 NC_012791.1 175823 177631 D KEGG: cja:CJA_0124 hypothetical protein; hypothetical protein 175823..177631 Variovorax paradoxus S110 7971381 YP_002942102.1 CDS Vapar_0173 NC_012791.1 177628 178605 D PFAM: glycosyl transferase family 2; KEGG: ajs:Ajs_0549 glycosyl transferase family protein; family 2 glycosyl transferase 177628..178605 Variovorax paradoxus S110 7971382 YP_002942103.1 CDS Vapar_0174 NC_012791.1 178602 179009 D PFAM: GtrA family protein; KEGG: bph:Bphy_0865 GtrA family protein; GtrA family protein 178602..179009 Variovorax paradoxus S110 7971383 YP_002942104.1 CDS Vapar_0175 NC_012791.1 179022 180221 R PFAM: amidohydrolase; KEGG: pol:Bpro_4072 enamidase; amidohydrolase complement(179022..180221) Variovorax paradoxus S110 7971384 YP_002942105.1 CDS Vapar_0176 NC_012791.1 180226 181017 R PFAM: regulatory protein TetR; KEGG: vei:Veis_0851 TetR family transcriptional regulator; TetR family transcriptional regulator complement(180226..181017) Variovorax paradoxus S110 7971385 YP_002942106.1 CDS Vapar_0177 NC_012791.1 181035 181808 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: pna:Pnap_2736 ferredoxin--NADP(+) reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(181035..181808) Variovorax paradoxus S110 7971386 YP_002942107.1 CDS Vapar_0178 NC_012791.1 182133 183749 D KEGG: pol:Bpro_4068 6-hydroxynicotinate reductase; 6-hydroxynicotinate reductase 182133..183749 Variovorax paradoxus S110 7971387 YP_002942108.1 CDS Vapar_0179 NC_012791.1 183917 184834 D PFAM: ApbE family lipoprotein; KEGG: pol:Bpro_4067 hypothetical protein; hypothetical protein 183917..184834 Variovorax paradoxus S110 7971388 YP_002942109.1 CDS Vapar_0180 NC_012791.1 184856 185497 D PFAM: protein of unknown function DUF1185; KEGG: pol:Bpro_4066 protein of unknown function DUF1185; hypothetical protein 184856..185497 Variovorax paradoxus S110 7971389 YP_002942110.1 CDS Vapar_0181 NC_012791.1 185535 186119 D PFAM: protein of unknown function DUF1185; KEGG: pol:Bpro_4065 protein of unknown function DUF1185; hypothetical protein 185535..186119 Variovorax paradoxus S110 7971390 YP_002942111.1 CDS Vapar_0182 NC_012791.1 186193 187398 D PFAM: extracellular ligand-binding receptor; KEGG: pol:Bpro_4064 extracellular ligand-binding receptor; extracellular ligand-binding receptor 186193..187398 Variovorax paradoxus S110 7971391 YP_002942112.1 CDS Vapar_0183 NC_012791.1 187423 189351 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_4063 inner-membrane translocator; inner-membrane translocator 187423..189351 Variovorax paradoxus S110 7971392 YP_002942113.1 CDS Vapar_0184 NC_012791.1 189348 190085 D hypothetical protein 189348..190085 Variovorax paradoxus S110 7971393 YP_002942114.1 CDS Vapar_0185 NC_012791.1 190082 190888 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_4062 ABC transporter; ABC transporter 190082..190888 Variovorax paradoxus S110 7971394 YP_002942115.1 CDS Vapar_0186 NC_012791.1 190885 191619 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_4061 ABC transporter; ABC transporter 190885..191619 Variovorax paradoxus S110 7971395 YP_002942116.1 CDS Vapar_0187 NC_012791.1 191673 192395 D PFAM: isochorismatase hydrolase; KEGG: vei:Veis_0861 nicotinamidase; Nicotinamidase 191673..192395 Variovorax paradoxus S110 7971396 YP_002942117.1 CDS Vapar_0188 NC_012791.1 192461 193621 D PFAM: extracellular ligand-binding receptor; KEGG: pol:Bpro_4060 extracellular ligand-binding receptor; extracellular ligand-binding receptor 192461..193621 Variovorax paradoxus S110 7971397 YP_002942118.1 CDS Vapar_0189 NC_012791.1 193599 194102 D PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: ppf:Pput_1890 2Fe-2S iron-sulfur cluster binding domain-containing protein; (2Fe-2S)-binding domain-containing protein 193599..194102 Variovorax paradoxus S110 7971398 YP_002942119.1 CDS Vapar_0190 NC_012791.1 194236 197997 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pol:Bpro_4058 isoquinoline 1-oxidoreductase; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 194236..197997 Variovorax paradoxus S110 7971399 YP_002942120.1 CDS Vapar_0191 NC_012791.1 198109 199296 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_0733 hypothetical protein; fumarylacetoacetate (FAA) hydrolase 198109..199296 Variovorax paradoxus S110 7971400 YP_002942121.1 CDS Vapar_0192 NC_012791.1 199429 200520 D TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: bbr:BB0799 hypothetical protein; ImpA family type VI secretion-associated protein 199429..200520 Variovorax paradoxus S110 7971401 YP_002942122.1 CDS Vapar_0193 NC_012791.1 200601 201170 D TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: bpt:Bpet4117 hypothetical protein; type VI secretion protein 200601..201170 Variovorax paradoxus S110 7971402 YP_002942123.1 CDS Vapar_0194 NC_012791.1 201189 202697 D TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: spe:Spro_3004 hypothetical protein; EvpB family type VI secretion protein 201189..202697 Variovorax paradoxus S110 7971403 YP_002942124.1 CDS Vapar_0195 NC_012791.1 202747 203229 D PFAM: protein of unknown function DUF796; KEGG: bpa:BPP0716 hypothetical protein; hypothetical protein 202747..203229 Variovorax paradoxus S110 7971404 YP_002942125.1 CDS Vapar_0196 NC_012791.1 203343 204209 D PFAM: virulence protein SciE type; KEGG: bpt:Bpet4114 hypothetical protein; virulence protein SciE type 203343..204209 Variovorax paradoxus S110 7971405 YP_002942126.1 CDS Vapar_0197 NC_012791.1 204239 204766 D TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: bbr:BB0804 hypothetical protein; type VI secretion system lysozyme-like protein 204239..204766 Variovorax paradoxus S110 7971406 YP_002942127.1 CDS Vapar_0198 NC_012791.1 204767 206638 D TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bpt:Bpet4112 hypothetical protein; type VI secretion protein 204767..206638 Variovorax paradoxus S110 7971407 YP_002942128.1 CDS Vapar_0199 NC_012791.1 206635 207801 D TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: bpt:Bpet4110 hypothetical protein; type VI secretion protein 206635..207801 Variovorax paradoxus S110 7971408 YP_002942129.1 CDS Vapar_0200 NC_012791.1 207798 210524 D KEGG: bpt:Bpet4107 ATPase with chaperone activity; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; ATPase AAA; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; type VI secretion ATPase, ClpV1 family 207798..210524 Variovorax paradoxus S110 7971409 YP_002942130.1 CDS Vapar_0201 NC_012791.1 210545 212878 D TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: bbr:BB0793 hypothetical protein; type VI secretion system Vgr family protein 210545..212878 Variovorax paradoxus S110 7971410 YP_002942131.1 CDS Vapar_0202 NC_012791.1 213018 213347 D KEGG: bpa:BPP0708 hypothetical protein; hypothetical protein 213018..213347 Variovorax paradoxus S110 7971411 YP_002942132.1 CDS Vapar_0203 NC_012791.1 213347 216007 D PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein; pentapeptide repeat-containing protein 213347..216007 Variovorax paradoxus S110 7971412 YP_002942133.1 CDS Vapar_0204 NC_012791.1 216004 217080 D PFAM: pentapeptide repeat protein; KEGG: spe:Spro_4190 pentapeptide repeat-containing protein; pentapeptide repeat-containing protein 216004..217080 Variovorax paradoxus S110 7971413 YP_002942134.1 CDS Vapar_0205 NC_012791.1 217178 217798 D KEGG: bpt:Bpet4111 hypothetical protein; hypothetical protein 217178..217798 Variovorax paradoxus S110 7971414 YP_002942135.1 CDS Vapar_0206 NC_012791.1 217824 218210 D KEGG: spe:Spro_4188 hypothetical protein; hypothetical protein 217824..218210 Variovorax paradoxus S110 7971415 YP_002942136.1 CDS Vapar_0207 NC_012791.1 218230 219039 R SMART: protein phosphatase 2C domain protein; KEGG: esa:ESA_03927 hypothetical protein; protein serine/threonine phosphatase complement(218230..219039) Variovorax paradoxus S110 7971416 YP_002942137.1 CDS Vapar_0208 NC_012791.1 219032 220969 R TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: spe:Spro_3006 FHA domain-containing protein; FHA domain containing protein complement(219032..220969) Variovorax paradoxus S110 7971417 YP_002942138.1 CDS Vapar_0209 NC_012791.1 221013 221417 R KEGG: bur:Bcep18194_B1596 hypothetical protein; hypothetical protein complement(221013..221417) Variovorax paradoxus S110 7971418 YP_002942139.1 CDS Vapar_0210 NC_012791.1 221594 222064 D TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: bpt:Bpet4105 lipoprotein; type VI secretion lipoprotein 221594..222064 Variovorax paradoxus S110 7971419 YP_002942140.1 CDS Vapar_0211 NC_012791.1 222227 223603 D TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bpt:Bpet4104 hypothetical protein; type VI secretion protein 222227..223603 Variovorax paradoxus S110 7971420 YP_002942141.1 CDS Vapar_0212 NC_012791.1 223612 224994 D TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bps:BPSS2105 hypothetical protein; hypothetical protein 223612..224994 Variovorax paradoxus S110 7971421 YP_002942142.1 CDS Vapar_0213 NC_012791.1 224994 228629 D TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: bpt:Bpet4102 hypothetical protein; type VI secretion protein IcmF 224994..228629 Variovorax paradoxus S110 7971422 YP_002942143.1 CDS Vapar_0214 NC_012791.1 228631 229356 D TIGRFAM: type VI secretion-associated protein, BMA_A0400 family; KEGG: bpt:Bpet4101 hypothetical protein; type VI secretion-associated protein 228631..229356 Variovorax paradoxus S110 7971423 YP_002942144.1 CDS Vapar_0215 NC_012791.1 229388 231559 D PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: bur:Bcep18194_B1590 serine/threonine protein kinase; serine/threonine protein kinase 229388..231559 Variovorax paradoxus S110 7971424 YP_002942145.1 CDS Vapar_0216 NC_012791.1 231588 233141 R KEGG: aav:Aave_0231 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; Mg chelatase subunit ChlI complement(231588..233141) Variovorax paradoxus S110 7971425 YP_002942146.1 CDS Vapar_0217 NC_012791.1 233359 234183 D KEGG: dia:Dtpsy_0180 hypothetical protein; hypothetical protein 233359..234183 Variovorax paradoxus S110 7971426 YP_002942147.1 CDS Vapar_0218 NC_012791.1 234254 234592 D PFAM: nitrogen regulatory protein P-II; KEGG: pol:Bpro_0183 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 234254..234592 Variovorax paradoxus S110 7971427 YP_002942148.1 CDS Vapar_0219 NC_012791.1 234849 236147 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: mpt:Mpe_A0172 ammonium transporter transmembrane protein; ammonium transporter 234849..236147 Variovorax paradoxus S110 7971428 YP_002942149.1 CDS Vapar_0220 NC_012791.1 236419 237354 D PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: pna:Pnap_0122 SMP-30/gluconolaconase/LRE domain-containing protein; SMP-30/gluconolaconase/LRE domain-containing protein 236419..237354 Variovorax paradoxus S110 7971429 YP_002942150.1 CDS Vapar_0221 NC_012791.1 237698 238579 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: lch:Lcho_3308 LysR family transcriptional regulator; LysR family transcriptional regulator 237698..238579 Variovorax paradoxus S110 7971430 YP_002942151.1 CDS Vapar_0222 NC_012791.1 238713 240221 D PFAM: FAD linked oxidase; KEGG: aav:Aave_0645 FAD linked oxidase domain-containing protein; FAD linked oxidase 238713..240221 Variovorax paradoxus S110 7971431 YP_002942152.1 CDS Vapar_0223 NC_012791.1 240251 241357 D PFAM: FAD linked oxidase; KEGG: dac:Daci_0304 FAD linked oxidase domain-containing protein; FAD linked oxidase 240251..241357 Variovorax paradoxus S110 7971432 YP_002942153.1 CDS glcF NC_012791.1 241381 242613 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dia:Dtpsy_0186 protein of unknown function DUF224 cysteine-rich region domain protein; glycolate oxidase iron-sulfur subunit 241381..242613 Variovorax paradoxus S110 7971433 YP_002942154.1 CDS Vapar_0225 NC_012791.1 242703 243137 D KEGG: aav:Aave_2835 hypothetical protein; hypothetical protein 242703..243137 Variovorax paradoxus S110 7971434 YP_002942155.1 CDS Vapar_0226 NC_012791.1 243150 243641 R PFAM: glutathione peroxidase; KEGG: pna:Pnap_0128 glutathione peroxidase; peroxiredoxin complement(243150..243641) Variovorax paradoxus S110 7971435 YP_002942156.1 CDS Vapar_0227 NC_012791.1 243655 244545 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: rfr:Rfer_0486 hypothetical protein; hypothetical protein complement(243655..244545) Variovorax paradoxus S110 7971436 YP_002942157.1 CDS Vapar_0228 NC_012791.1 244661 245965 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 hypothetical protein; lysophospholipid transporter LplT complement(244661..245965) Variovorax paradoxus S110 7971437 YP_002942158.1 CDS Vapar_0229 NC_012791.1 246138 247238 D KEGG: pol:Bpro_0193 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 246138..247238 Variovorax paradoxus S110 7971438 YP_002942159.1 CDS Vapar_0230 NC_012791.1 247235 247969 D KEGG: pna:Pnap_0132 hypothetical protein; hypothetical protein 247235..247969 Variovorax paradoxus S110 7971439 YP_002942160.1 CDS Vapar_0231 NC_012791.1 247971 248867 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rfr:Rfer_3620 LysR family transcriptional regulator; LysR family transcriptional regulator complement(247971..248867) Variovorax paradoxus S110 7971440 YP_002942161.1 CDS Vapar_0232 NC_012791.1 248998 249954 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: rfr:Rfer_3621 hypothetical protein; hypothetical protein 248998..249954 Variovorax paradoxus S110 7971441 YP_002942162.1 CDS Vapar_0233 NC_012791.1 250019 250837 D KEGG: smt:Smal_0044 hypothetical protein; hypothetical protein 250019..250837 Variovorax paradoxus S110 7971442 YP_002942163.1 CDS Vapar_0234 NC_012791.1 250853 251830 R Ketopantoate reductase; catalyzes the NADPH reduction of Ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(250853..251830) Variovorax paradoxus S110 7971443 YP_002942164.1 CDS Vapar_0235 NC_012791.1 251832 252629 R PFAM: class II aldolase/adducin family protein; KEGG: bxe:Bxe_B1223 hypothetical protein; aldolase II superfamily protein complement(251832..252629) Variovorax paradoxus S110 7971444 YP_002942165.1 CDS Vapar_0236 NC_012791.1 252650 253639 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_2451 hypothetical protein; hypothetical protein complement(252650..253639) Variovorax paradoxus S110 7971445 YP_002942166.1 CDS Vapar_0237 NC_012791.1 253671 255407 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(253671..255407) Variovorax paradoxus S110 7971446 YP_002942167.1 CDS Vapar_0238 NC_012791.1 255450 255923 R PFAM: protein of unknown function DUF1486; KEGG: bcj:BCAM2778 exported cyclase; hypothetical protein complement(255450..255923) Variovorax paradoxus S110 7971447 YP_002942168.1 CDS Vapar_0239 NC_012791.1 255962 256783 R KEGG: rfr:Rfer_0941 2-dehydro-3-deoxyglucarate aldolase; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase complement(255962..256783) Variovorax paradoxus S110 7971448 YP_002942169.1 CDS Vapar_0240 NC_012791.1 256794 257597 R KEGG: bav:BAV1262 2-oxo-hept-3-ene-1,7-dioate hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: fumarylacetoacetate (FAA) hydrolase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase complement(256794..257597) Variovorax paradoxus S110 7971449 YP_002942170.1 CDS Vapar_0241 NC_012791.1 257602 258006 R PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: dac:Daci_0102 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase complement(257602..258006) Variovorax paradoxus S110 7971450 YP_002942171.1 CDS Vapar_0242 NC_012791.1 258018 258893 R KEGG: bpy:Bphyt_5827 3,4-dihydroxyphenylacetate 2,3-dioxygenase; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; 3,4-dihydroxyphenylacetate 2,3-dioxygenase complement(258018..258893) Variovorax paradoxus S110 7971451 YP_002942172.1 CDS Vapar_0243 NC_012791.1 258896 260356 R KEGG: bbr:BB0736 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase complement(258896..260356) Variovorax paradoxus S110 7971452 YP_002942173.1 CDS Vapar_0244 NC_012791.1 260353 261126 R KEGG: rpi:Rpic_1959 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 complement(260353..261126) Variovorax paradoxus S110 7971453 YP_002942174.1 CDS Vapar_0245 NC_012791.1 261123 261761 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rpi:Rpic_1960 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; fumarylacetoacetate (FAA) hydrolase complement(261123..261761) Variovorax paradoxus S110 7971454 YP_002942175.1 CDS Vapar_0246 NC_012791.1 261758 262192 R KEGG: bmj:BMULJ_04131 MarR family transcriptional regulator; TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator complement(261758..262192) Variovorax paradoxus S110 7972595 YP_002942176.1 CDS Vapar_0247 NC_012791.1 262373 262765 R KEGG: bxe:Bxe_B1284 hypothetical protein; hypothetical protein complement(262373..262765) Variovorax paradoxus S110 7972596 YP_002942177.1 CDS Vapar_0248 NC_012791.1 262832 267136 R TIGRFAM: hypothetical protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: xop:PXO_05538 rhs repeat family; hypothetical protein complement(262832..267136) Variovorax paradoxus S110 7972597 YP_002942178.1 CDS Vapar_0249 NC_012791.1 267179 268762 R KEGG: xoo:XOO1635 hypothetical protein; hypothetical protein complement(267179..268762) Variovorax paradoxus S110 7972598 YP_002942179.1 CDS Vapar_0250 NC_012791.1 268770 271154 R TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: bxe:Bxe_A4429 rhs element Vgr protein; type VI secretion system Vgr family protein complement(268770..271154) Variovorax paradoxus S110 7972599 YP_002942180.1 CDS Vapar_0251 NC_012791.1 271235 272623 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 271235..272623 Variovorax paradoxus S110 7972600 YP_002942181.1 CDS Vapar_0252 NC_012791.1 272860 273303 D KEGG: pol:Bpro_0202 hypothetical protein; hypothetical protein 272860..273303 Variovorax paradoxus S110 7972601 YP_002942182.1 CDS rdgC NC_012791.1 273331 274338 R Required for efficient pilin antigenic variation; recombination associated protein complement(273331..274338) Variovorax paradoxus S110 7972602 YP_002942183.1 CDS Vapar_0254 NC_012791.1 274470 275423 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 274470..275423 Variovorax paradoxus S110 7972603 YP_002942184.1 CDS Vapar_0255 NC_012791.1 275432 275641 D KEGG: aav:Aave_0265 hypothetical protein; hypothetical protein 275432..275641 Variovorax paradoxus S110 7972604 YP_002942185.1 CDS Vapar_0256 NC_012791.1 275638 276054 D hypothetical protein 275638..276054 Variovorax paradoxus S110 7972605 YP_002942186.1 CDS Vapar_0257 NC_012791.1 276055 277314 R PFAM: O-antigen polymerase; KEGG: har:HEAR0457 hypothetical protein; O-antigen polymerase complement(276055..277314) Variovorax paradoxus S110 7972606 YP_002942187.1 CDS Vapar_0258 NC_012791.1 277457 278653 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: aav:Aave_0274 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(277457..278653) Variovorax paradoxus S110 7972607 YP_002942188.1 CDS Vapar_0259 NC_012791.1 278661 279383 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rfr:Rfer_0510 two component transcriptional regulator; winged helix family two component transcriptional regulator complement(278661..279383) Variovorax paradoxus S110 7972608 YP_002942189.1 CDS Vapar_0260 NC_012791.1 279380 281086 R PFAM: monooxygenase FAD-binding; KEGG: har:HEAR2878 halogenase; FAD-binding monooxygenase complement(279380..281086) Variovorax paradoxus S110 7972609 YP_002942190.1 CDS Vapar_0261 NC_012791.1 281093 281941 R KEGG: xca:xccb100_4191 hypothetical protein; hypothetical protein complement(281093..281941) Variovorax paradoxus S110 7972610 YP_002942191.1 CDS Vapar_0262 NC_012791.1 282054 283256 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I complement(282054..283256) Variovorax paradoxus S110 7972611 YP_002942192.1 CDS Vapar_0263 NC_012791.1 283388 284776 R PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_0214 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(283388..284776) Variovorax paradoxus S110 7972612 YP_002942193.1 CDS Vapar_0264 NC_012791.1 284835 285701 D PFAM: peptidase M48 Ste24p; KEGG: aav:Aave_0280 peptidase M48, Ste24p; peptidase M48 Ste24p 284835..285701 Variovorax paradoxus S110 7972613 YP_002942194.1 CDS Vapar_0265 NC_012791.1 285894 287603 D TIGRFAM: allophanate hydrolase; PFAM: Amidase; KEGG: vei:Veis_0832 amidase; allophanate hydrolase 285894..287603 Variovorax paradoxus S110 7972614 YP_002942195.1 CDS Vapar_0266 NC_012791.1 287621 288625 D PFAM: NMT1/THI5 like domain protein; KEGG: vei:Veis_0833 ABC transporter substrate binding protein; NMT1/THI5 like domain-containing protein 287621..288625 Variovorax paradoxus S110 7972615 YP_002942196.1 CDS Vapar_0267 NC_012791.1 288628 289458 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0834 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 288628..289458 Variovorax paradoxus S110 7972616 YP_002942197.1 CDS Vapar_0268 NC_012791.1 289455 290288 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_0835 ABC transporter; ABC transporter 289455..290288 Variovorax paradoxus S110 7972617 YP_002942198.1 CDS Vapar_0269 NC_012791.1 290285 290665 D KEGG: bav:BAV2587 hypothetical protein; hypothetical protein 290285..290665 Variovorax paradoxus S110 7972618 YP_002942199.1 CDS Vapar_0270 NC_012791.1 290714 291832 D PFAM: basic membrane lipoprotein; KEGG: mpt:Mpe_A0769 bmp family protein; basic membrane lipoprotein 290714..291832 Variovorax paradoxus S110 7972619 YP_002942200.1 CDS Vapar_0271 NC_012791.1 291858 292919 D PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A0768 ABC transporter permease protein; inner-membrane translocator 291858..292919 Variovorax paradoxus S110 7972620 YP_002942201.1 CDS Vapar_0272 NC_012791.1 292916 293839 D PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A0767 inner-membrane translocator; inner-membrane translocator 292916..293839 Variovorax paradoxus S110 7972621 YP_002942202.1 CDS Vapar_0273 NC_012791.1 293845 294549 D PFAM: isochorismatase hydrolase; KEGG: mpt:Mpe_A0766 isochorismatase family protein; isochorismatase hydrolase 293845..294549 Variovorax paradoxus S110 7972622 YP_002942203.1 CDS Vapar_0274 NC_012791.1 294557 296155 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mpt:Mpe_A0765 ABC transporter; ABC transporter 294557..296155 Variovorax paradoxus S110 7972623 YP_002942204.1 CDS Vapar_0275 NC_012791.1 296436 297107 D PFAM: isochorismatase hydrolase; KEGG: bxe:Bxe_B1373 isochorismatase family protein; isochorismatase hydrolase 296436..297107 Variovorax paradoxus S110 7972624 YP_002942205.1 CDS Vapar_0276 NC_012791.1 297104 297868 D PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: vei:Veis_0841 GntR family transcriptional regulator; GntR family transcriptional regulator 297104..297868 Variovorax paradoxus S110 7972625 YP_002942206.1 CDS Vapar_0277 NC_012791.1 297883 298686 R KEGG: ajs:Ajs_0233 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(297883..298686) Variovorax paradoxus S110 7972626 YP_002942207.1 CDS pyrE NC_012791.1 298699 299382 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 298699..299382 Variovorax paradoxus S110 7972627 YP_002942208.1 CDS Vapar_0279 NC_012791.1 299393 300079 D KEGG: rfr:Rfer_3927 hypothetical protein; hypothetical protein 299393..300079 Variovorax paradoxus S110 7972628 YP_002942209.1 CDS Vapar_0280 NC_012791.1 300083 301513 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB/Yqey domain protein; GatB central domain protein; KEGG: dac:Daci_0351 glutamyl-tRNA(Gln) amidotransferase, subunit beta; glutamyl-tRNA(Gln) amidotransferase subunit B complement(300083..301513) Variovorax paradoxus S110 7972629 YP_002942210.1 CDS gatA NC_012791.1 301575 303062 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(301575..303062) Variovorax paradoxus S110 7972630 YP_002942211.1 CDS Vapar_0282 NC_012791.1 303059 303358 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; KEGG: aav:Aave_0293 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; glutamyl-tRNA(Gln) amidotransferase subunit C complement(303059..303358) Variovorax paradoxus S110 7972631 YP_002942212.1 CDS Vapar_0283 NC_012791.1 303574 304617 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 303574..304617 Variovorax paradoxus S110 7972632 YP_002942213.1 CDS Vapar_0284 NC_012791.1 304703 305683 D TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: pol:Bpro_0223 rod shape-determining protein MreC; rod shape-determining protein MreC 304703..305683 Variovorax paradoxus S110 7972633 YP_002942214.1 CDS Vapar_0285 NC_012791.1 305680 306201 D TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: pol:Bpro_0224 rod shape-determining MreD transmembrane protein; rod shape-determining protein MreD 305680..306201 Variovorax paradoxus S110 7972634 YP_002942215.1 CDS Vapar_0286 NC_012791.1 306258 308225 D KEGG: aav:Aave_0297 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 306258..308225 Variovorax paradoxus S110 7972635 YP_002942216.1 CDS Vapar_0287 NC_012791.1 308268 309542 R KEGG: aav:Aave_0256 fumarylacetoacetate hydrolase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase complement(308268..309542) Variovorax paradoxus S110 7972636 YP_002942217.1 CDS Vapar_0288 NC_012791.1 309568 310545 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_A2507 hypothetical protein; hypothetical protein complement(309568..310545) Variovorax paradoxus S110 7972637 YP_002942218.1 CDS Vapar_0289 NC_012791.1 310542 311855 R An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase complement(310542..311855) Variovorax paradoxus S110 7972638 YP_002942219.1 CDS Vapar_0290 NC_012791.1 311897 312091 R KEGG: pol:Bpro_4536 hypothetical protein; hypothetical protein complement(311897..312091) Variovorax paradoxus S110 7972639 YP_002942220.1 CDS Vapar_0291 NC_012791.1 312100 313737 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_4535 hypothetical protein; FAD-dependent oxidoreductase complement(312100..313737) Variovorax paradoxus S110 7972640 YP_002942221.1 CDS Vapar_0292 NC_012791.1 313876 314835 R PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4534 beta-lactamase-like; beta-lactamase domain-containing protein complement(313876..314835) Variovorax paradoxus S110 7972641 YP_002942222.1 CDS Vapar_0293 NC_012791.1 314980 315843 D PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: lch:Lcho_4298 IclR family transcriptional regulator; IclR family transcriptional regulator 314980..315843 Variovorax paradoxus S110 7972642 YP_002942223.1 CDS Vapar_0294 NC_012791.1 315840 316589 D PFAM: silent information regulator protein Sir2; KEGG: aeh:Mlg_2040 silent information regulator protein Sir2; silent information regulator protein Sir2 315840..316589 Variovorax paradoxus S110 7972643 YP_002942224.1 CDS Vapar_0295 NC_012791.1 316600 316821 R KEGG: har:HEAR0765 hypothetical protein; hypothetical protein complement(316600..316821) Variovorax paradoxus S110 7972644 YP_002942225.1 CDS Vapar_0296 NC_012791.1 316865 317548 R PFAM: protein of unknown function DUF330; KEGG: pol:Bpro_0233 lipoprotein; hypothetical protein complement(316865..317548) Variovorax paradoxus S110 7972645 YP_002942226.1 CDS Vapar_0297 NC_012791.1 317554 318525 R PFAM: hypothetical protein; KEGG: dia:Dtpsy_0246 mammalian cell entry related domain protein; hypothetical protein complement(317554..318525) Variovorax paradoxus S110 7972646 YP_002942227.1 CDS Vapar_0298 NC_012791.1 318540 319358 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_0231 ABC transporter; ABC transporter complement(318540..319358) Variovorax paradoxus S110 7972647 YP_002942228.1 CDS Vapar_0299 NC_012791.1 319355 320521 R PFAM: protein of unknown function DUF140; KEGG: dia:Dtpsy_0244 protein of unknown function DUF140; hypothetical protein complement(319355..320521) Variovorax paradoxus S110 7972648 YP_002942229.1 CDS Vapar_0300 NC_012791.1 320670 321575 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pna:Pnap_0181 LysR family transcriptional regulator; LysR family transcriptional regulator complement(320670..321575) Variovorax paradoxus S110 7972649 YP_002942230.1 CDS Vapar_0301 NC_012791.1 321714 323342 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pna:Pnap_0180 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 321714..323342 Variovorax paradoxus S110 7972650 YP_002942231.1 CDS Vapar_0302 NC_012791.1 323662 324738 R PFAM: extracellular solute-binding protein family 1; KEGG: rfr:Rfer_0883 extracellular solute-binding protein; family 1 extracellular solute-binding protein complement(323662..324738) Variovorax paradoxus S110 7972651 YP_002942232.1 CDS Vapar_0303 NC_012791.1 324751 325881 R PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_0884 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(324751..325881) Variovorax paradoxus S110 7972652 YP_002942233.1 CDS Vapar_0304 NC_012791.1 325878 327296 R PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_0885 BFD-like (2Fe-2S)-binding protein; BFD domain-containing protein (2Fe-2S)-binding domain-containing protein complement(325878..327296) Variovorax paradoxus S110 7972653 YP_002942234.1 CDS Vapar_0305 NC_012791.1 327293 327598 R KEGG: rfr:Rfer_0886 hypothetical protein; hypothetical protein complement(327293..327598) Variovorax paradoxus S110 7972654 YP_002942235.1 CDS Vapar_0306 NC_012791.1 327599 328393 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0887 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(327599..328393) Variovorax paradoxus S110 7972655 YP_002942236.1 CDS Vapar_0307 NC_012791.1 328398 329249 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0888 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(328398..329249) Variovorax paradoxus S110 7972656 YP_002942237.1 CDS Vapar_0308 NC_012791.1 329246 330316 R PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: rfr:Rfer_0889 ABC transporter; ABC transporter complement(329246..330316) Variovorax paradoxus S110 7972657 YP_002942238.1 CDS Vapar_0309 NC_012791.1 330521 331381 D PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: rfr:Rfer_0890 IclR family transcriptional regulator; IclR family transcriptional regulator 330521..331381 Variovorax paradoxus S110 7972658 YP_002942239.1 CDS Vapar_0310 NC_012791.1 331550 333088 D PFAM: aldehyde dehydrogenase; KEGG: rfr:Rfer_0880 aldehyde dehydrogenase; aldehyde dehydrogenase 331550..333088 Variovorax paradoxus S110 7972659 YP_002942240.1 CDS Vapar_0311 NC_012791.1 333183 334088 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dac:Daci_5673 extracellular solute-binding protein; family 3 extracellular solute-binding protein 333183..334088 Variovorax paradoxus S110 7972660 YP_002942241.1 CDS Vapar_0312 NC_012791.1 334085 335326 D PFAM: aminotransferase class I and II; KEGG: rfr:Rfer_0881 aminotransferase, class I and II; class I and II aminotransferase 334085..335326 Variovorax paradoxus S110 7972661 YP_002942242.1 CDS Vapar_0313 NC_012791.1 335346 337019 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rfr:Rfer_0882 acetolactate synthase 2 catalytic subunit; thiamine pyrophosphate protein 335346..337019 Variovorax paradoxus S110 7972662 YP_002942243.1 CDS Vapar_0314 NC_012791.1 337028 337327 R KEGG: pna:Pnap_0179 hypothetical protein; hypothetical protein complement(337028..337327) Variovorax paradoxus S110 7972663 YP_002942244.1 CDS Vapar_0315 NC_012791.1 337737 338495 D PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_0226 protein of unknown function DUF81; hypothetical protein 337737..338495 Variovorax paradoxus S110 7972664 YP_002942245.1 CDS Vapar_0316 NC_012791.1 338518 339861 D TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: mpt:Mpe_A2526 CHR transporter; chromate transporter 338518..339861 Variovorax paradoxus S110 7972665 YP_002942246.1 CDS Vapar_0317 NC_012791.1 339875 341386 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: pna:Pnap_3237 hypothetical protein; hypothetical protein complement(339875..341386) Variovorax paradoxus S110 7972666 YP_002942247.1 CDS Vapar_0318 NC_012791.1 341399 341887 R PFAM: protein of unknown function DUF1468; KEGG: aav:Aave_1069 hypothetical protein; hypothetical protein complement(341399..341887) Variovorax paradoxus S110 7972667 YP_002942248.1 CDS Vapar_0319 NC_012791.1 342070 342483 R PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: mpt:Mpe_A3805 RNA-binding region RNP-1; RNP-1 like RNA-binding protein complement(342070..342483) Variovorax paradoxus S110 7972668 YP_002942249.1 CDS Vapar_0320 NC_012791.1 342665 342898 R KEGG: dar:Daro_1138 hypothetical protein; hypothetical protein complement(342665..342898) Variovorax paradoxus S110 7972669 YP_002942250.1 CDS Vapar_0321 NC_012791.1 342904 343278 R TIGRFAM: translation initiation factor SUI1; PFAM: translation initiation factor SUI1; KEGG: pol:Bpro_2734 translation initiation factor 1 (eIF-1/SUI1); translation initiation factor SUI1 complement(342904..343278) Variovorax paradoxus S110 7972670 YP_002942251.1 CDS Vapar_0322 NC_012791.1 343335 344609 D PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: pna:Pnap_2407 DEAD/DEAH box helicase domain-containing protein; DEAD/DEAH box helicase domain-containing protein 343335..344609 Variovorax paradoxus S110 7972671 YP_002942252.1 CDS Vapar_0323 NC_012791.1 344634 345386 R PFAM: band 7 protein; SMART: band 7 protein; KEGG: pol:Bpro_3547 SPFH domain, band 7 family protein; hypothetical protein complement(344634..345386) Variovorax paradoxus S110 7972672 YP_002942253.1 CDS Vapar_0324 NC_012791.1 345477 346637 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_1896 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein complement(345477..346637) Variovorax paradoxus S110 7972673 YP_002942254.1 CDS Vapar_0325 NC_012791.1 346652 347566 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_3507 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(346652..347566) Variovorax paradoxus S110 7972674 YP_002942255.1 CDS Vapar_0326 NC_012791.1 347610 349559 R PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: rpc:RPC_3200 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain ATP-binding complement(347610..349559) Variovorax paradoxus S110 7972675 YP_002942256.1 CDS Vapar_0327 NC_012791.1 349556 351166 R PFAM: carboxyl transferase; KEGG: rpe:RPE_2254 propionyl-CoA carboxylase; methylcrotonoyl-CoA carboxylase complement(349556..351166) Variovorax paradoxus S110 7973471 YP_002942257.1 CDS Vapar_0328 NC_012791.1 351239 352009 R PFAM: MHYT domain protein; KEGG: bbr:BB1820 hypothetical protein; integral membrane sensor protein complement(351239..352009) Variovorax paradoxus S110 7973472 YP_002942258.1 CDS Vapar_0329 NC_012791.1 352158 353819 R PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: rpa:RPA4432 NHL repeat-containing protein; SMP-30/gluconolaconase/LRE domain-containing protein complement(352158..353819) Variovorax paradoxus S110 7973473 YP_002942259.1 CDS Vapar_0330 NC_012791.1 353920 355143 R PFAM: protein of unknown function DUF445; KEGG: psa:PST_2930 predicted membrane protein; hypothetical protein complement(353920..355143) Variovorax paradoxus S110 7973474 YP_002942260.1 CDS Vapar_0331 NC_012791.1 355175 356341 R TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aav:Aave_0769 acetylornithine deacetylase; acetylornithine deacetylase ArgE complement(355175..356341) Variovorax paradoxus S110 7973475 YP_002942261.1 CDS Vapar_0332 NC_012791.1 356442 357629 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pol:Bpro_3128 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 356442..357629 Variovorax paradoxus S110 7973476 YP_002942262.1 CDS Vapar_0333 NC_012791.1 357696 358901 D KEGG: pol:Bpro_2111 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 357696..358901 Variovorax paradoxus S110 7973477 YP_002942263.1 CDS Vapar_0334 NC_012791.1 358898 359992 D KEGG: aav:Aave_0771 hypothetical protein; hypothetical protein 358898..359992 Variovorax paradoxus S110 7973478 YP_002942264.1 CDS Vapar_0335 NC_012791.1 359989 361113 R PFAM: extracellular ligand-binding receptor; KEGG: vei:Veis_4876 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(359989..361113) Variovorax paradoxus S110 7973479 YP_002942265.1 CDS Vapar_0336 NC_012791.1 361171 363258 D PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: pol:Bpro_4032 molybdopterin oxidoreductase; molybdopterin oxidoreductase 361171..363258 Variovorax paradoxus S110 7973480 YP_002942266.1 CDS Vapar_0337 NC_012791.1 363255 364409 D KEGG: pna:Pnap_3501 zinc protease protein; zinc protease protein 363255..364409 Variovorax paradoxus S110 7973481 YP_002942267.1 CDS Vapar_0338 NC_012791.1 364402 364719 D TIGRFAM: polyhydroxyalkanoic acid system protein; KEGG: pna:Pnap_3503 polyhydroxyalkanoic acid system protein; polyhydroxyalkanoic acid system protein 364402..364719 Variovorax paradoxus S110 7973482 YP_002942268.1 CDS Vapar_0339 NC_012791.1 364732 365469 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bcj:BCAM2013 short chain dehydrogenase; short chain dehydrogenase complement(364732..365469) Variovorax paradoxus S110 7973483 YP_002942269.1 CDS Vapar_0340 NC_012791.1 365789 367315 R PFAM: carbohydrate kinase FGGY; KEGG: bam:Bamb_4197 xylulokinase; Xylulokinase complement(365789..367315) Variovorax paradoxus S110 7973484 YP_002942270.1 CDS Vapar_0341 NC_012791.1 367312 368451 R PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: bpy:Bphyt_3233 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase GroES domain-containing protein complement(367312..368451) Variovorax paradoxus S110 7973485 YP_002942271.1 CDS Vapar_0342 NC_012791.1 368600 369580 R PFAM: inner-membrane translocator; KEGG: bac:BamMC406_4722 monosaccharide-transporting ATPase; inner-membrane translocator complement(368600..369580) Variovorax paradoxus S110 7973486 YP_002942272.1 CDS Vapar_0343 NC_012791.1 369906 371399 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bph:Bphy_0501 ABC transporter; ABC transporter complement(369906..371399) Variovorax paradoxus S110 7973487 YP_002942273.1 CDS Vapar_0344 NC_012791.1 371439 372359 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bpy:Bphyt_3236 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(371439..372359) Variovorax paradoxus S110 7973488 YP_002942274.1 CDS Vapar_0345 NC_012791.1 372472 373362 R PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bpy:Bphyt_3237 AraC family transcriptional regulator; AraC family transcriptional regulator complement(372472..373362) Variovorax paradoxus S110 7973489 YP_002942275.1 CDS Vapar_0346 NC_012791.1 373642 374880 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pna:Pnap_3505 formyl-CoA transferase; Formyl-CoA transferase 373642..374880 Variovorax paradoxus S110 7973490 YP_002942276.1 CDS Vapar_0347 NC_012791.1 374891 375148 R PFAM: acyl-coA-binding protein ACBP; KEGG: dia:Dtpsy_0446 acyl-coA-binding protein ACBP; acyl-coA-binding protein ACBP complement(374891..375148) Variovorax paradoxus S110 7973491 YP_002942277.1 CDS Vapar_0348 NC_012791.1 375219 376061 R KEGG: pna:Pnap_3497 hypothetical protein; hypothetical protein complement(375219..376061) Variovorax paradoxus S110 7973492 YP_002942278.1 CDS Vapar_0349 NC_012791.1 376066 376779 R PFAM: regulatory protein TetR; KEGG: rfr:Rfer_3529 TetR family transcriptional regulator; TetR family transcriptional regulator complement(376066..376779) Variovorax paradoxus S110 7973493 YP_002942279.1 CDS Vapar_0350 NC_012791.1 376908 377411 R TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated; poly(hydroxyalkanoate) granule-associated protein complement(376908..377411) Variovorax paradoxus S110 7973494 YP_002942280.1 CDS Vapar_0351 NC_012791.1 377501 377944 R PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_4578 thioesterase superfamily; thioesterase superfamily protein complement(377501..377944) Variovorax paradoxus S110 7973495 YP_002942281.1 CDS Vapar_0352 NC_012791.1 378039 378938 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo2419 LysR-type transcriptional regulator NahR; LysR family transcriptional regulator complement(378039..378938) Variovorax paradoxus S110 7973496 YP_002942282.1 CDS Vapar_0353 NC_012791.1 379084 380172 D TIGRFAM: gentisate 1,2-dioxygenase; PFAM: Cupin 2 conserved barrel domain protein; KEGG: pae:PA2470 gentisate 1,2-dioxygenase; gentisate 1,2-dioxygenase 379084..380172 Variovorax paradoxus S110 7973497 YP_002942283.1 CDS Vapar_0354 NC_012791.1 380248 380952 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rso:RSc1086 isomerase-decarboxylase; fumarylacetoacetate (FAA) hydrolase 380248..380952 Variovorax paradoxus S110 7973498 YP_002942284.1 CDS Vapar_0355 NC_012791.1 380978 382261 D catalyzes the formation of catechol from salicylate; salicylate hydroxylase 380978..382261 Variovorax paradoxus S110 7973499 YP_002942285.1 CDS Vapar_0356 NC_012791.1 382321 383310 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_3148 hypothetical protein; hypothetical protein 382321..383310 Variovorax paradoxus S110 7973500 YP_002942286.1 CDS Vapar_0357 NC_012791.1 383358 384335 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2127 uncharacterized protein UPF0065; hypothetical protein 383358..384335 Variovorax paradoxus S110 7973501 YP_002942287.1 CDS Vapar_0358 NC_012791.1 384335 385696 D PFAM: FAD dependent oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_2126 fumarate reductase/succinate dehydrogenase flavoprotein-like; FAD dependent oxidoreductase 384335..385696 Variovorax paradoxus S110 7973502 YP_002942288.1 CDS Vapar_0359 NC_012791.1 385793 386671 D PFAM: acyl-CoA thioesterase; KEGG: rfr:Rfer_0997 palmitoyl-CoA hydrolase; Choloyl-CoA hydrolase 385793..386671 Variovorax paradoxus S110 7973503 YP_002942289.1 CDS Vapar_0360 NC_012791.1 387034 387747 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sme:SMc00136 oxidoreductase protein; short-chain dehydrogenase/reductase SDR 387034..387747 Variovorax paradoxus S110 7973504 YP_002942290.1 CDS Vapar_0361 NC_012791.1 387793 388401 D PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: rle:pRL120768 hypothetical protein; type 12 methyltransferase 387793..388401 Variovorax paradoxus S110 7973505 YP_002942291.1 CDS Vapar_0362 NC_012791.1 388413 389144 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azo:azo1128 ABC transporter ATP-binding protein; ABC transporter complement(388413..389144) Variovorax paradoxus S110 7973506 YP_002942292.1 CDS Vapar_0363 NC_012791.1 389141 389896 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azo:azo1127 ABC transporter ATP-binding protein; ABC transporter complement(389141..389896) Variovorax paradoxus S110 7973507 YP_002942293.1 CDS Vapar_0364 NC_012791.1 389893 390876 R PFAM: inner-membrane translocator; KEGG: bpt:Bpet3756 branched chain amino acid ABC transporter permease; inner-membrane translocator complement(389893..390876) Variovorax paradoxus S110 7973508 YP_002942294.1 CDS Vapar_0365 NC_012791.1 390873 391793 R PFAM: inner-membrane translocator; KEGG: azo:azo1125 ABC transporter permease protein; ABC transporter permease complement(390873..391793) Variovorax paradoxus S110 7973509 YP_002942295.1 CDS Vapar_0366 NC_012791.1 391790 392995 R PFAM: extracellular ligand-binding receptor; KEGG: bpt:Bpet0544 ABC transporter substrate binding protein; ABC transporter substrate-binding protein complement(391790..392995) Variovorax paradoxus S110 7973510 YP_002942296.1 CDS Vapar_0367 NC_012791.1 393190 393429 R TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: mms:mma_3632 F0F1 ATP synthase subunit C; ATP synthase F0 C subunit complement(393190..393429) Variovorax paradoxus S110 7973511 YP_002942297.1 CDS Vapar_0368 NC_012791.1 393725 398458 R PFAM: ricin B lectin; PKD domain containing protein; SMART: ricin B lectin; PKD domain containing protein; KEGG: scl:sce8906 hypothetical protein; ricin B lectin complement(393725..398458) Variovorax paradoxus S110 7973512 YP_002942298.1 CDS Vapar_0369 NC_012791.1 398584 399435 R PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: oan:Oant_3078 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase complement(398584..399435) Variovorax paradoxus S110 7973513 YP_002942299.1 CDS Vapar_0370 NC_012791.1 399481 400467 R PFAM: aldo/keto reductase; KEGG: sme:SM_b20500 aldoketo reductase protein; aldo/keto reductase complement(399481..400467) Variovorax paradoxus S110 7973514 YP_002942300.1 CDS Vapar_0371 NC_012791.1 400464 401480 R PFAM: inner-membrane translocator; KEGG: rle:pRL120758 permease component of ABC transporter; inner-membrane translocator complement(400464..401480) Variovorax paradoxus S110 7973515 YP_002942301.1 CDS Vapar_0372 NC_012791.1 401477 403006 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_PB00077 sugar ABC transporter ATP-binding protein; ABC transporter complement(401477..403006) Variovorax paradoxus S110 7973516 YP_002942302.1 CDS Vapar_0373 NC_012791.1 403003 404043 R KEGG: ara:Arad_8598 sugar ABC transporter; sugar ABC transporter complement(403003..404043) Variovorax paradoxus S110 7973517 YP_002942303.1 CDS Vapar_0374 NC_012791.1 404223 405710 D PFAM: carbohydrate kinase FGGY; KEGG: ret:RHE_PB00071 L-xylulose kinase protein; carbohydrate kinase FGGY 404223..405710 Variovorax paradoxus S110 7973518 YP_002942304.1 CDS Vapar_0375 NC_012791.1 405707 407470 D PFAM: FAD dependent oxidoreductase; KEGG: oan:Oant_2918 FAD dependent oxidoreductase; FAD dependent oxidoreductase 405707..407470 Variovorax paradoxus S110 7973519 YP_002942305.1 CDS Vapar_0376 NC_012791.1 407473 408231 D PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rsk:RSKD131_4320 GntR family transcriptional regulator; GntR family transcriptional regulator 407473..408231 Variovorax paradoxus S110 7973520 YP_002942306.1 CDS Vapar_0377 NC_012791.1 408240 409130 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_4618 protein of unknown function DUF6, transmembrane; hypothetical protein complement(408240..409130) Variovorax paradoxus S110 7973521 YP_002942307.1 CDS Vapar_0378 NC_012791.1 409182 412325 R TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter; KEGG: pol:Bpro_4568 excinuclease ABC subunit A; excinuclease ABC subunit A complement(409182..412325) Variovorax paradoxus S110 7973522 YP_002942308.1 CDS Vapar_0379 NC_012791.1 412488 413042 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: aav:Aave_4713 single-strand binding protein; single-strand binding protein 412488..413042 Variovorax paradoxus S110 7973523 YP_002942309.1 CDS Vapar_0380 NC_012791.1 413101 415074 D PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rso:RSc3160 two component sensor histidine kinase transcription regulator protein; histidine kinase 413101..415074 Variovorax paradoxus S110 7973524 YP_002942310.1 CDS Vapar_0381 NC_012791.1 415087 415527 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bid:Bind_2367 glutathione-dependent formaldehyde-activating GFA; glutathione-dependent formaldehyde-activating protein complement(415087..415527) Variovorax paradoxus S110 7973525 YP_002942311.1 CDS Vapar_0382 NC_012791.1 415546 416259 R PFAM: protein of unknown function DUF28; KEGG: pna:Pnap_3561 hypothetical protein; hypothetical protein complement(415546..416259) Variovorax paradoxus S110 7973526 YP_002942312.1 CDS Vapar_0383 NC_012791.1 416615 416995 D KEGG: SNF2 superfamily protein; SNF2 superfamily protein 416615..416995 Variovorax paradoxus S110 7973527 YP_002942313.1 CDS Vapar_0384 NC_012791.1 417202 417345 D hypothetical protein 417202..417345 Variovorax paradoxus S110 7973528 YP_002942314.1 CDS Vapar_0385 NC_012791.1 417357 417956 D KEGG: mpo:Mpop_0843 hypothetical protein; hypothetical protein 417357..417956 Variovorax paradoxus S110 7973529 YP_002942315.1 CDS Vapar_0386 NC_012791.1 418036 419022 D PFAM: Luciferase-like monooxygenase; KEGG: rfr:Rfer_3316 luciferase-like; Luciferase-like monooxygenase 418036..419022 Variovorax paradoxus S110 7973530 YP_002942316.1 CDS mnmA NC_012791.1 419072 420181 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 419072..420181 Variovorax paradoxus S110 7973531 YP_002942317.1 CDS Vapar_0388 NC_012791.1 420209 420688 R PFAM: NUDIX hydrolase; KEGG: aav:Aave_4725 NUDIX hydrolase; NUDIX hydrolase complement(420209..420688) Variovorax paradoxus S110 7973532 YP_002942318.1 CDS Vapar_0389 NC_012791.1 420712 421146 R KEGG: sml:Smlt1455 hypothetical protein; hypothetical protein complement(420712..421146) Variovorax paradoxus S110 7973533 YP_002942319.1 CDS Vapar_0390 NC_012791.1 421232 421945 R PFAM: transcriptional regulator domain protein; response regulator receiver; SMART: response regulator receiver; KEGG: dac:Daci_5416 two component transcriptional regulator; winged helix family two component transcriptional regulator complement(421232..421945) Variovorax paradoxus S110 7973534 YP_002942320.1 CDS Vapar_0391 NC_012791.1 422363 423493 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: vei:Veis_4748 NAD(P)(+) transhydrogenase (AB-specific); NAD(P)(+) transhydrogenase 422363..423493 Variovorax paradoxus S110 7973535 YP_002942321.1 CDS Vapar_0392 NC_012791.1 423526 423855 D KEGG: pna:Pnap_3799 NAD(P) transhydrogenase, subunit alpha part 2; NAD(P) transhydrogenase subunit alpha part 2 423526..423855 Variovorax paradoxus S110 7973536 YP_002942322.1 CDS Vapar_0393 NC_012791.1 423852 425279 D PFAM: NAD(P) transhydrogenase subunit beta; KEGG: lch:Lcho_0425 NAD(P)(+) transhydrogenase (AB-specific); NAD(P)(+) transhydrogenase 423852..425279 Variovorax paradoxus S110 7973537 YP_002942323.1 CDS Vapar_0394 NC_012791.1 425381 427060 D PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4543 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 425381..427060 Variovorax paradoxus S110 7973538 YP_002942324.1 CDS Vapar_0395 NC_012791.1 427111 428115 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2812 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 427111..428115 Variovorax paradoxus S110 7973539 YP_002942325.1 CDS Vapar_0396 NC_012791.1 428124 429035 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2813 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 428124..429035 Variovorax paradoxus S110 7973540 YP_002942326.1 CDS Vapar_0397 NC_012791.1 429032 430069 D KEGG: pol:Bpro_2814 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 429032..430069 Variovorax paradoxus S110 7973541 YP_002942327.1 CDS dppF NC_012791.1 430066 431112 D Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 430066..431112 Variovorax paradoxus S110 7973542 YP_002942328.1 CDS Vapar_0399 NC_012791.1 431143 432783 D PFAM: extracellular solute-binding protein family 5; KEGG: pol:Bpro_2816 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 431143..432783 Variovorax paradoxus S110 7973543 YP_002942329.1 CDS Vapar_0400 NC_012791.1 432787 433569 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 432787..433569 Variovorax paradoxus S110 7973544 YP_002942330.1 CDS Vapar_0401 NC_012791.1 433562 434548 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: pol:Bpro_4615 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(433562..434548) Variovorax paradoxus S110 7973545 YP_002942331.1 CDS Vapar_0402 NC_012791.1 434761 436899 D PFAM: UvrD/REP helicase; KEGG: bpe:BP1980 ATP-dependent DNA helicase; UvrD/REP helicase 434761..436899 Variovorax paradoxus S110 7973546 YP_002942332.1 CDS Vapar_0403 NC_012791.1 437216 437545 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: vei:Veis_0600 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA 437216..437545 Variovorax paradoxus S110 7973547 YP_002942333.1 CDS Vapar_0404 NC_012791.1 437730 438197 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: aav:Aave_4557 PTS IIA-like nitrogen-regulatory protein PtsN; PTS IIA-like nitrogen-regulatory protein PtsN 437730..438197 Variovorax paradoxus S110 7973548 YP_002942334.1 CDS Vapar_0405 NC_012791.1 438292 439251 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 438292..439251 Variovorax paradoxus S110 7973549 YP_002942335.1 CDS Vapar_0406 NC_012791.1 439256 439675 R PFAM: ferric-uptake regulator; KEGG: dac:Daci_6009 ferric uptake regulator family protein; Fur family ferric uptake regulator complement(439256..439675) Variovorax paradoxus S110 7973550 YP_002942336.1 CDS Vapar_0407 NC_012791.1 439767 440327 D PFAM: SmpA/OmlA domain protein; KEGG: dac:Daci_6008 SmpA/OmlA domain-containing protein; SmpA/OmlA domain-containing protein 439767..440327 Variovorax paradoxus S110 7973551 YP_002942337.1 CDS Vapar_0408 NC_012791.1 440508 441272 D KEGG: pol:Bpro_4608 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 440508..441272 Variovorax paradoxus S110 7972679 YP_002942338.1 CDS Vapar_0409 NC_012791.1 441280 441987 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: rfr:Rfer_0756 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 441280..441987 Variovorax paradoxus S110 7970150 YP_002942339.1 CDS Vapar_0410 NC_012791.1 442008 442478 D PFAM: biopolymertransporter ExbD/TolR; KEGG: pna:Pnap_3787 biopolymer transport protein ExbD/TolR; biopolymertransporter ExbD/TolR 442008..442478 Variovorax paradoxus S110 7970151 YP_002942340.1 CDS Vapar_0411 NC_012791.1 442615 445098 R KEGG: lch:Lcho_1891 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase complement(442615..445098) Variovorax paradoxus S110 7970152 YP_002942341.1 CDS Vapar_0412 NC_012791.1 445144 446631 R KEGG: tmz:Tmz1t_2043 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; glycogen/starch synthase, ADP-glucose type complement(445144..446631) Variovorax paradoxus S110 7970153 YP_002942342.1 CDS Vapar_0413 NC_012791.1 446649 447965 R TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase; KEGG: lch:Lcho_1889 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase complement(446649..447965) Variovorax paradoxus S110 7970154 YP_002942343.1 CDS Vapar_0414 NC_012791.1 448060 450141 R KEGG: lch:Lcho_1887 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX complement(448060..450141) Variovorax paradoxus S110 7970155 YP_002942344.1 CDS Vapar_0415 NC_012791.1 450146 452317 R KEGG: lch:Lcho_3321 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching protein complement(450146..452317) Variovorax paradoxus S110 7970156 YP_002942345.1 CDS Vapar_0416 NC_012791.1 452326 453999 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: hch:HCH_00480 glycosidase; alpha amylase catalytic subunit complement(452326..453999) Variovorax paradoxus S110 7970157 YP_002942346.1 CDS Vapar_0417 NC_012791.1 454141 455616 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: aav:Aave_4505 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 454141..455616 Variovorax paradoxus S110 7970158 YP_002942347.1 CDS Vapar_0418 NC_012791.1 455642 456163 D KEGG: cti:RALTA_A1512 conserved hypothetical protein, COG4950; hypothetical protein 455642..456163 Variovorax paradoxus S110 7970159 YP_002942348.1 CDS Vapar_0419 NC_012791.1 456160 456774 D TIGRFAM: uncharacterized peroxidase-related enzyme; PFAM: carboxymuconolactone decarboxylase; KEGG: bav:BAV1556 hypothetical protein; peroxidase-like protein 456160..456774 Variovorax paradoxus S110 7970160 YP_002942349.1 CDS Vapar_0420 NC_012791.1 456769 457848 R PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: ppu:PP_4452 NAD/NADP octopine/nopaline dehydrogenase family protein; NAD/NADP octopine/nopaline dehydrogenase complement(456769..457848) Variovorax paradoxus S110 7970161 YP_002942350.1 CDS Vapar_0421 NC_012791.1 457841 458854 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_1562 hypothetical protein; hypothetical protein complement(457841..458854) Variovorax paradoxus S110 7970162 YP_002942351.1 CDS Vapar_0422 NC_012791.1 459022 461652 D TIGRFAM: leucyl-tRNA synthetase; KEGG: aav:Aave_4548 leucyl-tRNA synthetase; leucyl-tRNA synthetase 459022..461652 Variovorax paradoxus S110 7970163 YP_002942352.1 CDS Vapar_0423 NC_012791.1 461673 462194 D PFAM: Rare lipoprotein B; KEGG: pol:Bpro_4604 rare lipoprotein B; Rare lipoprotein B 461673..462194 Variovorax paradoxus S110 7970164 YP_002942353.1 CDS holA NC_012791.1 462199 463284 D required for the assembly and function of the DNAX complex which is required for the assembly of the subunit beta onto primed DNA; DNA polymerase III subunit delta 462199..463284 Variovorax paradoxus S110 7970165 YP_002942354.1 CDS proA NC_012791.1 463401 464714 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 463401..464714 Variovorax paradoxus S110 7970166 YP_002942355.1 CDS Vapar_0426 NC_012791.1 464836 466146 D TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: dia:Dtpsy_3259 glutamate/cysteine ligase; glutamate/cysteine ligase 464836..466146 Variovorax paradoxus S110 7970167 YP_002942356.1 CDS Vapar_0427 NC_012791.1 466273 468192 D PFAM: K potassium transporter; KEGG: pna:Pnap_3749 K+ potassium transporter; K potassium transporter 466273..468192 Variovorax paradoxus S110 7970168 YP_002942357.1 CDS Vapar_0428 NC_012791.1 468238 469005 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_1052 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(468238..469005) Variovorax paradoxus S110 7970169 YP_002942358.1 CDS Vapar_0429 NC_012791.1 469063 469986 R PFAM: polysaccharide deacetylase; KEGG: vei:Veis_3554 hypothetical protein; polysaccharide deacetylase complement(469063..469986) Variovorax paradoxus S110 7970170 YP_002942359.1 CDS Vapar_0430 NC_012791.1 469997 470437 R KEGG: rpb:RPB_2080 hypothetical protein; hypothetical protein complement(469997..470437) Variovorax paradoxus S110 7970171 YP_002942360.1 CDS Vapar_0431 NC_012791.1 470609 471874 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; xanthine/uracil/vitamin C permease; KEGG: dia:Dtpsy_3257 benzoate transporter; benzoate transporter 470609..471874 Variovorax paradoxus S110 7970172 YP_002942361.1 CDS Vapar_0432 NC_012791.1 471871 472824 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 471871..472824 Variovorax paradoxus S110 7970173 YP_002942362.1 CDS Vapar_0433 NC_012791.1 472787 474088 R PFAM: PepSY-associated TM helix domain protein; KEGG: dac:Daci_2267 PepSY-associated TM helix domain-containing protein; PepSY-associated TM helix domain-containing protein complement(472787..474088) Variovorax paradoxus S110 7970174 YP_002942363.1 CDS Vapar_0434 NC_012791.1 474088 476349 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dia:Dtpsy_2068 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(474088..476349) Variovorax paradoxus S110 7970175 YP_002942364.1 CDS Vapar_0435 NC_012791.1 476488 477255 R PFAM: glutamine amidotransferase class-II; KEGG: ajs:Ajs_0335 glutamine amidotransferase, class-II; glutamine amidotransferase class-II complement(476488..477255) Variovorax paradoxus S110 7970176 YP_002942365.1 CDS Vapar_0436 NC_012791.1 477306 478445 R PFAM: extracellular ligand-binding receptor; KEGG: lch:Lcho_1126 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(477306..478445) Variovorax paradoxus S110 7970177 YP_002942366.1 CDS Vapar_0437 NC_012791.1 478510 480003 R TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4538 major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter complement(478510..480003) Variovorax paradoxus S110 7970178 YP_002942367.1 CDS Vapar_0438 NC_012791.1 480137 481510 D KEGG: mpt:Mpe_A3629 hypothetical protein; hypothetical protein 480137..481510 Variovorax paradoxus S110 7970179 YP_002942368.1 CDS Vapar_0439 NC_012791.1 481501 481737 R KEGG: rfr:Rfer_3668 hypothetical protein; hypothetical protein complement(481501..481737) Variovorax paradoxus S110 7970180 YP_002942369.1 CDS Vapar_0440 NC_012791.1 481742 483007 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(481742..483007) Variovorax paradoxus S110 7970181 YP_002942370.1 CDS Vapar_0441 NC_012791.1 483363 483866 D PFAM: fimbrial protein pilin; KEGG: abb:ABBFA_000333 fimbrial protein precursor (pilin) (Strain P1); fimbrial protein pilin 483363..483866 Variovorax paradoxus S110 7970182 YP_002942371.1 CDS Vapar_0442 NC_012791.1 484113 484475 D PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: rfr:Rfer_1266 Sel1-like; Sel1 domain-containing protein repeat-containing protein 484113..484475 Variovorax paradoxus S110 7970183 YP_002942372.1 CDS Vapar_0443 NC_012791.1 484513 485670 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: pol:Bpro_3014 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(484513..485670) Variovorax paradoxus S110 7970184 YP_002942373.1 CDS Vapar_0444 NC_012791.1 485674 486480 R PFAM: enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_4822 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(485674..486480) Variovorax paradoxus S110 7970185 YP_002942374.1 CDS Vapar_0445 NC_012791.1 486480 487658 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(486480..487658) Variovorax paradoxus S110 7970186 YP_002942375.1 CDS Vapar_0446 NC_012791.1 487792 488109 R KEGG: reu:Reut_B4367 hypothetical protein; hypothetical protein complement(487792..488109) Variovorax paradoxus S110 7970187 YP_002942376.1 CDS Vapar_0447 NC_012791.1 488192 489127 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbr:BB4633 LysR family regulatory protein; LysR family transcriptional regulator 488192..489127 Variovorax paradoxus S110 7970188 YP_002942377.1 CDS Vapar_0448 NC_012791.1 489435 489653 D KEGG: aav:Aave_2555 hypothetical protein; hypothetical protein 489435..489653 Variovorax paradoxus S110 7970189 YP_002942378.1 CDS Vapar_0449 NC_012791.1 489656 490450 D hypothetical protein 489656..490450 Variovorax paradoxus S110 7970190 YP_002942379.1 CDS Vapar_0450 NC_012791.1 490473 491783 R PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1147 major facilitator superfamily transporter; major facilitator superfamily protein complement(490473..491783) Variovorax paradoxus S110 7970191 YP_002942380.1 CDS Vapar_0451 NC_012791.1 492005 493132 D PFAM: protein of unknown function DUF1016; KEGG: hap:HAPS_1837 cytoplasmic protein; hypothetical protein 492005..493132 Variovorax paradoxus S110 7970192 YP_002942381.1 CDS Vapar_0452 NC_012791.1 493188 495362 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(493188..495362) Variovorax paradoxus S110 7970193 YP_002942382.1 CDS Vapar_0453 NC_012791.1 495419 496096 R KEGG: pol:Bpro_4516 haloacid dehalogenase, type II; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase, type II complement(495419..496096) Variovorax paradoxus S110 7970194 YP_002942383.1 CDS Vapar_0454 NC_012791.1 496208 496948 R PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: pol:Bpro_4515 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(496208..496948) Variovorax paradoxus S110 7970195 YP_002942384.1 CDS Vapar_0455 NC_012791.1 497074 498015 D PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4514 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 497074..498015 Variovorax paradoxus S110 7970196 YP_002942385.1 CDS Vapar_0456 NC_012791.1 498008 499198 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4514 hydroxymethylglutaryl-CoA lyase; L-carnitine dehydratase/bile acid-inducible protein F 498008..499198 Variovorax paradoxus S110 7970197 YP_002942386.1 CDS Vapar_0457 NC_012791.1 499245 500189 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0328 LysR family transcriptional regulator; LysR family transcriptional regulator 499245..500189 Variovorax paradoxus S110 7970198 YP_002942387.1 CDS Vapar_0458 NC_012791.1 500251 500703 D KEGG: aav:Aave_0412 transmembrane protein; transmembrane protein 500251..500703 Variovorax paradoxus S110 7970199 YP_002942388.1 CDS Vapar_0459 NC_012791.1 500710 502755 D KEGG: sus:Acid_0041 integral membrane protein-like protein; hypothetical protein 500710..502755 Variovorax paradoxus S110 7970200 YP_002942389.1 CDS Vapar_0460 NC_012791.1 502816 503211 R KEGG: lch:Lcho_4232 signal peptide; hypothetical protein complement(502816..503211) Variovorax paradoxus S110 7970201 YP_002942390.1 CDS argS NC_012791.1 503343 505028 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 503343..505028 Variovorax paradoxus S110 7970202 YP_002942391.1 CDS Vapar_0462 NC_012791.1 505036 505773 D PFAM: sporulation domain protein; KEGG: pol:Bpro_4489 sporulation related; sporulation domain-containing protein 505036..505773 Variovorax paradoxus S110 7970203 YP_002942392.1 CDS Vapar_0463 NC_012791.1 505919 506566 D PFAM: DSBA oxidoreductase; KEGG: xcv:XCV2315 thiol:disulfide interchange protein; DSBA oxidoreductase 505919..506566 Variovorax paradoxus S110 7970204 YP_002942393.1 CDS Vapar_0464 NC_012791.1 506760 507479 D TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: rfr:Rfer_0776 OstA-like protein; lipopolysaccharide transport periplasmic protein LptA 506760..507479 Variovorax paradoxus S110 7970205 YP_002942394.1 CDS Vapar_0465 NC_012791.1 507476 508270 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_4486 ABC transporter; ABC transporter 507476..508270 Variovorax paradoxus S110 7970206 YP_002942395.1 CDS Vapar_0466 NC_012791.1 508288 509880 D TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: dia:Dtpsy_0337 RNA polymerase, sigma 54 subunit, RpoN; RNA polymerase sigma-54 subunit RpoN 508288..509880 Variovorax paradoxus S110 7970207 YP_002942396.1 CDS Vapar_0467 NC_012791.1 509891 511495 D PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: rpi:Rpic_4172 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 509891..511495 Variovorax paradoxus S110 7970208 YP_002942397.1 CDS Vapar_0468 NC_012791.1 511506 512153 R PFAM: lysine exporter (LYSE/YGGA); KEGG: eba:ebA6561 amino acid efflux protein; lysine exporter LysE/YggA complement(511506..512153) Variovorax paradoxus S110 7970209 YP_002942398.1 CDS Vapar_0469 NC_012791.1 512172 512807 R PFAM: YceI family protein; KEGG: lch:Lcho_0457 YceI family protein; YceI family protein complement(512172..512807) Variovorax paradoxus S110 7970210 YP_002942399.1 CDS Vapar_0470 NC_012791.1 512848 513429 R PFAM: YceI family protein; KEGG: lch:Lcho_0458 YceI family protein; YceI family protein complement(512848..513429) Variovorax paradoxus S110 7970211 YP_002942400.1 CDS Vapar_0471 NC_012791.1 513426 514055 R PFAM: cytochrome B561; KEGG: lch:Lcho_0459 cytochrome b561; cytochrome B561 complement(513426..514055) Variovorax paradoxus S110 7970212 YP_002942401.1 CDS Vapar_0472 NC_012791.1 514146 515942 R PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: azo:azo3438 virulence regulator protein; histidine kinase complement(514146..515942) Variovorax paradoxus S110 7970213 YP_002942402.1 CDS Vapar_0473 NC_012791.1 516023 517264 D PFAM: RNA methylase; THUMP domain protein; KEGG: aav:Aave_0422 RNA methylase; RNA methylase 516023..517264 Variovorax paradoxus S110 7970214 YP_002942403.1 CDS Vapar_0474 NC_012791.1 517305 517736 D KEGG: pol:Bpro_4483 protein of unknown function DUF132; hypothetical protein 517305..517736 Variovorax paradoxus S110 7970215 YP_002942404.1 CDS Vapar_0475 NC_012791.1 517966 518208 D hypothetical protein 517966..518208 Variovorax paradoxus S110 7970216 YP_002942405.1 CDS Vapar_0476 NC_012791.1 518241 518495 D hypothetical protein 518241..518495 Variovorax paradoxus S110 7970217 YP_002942406.1 CDS Vapar_0477 NC_012791.1 518505 519422 R KEGG: aav:Aave_0425 hypothetical protein; hypothetical protein complement(518505..519422) Variovorax paradoxus S110 7970218 YP_002942407.1 CDS Vapar_0478 NC_012791.1 519419 521137 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: dac:Daci_3073 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase complement(519419..521137) Variovorax paradoxus S110 7970219 YP_002942408.1 CDS Vapar_0479 NC_012791.1 521195 521977 D PFAM: SEC-C motif domain protein; KEGG: aav:Aave_0426 SecC motif-containing protein; SEC-C motif domain-containing protein 521195..521977 Variovorax paradoxus S110 7970220 YP_002942409.1 CDS Vapar_0480 NC_012791.1 522024 523211 D PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1147 major facilitator superfamily transporter; major facilitator superfamily protein 522024..523211 Variovorax paradoxus S110 7970221 YP_002942410.1 CDS Vapar_0481 NC_012791.1 523201 523515 R KEGG: psa:PST_4142 predicted acetyltransferase; acetyltransferase complement(523201..523515) Variovorax paradoxus S110 7970222 YP_002942411.1 CDS Vapar_0482 NC_012791.1 523512 524009 R KEGG: pol:Bpro_4477 hypothetical protein; hypothetical protein complement(523512..524009) Variovorax paradoxus S110 7970223 YP_002942412.1 CDS Vapar_0483 NC_012791.1 524011 524565 R PFAM: CinA domain protein; KEGG: ajs:Ajs_0354 CinA domain-containing protein; CinA domain-containing protein complement(524011..524565) Variovorax paradoxus S110 7970224 YP_002942413.1 CDS Vapar_0484 NC_012791.1 524559 525086 R PFAM: phosphatidylglycerophosphatase A; KEGG: pol:Bpro_4475 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A complement(524559..525086) Variovorax paradoxus S110 7970225 YP_002942414.1 CDS Vapar_0485 NC_012791.1 525253 526713 D PFAM: major facilitator superfamily MFS_1; KEGG: mms:mma_1590 major facilitator transporter; major facilitator superfamily protein 525253..526713 Variovorax paradoxus S110 7970226 YP_002942415.1 CDS Vapar_0486 NC_012791.1 526724 527473 D KEGG: psp:PSPPH_2654 lipoprotein; lipoprotein 526724..527473 Variovorax paradoxus S110 7970227 YP_002942416.1 CDS Vapar_0487 NC_012791.1 527474 528433 R KEGG: dia:Dtpsy_0345 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(527474..528433) Variovorax paradoxus S110 7970228 YP_002942417.1 CDS Vapar_0488 NC_012791.1 528459 529088 R PFAM: isochorismatase hydrolase; KEGG: bxe:Bxe_A0706 isochorismatase hydrolase; isochorismatase hydrolase complement(528459..529088) Variovorax paradoxus S110 7970229 YP_002942418.1 CDS Vapar_0489 NC_012791.1 529192 530169 D PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pol:Bpro_4080 AraC family transcriptional regulator with amidase-like domain; AraC family transcriptional regulator 529192..530169 Variovorax paradoxus S110 7970230 YP_002942419.1 CDS Vapar_0490 NC_012791.1 530166 531350 R ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase complement(530166..531350) Variovorax paradoxus S110 7974286 YP_002942420.1 CDS Vapar_0491 NC_012791.1 531365 532636 R PFAM: sodium/hydrogen exchanger; KEGG: aav:Aave_0435 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(531365..532636) Variovorax paradoxus S110 7972901 YP_002942421.1 CDS Vapar_0492 NC_012791.1 532633 534603 R KEGG: dia:Dtpsy_0348 site-specific recombinase transmembrane protein; site-specific recombinase transmembrane protein complement(532633..534603) Variovorax paradoxus S110 7972902 YP_002942422.1 CDS apaG NC_012791.1 534730 535125 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(534730..535125) Variovorax paradoxus S110 7972903 YP_002942423.1 CDS Vapar_0494 NC_012791.1 535197 535895 D KEGG: pna:Pnap_3660 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 535197..535895 Variovorax paradoxus S110 7972904 YP_002942424.1 CDS Vapar_0495 NC_012791.1 535905 536177 R KEGG: ajs:Ajs_4156 hypothetical protein; hypothetical protein complement(535905..536177) Variovorax paradoxus S110 7972905 YP_002942425.1 CDS Vapar_0496 NC_012791.1 536350 537357 D PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: bbr:BB2668 succinylglutamate desuccinylase; succinylglutamate desuccinylase/aspartoacylase 536350..537357 Variovorax paradoxus S110 7972906 YP_002942426.1 CDS Vapar_0497 NC_012791.1 537437 538462 D KEGG: pol:Bpro_3002 hypothetical protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein; Ku protein 537437..538462 Variovorax paradoxus S110 7972907 YP_002942427.1 CDS Vapar_0498 NC_012791.1 538471 539367 D TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: pol:Bpro_3003 ATP-dependent DNA ligase; DNA polymerase LigD, polymerase domain-containing protein 538471..539367 Variovorax paradoxus S110 7972908 YP_002942428.1 CDS Vapar_0499 NC_012791.1 539378 540196 R PFAM: transglutaminase; SMART: transglutaminase; KEGG: mpt:Mpe_A0053 transglutaminase-like domain-containing protein; transglutaminase complement(539378..540196) Variovorax paradoxus S110 7972909 YP_002942429.1 CDS Vapar_0500 NC_012791.1 540533 540700 D hypothetical protein 540533..540700 Variovorax paradoxus S110 7972910 YP_002942430.1 CDS Vapar_0501 NC_012791.1 540697 542883 D PFAM: catalase domain protein; ThiJ/PfpI domain protein; KEGG: pol:Bpro_2453 catalase; catalase 540697..542883 Variovorax paradoxus S110 7972911 YP_002942431.1 CDS Vapar_0502 NC_012791.1 543043 545196 D SMART: hypothetical protein; KEGG: lch:Lcho_4095 hypotheticalprotein; hypothetical protein 543043..545196 Variovorax paradoxus S110 7972912 YP_002942432.1 CDS Vapar_0503 NC_012791.1 545565 547283 D PFAM: polypeptide-transport-associated domain protein ShlB-type; surface antigen variable number repeat protein; KEGG: cak:Caul_4107 polypeptide-transport-associated domain-containing protein; polypeptide-transport-associated domain-containing protein ShlB-type 545565..547283 Variovorax paradoxus S110 7972913 YP_002942433.1 CDS Vapar_0504 NC_012791.1 547291 552825 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: mgm:Mmc1_2695 filamentous haemagglutinin family outer membrane protein; filamentous hemagglutinin family outer membrane protein 547291..552825 Variovorax paradoxus S110 7972914 YP_002942434.1 CDS Vapar_0505 NC_012791.1 552840 553940 D PFAM: radical SAM protein; KEGG: xau:Xaut_1935 radical SAM domain-containing protein; radical SAM protein 552840..553940 Variovorax paradoxus S110 7972915 YP_002942435.1 CDS Vapar_0506 NC_012791.1 553942 554721 D PFAM: glycosyl transferase family 2; KEGG: bid:Bind_0088 glycosyl transferase family protein; family 2 glycosyl transferase 553942..554721 Variovorax paradoxus S110 7972916 YP_002942436.1 CDS Vapar_0507 NC_012791.1 554740 555543 R KEGG: bpy:Bphyt_3168 hypothetical protein; hypothetical protein complement(554740..555543) Variovorax paradoxus S110 7972917 YP_002942437.1 CDS Vapar_0508 NC_012791.1 555613 557604 R PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: azo:azo3438 virulence regulator protein; histidine kinase complement(555613..557604) Variovorax paradoxus S110 7972918 YP_002942438.1 CDS Vapar_0509 NC_012791.1 557601 558578 R KEGG: azo:azo1878 hypothetical protein; ABC transporter periplasmic protein complement(557601..558578) Variovorax paradoxus S110 7972919 YP_002942439.1 CDS Vapar_0510 NC_012791.1 558821 560710 R PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: azo:azo3438 virulence regulator protein; histidine kinase complement(558821..560710) Variovorax paradoxus S110 7972920 YP_002942440.1 CDS Vapar_0511 NC_012791.1 560778 560870 R hypothetical protein complement(560778..560870) Variovorax paradoxus S110 7972921 YP_002942441.1 CDS Vapar_0512 NC_012791.1 560987 561997 D TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: mpt:Mpe_A1250 phosphonates-binding periplasmic protein precursor; phosphonate ABC transporter periplasmic phosphonate-binding protein 560987..561997 Variovorax paradoxus S110 7972922 YP_002942442.1 CDS Vapar_0513 NC_012791.1 562012 563070 D TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: pzu:PHZ_c3317 phosphonate ABC transporter periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 562012..563070 Variovorax paradoxus S110 7972923 YP_002942443.1 CDS Vapar_0514 NC_012791.1 563214 564545 D TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bpa:BPP0728 hypothetical protein; type VI secretion protein 563214..564545 Variovorax paradoxus S110 7972924 YP_002942444.1 CDS Vapar_0515 NC_012791.1 564578 565906 D TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bpt:Bpet4103 hypothetical protein; DotU family type IV/VI secretion system protein 564578..565906 Variovorax paradoxus S110 7972925 YP_002942445.1 CDS Vapar_0516 NC_012791.1 565903 569502 D TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: azo:azo3890 ImcF-like protein; type VI secretion protein IcmF 565903..569502 Variovorax paradoxus S110 7972926 YP_002942446.1 CDS Vapar_0517 NC_012791.1 569499 570125 D TIGRFAM: type VI secretion-associated protein, BMA_A0400 family; KEGG: azo:azo3889 hypothetical protein; type VI secretion-associated protein 569499..570125 Variovorax paradoxus S110 7972927 YP_002942447.1 CDS Vapar_0518 NC_012791.1 570122 570748 D KEGG: pna:Pnap_1001 hypothetical protein; hypothetical protein 570122..570748 Variovorax paradoxus S110 7972928 YP_002942448.1 CDS Vapar_0519 NC_012791.1 570745 572664 D PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: azo:azo3888 serine/threonine kinase; serine/threonine protein kinase 570745..572664 Variovorax paradoxus S110 7972929 YP_002942449.1 CDS Vapar_0520 NC_012791.1 572719 574323 D PFAM: 3D domain protein; MltA domain protein; KEGG: dar:Daro_3704 MltA:3D; 3D domain-containing protein 572719..574323 Variovorax paradoxus S110 7972930 YP_002942450.1 CDS Vapar_0521 NC_012791.1 574429 575178 D KEGG: bph:Bphy_5114 hypothetical protein; hypothetical protein 574429..575178 Variovorax paradoxus S110 7972931 YP_002942451.1 CDS Vapar_0522 NC_012791.1 575207 576355 D KEGG: bvi:Bcep1808_2029 hypothetical protein; hypothetical protein 575207..576355 Variovorax paradoxus S110 7972932 YP_002942452.1 CDS Vapar_0523 NC_012791.1 576526 578472 D PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: mlo:mlr3300 hypothetical protein; peptidase C14 caspase catalytic subunit p20 576526..578472 Variovorax paradoxus S110 7972933 YP_002942453.1 CDS Vapar_0524 NC_012791.1 578507 579064 D hypothetical protein 578507..579064 Variovorax paradoxus S110 7972934 YP_002942454.1 CDS Vapar_0525 NC_012791.1 579066 579902 D PFAM: virulence protein SciE type; KEGG: azo:azo3899 cytoplasmic protein,SciE; virulence protein SciE type 579066..579902 Variovorax paradoxus S110 7972935 YP_002942455.1 CDS Vapar_0526 NC_012791.1 579905 580420 D TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: lch:Lcho_4087 type VI secretion system lysozyme-related protein; type VI secretion system lysozyme-like protein 579905..580420 Variovorax paradoxus S110 7972936 YP_002942456.1 CDS Vapar_0527 NC_012791.1 580428 582320 D TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: azo:azo3901 cytoplasmic protein, SciC; type VI secretion protein 580428..582320 Variovorax paradoxus S110 7972937 YP_002942457.1 CDS Vapar_0528 NC_012791.1 582296 583375 D TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: azo:azo3902 cytoplasmic protein, SciB; type VI secretion protein 582296..583375 Variovorax paradoxus S110 7972938 YP_002942458.1 CDS Vapar_0529 NC_012791.1 583372 584706 D PFAM: methyltransferase type 11; TPR repeat-containing protein; methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: lch:Lcho_4081 methyltransferase type 12; type 11 methyltransferase 583372..584706 Variovorax paradoxus S110 7972939 YP_002942459.1 CDS Vapar_0530 NC_012791.1 584776 587505 D KEGG: azo:azo3903 ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA; ATPase AAA; Clp domain protein; SMART: ATPase AAA; type VI secretion ATPase, ClpV1 family 584776..587505 Variovorax paradoxus S110 7972940 YP_002942460.1 CDS Vapar_0531 NC_012791.1 587530 590541 D TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: pae:PA0095 hypothetical protein; type VI secretion system Vgr family protein 587530..590541 Variovorax paradoxus S110 7972941 YP_002942461.1 CDS Vapar_0532 NC_012791.1 590557 593169 D PFAM: pentapeptide repeat protein; KEGG: scl:sce4933 hypothetical protein; pentapeptide repeat-containing protein 590557..593169 Variovorax paradoxus S110 7972942 YP_002942462.1 CDS Vapar_0533 NC_012791.1 593171 594238 D PFAM: pentapeptide repeat protein; KEGG: bbr:BB0796 hypothetical protein; pentapeptide repeat-containing protein 593171..594238 Variovorax paradoxus S110 7972943 YP_002942463.1 CDS Vapar_0534 NC_012791.1 594306 594992 D KEGG: scl:sce8472 hypothetical protein; hypothetical protein 594306..594992 Variovorax paradoxus S110 7972944 YP_002942464.1 CDS Vapar_0535 NC_012791.1 595005 595400 D KEGG: spe:Spro_4188 hypothetical protein; hypothetical protein 595005..595400 Variovorax paradoxus S110 7972945 YP_002942465.1 CDS Vapar_0536 NC_012791.1 595488 597866 D TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: pfl:PFL_3004 rhs-family protein; type VI secretion system Vgr family protein 595488..597866 Variovorax paradoxus S110 7972946 YP_002942466.1 CDS Vapar_0537 NC_012791.1 597893 598375 D KEGG: pmy:Pmen_2333 hypothetical protein; hypothetical protein 597893..598375 Variovorax paradoxus S110 7972947 YP_002942467.1 CDS Vapar_0538 NC_012791.1 598395 599516 D KEGG: pfl:PFL_3002 hypothetical protein; hypothetical protein 598395..599516 Variovorax paradoxus S110 7972948 YP_002942468.1 CDS Vapar_0539 NC_012791.1 599513 600544 D catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase 599513..600544 Variovorax paradoxus S110 7972949 YP_002942469.1 CDS Vapar_0540 NC_012791.1 600541 601710 D KEGG: pau:PA14_01200 hypothetical protein; hypothetical protein 600541..601710 Variovorax paradoxus S110 7972950 YP_002942470.1 CDS Vapar_0541 NC_012791.1 601887 602639 D SMART: beta-propeller repeat TECPR; KEGG: pau:PA14_01220 hypothetical protein; beta-propeller repeat-containing protein 601887..602639 Variovorax paradoxus S110 7972951 YP_002942471.1 CDS Vapar_0542 NC_012791.1 602654 603916 D KEGG: pau:PA14_01230 hypothetical protein; hypothetical protein 602654..603916 Variovorax paradoxus S110 7972952 YP_002942472.1 CDS Vapar_0543 NC_012791.1 603919 604089 D hypothetical protein 603919..604089 Variovorax paradoxus S110 7972953 YP_002942473.1 CDS Vapar_0544 NC_012791.1 604203 605867 D KEGG: azo:azo3884 regulatory protein; TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; FHA domain containing protein 604203..605867 Variovorax paradoxus S110 7972954 YP_002942474.1 CDS Vapar_0545 NC_012791.1 605923 606762 D PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: dac:Daci_3842 protein serine/threonine phosphatase; protein serine/threonine phosphatase 605923..606762 Variovorax paradoxus S110 7972955 YP_002942475.1 CDS Vapar_0546 NC_012791.1 606789 607328 R KEGG: hch:HCH_04102 negative regulator of beta-lactamase expression; hypothetical protein complement(606789..607328) Variovorax paradoxus S110 7972956 YP_002942476.1 CDS Vapar_0547 NC_012791.1 607356 607916 R KEGG: similar to extensin-like protein; hypothetical protein complement(607356..607916) Variovorax paradoxus S110 7972957 YP_002942477.1 CDS Vapar_0548 NC_012791.1 607989 608471 R PFAM: protein of unknown function DUF796; KEGG: lch:Lcho_4089 hypothetical protein; hypothetical protein complement(607989..608471) Variovorax paradoxus S110 7972958 YP_002942478.1 CDS Vapar_0549 NC_012791.1 608618 610111 R TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: azo:azo3896 cytoplasmic protein, SciI; EvpB family type VI secretion protein complement(608618..610111) Variovorax paradoxus S110 7972959 YP_002942479.1 CDS Vapar_0550 NC_012791.1 610153 610671 R TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: azo:azo3895 cytoplasmic protein,SciH; type VI secretion protein complement(610153..610671) Variovorax paradoxus S110 7972960 YP_002942480.1 CDS Vapar_0551 NC_012791.1 610742 611773 R TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: lch:Lcho_4092 ImpA family type VI secretion-associated protein; ImpA family type VI secretion-associated protein complement(610742..611773) Variovorax paradoxus S110 7972961 YP_002942481.1 CDS Vapar_0552 NC_012791.1 611845 612360 D TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: pae:PA0080 hypothetical protein; type VI secretion lipoprotein 611845..612360 Variovorax paradoxus S110 7972962 YP_002942482.1 CDS Vapar_0553 NC_012791.1 612383 613513 R KEGG: dac:Daci_3846 type VI secretion protein IcmF; hypothetical protein complement(612383..613513) Variovorax paradoxus S110 7972963 YP_002942483.1 CDS Vapar_0554 NC_012791.1 613524 614849 R KEGG: eba:ebA1686 serine/threonine protein kinase; hypothetical protein complement(613524..614849) Variovorax paradoxus S110 7972964 YP_002942484.1 CDS Vapar_0555 NC_012791.1 615112 615795 D PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: tbd:Tbd_2570 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator 615112..615795 Variovorax paradoxus S110 7972965 YP_002942485.1 CDS Vapar_0556 NC_012791.1 615810 617141 R PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A3472 flavoprotein involved in K+ transport; FAD dependent oxidoreductase complement(615810..617141) Variovorax paradoxus S110 7972966 YP_002942486.1 CDS Vapar_0557 NC_012791.1 617178 617462 R KEGG: bxe:Bxe_A1413 hypothetical protein; hypothetical protein complement(617178..617462) Variovorax paradoxus S110 7972967 YP_002942487.1 CDS Vapar_0558 NC_012791.1 617453 618451 R PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: mpt:Mpe_A3475 hypothetical protein; AIR synthase-like protein complement(617453..618451) Variovorax paradoxus S110 7972968 YP_002942488.1 CDS Vapar_0559 NC_012791.1 618448 619008 R PFAM: GCN5-related N-acetyltransferase; KEGG: bph:Bphy_4563 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferaser complement(618448..619008) Variovorax paradoxus S110 7972969 YP_002942489.1 CDS Vapar_0560 NC_012791.1 619011 620093 R PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mpt:Mpe_A3477 hypothetical protein; radical SAM protein complement(619011..620093) Variovorax paradoxus S110 7972970 YP_002942490.1 CDS Vapar_0561 NC_012791.1 620056 621108 R PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pna:Pnap_2104 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(620056..621108) Variovorax paradoxus S110 7972971 YP_002942491.1 CDS Vapar_0562 NC_012791.1 621124 621606 R KEGG: mpt:Mpe_A3479 hypothetical protein; hypothetical protein complement(621124..621606) Variovorax paradoxus S110 7972972 YP_002942492.1 CDS Vapar_0563 NC_012791.1 621957 623354 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: pna:Pnap_2106 GntR family transcriptional regulator; GntR family transcriptional regulator with aminotransferase domain 621957..623354 Variovorax paradoxus S110 7972973 YP_002942493.1 CDS Vapar_0564 NC_012791.1 623368 623817 R KEGG: nmu:Nmul_A0976 hypothetical protein; hypothetical protein complement(623368..623817) Variovorax paradoxus S110 7972974 YP_002942494.1 CDS Vapar_0565 NC_012791.1 624086 624454 D KEGG: pna:Pnap_0986 hypothetical protein; hypothetical protein 624086..624454 Variovorax paradoxus S110 7972975 YP_002942495.1 CDS Vapar_0566 NC_012791.1 624475 624930 D hypothetical protein 624475..624930 Variovorax paradoxus S110 7972976 YP_002942496.1 CDS Vapar_0567 NC_012791.1 624954 625181 R KEGG: aav:Aave_2273 hypothetical protein; hypothetical protein complement(624954..625181) Variovorax paradoxus S110 7972977 YP_002942497.1 CDS Vapar_0568 NC_012791.1 625203 625553 R KEGG: pzu:PHZ_c3439 translation initiation factor IF-2; translation initiation factor IF-2 complement(625203..625553) Variovorax paradoxus S110 7972978 YP_002942498.1 CDS Vapar_0569 NC_012791.1 625756 626013 D hypothetical protein 625756..626013 Variovorax paradoxus S110 7972979 YP_002942499.1 CDS Vapar_0570 NC_012791.1 626206 626691 D KEGG: pna:Pnap_2293 hypothetical protein; hypothetical protein 626206..626691 Variovorax paradoxus S110 7972980 YP_002942500.1 CDS Vapar_0571 NC_012791.1 626777 627505 D TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: dia:Dtpsy_0352 phosphoglycolate phosphatase; phosphoglycolate phosphatase 626777..627505 Variovorax paradoxus S110 7972981 YP_002942501.1 CDS Vapar_0572 NC_012791.1 627517 628119 R KEGG: pol:Bpro_4459 lipoprotein transmembrane; lipoprotein transmembrane complement(627517..628119) Variovorax paradoxus S110 7973552 YP_002942502.1 CDS Vapar_0573 NC_012791.1 628448 629950 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 628448..629950 Variovorax paradoxus S110 7973553 YP_002942503.1 CDS Vapar_0574 NC_012791.1 629947 630339 D KEGG: tgr:Tgr7_2876 hypothetical protein; hypothetical protein 629947..630339 Variovorax paradoxus S110 7973554 YP_002942504.1 CDS Vapar_0575 NC_012791.1 630336 630920 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: pna:Pnap_3652 anthranilate synthase component II; glutamine amidotransferase of anthranilate synthase 630336..630920 Variovorax paradoxus S110 7973555 YP_002942505.1 CDS Vapar_0576 NC_012791.1 630929 631987 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: pna:Pnap_3651 threonine aldolase; Threonine aldolase 630929..631987 Variovorax paradoxus S110 7973556 YP_002942506.1 CDS Vapar_0577 NC_012791.1 632006 632665 D PFAM: lysine exporter (LYSE/YGGA); KEGG: pol:Bpro_4453 lysine exporter protein (LysE/YggA); lysine exporter LysE/YggA 632006..632665 Variovorax paradoxus S110 7973557 YP_002942507.1 CDS trpD NC_012791.1 632686 633711 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 632686..633711 Variovorax paradoxus S110 7973558 YP_002942508.1 CDS Vapar_0579 NC_012791.1 633745 634545 D PFAM: indole-3-glycerol phosphate synthase; KEGG: aav:Aave_0586 indole-3-glycerol-phosphate synthase; indole-3-glycerol-phosphate synthase 633745..634545 Variovorax paradoxus S110 7973559 YP_002942509.1 CDS Vapar_0580 NC_012791.1 634542 635261 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 634542..635261 Variovorax paradoxus S110 7973560 YP_002942510.1 CDS Vapar_0581 NC_012791.1 635768 636961 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 635768..636961 Variovorax paradoxus S110 7973564 YP_002942511.1 CDS secE NC_012791.1 637225 637608 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 637225..637608 Variovorax paradoxus S110 7973566 YP_002942512.1 CDS Vapar_0583 NC_012791.1 637609 638220 D KEGG: rfr:Rfer_3597 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein; NusG antitermination factor 637609..638220 Variovorax paradoxus S110 7973567 YP_002942513.1 CDS rplK NC_012791.1 638357 638788 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 638357..638788 Variovorax paradoxus S110 7973568 YP_002942514.1 CDS rplA NC_012791.1 638789 639487 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 638789..639487 Variovorax paradoxus S110 7973569 YP_002942515.1 CDS rplJ NC_012791.1 639734 640267 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 639734..640267 Variovorax paradoxus S110 7973570 YP_002942516.1 CDS rplL NC_012791.1 640311 640688 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 640311..640688 Variovorax paradoxus S110 7973571 YP_002942517.1 CDS rpoB NC_012791.1 640943 645067 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 640943..645067 Variovorax paradoxus S110 7973572 YP_002942518.1 CDS Vapar_0589 NC_012791.1 645089 649318 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 645089..649318 Variovorax paradoxus S110 7973573 YP_002942519.1 CDS Vapar_0590 NC_012791.1 649421 650029 D KEGG: aav:Aave_4529 hypothetical protein; hypothetical protein 649421..650029 Variovorax paradoxus S110 7973574 YP_002942520.1 CDS Vapar_0591 NC_012791.1 650171 651499 D TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: dia:Dtpsy_3243 sun protein; sun protein 650171..651499 Variovorax paradoxus S110 7973575 YP_002942521.1 CDS Vapar_0592 NC_012791.1 651480 652127 D KEGG: aav:Aave_4527 proline rich signal peptide protein; proline rich signal peptide protein 651480..652127 Variovorax paradoxus S110 7973576 YP_002942522.1 CDS Vapar_0593 NC_012791.1 652124 654454 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; KEGG: ajs:Ajs_3892 multi-sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 652124..654454 Variovorax paradoxus S110 7973577 YP_002942523.1 CDS Vapar_0594 NC_012791.1 654546 655247 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pol:Bpro_4433 two component transcriptional regulator, fis family; response regulator receiver protein 654546..655247 Variovorax paradoxus S110 7973578 YP_002942524.1 CDS Vapar_0595 NC_012791.1 655833 656099 R PFAM: transposase IS3/IS911 family protein; KEGG: dac:Daci_3628 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(655833..656099) Variovorax paradoxus S110 7973580 YP_002942525.1 CDS Vapar_0596 NC_012791.1 656317 656589 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ajs:Ajs_1806 XRE family transcriptional regulator; XRE family transcriptional regulator complement(656317..656589) Variovorax paradoxus S110 7973581 YP_002942526.1 CDS Vapar_0597 NC_012791.1 656857 657270 D KEGG: mms:mma_0989 hypothetical protein; hypothetical protein 656857..657270 Variovorax paradoxus S110 7973582 YP_002942527.1 CDS Vapar_0598 NC_012791.1 657314 658342 D KEGG: cvi:CV_1212 hypothetical protein; hypothetical protein 657314..658342 Variovorax paradoxus S110 7973583 YP_002942528.1 CDS Vapar_0599 NC_012791.1 658542 658889 D KEGG: pau:PA14_31230 hypothetical protein; hypothetical protein 658542..658889 Variovorax paradoxus S110 7973584 YP_002942529.1 CDS Vapar_0600 NC_012791.1 659041 659496 D KEGG: bcj:BCAL1203 hypothetical protein; hypothetical protein 659041..659496 Variovorax paradoxus S110 7973585 YP_002942530.1 CDS Vapar_0601 NC_012791.1 659559 660587 D TIGRFAM: phage/plasmid-related protein TIGR03299; KEGG: pmy:Pmen_1184 hypothetical protein; phage/plasmid-like protein 659559..660587 Variovorax paradoxus S110 7973586 YP_002942531.1 CDS Vapar_0602 NC_012791.1 660681 661424 D TIGRFAM: phage-type endonuclease; KEGG: dar:Daro_1657 hypothetical protein; phage-type endonuclease 660681..661424 Variovorax paradoxus S110 7973587 YP_002942532.1 CDS Vapar_0603 NC_012791.1 661955 662488 D KEGG: tmz:Tmz1t_0976 hypothetical protein; hypothetical protein 661955..662488 Variovorax paradoxus S110 7973588 YP_002942533.1 CDS Vapar_0604 NC_012791.1 662485 662817 D hypothetical protein 662485..662817 Variovorax paradoxus S110 7973589 YP_002942534.1 CDS Vapar_0605 NC_012791.1 662804 663055 D KEGG: bcj:BCAL2510 hypothetical protein; hypothetical protein 662804..663055 Variovorax paradoxus S110 7973590 YP_002942535.1 CDS Vapar_0606 NC_012791.1 663961 664188 D hypothetical protein 663961..664188 Variovorax paradoxus S110 7973591 YP_002942536.1 CDS Vapar_0607 NC_012791.1 664205 665164 D hypothetical protein 664205..665164 Variovorax paradoxus S110 7973592 YP_002942537.1 CDS Vapar_0608 NC_012791.1 665224 665709 D PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_0681 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 665224..665709 Variovorax paradoxus S110 7973593 YP_002942538.1 CDS Vapar_0610 NC_012791.1 666153 667355 R PFAM: porin Gram-negative type; KEGG: vei:Veis_4644 porin; porin complement(666153..667355) Variovorax paradoxus S110 7973595 YP_002942539.1 CDS Vapar_0611 NC_012791.1 667566 668486 R PFAM: conserved hypothetical protein; KEGG: cti:RALTA_B0545 conserved hypothetical protein, UPF0065; hypothetical protein complement(667566..668486) Variovorax paradoxus S110 7973596 YP_002942540.1 CDS Vapar_0612 NC_012791.1 668561 669853 R PFAM: carboxylesterase type B; KEGG: bsu:BSU34390 para-nitrobenzyl esterase (intracellular esterase B); carboxylesterase type B complement(668561..669853) Variovorax paradoxus S110 7973597 YP_002942541.1 CDS Vapar_0613 NC_012791.1 669937 670857 D hypothetical protein 669937..670857 Variovorax paradoxus S110 7973598 YP_002942542.1 CDS Vapar_0614 NC_012791.1 671995 672870 R PFAM: amidohydrolase 2; KEGG: Acmsd; aminocarboxymuconate semialdehyde decarboxylase ; K03392 aminocarboxymuconate-semialdehyde decarboxylase; amidohydrolase 2 complement(671995..672870) Variovorax paradoxus S110 7973599 YP_002942543.1 CDS Vapar_0615 NC_012791.1 672875 673804 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_A1113 dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(672875..673804) Variovorax paradoxus S110 7973600 YP_002942544.1 CDS Vapar_0616 NC_012791.1 673818 674720 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mag:amb2827 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(673818..674720) Variovorax paradoxus S110 7973601 YP_002942545.1 CDS Vapar_0617 NC_012791.1 674717 675112 R PFAM: endoribonuclease L-PSP; KEGG: bur:Bcep18194_B0915 endoribonuclease L-PSP; endoribonuclease L-PSP complement(674717..675112) Variovorax paradoxus S110 7973602 YP_002942546.1 CDS Vapar_0618 NC_012791.1 675142 676194 R PFAM: malate/L-lactate dehydrogenase; KEGG: met:M446_3591 malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase complement(675142..676194) Variovorax paradoxus S110 7973603 YP_002942547.1 CDS Vapar_0619 NC_012791.1 676191 676613 R PFAM: cupin; KEGG: acr:Acry_1969 anti-ECFsigma factor, ChrR; cupin complement(676191..676613) Variovorax paradoxus S110 7973604 YP_002942548.1 CDS Vapar_0620 NC_012791.1 676638 677414 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0620 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(676638..677414) Variovorax paradoxus S110 7973605 YP_002942549.1 CDS Vapar_0621 NC_012791.1 677411 678241 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bph:Bphy_3180 ABC transporter; ABC transporter complement(677411..678241) Variovorax paradoxus S110 7973606 YP_002942550.1 CDS Vapar_0622 NC_012791.1 678364 679380 D PFAM: NMT1/THI5 like domain protein; KEGG: oca:OCAR_7362 membrane lipoprotein lipid attachment site; NMT1/THI5 like domain-containing protein 678364..679380 Variovorax paradoxus S110 7973607 YP_002942551.1 CDS Vapar_0623 NC_012791.1 679414 681015 D PFAM: monooxygenase FAD-binding; KEGG: cti:RALTA_B2288 monooxygenase, FAD-binding domain; FAD dependent oxidoreductase; FAD-binding monooxygenase 679414..681015 Variovorax paradoxus S110 7973608 YP_002942552.1 CDS Vapar_0624 NC_012791.1 681012 681761 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_3324 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 681012..681761 Variovorax paradoxus S110 7973609 YP_002942553.1 CDS Vapar_0625 NC_012791.1 681792 682463 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bur:Bcep18194_A4135 GntR family transcriptional regulator; GntR family transcriptional regulator complement(681792..682463) Variovorax paradoxus S110 7973610 YP_002942554.1 CDS Vapar_0626 NC_012791.1 682552 683541 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo1118 AraC family transcriptional regulator; AraC family transcriptional regulator complement(682552..683541) Variovorax paradoxus S110 7973611 YP_002942555.1 CDS Vapar_0627 NC_012791.1 683553 684350 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: azo:azo1120 short chain dehydrogenase; short chain dehydrogenase complement(683553..684350) Variovorax paradoxus S110 7973612 YP_002942556.1 CDS Vapar_0628 NC_012791.1 684364 685323 R PFAM: ferredoxin; FAD-binding 9 siderophore-interacting domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: azo:azo1124 vanillate O-demethylase oxidoreductase; ferredoxin complement(684364..685323) Variovorax paradoxus S110 7973613 YP_002942557.1 CDS Vapar_0629 NC_012791.1 685578 686642 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo1118 AraC family transcriptional regulator; AraC family transcriptional regulator 685578..686642 Variovorax paradoxus S110 7973614 YP_002942558.1 CDS Vapar_0630 NC_012791.1 686851 687912 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: cak:Caul_1137 vanillate monooxygenase; Rieske (2Fe-2S) domain-containing protein 686851..687912 Variovorax paradoxus S110 7973615 YP_002942559.1 CDS Vapar_0631 NC_012791.1 688000 689172 R PFAM: extracellular ligand-binding receptor; KEGG: azo:azo1129 ABC transporter substrate-binding protein; extracellular ligand-binding receptor complement(688000..689172) Variovorax paradoxus S110 7973616 YP_002942560.1 CDS Vapar_0632 NC_012791.1 689235 689963 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azo:azo1128 ABC transporter ATP-binding protein; ABC transporter complement(689235..689963) Variovorax paradoxus S110 7973617 YP_002942561.1 CDS Vapar_0633 NC_012791.1 689960 690715 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azo:azo1127 ABC transporter ATP-binding protein; ABC transporter complement(689960..690715) Variovorax paradoxus S110 7973618 YP_002942562.1 CDS Vapar_0634 NC_012791.1 690732 691706 R PFAM: inner-membrane translocator; KEGG: azo:azo1126 branched-chain amino acid transport permease; inner-membrane translocator complement(690732..691706) Variovorax paradoxus S110 7973619 YP_002942563.1 CDS Vapar_0635 NC_012791.1 691759 692679 R PFAM: inner-membrane translocator; KEGG: azo:azo1125 ABC transporter permease protein; ABC transporter permease complement(691759..692679) Variovorax paradoxus S110 7973620 YP_002942564.1 CDS Vapar_0636 NC_012791.1 693032 694399 D PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, subunit alpha-like; KEGG: azo:azo1123 dioxygenase hydroxylase large component; Rieske (2Fe-2S) domain-containing protein 693032..694399 Variovorax paradoxus S110 7973621 YP_002942565.1 CDS Vapar_0637 NC_012791.1 694396 694932 D PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: azo:azo1122 dioxygenase, hydroxylase small component; aromatic-ring-hydroxylating dioxygenase subunit beta 694396..694932 Variovorax paradoxus S110 7973622 YP_002942566.1 CDS Vapar_0638 NC_012791.1 694929 695531 D PFAM: isochorismatase hydrolase; KEGG: azo:azo1121 isochorismatase family protein; isochorismatase hydrolase 694929..695531 Variovorax paradoxus S110 7973623 YP_002942567.1 CDS Vapar_0639 NC_012791.1 695746 696798 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo1118 AraC family transcriptional regulator; AraC family transcriptional regulator 695746..696798 Variovorax paradoxus S110 7973624 YP_002942568.1 CDS Vapar_0641 NC_012791.1 698210 699379 D PFAM: extracellular ligand-binding receptor; KEGG: azo:azo1129 ABC transporter substrate-binding protein; extracellular ligand-binding receptor 698210..699379 Variovorax paradoxus S110 7973626 YP_002942569.1 CDS Vapar_0642 NC_012791.1 699537 700325 D KEGG: azo:azo0490 acetone-cyanohydrin lyase; acetone-cyanohydrin lyase 699537..700325 Variovorax paradoxus S110 7973627 YP_002942570.1 CDS Vapar_0643 NC_012791.1 700367 701554 D PFAM: extracellular ligand-binding receptor; KEGG: pla:Plav_1972 extracellular ligand-binding receptor; extracellular ligand-binding receptor 700367..701554 Variovorax paradoxus S110 7973628 YP_002942571.1 CDS Vapar_0645 NC_012791.1 702440 703963 R Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit B complement(702440..703963) Variovorax paradoxus S110 7973630 YP_002942572.1 CDS Vapar_0646 NC_012791.1 703960 706218 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: vei:Veis_1965 indolepyruvate ferredoxin oxidoreductase; indolepyruvate ferredoxin oxidoreductase complement(703960..706218) Variovorax paradoxus S110 7973631 YP_002942573.1 CDS Vapar_0647 NC_012791.1 706255 707034 R PFAM: cyclase family protein; KEGG: vei:Veis_1964 cyclase family protein; cyclase family protein complement(706255..707034) Variovorax paradoxus S110 7973632 YP_002942574.1 CDS Vapar_0648 NC_012791.1 707084 708679 R PFAM: FAD dependent oxidoreductase; KEGG: vei:Veis_1963 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(707084..708679) Variovorax paradoxus S110 7973226 YP_002942575.1 CDS Vapar_0651 NC_012791.1 709758 710243 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RSc1821 transcription regulator protein; MarR family transcriptional regulator complement(709758..710243) Variovorax paradoxus S110 7974614 YP_002942576.1 CDS Vapar_0652 NC_012791.1 710320 711081 R PFAM: Asp/Glu/hydantoin racemase; KEGG: vei:Veis_4205 Asp/Glu racemase; Asp/Glu/hydantoin racemase complement(710320..711081) Variovorax paradoxus S110 7974615 YP_002942577.1 CDS Vapar_0653 NC_012791.1 711078 712097 R PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vei:Veis_4206 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase complement(711078..712097) Variovorax paradoxus S110 7974616 YP_002942578.1 CDS Vapar_0654 NC_012791.1 712113 713054 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: vei:Veis_4213 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(712113..713054) Variovorax paradoxus S110 7974617 YP_002942579.1 CDS Vapar_0655 NC_012791.1 713101 714234 R PFAM: cupin; KEGG: vei:Veis_4214 cupin 2 domain-containing protein; cupin complement(713101..714234) Variovorax paradoxus S110 7974618 YP_002942580.1 CDS Vapar_0656 NC_012791.1 714254 716587 R catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase complement(714254..716587) Variovorax paradoxus S110 7974619 YP_002942581.1 CDS Vapar_0657 NC_012791.1 716616 717038 R PFAM: thioesterase superfamily protein; KEGG: rso:RSc1827 4-hydroxybenzoyl-CoA thioesterase protein; thioesterase superfamily protein complement(716616..717038) Variovorax paradoxus S110 7974620 YP_002942582.1 CDS Vapar_0658 NC_012791.1 717054 718553 R Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit B complement(717054..718553) Variovorax paradoxus S110 7974621 YP_002942583.1 CDS Vapar_0659 NC_012791.1 718543 720810 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rso:RSc1829 indolepyruvate ferredoxin alpha subunit oxidoreductase protein; indolepyruvate ferredoxin oxidoreductase complement(718543..720810) Variovorax paradoxus S110 7974622 YP_002942584.1 CDS Vapar_0660 NC_012791.1 721813 722712 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_3324 LysR family transcriptional regulator; LysR family transcriptional regulator complement(721813..722712) Variovorax paradoxus S110 7974623 YP_002942585.1 CDS Vapar_0661 NC_012791.1 722888 723499 D PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH01278 glutathione S-transferase protein; glutathione S-transferase domain-containing protein 722888..723499 Variovorax paradoxus S110 7974624 YP_002942586.1 CDS Vapar_0662 NC_012791.1 723555 725561 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; ferredoxin; KEGG: dac:Daci_3322 oxidoreductase FAD/NAD(P)-binding subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 723555..725561 Variovorax paradoxus S110 7974625 YP_002942587.1 CDS Vapar_0663 NC_012791.1 725621 726007 D PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_5537 transposase IS3/IS911; transposase IS3/IS911 family protein 725621..726007 Variovorax paradoxus S110 7974626 YP_002942588.1 CDS Vapar_0664 NC_012791.1 726004 726351 D PFAM: IS66 Orf2 family protein; KEGG: pol:Bpro_5536 IS66 Orf2 like; IS66 Orf2 family protein 726004..726351 Variovorax paradoxus S110 7974627 YP_002942589.1 CDS Vapar_0665 NC_012791.1 726533 728008 D PFAM: transposase IS66; KEGG: tmz:Tmz1t_0278 transposase IS66; transposase IS66 726533..728008 Variovorax paradoxus S110 7974628 YP_002942590.1 CDS Vapar_0666 NC_012791.1 728047 728574 D KEGG: azo:azo2032 hypothetical protein; hypothetical protein 728047..728574 Variovorax paradoxus S110 7974629 YP_002942591.1 CDS Vapar_0668 NC_012791.1 729091 730362 R PFAM: major facilitator superfamily MFS_1; KEGG: oan:Oant_4009 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(729091..730362) Variovorax paradoxus S110 7974631 YP_002942592.1 CDS Vapar_0669 NC_012791.1 730456 731313 R PFAM: regulatory protein LuxR; GAF domain protein; SMART: regulatory protein LuxR; KEGG: oan:Oant_4005 response regulator receiver protein; GAF modulated LuxR family transcriptional regulator complement(730456..731313) Variovorax paradoxus S110 7974632 YP_002942593.1 CDS Vapar_0670 NC_012791.1 731468 732385 D KEGG: swd:Swoo_0211 phenylacetaldoxime dehydratase; Phenylacetaldoxime dehydratase 731468..732385 Variovorax paradoxus S110 7974633 YP_002942594.1 CDS Vapar_0671 NC_012791.1 732492 733367 D PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: xau:Xaut_3216 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 732492..733367 Variovorax paradoxus S110 7974634 YP_002942595.1 CDS Vapar_0673 NC_012791.1 733791 734474 R KEGG: smt:Smal_0457 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(733791..734474) Variovorax paradoxus S110 7974636 YP_002942596.1 CDS Vapar_0674 NC_012791.1 734651 735598 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0939 LysR family transcriptional regulator; LysR family transcriptional regulator 734651..735598 Variovorax paradoxus S110 7974637 YP_002942597.1 CDS Vapar_0676 NC_012791.1 736039 736527 R KEGG: pol:Bpro_5386 hypothetical protein; hypothetical protein complement(736039..736527) Variovorax paradoxus S110 7974639 YP_002942598.1 CDS Vapar_0678 NC_012791.1 737132 737614 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll6712 ABC transporter permease; binding-protein-dependent transport systems inner membrane component 737132..737614 Variovorax paradoxus S110 7974641 YP_002942599.1 CDS Vapar_0679 NC_012791.1 737961 738605 R KEGG: dar:Daro_1641 hypothetical protein; hypothetical protein complement(737961..738605) Variovorax paradoxus S110 7974642 YP_002942600.1 CDS Vapar_0680 NC_012791.1 739978 741495 R KEGG: net:Neut_1121 hypothetical protein; hypothetical protein complement(739978..741495) Variovorax paradoxus S110 7974643 YP_002942601.1 CDS Vapar_0681 NC_012791.1 742099 742863 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ajs:Ajs_3085 IstB ATP binding domain-containing protein; IstB domain-containing protein ATP-binding protein complement(742099..742863) Variovorax paradoxus S110 7974644 YP_002942602.1 CDS Vapar_0682 NC_012791.1 742860 744473 R PFAM: Integrase catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit complement(742860..744473) Variovorax paradoxus S110 7974645 YP_002942603.1 CDS Vapar_0683 NC_012791.1 744551 744700 R hypothetical protein complement(744551..744700) Variovorax paradoxus S110 7974646 YP_002942604.1 CDS Vapar_0684 NC_012791.1 744697 744915 R KEGG: bte:BTH_I0095 hypothetical protein; hypothetical protein complement(744697..744915) Variovorax paradoxus S110 7974647 YP_002942605.1 CDS Vapar_0685 NC_012791.1 745084 745932 R KEGG: bte:BTH_I0095 hypothetical protein; hypothetical protein complement(745084..745932) Variovorax paradoxus S110 7974648 YP_002942606.1 CDS Vapar_0686 NC_012791.1 745880 747298 R PFAM: integrase family protein; KEGG: bte:BTH_I0094 phage integrase; integrase family protein complement(745880..747298) Variovorax paradoxus S110 7974649 YP_002942607.1 CDS Vapar_0687 NC_012791.1 747748 749049 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: tbd:Tbd_1620 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 747748..749049 Variovorax paradoxus S110 7974650 YP_002942608.1 CDS Vapar_0688 NC_012791.1 749089 749580 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: smd:Smed_5848 activator of HSP90 ATPase 1 family protein; Activator of Hsp90 ATPase 1 family protein complement(749089..749580) Variovorax paradoxus S110 7974651 YP_002942609.1 CDS Vapar_0689 NC_012791.1 749790 750512 D PFAM: dienelactone hydrolase; KEGG: mno:Mnod_2323 dienelactone hydrolase; dienelactone hydrolase 749790..750512 Variovorax paradoxus S110 7974652 YP_002942610.1 CDS Vapar_0690 NC_012791.1 750509 750892 D PFAM: protein of unknown function DUF427; KEGG: mes:Meso_2621 protein of unknown function DUF427; hypothetical protein 750509..750892 Variovorax paradoxus S110 7974653 YP_002942611.1 CDS Vapar_0691 NC_012791.1 751021 752109 D PFAM: MscS Mechanosensitive ion channel; KEGG: vei:Veis_0172 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 751021..752109 Variovorax paradoxus S110 7974654 YP_002942612.1 CDS Vapar_0692 NC_012791.1 752094 753482 R KEGG: bcm:Bcenmc03_7050 hypothetical protein; hypothetical protein complement(752094..753482) Variovorax paradoxus S110 7974655 YP_002942613.1 CDS Vapar_0693 NC_012791.1 753551 753943 D PFAM: zinc finger DksA/TraR C4-type; KEGG: pol:Bpro_0100 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 753551..753943 Variovorax paradoxus S110 7974656 YP_002942614.1 CDS Vapar_0694 NC_012791.1 753969 754337 R KEGG: bph:Bphy_4794 hypothetical protein; hypothetical protein complement(753969..754337) Variovorax paradoxus S110 7974657 YP_002942615.1 CDS Vapar_0695 NC_012791.1 754356 754961 R KEGG: bxe:Bxe_C0168 cytochrome C oxidase subunit I; cytochrome C oxidase subunit I complement(754356..754961) Variovorax paradoxus S110 7974658 YP_002942616.1 CDS Vapar_0696 NC_012791.1 754958 756946 R TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; KEGG: bxe:Bxe_C0168 cytochrome C oxidase subunit I; cytochrome C oxidase subunit I complement(754958..756946) Variovorax paradoxus S110 7974659 YP_002942617.1 CDS Vapar_0697 NC_012791.1 756946 757914 R TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C class I; KEGG: bxe:Bxe_C0167 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II complement(756946..757914) Variovorax paradoxus S110 7974660 YP_002942618.1 CDS Vapar_0698 NC_012791.1 757914 758483 R PFAM: cytochrome C class I; KEGG: smd:Smed_6353 cytochrome C class I; cytochrome C class I complement(757914..758483) Variovorax paradoxus S110 7974661 YP_002942619.1 CDS Vapar_0699 NC_012791.1 758480 759328 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: msl:Msil_3386 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein complement(758480..759328) Variovorax paradoxus S110 7974662 YP_002942620.1 CDS Vapar_0700 NC_012791.1 759306 761147 R KEGG: mno:Mnod_2344 PQQ-dependent dehydrogenase, methanol/ethanol family; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; PQQ-dependent dehydrogenase complement(759306..761147) Variovorax paradoxus S110 7974663 YP_002942621.1 CDS Vapar_0701 NC_012791.1 761234 762190 R KEGG: bxe:Bxe_C0170 hypothetical protein; hypothetical protein complement(761234..762190) Variovorax paradoxus S110 7974664 YP_002942622.1 CDS Vapar_0702 NC_012791.1 762378 763457 D PFAM: glycosyl transferase group 1; KEGG: pzu:PHZ_p0023 glycosyltransferase; group 1 glycosyl transferase 762378..763457 Variovorax paradoxus S110 7974665 YP_002942623.1 CDS Vapar_0703 NC_012791.1 763460 765610 D PFAM: Amylo-alpha-16-glucosidase; KEGG: pzu:PHZ_p0022 glycogen debranching enzyme; Amylo-alpha-16-glucosidase 763460..765610 Variovorax paradoxus S110 7974666 YP_002942624.1 CDS Vapar_0704 NC_012791.1 765816 767972 D PFAM: Fibronectin type III domain protein; SMART: LamG domain protein jellyroll fold domain protein; KEGG: rso:RS01652 transmembrane protein; Fibronectin type III domain-containing protein 765816..767972 Variovorax paradoxus S110 7974667 YP_002942625.1 CDS Vapar_0705 NC_012791.1 767982 769088 R PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: bbt:BBta_6492 gluconolactonase; SMP-30/gluconolaconase/LRE domain-containing protein complement(767982..769088) Variovorax paradoxus S110 7974668 YP_002942626.1 CDS Vapar_0706 NC_012791.1 769285 769719 D PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dia:Dtpsy_1821 CBS domain containing protein; CBS domain containing protein 769285..769719 Variovorax paradoxus S110 7974669 YP_002942627.1 CDS Vapar_0707 NC_012791.1 769758 769991 R hypothetical protein complement(769758..769991) Variovorax paradoxus S110 7974670 YP_002942628.1 CDS Vapar_0708 NC_012791.1 770061 772271 R TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; KEGG: mpt:Mpe_A1645 P1 ATPase/HMA domain-containing protein; heavy metal translocating P-type ATPase complement(770061..772271) Variovorax paradoxus S110 7974671 YP_002942629.1 CDS Vapar_0709 NC_012791.1 772392 773915 R PFAM: Amidase; KEGG: pol:Bpro_3826 amidase; Amidase complement(772392..773915) Variovorax paradoxus S110 7974672 YP_002942630.1 CDS Vapar_0710 NC_012791.1 773932 774918 R PFAM: conserved hypothetical protein; KEGG: dia:Dtpsy_1625 hypothetical protein; hypothetical protein complement(773932..774918) Variovorax paradoxus S110 7974673 YP_002942631.1 CDS Vapar_0711 NC_012791.1 775066 775980 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reu:Reut_A1656 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 775066..775980 Variovorax paradoxus S110 7974674 YP_002942632.1 CDS Vapar_0712 NC_012791.1 776084 776461 D PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: lch:Lcho_3566 histone family protein DNA-binding protein; histone family protein DNA-binding protein 776084..776461 Variovorax paradoxus S110 7974675 YP_002942633.1 CDS Vapar_0713 NC_012791.1 776522 777430 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pna:Pnap_2760 LysR family transcriptional regulator; LysR family transcriptional regulator complement(776522..777430) Variovorax paradoxus S110 7974676 YP_002942634.1 CDS Vapar_0714 NC_012791.1 777596 778684 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_1428 transport protein; TRAP dicarboxylate transporter subunit DctP 777596..778684 Variovorax paradoxus S110 7974677 YP_002942635.1 CDS Vapar_0715 NC_012791.1 778681 781650 D KEGG: dar:Daro_1362 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 778681..781650 Variovorax paradoxus S110 7974678 YP_002942636.1 CDS Vapar_0716 NC_012791.1 781680 784085 D KEGG: gbm:Gbem_0081 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; Cache domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 781680..784085 Variovorax paradoxus S110 7974679 YP_002942637.1 CDS Vapar_0717 NC_012791.1 784234 786159 D KEGG: scl:sce0929 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 784234..786159 Variovorax paradoxus S110 7974680 YP_002942638.1 CDS nadE NC_012791.1 786196 787044 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(786196..787044) Variovorax paradoxus S110 7974681 YP_002942639.1 CDS Vapar_0719 NC_012791.1 787062 788240 R PFAM: phospholipase A1; KEGG: dia:Dtpsy_3140 phospholipase A1; phospholipase A(2) complement(787062..788240) Variovorax paradoxus S110 7974682 YP_002942640.1 CDS Vapar_0720 NC_012791.1 788237 788698 R KEGG: ajs:Ajs_3866 hypothetical protein; hypothetical protein complement(788237..788698) Variovorax paradoxus S110 7974683 YP_002942641.1 CDS Vapar_0721 NC_012791.1 788695 790800 R PFAM: UvrD/REP helicase; KEGG: pna:Pnap_0352 UvrD/REP helicase; UvrD/REP helicase complement(788695..790800) Variovorax paradoxus S110 7974684 YP_002942642.1 CDS Vapar_0722 NC_012791.1 790921 791934 D PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_4280 auxin efflux carrier; auxin efflux carrier 790921..791934 Variovorax paradoxus S110 7974685 YP_002942643.1 CDS Vapar_0723 NC_012791.1 791941 792507 R KEGG: smt:Smal_0847 outer membrane autotransporter barrel domain protein; hypothetical protein complement(791941..792507) Variovorax paradoxus S110 7974686 YP_002942644.1 CDS Vapar_0724 NC_012791.1 792849 793058 D hypothetical protein 792849..793058 Variovorax paradoxus S110 7974687 YP_002942645.1 CDS Vapar_0725 NC_012791.1 793055 794290 R PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: eba:ebA6749 transposase; transposase IS116/IS110/IS902 family protein complement(793055..794290) Variovorax paradoxus S110 7974688 YP_002942646.1 CDS Vapar_0726 NC_012791.1 794596 796698 R KEGG: aav:Aave_4471 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; primosomal protein N' complement(794596..796698) Variovorax paradoxus S110 7974689 YP_002942647.1 CDS hemE NC_012791.1 797177 798289 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(797177..798289) Variovorax paradoxus S110 7974690 YP_002942648.1 CDS Vapar_0728 NC_012791.1 798454 799818 R PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_1646 general substrate transporter; general substrate transporter complement(798454..799818) Variovorax paradoxus S110 7974691 YP_002942649.1 CDS Vapar_0729 NC_012791.1 799924 800616 R PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: mpt:Mpe_A1488 hypothetical protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(799924..800616) Variovorax paradoxus S110 7974692 YP_002942650.1 CDS Vapar_0730 NC_012791.1 800710 802863 R KEGG: pna:Pnap_0376 cytochrome C biogenesis protein, transmembrane region; cytochrome C biogenesis protein, transmembrane region complement(800710..802863) Variovorax paradoxus S110 7974530 YP_002942651.1 CDS Vapar_0731 NC_012791.1 802972 803721 R PFAM: threonyl/alanyl tRNA synthetase SAD; KEGG: vei:Veis_0367 threonyl/alanyl tRNA synthetase, SAD; threonyl/alanyl tRNA synthetase SAD complement(802972..803721) Variovorax paradoxus S110 7971783 YP_002942652.1 CDS Vapar_0732 NC_012791.1 803881 805239 D KEGG: pna:Pnap_0395 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 803881..805239 Variovorax paradoxus S110 7971784 YP_002942653.1 CDS Vapar_0734 NC_012791.1 805623 806633 R TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: cvi:CV_1630 oxidoreductase; zinc-binding alcohol dehydrogenase family protein complement(805623..806633) Variovorax paradoxus S110 7971786 YP_002942654.1 CDS Vapar_0735 NC_012791.1 806728 807633 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_5101 LysR family transcriptional regulator; LysR family transcriptional regulator 806728..807633 Variovorax paradoxus S110 7971787 YP_002942655.1 CDS Vapar_0736 NC_012791.1 807630 808427 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: acr:Acry_1424 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(807630..808427) Variovorax paradoxus S110 7971788 YP_002942656.1 CDS Vapar_0737 NC_012791.1 808504 809331 D PFAM: Creatininase; KEGG: rfr:Rfer_3746 creatininase; Creatininase 808504..809331 Variovorax paradoxus S110 7971789 YP_002942657.1 CDS Vapar_0738 NC_012791.1 809639 810616 R PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dia:Dtpsy_3120 pyridoxal-5'-phosphate-dependent protein beta subunit; hypothetical protein complement(809639..810616) Variovorax paradoxus S110 7971790 YP_002942658.1 CDS Vapar_0739 NC_012791.1 810633 811265 R PFAM: lysine exporter (LYSE/YGGA); KEGG: pol:Bpro_4244 lysine exporter protein (LysE/YggA); lysine exporter LysE/YggA complement(810633..811265) Variovorax paradoxus S110 7971791 YP_002942659.1 CDS Vapar_0740 NC_012791.1 811267 811959 R KEGG: pol:Bpro_4243 hypothetical protein; hypothetical protein complement(811267..811959) Variovorax paradoxus S110 7971792 YP_002942660.1 CDS Vapar_0741 NC_012791.1 811972 812907 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pna:Pnap_0400 PhzF family phenazine biosynthesis protein; phenazine biosynthesis protein PhzF family complement(811972..812907) Variovorax paradoxus S110 7971793 YP_002942661.1 CDS Vapar_0742 NC_012791.1 812904 813545 R PFAM: glutathione S-transferase domain; KEGG: aav:Aave_4438 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein complement(812904..813545) Variovorax paradoxus S110 7971794 YP_002942662.1 CDS Vapar_0743 NC_012791.1 813551 814222 R PFAM: lysine exporter (LYSE/YGGA); KEGG: reh:H16_B1958 threonine efflux protein; lysine exporter LysE/YggA complement(813551..814222) Variovorax paradoxus S110 7971795 YP_002942663.1 CDS Vapar_0744 NC_012791.1 814245 814877 R PFAM: ThiJ/PfpI domain protein; KEGG: bcm:Bcenmc03_6451 ThiJ/PfpI domain-containing protein; ThiJ/PfpI domain-containing protein complement(814245..814877) Variovorax paradoxus S110 7971796 YP_002942664.1 CDS Vapar_0745 NC_012791.1 814901 816151 R PFAM: aminotransferase class I and II; KEGG: aav:Aave_4437 GntR family transcriptional regulator; GntR family transcriptional regulator complement(814901..816151) Variovorax paradoxus S110 7971797 YP_002942665.1 CDS Vapar_0746 NC_012791.1 816135 817097 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_4235 protein of unknown function DUF6, transmembrane; hypothetical protein complement(816135..817097) Variovorax paradoxus S110 7971798 YP_002942666.1 CDS Vapar_0747 NC_012791.1 817094 817693 R KEGG: ajs:Ajs_3843 hypothetical protein; hypothetical protein complement(817094..817693) Variovorax paradoxus S110 7971799 YP_002942667.1 CDS Vapar_0748 NC_012791.1 817798 819213 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_4233 GntR family transcriptional regulator; GntR family transcriptional regulator with aminotransferase domain 817798..819213 Variovorax paradoxus S110 7971800 YP_002942668.1 CDS Vapar_0749 NC_012791.1 819302 820018 D KEGG: aav:Aave_4509 hypothetical protein; hypothetical protein 819302..820018 Variovorax paradoxus S110 7971801 YP_002942669.1 CDS Vapar_0750 NC_012791.1 820064 821344 D PFAM: hypothetical protein; KEGG: rfr:Rfer_0622 hypothetical protein; hypothetical protein 820064..821344 Variovorax paradoxus S110 7971802 YP_002942670.1 CDS Vapar_0751 NC_012791.1 821371 822672 R PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_4507 D-amino acid dehydrogenase small subunit; D-amino-acid dehydrogenase complement(821371..822672) Variovorax paradoxus S110 7971803 YP_002942671.1 CDS Vapar_0752 NC_012791.1 823091 824173 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: dia:Dtpsy_0553 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 823091..824173 Variovorax paradoxus S110 7971804 YP_002942672.1 CDS Vapar_0753 NC_012791.1 824170 825060 D KEGG: aav:Aave_4165 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; Male sterility domain; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase 824170..825060 Variovorax paradoxus S110 7971805 YP_002942673.1 CDS Vapar_0754 NC_012791.1 825111 826010 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: pna:Pnap_3489 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 825111..826010 Variovorax paradoxus S110 7971806 YP_002942674.1 CDS Vapar_0755 NC_012791.1 826007 826555 D KEGG: rme:Rmet_2732 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 826007..826555 Variovorax paradoxus S110 7971807 YP_002942675.1 CDS Vapar_0756 NC_012791.1 826548 827435 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: dia:Dtpsy_0560 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(826548..827435) Variovorax paradoxus S110 7971808 YP_002942676.1 CDS Vapar_0757 NC_012791.1 827432 828472 R TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: dia:Dtpsy_0561 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase complement(827432..828472) Variovorax paradoxus S110 7971809 YP_002942677.1 CDS Vapar_0758 NC_012791.1 828614 831700 R PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_0758 glycosyl transferase, group 1; group 1 glycosyl transferase complement(828614..831700) Variovorax paradoxus S110 7971810 YP_002942678.1 CDS Vapar_0759 NC_012791.1 831700 833034 R TIGRFAM: methyltransferase FkbM family; KEGG: acr:Acry_2942 FkbM family methyltransferase; FkbM family methyltransferase complement(831700..833034) Variovorax paradoxus S110 7971811 YP_002942679.1 CDS Vapar_0760 NC_012791.1 833109 834233 R PFAM: glycosyl transferase group 1; KEGG: met:M446_2285 glycosyl transferase group 1; group 1 glycosyl transferase complement(833109..834233) Variovorax paradoxus S110 7971812 YP_002942680.1 CDS Vapar_0761 NC_012791.1 834230 836476 R PFAM: glycosyl transferase group 1; glycosyl transferase family 2; KEGG: dsh:Dshi_3576 glycosyl transferase family protein; group 1 glycosyl transferase complement(834230..836476) Variovorax paradoxus S110 7971813 YP_002942681.1 CDS Vapar_0762 NC_012791.1 836473 837312 R hypothetical protein complement(836473..837312) Variovorax paradoxus S110 7971814 YP_002942682.1 CDS Vapar_0763 NC_012791.1 837587 839764 D PFAM: glycosyl transferase group 1; KEGG: bch:Bcen2424_0882 FkbM family methyltransferase; group 1 glycosyl transferase 837587..839764 Variovorax paradoxus S110 7971815 YP_002942683.1 CDS Vapar_0764 NC_012791.1 839774 840475 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: smt:Smal_0491 ABC transporter; ABC transporter complement(839774..840475) Variovorax paradoxus S110 7971816 YP_002942684.1 CDS Vapar_0765 NC_012791.1 840479 841282 R PFAM: ABC transporter; KEGG: dno:DNO_0335 ABC-2 type transporter family protein; ABC transporter complement(840479..841282) Variovorax paradoxus S110 7971817 YP_002942685.1 CDS Vapar_0766 NC_012791.1 841279 842697 R KEGG: pol:Bpro_3999 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: nucleotidyl transferase; cupin; mannose-6-phosphate isomerase type II; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(841279..842697) Variovorax paradoxus S110 7971818 YP_002942686.1 CDS Vapar_0767 NC_012791.1 842796 844604 D PFAM: glycosyl transferase family 2; KEGG: bcm:Bcenmc03_0849 glycosyl transferase family protein; family 2 glycosyl transferase 842796..844604 Variovorax paradoxus S110 7971819 YP_002942687.1 CDS Vapar_0768 NC_012791.1 844601 845605 D PFAM: glycosyl transferase family 2; KEGG: sml:Smlt3682 glycosyl transferase; family 2 glycosyl transferase 844601..845605 Variovorax paradoxus S110 7971820 YP_002942688.1 CDS Vapar_0769 NC_012791.1 845638 846696 D PFAM: glycosyl transferase family 2; KEGG: xau:Xaut_4231 glycosyl transferase family protein; family 2 glycosyl transferase 845638..846696 Variovorax paradoxus S110 7971821 YP_002942689.1 CDS Vapar_0770 NC_012791.1 846704 848758 R PFAM: acyltransferase 3; KEGG: sus:Acid_1188 acyltransferase 3; acyltransferase 3 complement(846704..848758) Variovorax paradoxus S110 7971822 YP_002942690.1 CDS Vapar_0771 NC_012791.1 848844 849602 R KEGG: reu:Reut_A0724 glycosyl transferase family protein; glycosyl transferase family protein complement(848844..849602) Variovorax paradoxus S110 7971823 YP_002942691.1 CDS Vapar_0772 NC_012791.1 849647 850744 D PFAM: glycosyl transferase family 4; KEGG: pol:Bpro_3998 glycosyl transferase, family 4; glycosyl transferase family protein 849647..850744 Variovorax paradoxus S110 7971824 YP_002942692.1 CDS Vapar_0773 NC_012791.1 850809 851702 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 850809..851702 Variovorax paradoxus S110 7971825 YP_002942693.1 CDS Vapar_0774 NC_012791.1 851713 856143 R PFAM: glycosyl transferase family 2; methyltransferase type 11; glycosyl transferase group 1; KEGG: gbe:GbCGDNIH1_0743 glycosyltransferase; family 2 glycosyl transferase complement(851713..856143) Variovorax paradoxus S110 7971826 YP_002942694.1 CDS Vapar_0775 NC_012791.1 856208 858061 R PFAM: glycosyl transferase family 2; KEGG: met:M446_0315 glycosyl transferase family protein; family 2 glycosyl transferase complement(856208..858061) Variovorax paradoxus S110 7971827 YP_002942695.1 CDS Vapar_0776 NC_012791.1 858215 859252 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: lch:Lcho_3247 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(858215..859252) Variovorax paradoxus S110 7971828 YP_002942696.1 CDS slmA NC_012791.1 859373 860026 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 859373..860026 Variovorax paradoxus S110 7971829 YP_002942697.1 CDS Vapar_0778 NC_012791.1 860144 861667 D PFAM: catalase domain protein; KEGG: bsu:BSU08820 vegetative catalase 1; catalase 860144..861667 Variovorax paradoxus S110 7971830 YP_002942698.1 CDS Vapar_0779 NC_012791.1 861820 862422 D PFAM: protein of unknown function DUF1326; KEGG: pol:Bpro_1658 protein of unknown function DUF1326; hypothetical protein 861820..862422 Variovorax paradoxus S110 7971831 YP_002942699.1 CDS Vapar_0780 NC_012791.1 862415 863212 D KEGG: pol:Bpro_1657 transmembrane protein; transmembrane protein 862415..863212 Variovorax paradoxus S110 7971832 YP_002942700.1 CDS Vapar_0781 NC_012791.1 863205 864092 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RS01739 hypothetical protein; hypothetical protein 863205..864092 Variovorax paradoxus S110 7971833 YP_002942701.1 CDS Vapar_0782 NC_012791.1 864105 865166 R PFAM: malate/L-lactate dehydrogenase; KEGG: vei:Veis_1530 hypothetical protein; hypothetical protein complement(864105..865166) Variovorax paradoxus S110 7971834 YP_002942702.1 CDS Vapar_0783 NC_012791.1 865174 866700 R PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; SAF domain protein; KEGG: pol:Bpro_3967 altronate dehydratase; Galactarate dehydratase complement(865174..866700) Variovorax paradoxus S110 7971835 YP_002942703.1 CDS Vapar_0784 NC_012791.1 866725 868119 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vei:Veis_1538 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(866725..868119) Variovorax paradoxus S110 7971836 YP_002942704.1 CDS Vapar_0785 NC_012791.1 868142 868699 R PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: vei:Veis_1539 tripartite ATP-independent periplasmic transporter DctQ; tripartite ATP-independent periplasmic transporter DctQ component complement(868142..868699) Variovorax paradoxus S110 7971837 YP_002942705.1 CDS Vapar_0786 NC_012791.1 868714 869709 R TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vei:Veis_1540 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(868714..869709) Variovorax paradoxus S110 7971838 YP_002942706.1 CDS Vapar_0787 NC_012791.1 869756 870469 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: vei:Veis_1542 GntR domain-containing protein; GntR family transcriptional regulator complement(869756..870469) Variovorax paradoxus S110 7971839 YP_002942707.1 CDS Vapar_0788 NC_012791.1 870607 871341 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3961 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 870607..871341 Variovorax paradoxus S110 7971840 YP_002942708.1 CDS Vapar_0789 NC_012791.1 871338 872084 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: pol:Bpro_3960 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 871338..872084 Variovorax paradoxus S110 7971841 YP_002942709.1 CDS Vapar_0790 NC_012791.1 872110 872958 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_3959 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 872110..872958 Variovorax paradoxus S110 7971842 YP_002942710.1 CDS Vapar_0791 NC_012791.1 873092 873877 D PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: vei:Veis_1903 UbiC transcription regulator-associated domain-containing protein; GntR family transcriptional regulator 873092..873877 Variovorax paradoxus S110 7971843 YP_002942711.1 CDS Vapar_0792 NC_012791.1 873899 875101 D PFAM: extracellular ligand-binding receptor; KEGG: vei:Veis_1904 extracellular ligand-binding receptor; extracellular ligand-binding receptor 873899..875101 Variovorax paradoxus S110 7971844 YP_002942712.1 CDS Vapar_0793 NC_012791.1 875439 876311 D PFAM: inner-membrane translocator; KEGG: vei:Veis_1905 inner-membrane translocator; inner-membrane translocator 875439..876311 Variovorax paradoxus S110 7971845 YP_002942713.1 CDS Vapar_0794 NC_012791.1 876308 877291 D PFAM: inner-membrane translocator; KEGG: vei:Veis_1906 inner-membrane translocator; inner-membrane translocator 876308..877291 Variovorax paradoxus S110 7971846 YP_002942714.1 CDS Vapar_0795 NC_012791.1 877284 878045 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_1907 ABC transporter; ABC transporter 877284..878045 Variovorax paradoxus S110 7971847 YP_002942715.1 CDS Vapar_0796 NC_012791.1 878042 878752 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_1908 ABC transporter; ABC transporter 878042..878752 Variovorax paradoxus S110 7971848 YP_002942716.1 CDS Vapar_0797 NC_012791.1 878803 879759 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_1909 hypothetical protein; hypothetical protein 878803..879759 Variovorax paradoxus S110 7971849 YP_002942717.1 CDS Vapar_0798 NC_012791.1 879756 881045 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 879756..881045 Variovorax paradoxus S110 7971850 YP_002942718.1 CDS Vapar_0799 NC_012791.1 881042 881557 D TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: vei:Veis_1911 3-isopropylmalate dehydratase, small subunit; 3-isopropylmalate dehydratase, small subunit 881042..881557 Variovorax paradoxus S110 7971851 YP_002942719.1 CDS Vapar_0800 NC_012791.1 881544 882878 D KEGG: met:M446_1932 MmgE/PrpD family protein; MmgE/PrpD family protein 881544..882878 Variovorax paradoxus S110 7971852 YP_002942720.1 CDS Vapar_0801 NC_012791.1 882907 883878 D PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3664 hypothetical protein; hypothetical protein 882907..883878 Variovorax paradoxus S110 7971853 YP_002942721.1 CDS Vapar_0802 NC_012791.1 883881 885566 D PFAM: Hydantoinase B/oxoprolinase; KEGG: vei:Veis_1912 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase 883881..885566 Variovorax paradoxus S110 7971854 YP_002942722.1 CDS Vapar_0803 NC_012791.1 885563 887617 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: vei:Veis_1913 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase 885563..887617 Variovorax paradoxus S110 7971855 YP_002942723.1 CDS Vapar_0804 NC_012791.1 887614 888228 D PFAM: isochorismatase hydrolase; KEGG: vei:Veis_1914 isochorismatase hydrolase; isochorismatase hydrolase 887614..888228 Variovorax paradoxus S110 7971856 YP_002942724.1 CDS Vapar_0805 NC_012791.1 888225 889640 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: vei:Veis_1915 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 888225..889640 Variovorax paradoxus S110 7971857 YP_002942725.1 CDS Vapar_0806 NC_012791.1 889637 890500 D KEGG: vei:Veis_1916 isocitrate lyase family protein; isocitrate lyase family protein 889637..890500 Variovorax paradoxus S110 7971858 YP_002942726.1 CDS Vapar_0807 NC_012791.1 890513 891397 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mms:mma_0767 LysR family transcriptional regulator; LysR family transcriptional regulator complement(890513..891397) Variovorax paradoxus S110 7971859 YP_002942727.1 CDS Vapar_0808 NC_012791.1 891528 892286 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; KEGG: spe:Spro_3865 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 891528..892286 Variovorax paradoxus S110 7971860 YP_002942728.1 CDS Vapar_0809 NC_012791.1 892419 893120 D PFAM: regulatory protein TetR; KEGG: pol:Bpro_3958 TetR family transcriptional regulator; TetR family transcriptional regulator 892419..893120 Variovorax paradoxus S110 7971861 YP_002942729.1 CDS Vapar_0810 NC_012791.1 893181 894977 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: dia:Dtpsy_0571 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 893181..894977 Variovorax paradoxus S110 7971862 YP_002942730.1 CDS Vapar_0811 NC_012791.1 895020 895454 D KEGG: aav:Aave_4088 hypothetical protein; hypothetical protein 895020..895454 Variovorax paradoxus S110 7971863 YP_002942731.1 CDS Vapar_0812 NC_012791.1 895491 897914 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: ajs:Ajs_0594 3-hydroxyacyl-CoA dehydrogenase; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 895491..897914 Variovorax paradoxus S110 7969578 YP_002942732.1 CDS Vapar_0813 NC_012791.1 897978 898397 D PFAM: protein of unknown function DUF559; KEGG: eum:ECUMN_1594 hypothetical protein; hypothetical protein 897978..898397 Variovorax paradoxus S110 7972028 YP_002942733.1 CDS Vapar_0814 NC_012791.1 898394 899596 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 898394..899596 Variovorax paradoxus S110 7972029 YP_002942734.1 CDS Vapar_0815 NC_012791.1 899646 900542 D KEGG: dia:Dtpsy_0575 hydrolase; hydrolase 899646..900542 Variovorax paradoxus S110 7972030 YP_002942735.1 CDS Vapar_0816 NC_012791.1 900575 901408 D KEGG: dia:Dtpsy_0576 hypothetical protein; hypothetical protein 900575..901408 Variovorax paradoxus S110 7972031 YP_002942736.1 CDS Vapar_0817 NC_012791.1 901434 902246 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl01_3907 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 901434..902246 Variovorax paradoxus S110 7972032 YP_002942737.1 CDS Vapar_0818 NC_012791.1 902248 902379 D hypothetical protein 902248..902379 Variovorax paradoxus S110 7972033 YP_002942738.1 CDS Vapar_0819 NC_012791.1 902390 902983 D PFAM: DSBA oxidoreductase; KEGG: pfl:PFL_4150 2-hydroxychromene-2-carboxylate isomerase; DSBA oxidoreductase 902390..902983 Variovorax paradoxus S110 7972034 YP_002942739.1 CDS Vapar_0820 NC_012791.1 903044 903808 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 903044..903808 Variovorax paradoxus S110 7972035 YP_002942740.1 CDS Vapar_0821 NC_012791.1 904004 905110 D PFAM: extracellular ligand-binding receptor; KEGG: pol:Bpro_5150 extracellular ligand-binding receptor; extracellular ligand-binding receptor 904004..905110 Variovorax paradoxus S110 7972036 YP_002942741.1 CDS Vapar_0822 NC_012791.1 905117 905542 R PFAM: thioesterase superfamily protein; KEGG: aav:Aave_4080 thioesterase superfamily protein; thioesterase superfamily protein complement(905117..905542) Variovorax paradoxus S110 7972037 YP_002942742.1 CDS Vapar_0823 NC_012791.1 905584 907461 D PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: pna:Pnap_3460 ABC transporter; ABC transporter 905584..907461 Variovorax paradoxus S110 7972038 YP_002942743.1 CDS Vapar_0824 NC_012791.1 907498 908436 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: aav:Aave_1141 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 907498..908436 Variovorax paradoxus S110 7972039 YP_002942744.1 CDS Vapar_0825 NC_012791.1 908548 909990 R PFAM: Amidase; KEGG: pap:PSPA7_4912 amidase; Amidase complement(908548..909990) Variovorax paradoxus S110 7972040 YP_002942745.1 CDS Vapar_0826 NC_012791.1 910052 911041 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rfr:Rfer_3465 LysR family transcriptional regulator; LysR family transcriptional regulator 910052..911041 Variovorax paradoxus S110 7972041 YP_002942746.1 CDS Vapar_0827 NC_012791.1 911236 912687 D PFAM: fumarate lyase; KEGG: dia:Dtpsy_1365 fumarate lyase; fumarate lyase 911236..912687 Variovorax paradoxus S110 7972042 YP_002942747.1 CDS Vapar_0828 NC_012791.1 912859 913761 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: aav:Aave_4073 extracellular solute-binding protein; family 3 extracellular solute-binding protein 912859..913761 Variovorax paradoxus S110 7972043 YP_002942748.1 CDS Vapar_0829 NC_012791.1 913886 914620 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4072 polar amino acid ABC transporter inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 913886..914620 Variovorax paradoxus S110 7972044 YP_002942749.1 CDS Vapar_0830 NC_012791.1 914622 915311 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4071 polar amino acid ABC transporter inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 914622..915311 Variovorax paradoxus S110 7972045 YP_002942750.1 CDS Vapar_0831 NC_012791.1 915337 916086 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aav:Aave_4070 ABC transporter-related protein; ABC transporter 915337..916086 Variovorax paradoxus S110 7972046 YP_002942751.1 CDS Vapar_0832 NC_012791.1 916145 917086 R PFAM: inosine/uridine-preferring nucleoside hydrolase; KEGG: pau:PA14_01760 nonspecific ribonucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase complement(916145..917086) Variovorax paradoxus S110 7972047 YP_002942752.1 CDS Vapar_0833 NC_012791.1 917133 918170 R TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pna:Pnap_3454 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(917133..918170) Variovorax paradoxus S110 7972048 YP_002942753.1 CDS Vapar_0834 NC_012791.1 918563 919861 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pna:Pnap_3453 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(918563..919861) Variovorax paradoxus S110 7972049 YP_002942754.1 CDS Vapar_0835 NC_012791.1 919858 920442 R PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pna:Pnap_3452 tripartite ATP-independent periplasmic transporter DctQ; tripartite ATP-independent periplasmic transporter DctQ component complement(919858..920442) Variovorax paradoxus S110 7972050 YP_002942755.1 CDS Vapar_0836 NC_012791.1 920559 921581 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_1399 hypothetical protein; hypothetical protein complement(920559..921581) Variovorax paradoxus S110 7972051 YP_002942756.1 CDS Vapar_0837 NC_012791.1 921640 923583 R PFAM: AMP-dependent synthetase and ligase; KEGG: dac:Daci_3885 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(921640..923583) Variovorax paradoxus S110 7972052 YP_002942757.1 CDS Vapar_0838 NC_012791.1 923636 924634 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B1448 probable extra-cytoplasmic solute receptor; hypothetical protein complement(923636..924634) Variovorax paradoxus S110 7972053 YP_002942758.1 CDS Vapar_0839 NC_012791.1 924672 925880 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rfr:Rfer_2590 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(924672..925880) Variovorax paradoxus S110 7972054 YP_002942759.1 CDS Vapar_0840 NC_012791.1 925945 926766 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(925945..926766) Variovorax paradoxus S110 7972055 YP_002942760.1 CDS Vapar_0841 NC_012791.1 926763 927905 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: rfr:Rfer_2592 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(926763..927905) Variovorax paradoxus S110 7972056 YP_002942761.1 CDS Vapar_0842 NC_012791.1 927919 929127 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rfr:Rfer_2593 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(927919..929127) Variovorax paradoxus S110 7972057 YP_002942762.1 CDS Vapar_0843 NC_012791.1 929195 930385 R KEGG: rfr:Rfer_2594 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase; acetyl-CoA acetyltransferase complement(929195..930385) Variovorax paradoxus S110 7972058 YP_002942763.1 CDS Vapar_0844 NC_012791.1 930415 932550 R PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: rfr:Rfer_2595 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-binding 3-hydroxyacyl-CoA dehydrogenase complement(930415..932550) Variovorax paradoxus S110 7972059 YP_002942764.1 CDS Vapar_0845 NC_012791.1 932704 933636 D PFAM: LysR substrate-binding; regulatory protein LysR; regulatory protein MarR; KEGG: bxe:Bxe_A1392 LysR family transcriptional regulator; MarR family transcriptional regulator 932704..933636 Variovorax paradoxus S110 7972060 YP_002942765.1 CDS Vapar_0846 NC_012791.1 933691 934212 D PFAM: Ureidoglycolate hydrolase; KEGG: bvi:Bcep1808_0616 ureidoglycolate hydrolase; Ureidoglycolate hydrolase 933691..934212 Variovorax paradoxus S110 7972061 YP_002942766.1 CDS Vapar_0847 NC_012791.1 934213 934575 R PFAM: TfoX domain protein; KEGG: bja:blr4345 hypothetical protein; TfoX domain-containing protein complement(934213..934575) Variovorax paradoxus S110 7972062 YP_002942767.1 CDS Vapar_0848 NC_012791.1 934652 935833 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(934652..935833) Variovorax paradoxus S110 7972063 YP_002942768.1 CDS Vapar_0849 NC_012791.1 935868 936908 R KEGG: pol:Bpro_0384 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase complement(935868..936908) Variovorax paradoxus S110 7972064 YP_002942769.1 CDS Vapar_0850 NC_012791.1 936913 937950 R KEGG: pol:Bpro_0383 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase complement(936913..937950) Variovorax paradoxus S110 7972065 YP_002942770.1 CDS Vapar_0851 NC_012791.1 938208 939125 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2063 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(938208..939125) Variovorax paradoxus S110 7972066 YP_002942771.1 CDS Vapar_0852 NC_012791.1 939130 940083 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0381 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(939130..940083) Variovorax paradoxus S110 7972067 YP_002942772.1 CDS Vapar_0853 NC_012791.1 940083 941741 R PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_2065 extracellular solute-binding protein; family 5 extracellular solute-binding protein complement(940083..941741) Variovorax paradoxus S110 7972068 YP_002942773.1 CDS Vapar_0854 NC_012791.1 941837 942868 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 941837..942868 Variovorax paradoxus S110 7972069 YP_002942774.1 CDS Vapar_0855 NC_012791.1 942868 943686 D PFAM: protein of unknown function DUF88; KEGG: pna:Pnap_3450 hypothetical protein; hypothetical protein 942868..943686 Variovorax paradoxus S110 7972070 YP_002942775.1 CDS Vapar_0856 NC_012791.1 943900 944856 D PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: vei:Veis_4477 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 943900..944856 Variovorax paradoxus S110 7972071 YP_002942776.1 CDS Vapar_0857 NC_012791.1 944899 945726 D PFAM: protein of unknown function DUF88; KEGG: mpt:Mpe_A0449 hypothetical protein; hypothetical protein 944899..945726 Variovorax paradoxus S110 7972072 YP_002942777.1 CDS Vapar_0858 NC_012791.1 945723 946463 D KEGG: aav:Aave_4317 transmembrane protein; transmembrane protein 945723..946463 Variovorax paradoxus S110 7972073 YP_002942778.1 CDS Vapar_0859 NC_012791.1 946616 947488 D metalloprotease; heat shock protein HtpX 946616..947488 Variovorax paradoxus S110 7972074 YP_002942779.1 CDS Vapar_0860 NC_012791.1 947569 948114 R KEGG: eba:ebA1714 hypothetical protein; hypothetical protein complement(947569..948114) Variovorax paradoxus S110 7972075 YP_002942780.1 CDS Vapar_0861 NC_012791.1 948111 948554 R hypothetical protein complement(948111..948554) Variovorax paradoxus S110 7972076 YP_002942781.1 CDS Vapar_0862 NC_012791.1 948700 949587 R PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: pol:Bpro_1033 hypothetical protein; ProQ activator of osmoprotectant transporter ProP complement(948700..949587) Variovorax paradoxus S110 7972077 YP_002942782.1 CDS Vapar_0863 NC_012791.1 949644 950273 R PFAM: flavin reductase domain protein FMN-binding; KEGG: pfo:Pfl01_4462 hypothetical protein; flavin reductase FMN-binding protein complement(949644..950273) Variovorax paradoxus S110 7972078 YP_002942783.1 CDS Vapar_0864 NC_012791.1 950285 951925 R PFAM: FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_1049 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(950285..951925) Variovorax paradoxus S110 7972079 YP_002942784.1 CDS Vapar_0865 NC_012791.1 951998 952918 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: reh:H16_B2378 cysteine synthase; cysteine synthase complement(951998..952918) Variovorax paradoxus S110 7972080 YP_002942785.1 CDS Vapar_0866 NC_012791.1 953464 953943 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bpe:BP2664 MarR family transcriptional regulator; MarR family transcriptional regulator 953464..953943 Variovorax paradoxus S110 7972082 YP_002942786.1 CDS Vapar_0867 NC_012791.1 953944 956022 D PFAM: Fusaric acid resistance protein conserved region; KEGG: bbr:BB3081 hypothetical protein; fusaric acid resistance protein 953944..956022 Variovorax paradoxus S110 7972083 YP_002942787.1 CDS Vapar_0868 NC_012791.1 956019 956225 D PFAM: protein of unknown function DUF1656; KEGG: bav:BAV2023 component of multidrug efflux system; hypothetical protein 956019..956225 Variovorax paradoxus S110 7972084 YP_002942788.1 CDS Vapar_0869 NC_012791.1 956236 957171 D PFAM: secretion protein HlyD family protein; KEGG: bbr:BB3083 HlyD family secretion protein; secretion protein HlyD family protein 956236..957171 Variovorax paradoxus S110 7972085 YP_002942789.1 CDS Vapar_0870 NC_012791.1 957177 958658 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bav:BAV2025 outer membrane multidrug efflux protein; NodT family RND efflux system outer membrane lipoprotein 957177..958658 Variovorax paradoxus S110 7972086 YP_002942790.1 CDS Vapar_0871 NC_012791.1 958661 959875 D TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bpt:Bpet2972 MFS family transporter; Bcr/CflA subfamily drug resistance transporter 958661..959875 Variovorax paradoxus S110 7972087 YP_002942791.1 CDS Vapar_0872 NC_012791.1 959886 960434 R KEGG: GE23771 gene product from transcript GE23771-RA; hypothetical protein complement(959886..960434) Variovorax paradoxus S110 7972088 YP_002942792.1 CDS Vapar_0873 NC_012791.1 960493 961206 R PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: pol:Bpro_1128 RNA-binding S4; RNA-binding S4 domain-containing protein complement(960493..961206) Variovorax paradoxus S110 7972089 YP_002942793.1 CDS Vapar_0874 NC_012791.1 961203 962876 R PFAM: beta-lactamase domain protein; NUDIX hydrolase; KEGG: vei:Veis_1888 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein complement(961203..962876) Variovorax paradoxus S110 7972090 YP_002942794.1 CDS Vapar_0875 NC_012791.1 962996 964039 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_4503 hypothetical protein; hypothetical protein 962996..964039 Variovorax paradoxus S110 7972091 YP_002942795.1 CDS Vapar_0876 NC_012791.1 964061 964981 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0000447 permease protein; hypothetical protein complement(964061..964981) Variovorax paradoxus S110 7972092 YP_002942796.1 CDS Vapar_0878 NC_012791.1 966444 966728 D hypothetical protein 966444..966728 Variovorax paradoxus S110 7972094 YP_002942797.1 CDS Vapar_0879 NC_012791.1 966783 967526 D KEGG: pna:Pnap_3997 hypothetical protein; hypothetical protein 966783..967526 Variovorax paradoxus S110 7972095 YP_002942798.1 CDS Vapar_0880 NC_012791.1 967735 967965 D KEGG: cti:RALTA_A1078 lipoprotein; lipoprotein 967735..967965 Variovorax paradoxus S110 7972096 YP_002942799.1 CDS Vapar_0881 NC_012791.1 968010 970376 D KEGG: bch:Bcen2424_5534 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756; phosphocholine-specific phospholipase C 968010..970376 Variovorax paradoxus S110 7972097 YP_002942800.1 CDS Vapar_0882 NC_012791.1 970399 971370 R PFAM: esterase; KEGG: ank:AnaeK_2349 esterase; esterase complement(970399..971370) Variovorax paradoxus S110 7972098 YP_002942801.1 CDS Vapar_0883 NC_012791.1 971762 972574 D PFAM: protein of unknown function DUF81; KEGG: mex:Mext_3780 hypothetical protein; hypothetical protein 971762..972574 Variovorax paradoxus S110 7972099 YP_002942802.1 CDS Vapar_0884 NC_012791.1 972638 972997 D hypothetical protein 972638..972997 Variovorax paradoxus S110 7972100 YP_002942803.1 CDS Vapar_0886 NC_012791.1 973257 974198 D PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pzu:PHZ_c0963 transcriptional regulator, AraC type; AraC family transcriptional regulator 973257..974198 Variovorax paradoxus S110 7972102 YP_002942804.1 CDS Vapar_0887 NC_012791.1 974328 974618 D PFAM: antibiotic biosynthesis monooxygenase; KEGG: cvi:CV_0680 hypothetical protein; antibiotic biosynthesis monooxygenase 974328..974618 Variovorax paradoxus S110 7972103 YP_002942805.1 CDS Vapar_0888 NC_012791.1 974888 976210 R KEGG: abc:ACICU_00113 hypothetical protein; hypothetical protein complement(974888..976210) Variovorax paradoxus S110 7972104 YP_002942806.1 CDS Vapar_0889 NC_012791.1 976489 977760 R KEGG: esa:ESA_00299 hypothetical protein; hypothetical protein complement(976489..977760) Variovorax paradoxus S110 7972105 YP_002942807.1 CDS Vapar_0890 NC_012791.1 977773 978777 R KEGG: esa:ESA_00298 hypothetical protein; hypothetical protein complement(977773..978777) Variovorax paradoxus S110 7972106 YP_002942808.1 CDS Vapar_0891 NC_012791.1 978904 979668 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ajs:Ajs_3085 IstB ATP binding domain-containing protein; IstB domain-containing protein ATP-binding protein complement(978904..979668) Variovorax paradoxus S110 7972107 YP_002942809.1 CDS Vapar_0892 NC_012791.1 979665 981278 R PFAM: Integrase catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit complement(979665..981278) Variovorax paradoxus S110 7972108 YP_002942810.1 CDS Vapar_0893 NC_012791.1 981364 981675 R KEGG: esa:ESA_00298 hypothetical protein; hypothetical protein complement(981364..981675) Variovorax paradoxus S110 7969579 YP_002942811.1 CDS Vapar_0894 NC_012791.1 981713 984373 R TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_2840 rhs element Vgr protein; type VI secretion system Vgr family protein complement(981713..984373) Variovorax paradoxus S110 7970069 YP_002942812.1 CDS Vapar_0895 NC_012791.1 984819 986954 D KEGG: dac:Daci_0716 hypothetical protein; hypothetical protein 984819..986954 Variovorax paradoxus S110 7970070 YP_002942813.1 CDS Vapar_0896 NC_012791.1 986917 987855 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_1294 LysR family transcriptional regulator; LysR family transcriptional regulator complement(986917..987855) Variovorax paradoxus S110 7970071 YP_002942814.1 CDS Vapar_0897 NC_012791.1 987917 988294 D KEGG: dia:Dtpsy_0855 hypothetical protein; hypothetical protein 987917..988294 Variovorax paradoxus S110 7970072 YP_002942815.1 CDS Vapar_0898 NC_012791.1 988312 988971 D PFAM: DSBA oxidoreductase; KEGG: atc:AGR_pAT_622 hypothetical protein; DSBA oxidoreductase 988312..988971 Variovorax paradoxus S110 7970073 YP_002942816.1 CDS dapF NC_012791.1 988979 989863 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 988979..989863 Variovorax paradoxus S110 7970074 YP_002942817.1 CDS Vapar_0900 NC_012791.1 989860 990558 D PFAM: protein of unknown function DUF484; KEGG: rfr:Rfer_3443 hypothetical protein; hypothetical protein 989860..990558 Variovorax paradoxus S110 7970075 YP_002942818.1 CDS Vapar_0901 NC_012791.1 990588 991193 D PFAM: protein of unknown function DUF218; KEGG: nmc:NMC2142 periplasmic protein; hypothetical protein 990588..991193 Variovorax paradoxus S110 7970076 YP_002942819.1 CDS Vapar_0902 NC_012791.1 991177 992247 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pol:Bpro_1060 phage integrase; integrase family protein 991177..992247 Variovorax paradoxus S110 7970077 YP_002942820.1 CDS Vapar_0903 NC_012791.1 992248 993468 D KEGG: aav:Aave_0805 SAM-dependent methyltransferase; SAM-dependent methyltransferase 992248..993468 Variovorax paradoxus S110 7970078 YP_002942821.1 CDS Vapar_0904 NC_012791.1 993554 994603 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: aav:Aave_0807 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K 993554..994603 Variovorax paradoxus S110 7970079 YP_002942822.1 CDS Vapar_0905 NC_012791.1 994730 996247 R PFAM: protein of unknown function DUF945; KEGG: dac:Daci_4282 hypothetical protein; hypothetical protein complement(994730..996247) Variovorax paradoxus S110 7970080 YP_002942823.1 CDS Vapar_0906 NC_012791.1 996965 997588 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: vei:Veis_4557 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 996965..997588 Variovorax paradoxus S110 7970081 YP_002942824.1 CDS Vapar_0907 NC_012791.1 997634 999316 D KEGG: pol:Bpro_1065 hypothetical protein; hypothetical protein 997634..999316 Variovorax paradoxus S110 7970082 YP_002942825.1 CDS Vapar_0908 NC_012791.1 999391 999936 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 999391..999936 Variovorax paradoxus S110 7970083 YP_002942826.1 CDS hslU NC_012791.1 999939 1001267 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 999939..1001267 Variovorax paradoxus S110 7970084 YP_002942827.1 CDS Vapar_0910 NC_012791.1 1001538 1001966 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1001538..1001966 Variovorax paradoxus S110 7970085 YP_002942828.1 CDS mraW NC_012791.1 1001975 1002898 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dia:Dtpsy_2988 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 1001975..1002898 Variovorax paradoxus S110 7970086 YP_002942829.1 CDS Vapar_0912 NC_012791.1 1002900 1003247 D TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL; KEGG: aav:Aave_0814 cell division protein FtsL; cell division protein FtsL 1002900..1003247 Variovorax paradoxus S110 7970087 YP_002942830.1 CDS Vapar_0913 NC_012791.1 1003244 1004992 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: pol:Bpro_1069 peptidoglycan synthetase FtsI; peptidoglycan glycosyltransferase 1003244..1004992 Variovorax paradoxus S110 7970088 YP_002942831.1 CDS murE NC_012791.1 1004995 1006557 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1004995..1006557 Variovorax paradoxus S110 7970089 YP_002942832.1 CDS Vapar_0915 NC_012791.1 1006569 1007984 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: ajs:Ajs_3674 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 1006569..1007984 Variovorax paradoxus S110 7970090 YP_002942833.1 CDS mraY NC_012791.1 1008000 1009178 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1008000..1009178 Variovorax paradoxus S110 7970091 YP_002942834.1 CDS Vapar_0917 NC_012791.1 1009192 1011315 D TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: aav:Aave_0819 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine/D-glutamate ligase 1009192..1011315 Variovorax paradoxus S110 7970092 YP_002942835.1 CDS Vapar_0918 NC_012791.1 1011312 1012610 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: aav:Aave_0820 cell division protein FtsW; cell division protein FtsW 1011312..1012610 Variovorax paradoxus S110 7970093 YP_002942836.1 CDS murG NC_012791.1 1012607 1013671 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1012607..1013671 Variovorax paradoxus S110 7970094 YP_002942837.1 CDS murC NC_012791.1 1013668 1015125 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1013668..1015125 Variovorax paradoxus S110 7970095 YP_002942838.1 CDS ddl NC_012791.1 1015122 1016093 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1015122..1016093 Variovorax paradoxus S110 7970096 YP_002942839.1 CDS Vapar_0922 NC_012791.1 1016096 1016884 D PFAM: cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type; KEGG: dac:Daci_1473 polypeptide-transport-associated domain-containing protein; cell division protein FtsQ 1016096..1016884 Variovorax paradoxus S110 7970097 YP_002942840.1 CDS Vapar_0923 NC_012791.1 1016908 1018137 D TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: aav:Aave_0825 cell division protein FtsA; cell division protein FtsA 1016908..1018137 Variovorax paradoxus S110 7970098 YP_002942841.1 CDS Vapar_0924 NC_012791.1 1018306 1019526 D TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: pol:Bpro_1080 cell division protein FtsZ; cell division protein FtsZ 1018306..1019526 Variovorax paradoxus S110 7970099 YP_002942842.1 CDS lpxC NC_012791.1 1019732 1020655 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1019732..1020655 Variovorax paradoxus S110 7970100 YP_002942843.1 CDS Vapar_0926 NC_012791.1 1020669 1020845 D KEGG: pol:Bpro_1082 hypothetical protein; hypothetical protein 1020669..1020845 Variovorax paradoxus S110 7970101 YP_002942844.1 CDS Vapar_0927 NC_012791.1 1020917 1021399 D KEGG: bja:bll0836 hypothetical protein; hypothetical protein 1020917..1021399 Variovorax paradoxus S110 7970102 YP_002942845.1 CDS Vapar_0928 NC_012791.1 1021412 1022371 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sil:SPO3530 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1021412..1022371) Variovorax paradoxus S110 7970103 YP_002942846.1 CDS Vapar_0929 NC_012791.1 1022484 1023806 D PFAM: glycine hydroxymethyltransferase; aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sil:SPO3529 serine hydroxymethyltransferase; glycine hydroxymethyltransferase 1022484..1023806 Variovorax paradoxus S110 7970104 YP_002942847.1 CDS ruvC NC_012791.1 1023808 1024356 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(1023808..1024356) Variovorax paradoxus S110 7970105 YP_002942848.1 CDS Vapar_0931 NC_012791.1 1024358 1025347 R PFAM: phosphatidate cytidylyltransferase; KEGG: pol:Bpro_1084 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(1024358..1025347) Variovorax paradoxus S110 7970106 YP_002942849.1 CDS Vapar_0932 NC_012791.1 1025599 1026435 R PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: aav:Aave_0835 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1025599..1026435) Variovorax paradoxus S110 7970107 YP_002942850.1 CDS Vapar_0933 NC_012791.1 1026479 1026925 D KEGG: dac:Daci_2221 hypothetical protein; hypothetical protein 1026479..1026925 Variovorax paradoxus S110 7970108 YP_002942851.1 CDS Vapar_0934 NC_012791.1 1026870 1027613 R TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: aav:Aave_0840 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase complement(1026870..1027613) Variovorax paradoxus S110 7970109 YP_002942852.1 CDS Vapar_0935 NC_012791.1 1027610 1028467 R TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; KEGG: aav:Aave_0841 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(1027610..1028467) Variovorax paradoxus S110 7970110 YP_002942853.1 CDS Vapar_0936 NC_012791.1 1028489 1029340 R TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like; TonB family protein complement(1028489..1029340) Variovorax paradoxus S110 7970111 YP_002942854.1 CDS Vapar_0937 NC_012791.1 1029378 1031438 R PFAM: ribonuclease II; KEGG: ajs:Ajs_3654 ribonuclease II; ribonuclease II complement(1029378..1031438) Variovorax paradoxus S110 7970112 YP_002942855.1 CDS Vapar_0938 NC_012791.1 1031503 1032096 R PFAM: protein of unknown function UPF0227; KEGG: rfr:Rfer_3375 hypothetical protein; hypothetical protein complement(1031503..1032096) Variovorax paradoxus S110 7970113 YP_002942856.1 CDS Vapar_0939 NC_012791.1 1032396 1033139 D PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: rfr:Rfer_3373 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator 1032396..1033139 Variovorax paradoxus S110 7970114 YP_002942857.1 CDS Vapar_0940 NC_012791.1 1033157 1035001 D PFAM: ATP-binding region ATPase domain protein; KEGG: rfr:Rfer_3372 signal transduction histidine kinase; signal transduction histidine kinase 1033157..1035001 Variovorax paradoxus S110 7970115 YP_002942858.1 CDS Vapar_0941 NC_012791.1 1035034 1036188 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pol:Bpro_1091 rod shape-determining protein RodA; rod shape-determining protein RodA 1035034..1036188 Variovorax paradoxus S110 7970116 YP_002942859.1 CDS Vapar_0942 NC_012791.1 1036242 1037702 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pol:Bpro_1093 Microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62; peptidase U62 modulator of DNA gyrase 1036242..1037702 Variovorax paradoxus S110 7970117 YP_002942860.1 CDS Vapar_0943 NC_012791.1 1037750 1038286 D KEGG: xcv:XCV3468 secreted protein; hypothetical protein 1037750..1038286 Variovorax paradoxus S110 7970118 YP_002942861.1 CDS Vapar_0944 NC_012791.1 1038513 1039631 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1038513..1039631 Variovorax paradoxus S110 7970119 YP_002942862.1 CDS Vapar_0945 NC_012791.1 1039641 1040150 R PFAM: protein of unknown function DUF985; KEGG: pol:Bpro_2150 protein of unknown function DUF985; hypothetical protein complement(1039641..1040150) Variovorax paradoxus S110 7970120 YP_002942863.1 CDS Vapar_0946 NC_012791.1 1040147 1041559 R TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pna:Pnap_3395 UDP-N-acetylmuramate; UDP-N-acetylmuramate complement(1040147..1041559) Variovorax paradoxus S110 7970121 YP_002942864.1 CDS Vapar_0947 NC_012791.1 1041662 1042261 D KEGG: aav:Aave_0855 hypothetical protein; hypothetical protein 1041662..1042261 Variovorax paradoxus S110 7970122 YP_002942865.1 CDS Vapar_0948 NC_012791.1 1042262 1042810 D PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: pol:Bpro_1098 thioredoxin family protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 1042262..1042810 Variovorax paradoxus S110 7970123 YP_002942866.1 CDS Vapar_0949 NC_012791.1 1042910 1043371 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: aav:Aave_0857 biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1042910..1043371 Variovorax paradoxus S110 7970124 YP_002942867.1 CDS Vapar_0950 NC_012791.1 1043374 1044723 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; carbamoyl-phosphate synthetase large chain domain protein; KEGG: aav:Aave_0858 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 1043374..1044723 Variovorax paradoxus S110 7970125 YP_002942868.1 CDS prmA NC_012791.1 1044740 1045624 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 1044740..1045624 Variovorax paradoxus S110 7970126 YP_002942869.1 CDS Vapar_0952 NC_012791.1 1045698 1047041 D TIGRFAM: MJ0042 family finger-like protein; KEGG: dac:Daci_1497 zinc finger-domain-containing protein; hypothetical protein 1045698..1047041 Variovorax paradoxus S110 7970127 YP_002942870.1 CDS Vapar_0953 NC_012791.1 1047100 1048002 D PFAM: PfkB domain protein; KEGG: pna:Pnap_3388 ribokinase-like domain-containing protein; PfkB domain-containing protein 1047100..1048002 Variovorax paradoxus S110 7970128 YP_002942871.1 CDS Vapar_0954 NC_012791.1 1048085 1048609 R KEGG: cti:RALTA_A2653 histone H1/H5 family protein, HCT subfamily; histone H1/H5 family protein, HCT subfamily complement(1048085..1048609) Variovorax paradoxus S110 7970129 YP_002942872.1 CDS Vapar_0955 NC_012791.1 1048810 1049985 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta complement(1048810..1049985) Variovorax paradoxus S110 7970130 YP_002942873.1 CDS Vapar_0956 NC_012791.1 1050164 1053079 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1050164..1053079) Variovorax paradoxus S110 7970131 YP_002942874.1 CDS Vapar_0957 NC_012791.1 1053430 1054038 R PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: pol:Bpro_1109 N-acetyl-anhydromuranmyl-L-alanine amidase; N-acetyl-anhydromuranmyl-L-alanine amidase complement(1053430..1054038) Variovorax paradoxus S110 7970132 YP_002942875.1 CDS Vapar_0958 NC_012791.1 1054025 1055566 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: aav:Aave_0866 two component, sigma54 specific, fis family transcriptional regulator; two component sigma-54 specific Fis family transcriptional regulator complement(1054025..1055566) Variovorax paradoxus S110 7970133 YP_002942876.1 CDS Vapar_0959 NC_012791.1 1055592 1057292 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_1111 periplasmic sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(1055592..1057292) Variovorax paradoxus S110 7970134 YP_002942877.1 CDS Vapar_0960 NC_012791.1 1057334 1057594 R KEGG: dac:Daci_1505 hypothetical protein; hypothetical protein complement(1057334..1057594) Variovorax paradoxus S110 7970135 YP_002942878.1 CDS Vapar_0961 NC_012791.1 1057591 1058403 R PFAM: cytochrome C assembly protein; KEGG: aav:Aave_0869 cytochrome C assembly protein; cytochrome C assembly protein complement(1057591..1058403) Variovorax paradoxus S110 7970136 YP_002942879.1 CDS Vapar_0962 NC_012791.1 1058502 1059890 D KEGG: aav:Aave_0870 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle protein 1058502..1059890 Variovorax paradoxus S110 7970137 YP_002942880.1 CDS Vapar_0963 NC_012791.1 1059981 1061996 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(1059981..1061996) Variovorax paradoxus S110 7970138 YP_002942881.1 CDS Vapar_0964 NC_012791.1 1062004 1062207 R hypothetical protein complement(1062004..1062207) Variovorax paradoxus S110 7970139 YP_002942882.1 CDS Vapar_0965 NC_012791.1 1062401 1063789 R PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: pol:Bpro_1117 two component, sigma54 specific, transcriptional regulator, fis family; two component sigma-54 specific Fis family transcriptional regulator complement(1062401..1063789) Variovorax paradoxus S110 7970140 YP_002942883.1 CDS Vapar_0966 NC_012791.1 1063824 1064483 R KEGG: aav:Aave_0873 hypothetical protein; hypothetical protein complement(1063824..1064483) Variovorax paradoxus S110 7970141 YP_002942884.1 CDS Vapar_0967 NC_012791.1 1064554 1065981 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_1119 periplasmic sensor signal transduction histidine kinase; histidine kinase complement(1064554..1065981) Variovorax paradoxus S110 7970142 YP_002942885.1 CDS Vapar_0968 NC_012791.1 1065981 1067345 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1065981..1067345) Variovorax paradoxus S110 7970143 YP_002942886.1 CDS Vapar_0969 NC_012791.1 1067440 1067889 R KEGG: pol:Bpro_1121 hypothetical protein; hypothetical protein complement(1067440..1067889) Variovorax paradoxus S110 7970144 YP_002942887.1 CDS Vapar_0970 NC_012791.1 1068160 1069287 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mpt:Mpe_A1334 RND efflux membrane fusion protein precursor; RND family efflux transporter MFP subunit 1068160..1069287 Variovorax paradoxus S110 7970145 YP_002942888.1 CDS Vapar_0971 NC_012791.1 1069284 1072454 D PFAM: acriflavin resistance protein; KEGG: mpt:Mpe_A1335 RND efflux transporter; acriflavin resistance protein 1069284..1072454 Variovorax paradoxus S110 7970146 YP_002942889.1 CDS Vapar_0972 NC_012791.1 1072451 1073098 R PFAM: phosphoglycerate mutase; KEGG: aav:Aave_4233 phosphoglycerate mutase; phosphoglycerate mutase complement(1072451..1073098) Variovorax paradoxus S110 7970147 YP_002942890.1 CDS Vapar_0973 NC_012791.1 1073120 1073740 R KEGG: ajs:Ajs_0493 hypothetical protein; hypothetical protein complement(1073120..1073740) Variovorax paradoxus S110 7970148 YP_002942891.1 CDS Vapar_0974 NC_012791.1 1073787 1074716 R PFAM: PP-loop domain protein; KEGG: pol:Bpro_4089 PP-loop; PP-loop domain-containing protein complement(1073787..1074716) Variovorax paradoxus S110 7970149 YP_002942892.1 CDS Vapar_0975 NC_012791.1 1074774 1075148 R PFAM: dihydroneopterin aldolase; KEGG: rfr:Rfer_0814 dihydroneopterin aldolase; dihydroneopterin aldolase complement(1074774..1075148) Variovorax paradoxus S110 7971210 YP_002942893.1 CDS Vapar_0976 NC_012791.1 1075157 1075945 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0496 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1075157..1075945) Variovorax paradoxus S110 7971947 YP_002942894.1 CDS Vapar_0977 NC_012791.1 1076005 1077087 D PFAM: protein of unknown function DUF185; KEGG: rfr:Rfer_0812 hypothetical protein; hypothetical protein 1076005..1077087 Variovorax paradoxus S110 7971948 YP_002942895.1 CDS Vapar_0978 NC_012791.1 1077147 1078010 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bcj:BCAS0426 taurine dioxygenase; Taurine dioxygenase 1077147..1078010 Variovorax paradoxus S110 7971949 YP_002942896.1 CDS Vapar_0979 NC_012791.1 1078041 1078442 R KEGG: stm:STM2438 hypothetical protein; hypothetical protein complement(1078041..1078442) Variovorax paradoxus S110 7971950 YP_002942897.1 CDS Vapar_0980 NC_012791.1 1078548 1079324 D TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: azo:azo3824 inositol monophosphatase protein; histidinol-phosphate phosphatase 1078548..1079324 Variovorax paradoxus S110 7971951 YP_002942898.1 CDS Vapar_0981 NC_012791.1 1079334 1079528 D KEGG: aav:Aave_4223 hypothetical protein; hypothetical protein 1079334..1079528 Variovorax paradoxus S110 7971952 YP_002942899.1 CDS Vapar_0982 NC_012791.1 1079578 1080504 D PFAM: ROK family protein; KEGG: aav:Aave_4213 glucokinase; ROK family protein 1079578..1080504 Variovorax paradoxus S110 7971953 YP_002942900.1 CDS Vapar_0983 NC_012791.1 1080477 1082030 R PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pna:Pnap_3431 GntR family transcriptional regulator; GntR family transcriptional regulator with aminotransferase domain complement(1080477..1082030) Variovorax paradoxus S110 7971954 YP_002942901.1 CDS Vapar_0984 NC_012791.1 1082204 1082545 D KEGG: pol:Bpro_2662 hypothetical protein; hypothetical protein 1082204..1082545 Variovorax paradoxus S110 7971955 YP_002942902.1 CDS Vapar_0985 NC_012791.1 1082558 1083943 R KEGG: pna:Pnap_0524 alpha,alpha-trehalose-phosphate synthase (UDP-forming); TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase complement(1082558..1083943) Variovorax paradoxus S110 7971956 YP_002942903.1 CDS Vapar_0986 NC_012791.1 1084017 1085939 R PFAM: glycoside hydrolase 15-related; KEGG: pol:Bpro_3916 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein complement(1084017..1085939) Variovorax paradoxus S110 7971957 YP_002942904.1 CDS Vapar_0987 NC_012791.1 1085936 1086712 R KEGG: dac:Daci_5869 HAD family hydrolase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; trehalose-phosphatase complement(1085936..1086712) Variovorax paradoxus S110 7971958 YP_002942905.1 CDS Vapar_0988 NC_012791.1 1086790 1088049 R PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: aav:Aave_4208 metal dependent phosphohydrolase; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(1086790..1088049) Variovorax paradoxus S110 7971959 YP_002942906.1 CDS Vapar_0989 NC_012791.1 1088211 1088936 D PFAM: OmpW family protein; KEGG: har:HEAR0019 outer membrane protein W; OmpW family protein 1088211..1088936 Variovorax paradoxus S110 7971960 YP_002942907.1 CDS Vapar_0990 NC_012791.1 1088958 1089641 R PFAM: glutathione S-transferase domain; KEGG: rfr:Rfer_1089 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(1088958..1089641) Variovorax paradoxus S110 7971961 YP_002942908.1 CDS Vapar_0991 NC_012791.1 1089737 1090306 R PFAM: MgtC/SapB transporter; KEGG: pfo:Pfl01_2532 MgtC/SapB transporter; MgtC/SapB transporter complement(1089737..1090306) Variovorax paradoxus S110 7971962 YP_002942909.1 CDS Vapar_0992 NC_012791.1 1090308 1092338 R PFAM: lytic transglycosylase catalytic; KEGG: ajs:Ajs_0509 lytic transglycosylase, catalytic; lytic transglycosylase complement(1090308..1092338) Variovorax paradoxus S110 7971963 YP_002942910.1 CDS Vapar_0993 NC_012791.1 1092348 1092965 D TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: aav:Aave_4204 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 1092348..1092965 Variovorax paradoxus S110 7971964 YP_002942911.1 CDS Vapar_0994 NC_012791.1 1092972 1093955 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_0664 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1092972..1093955) Variovorax paradoxus S110 7971965 YP_002942912.1 CDS Vapar_0995 NC_012791.1 1094121 1094441 D KEGG: vei:Veis_2647 hypothetical protein; hypothetical protein 1094121..1094441 Variovorax paradoxus S110 7971966 YP_002942913.1 CDS Vapar_0996 NC_012791.1 1094498 1094902 R PFAM: BLUF domain protein; KEGG: pol:Bpro_0667 sensors of blue-light using FAD; BLUF domain-containing protein complement(1094498..1094902) Variovorax paradoxus S110 7971967 YP_002942914.1 CDS Vapar_0997 NC_012791.1 1095071 1095763 D PFAM: cyclic nucleotide-binding; KEGG: pna:Pnap_0532 cyclic nucleotide-binding protein; Crp/Fnr family transcriptional regulator 1095071..1095763 Variovorax paradoxus S110 7971968 YP_002942915.1 CDS Vapar_0998 NC_012791.1 1095783 1096652 R KEGG: pol:Bpro_0670 hypothetical protein; hypothetical protein complement(1095783..1096652) Variovorax paradoxus S110 7971969 YP_002942916.1 CDS Vapar_0999 NC_012791.1 1096669 1098099 D KEGG: pol:Bpro_0671 UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: nucleotidyl transferase; transferase hexapeptide repeat containing protein; UDP-N-acetylglucosamine pyrophosphorylase 1096669..1098099 Variovorax paradoxus S110 7971970 YP_002942917.1 CDS Vapar_1000 NC_012791.1 1098124 1098609 R PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: dia:Dtpsy_0619 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1098124..1098609) Variovorax paradoxus S110 7971971 YP_002942918.1 CDS Vapar_1001 NC_012791.1 1098751 1100631 D TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: dia:Dtpsy_0620 glucosamine/fructose-6-phosphate aminotransferase, isomerizing; glucosamine/fructose-6-phosphate aminotransferase 1098751..1100631 Variovorax paradoxus S110 7971972 YP_002942919.1 CDS Vapar_1002 NC_012791.1 1100747 1102342 D PFAM: filamentation induced by cAMP protein Fic; KEGG: glo:Glov_0277 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic 1100747..1102342 Variovorax paradoxus S110 7971973 YP_002942920.1 CDS Vapar_1003 NC_012791.1 1102399 1103523 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1102399..1103523 Variovorax paradoxus S110 7971974 YP_002942921.1 CDS Vapar_1004 NC_012791.1 1103532 1103888 D KEGG: acp:A2cp1_3395 hypothetical protein; hypothetical protein 1103532..1103888 Variovorax paradoxus S110 7971975 YP_002942922.1 CDS Vapar_1005 NC_012791.1 1103949 1104434 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mch:Mchl_3921 glutathione-dependent formaldehyde-activating GFA; glutathione-dependent formaldehyde-activating protein 1103949..1104434 Variovorax paradoxus S110 7971976 YP_002942923.1 CDS Vapar_1006 NC_012791.1 1104493 1104813 D KEGG: asa:ASA_1250 hypothetical protein; hypothetical protein 1104493..1104813 Variovorax paradoxus S110 7971977 YP_002942924.1 CDS Vapar_1007 NC_012791.1 1104861 1105151 R PFAM: protein of unknown function DUF1330; KEGG: bph:Bphy_4093 hypothetical protein; hypothetical protein complement(1104861..1105151) Variovorax paradoxus S110 7971978 YP_002942925.1 CDS Vapar_1008 NC_012791.1 1105208 1105519 R hypothetical protein complement(1105208..1105519) Variovorax paradoxus S110 7971979 YP_002942926.1 CDS Vapar_1009 NC_012791.1 1105676 1105954 D PFAM: excinuclease ABC C subunit domain protein; KEGG: sml:Smlt4201 hypothetical protein; excinuclease ABC C subunit domain-containing protein 1105676..1105954 Variovorax paradoxus S110 7971980 YP_002942927.1 CDS Vapar_1010 NC_012791.1 1106056 1107297 D PFAM: dehydrogenase E1 component; KEGG: pol:Bpro_0273 branched-chain alpha-keto acid dehydrogenase E1 component; 3-methyl-2-oxobutanoate dehydrogenase 1106056..1107297 Variovorax paradoxus S110 7971981 YP_002942928.1 CDS Vapar_1011 NC_012791.1 1107302 1108315 D PFAM: transketolase; transketolase domain protein; KEGG: pol:Bpro_0274 branched-chain alpha-keto acid dehydrogenase E1 component; transketolase 1107302..1108315 Variovorax paradoxus S110 7971982 YP_002942929.1 CDS Vapar_1012 NC_012791.1 1108316 1109554 D PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: pol:Bpro_0275 branched-chain alpha-keto acid dehydrogenase E2 component; hypothetical protein 1108316..1109554 Variovorax paradoxus S110 7971983 YP_002942930.1 CDS Vapar_1013 NC_012791.1 1109576 1109932 R KEGG: pna:Pnap_2152 hypothetical protein; hypothetical protein complement(1109576..1109932) Variovorax paradoxus S110 7971984 YP_002942931.1 CDS Vapar_1014 NC_012791.1 1109929 1110912 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2767 precorrin-3 methyltransferase / precorrin-6Y C5,15-methyltransferase (decarboxylating); precorrin-3B C17-methyltransferase complement(1109929..1110912) Variovorax paradoxus S110 7971985 YP_002942932.1 CDS Vapar_1015 NC_012791.1 1110909 1111700 R KEGG: pna:Pnap_2154 hypothetical protein; hypothetical protein complement(1110909..1111700) Variovorax paradoxus S110 7971986 YP_002942933.1 CDS Vapar_1016 NC_012791.1 1111715 1111915 R KEGG: pna:Pnap_2155 hypothetical protein; hypothetical protein complement(1111715..1111915) Variovorax paradoxus S110 7971987 YP_002942934.1 CDS Vapar_1017 NC_012791.1 1111953 1112357 R KEGG: pna:Pnap_2156 cobalamin (vitamin B12) biosynthesis CbiG protein; cobalamin (vitamin B12) biosynthesis CbiG protein complement(1111953..1112357) Variovorax paradoxus S110 7971988 YP_002942935.1 CDS Vapar_1018 NC_012791.1 1112354 1113091 R PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pol:Bpro_2773 cobalamin (vitamin B12) biosynthesis CbiG protein; cobalamin (vitamin B12) biosynthesis CbiG protein complement(1112354..1113091) Variovorax paradoxus S110 7971989 YP_002942936.1 CDS Vapar_1019 NC_012791.1 1113081 1113878 R TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2774 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase; precorrin-2 C20-methyltransferase complement(1113081..1113878) Variovorax paradoxus S110 7971990 YP_002942937.1 CDS Vapar_1020 NC_012791.1 1113875 1115185 R KEGG: pol:Bpro_2775 precorrin-6Y C5,15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; protein of unknown function methylase; precorrin-6y C5,15-methyltransferase subunit CbiE complement(1113875..1115185) Variovorax paradoxus S110 7971991 YP_002942938.1 CDS cbiD NC_012791.1 1115182 1116279 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(1115182..1116279) Variovorax paradoxus S110 7971992 YP_002942939.1 CDS Vapar_1022 NC_012791.1 1116276 1116965 R PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: pna:Pnap_2161 precorrin-8X methylmutase CbiC/CobH; Precorrin-8X methylmutase CbiC/CobH complement(1116276..1116965) Variovorax paradoxus S110 7971993 YP_002942940.1 CDS Vapar_1023 NC_012791.1 1116962 1117891 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: pna:Pnap_2162 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein complement(1116962..1117891) Variovorax paradoxus S110 7971994 YP_002942941.1 CDS Vapar_1024 NC_012791.1 1117888 1118733 R KEGG: pol:Bpro_2779 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C11-methyltransferase complement(1117888..1118733) Variovorax paradoxus S110 7971995 YP_002942942.1 CDS Vapar_1025 NC_012791.1 1119316 1119624 R hypothetical protein complement(1119316..1119624) Variovorax paradoxus S110 7971996 YP_002942943.1 CDS Vapar_1026 NC_012791.1 1119721 1120722 R PFAM: conserved hypothetical protein; KEGG: cti:RALTA_B0886 conserved hypothetical protein; UPF0065 domain; exported protein; hypothetical protein complement(1119721..1120722) Variovorax paradoxus S110 7971997 YP_002942944.1 CDS Vapar_1027 NC_012791.1 1120768 1121832 R KEGG: rso:RSp0996 tartrate dehydrogenase oxidoreductase protein; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase complement(1120768..1121832) Variovorax paradoxus S110 7971998 YP_002942945.1 CDS Vapar_1028 NC_012791.1 1121944 1122873 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: lch:Lcho_3175 LysR family transcriptional regulator; LysR family transcriptional regulator 1121944..1122873 Variovorax paradoxus S110 7971999 YP_002942946.1 CDS Vapar_1029 NC_012791.1 1122903 1123232 R PFAM: protein of unknown function DUF326; KEGG: azo:azo1773 hypothetical protein; hypothetical protein complement(1122903..1123232) Variovorax paradoxus S110 7972000 YP_002942947.1 CDS Vapar_1030 NC_012791.1 1123379 1124695 D TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: lch:Lcho_1848 lytic murein transglycosylase; lytic murein transglycosylase 1123379..1124695 Variovorax paradoxus S110 7972001 YP_002942948.1 CDS Vapar_1031 NC_012791.1 1124811 1126070 D PFAM: protein of unknown function DUF1504; KEGG: mpt:Mpe_A0367 hypothetical protein; hypothetical protein 1124811..1126070 Variovorax paradoxus S110 7972002 YP_002942949.1 CDS Vapar_1032 NC_012791.1 1126113 1127786 D hypothetical protein 1126113..1127786 Variovorax paradoxus S110 7972003 YP_002942950.1 CDS Vapar_1033 NC_012791.1 1127833 1128420 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_2085 transcriptional regulator, XRE family; XRE family transcriptional regulator 1127833..1128420 Variovorax paradoxus S110 7972004 YP_002942951.1 CDS Vapar_1034 NC_012791.1 1128422 1128973 D PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2086 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferaser 1128422..1128973 Variovorax paradoxus S110 7972005 YP_002942952.1 CDS Vapar_1035 NC_012791.1 1128943 1129926 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bsu:BSU26620 hypothetical protein; hypothetical protein complement(1128943..1129926) Variovorax paradoxus S110 7972006 YP_002942953.1 CDS Vapar_1036 NC_012791.1 1130065 1130940 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gur:Gura_1198 LysR family transcriptional regulator; LysR family transcriptional regulator 1130065..1130940 Variovorax paradoxus S110 7972007 YP_002942954.1 CDS Vapar_1037 NC_012791.1 1131030 1135784 D PFAM: Mur ligase middle domain protein; KEGG: pde:Pden_2407 Mur ligase, middle domain protein; Mur ligase middle domain-containing protein 1131030..1135784 Variovorax paradoxus S110 7972008 YP_002942955.1 CDS Vapar_1038 NC_012791.1 1135790 1136737 D KEGG: pde:Pden_2409 hypothetical protein; hypothetical protein 1135790..1136737 Variovorax paradoxus S110 7972009 YP_002942956.1 CDS Vapar_1039 NC_012791.1 1136734 1137807 D PFAM: aldose 1-epimerase; KEGG: csa:Csal_0799 aldose 1-epimerase; aldose 1-epimerase 1136734..1137807 Variovorax paradoxus S110 7972010 YP_002942957.1 CDS Vapar_1040 NC_012791.1 1137804 1138742 R PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: aav:Aave_2259 gluconolactonase; SMP-30/gluconolaconase/LRE domain-containing protein complement(1137804..1138742) Variovorax paradoxus S110 7972011 YP_002942958.1 CDS Vapar_1041 NC_012791.1 1138880 1139656 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_2258 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1138880..1139656 Variovorax paradoxus S110 7972012 YP_002942959.1 CDS Vapar_1042 NC_012791.1 1139657 1140616 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_2257 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1139657..1140616) Variovorax paradoxus S110 7972013 YP_002942960.1 CDS Vapar_1043 NC_012791.1 1140773 1142224 D PFAM: aldehyde dehydrogenase; KEGG: aav:Aave_2256 aldehyde dehydrogenase; aldehyde dehydrogenase 1140773..1142224 Variovorax paradoxus S110 7972014 YP_002942961.1 CDS Vapar_1044 NC_012791.1 1142286 1143251 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: aav:Aave_2255 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1142286..1143251 Variovorax paradoxus S110 7972015 YP_002942962.1 CDS Vapar_1045 NC_012791.1 1143384 1144454 D KEGG: aav:Aave_2254 sugar ABC transporter periplasmic sugar-binding protein; sugar ABC transporter periplasmic sugar-binding protein 1143384..1144454 Variovorax paradoxus S110 7972016 YP_002942963.1 CDS Vapar_1046 NC_012791.1 1144463 1146028 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: lch:Lcho_3199 ABC transporter-related protein; ABC transporter 1144463..1146028 Variovorax paradoxus S110 7972017 YP_002942964.1 CDS Vapar_1047 NC_012791.1 1146015 1147229 D PFAM: inner-membrane translocator; KEGG: lch:Lcho_3198 monosaccharide-transporting ATPase; inner-membrane translocator 1146015..1147229 Variovorax paradoxus S110 7972018 YP_002942965.1 CDS Vapar_1048 NC_012791.1 1147238 1148758 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aav:Aave_2251 ABC transporter-related protein; ABC transporter 1147238..1148758 Variovorax paradoxus S110 7972019 YP_002942966.1 CDS Vapar_1049 NC_012791.1 1148904 1149938 D PFAM: inner-membrane translocator; KEGG: aav:Aave_2250 inner-membrane translocator; inner-membrane translocator 1148904..1149938 Variovorax paradoxus S110 7972020 YP_002942967.1 CDS Vapar_1050 NC_012791.1 1149935 1150963 D membrane component of a sugar ABC transporter system; ABC transporter permease 1149935..1150963 Variovorax paradoxus S110 7972021 YP_002942968.1 CDS Vapar_1051 NC_012791.1 1151004 1152755 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 1151004..1152755 Variovorax paradoxus S110 7972022 YP_002942969.1 CDS Vapar_1052 NC_012791.1 1152762 1153679 D PFAM: dihydrodipicolinate synthetase; KEGG: rpi:Rpic_3006 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 1152762..1153679 Variovorax paradoxus S110 7972023 YP_002942970.1 CDS Vapar_1053 NC_012791.1 1153546 1154598 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0176 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1153546..1154598) Variovorax paradoxus S110 7972024 YP_002942971.1 CDS Vapar_1054 NC_012791.1 1154719 1155498 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dia:Dtpsy_0177 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1154719..1155498 Variovorax paradoxus S110 7972025 YP_002942972.1 CDS Vapar_1055 NC_012791.1 1155524 1155778 R KEGG: cvi:CV_3521 hypothetical protein; hypothetical protein complement(1155524..1155778) Variovorax paradoxus S110 7972026 YP_002942973.1 CDS Vapar_1056 NC_012791.1 1155951 1156481 R KEGG: har:HEAR2939 hypothetical protein; hypothetical protein complement(1155951..1156481) Variovorax paradoxus S110 7972027 YP_002942974.1 CDS Vapar_1057 NC_012791.1 1156562 1156984 R KEGG: bpt:Bpet2568 hypothetical protein; hypothetical protein complement(1156562..1156984) Variovorax paradoxus S110 7970557 YP_002942975.1 CDS Vapar_1058 NC_012791.1 1157153 1159720 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(1157153..1159720) Variovorax paradoxus S110 7969580 YP_002942976.1 CDS Vapar_1059 NC_012791.1 1159737 1161983 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(1159737..1161983) Variovorax paradoxus S110 7969581 YP_002942977.1 CDS Vapar_1060 NC_012791.1 1162123 1164405 D PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: pna:Pnap_1007 ABC transporter; ABC transporter 1162123..1164405 Variovorax paradoxus S110 7969582 YP_002942978.1 CDS Vapar_1061 NC_012791.1 1164405 1164881 D PFAM: hypothetical protein; KEGG: pna:Pnap_1008 hypothetical protein; hypothetical protein 1164405..1164881 Variovorax paradoxus S110 7969583 YP_002942979.1 CDS Vapar_1062 NC_012791.1 1164894 1166000 R PFAM: acyltransferase 3; KEGG: gur:Gura_0699 acyltransferase 3; acyltransferase 3 complement(1164894..1166000) Variovorax paradoxus S110 7969584 YP_002942980.1 CDS Vapar_1063 NC_012791.1 1166151 1166864 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: pol:Bpro_0734 ExsB; exsB protein 1166151..1166864 Variovorax paradoxus S110 7969585 YP_002942981.1 CDS Vapar_1064 NC_012791.1 1166871 1168652 R PFAM: ABC transporter domain protein; ABC transporter; SbmABacA family protein; SMART: ATPase AAA; KEGG: rfr:Rfer_0735 ABC transporter-like; ABC transporter complement(1166871..1168652) Variovorax paradoxus S110 7969586 YP_002942982.1 CDS Vapar_1065 NC_012791.1 1168758 1169318 R TIGRFAM: phosphonate degradation operons associated HDIG domain protein; KEGG: rpi:Rpic_3530 metal dependent phosphohydrolase; phosphonate degradation operons associated HDIG domain-containing protein complement(1168758..1169318) Variovorax paradoxus S110 7969587 YP_002942983.1 CDS Vapar_1066 NC_012791.1 1169448 1169582 D hypothetical protein 1169448..1169582 Variovorax paradoxus S110 7969588 YP_002942984.1 CDS Vapar_1067 NC_012791.1 1169688 1170941 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3401 major facilitator superfamily MFS_1; major facilitator superfamily protein 1169688..1170941 Variovorax paradoxus S110 7969589 YP_002942985.1 CDS Vapar_1068 NC_012791.1 1170955 1173159 R KEGG: bmn:BMA10247_A0095 non-hemolytic phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756; phosphocholine-specific phospholipase C complement(1170955..1173159) Variovorax paradoxus S110 7969590 YP_002942986.1 CDS Vapar_1069 NC_012791.1 1173186 1173383 R KEGG: xac:XAC1349 serine protease; hypothetical protein complement(1173186..1173383) Variovorax paradoxus S110 7969591 YP_002942987.1 CDS Vapar_1070 NC_012791.1 1173583 1174482 R PFAM: 5-nucleotidase; KEGG: dac:Daci_5704 5'-nucleotidase; 5'-nucleotidase complement(1173583..1174482) Variovorax paradoxus S110 7969592 YP_002942988.1 CDS Vapar_1071 NC_012791.1 1174507 1175742 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: dia:Dtpsy_0642 general secretion pathway protein F; general secretion pathway protein F complement(1174507..1175742) Variovorax paradoxus S110 7969593 YP_002942989.1 CDS Vapar_1072 NC_012791.1 1175760 1177151 R KEGG: dia:Dtpsy_0645 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: ATPase AAA; general secretory pathway protein E complement(1175760..1177151) Variovorax paradoxus S110 7969594 YP_002942990.1 CDS Vapar_1073 NC_012791.1 1177157 1179481 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ajs:Ajs_0667 general secretion pathway protein D; general secretion pathway protein D complement(1177157..1179481) Variovorax paradoxus S110 7969595 YP_002942991.1 CDS Vapar_1074 NC_012791.1 1179484 1180284 R KEGG: dia:Dtpsy_0647 general secretory pathway N transmembrane protein; general secretory pathway protein N complement(1179484..1180284) Variovorax paradoxus S110 7969596 YP_002942992.1 CDS Vapar_1075 NC_012791.1 1180295 1180813 R KEGG: aav:Aave_0919 hypothetical protein; hypothetical protein complement(1180295..1180813) Variovorax paradoxus S110 7969597 YP_002942993.1 CDS Vapar_1076 NC_012791.1 1180810 1182021 R PFAM: general secretion pathway L; KEGG: pol:Bpro_1326 hypothetical protein; general secretion pathway L complement(1180810..1182021) Variovorax paradoxus S110 7969598 YP_002942994.1 CDS Vapar_1077 NC_012791.1 1182158 1183159 R KEGG: pol:Bpro_1325 general secretion pathway protein K; general secretion pathway protein K complement(1182158..1183159) Variovorax paradoxus S110 7969599 YP_002942995.1 CDS Vapar_1078 NC_012791.1 1183156 1183839 R KEGG: ajs:Ajs_0672 hypothetical protein; hypothetical protein complement(1183156..1183839) Variovorax paradoxus S110 7969600 YP_002942996.1 CDS Vapar_1079 NC_012791.1 1183839 1184213 R TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: pol:Bpro_1323 general secretion pathway protein I; general secretion pathway protein I complement(1183839..1184213) Variovorax paradoxus S110 7969601 YP_002942997.1 CDS Vapar_1080 NC_012791.1 1184210 1184674 R TIGRFAM: general secretion pathway protein H; KEGG: aav:Aave_0924 general secretion pathway protein H; general secretion pathway protein H complement(1184210..1184674) Variovorax paradoxus S110 7969602 YP_002942998.1 CDS Vapar_1081 NC_012791.1 1184649 1185089 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: aav:Aave_0925 general secretion pathway protein G; general secretion pathway protein G complement(1184649..1185089) Variovorax paradoxus S110 7969603 YP_002942999.1 CDS Vapar_1082 NC_012791.1 1185139 1185774 D KEGG: dia:Dtpsy_0655 hypothetical protein; hypothetical protein 1185139..1185774 Variovorax paradoxus S110 7969604 YP_002943000.1 CDS Vapar_1083 NC_012791.1 1185790 1187379 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(1185790..1187379) Variovorax paradoxus S110 7969605 YP_002943001.1 CDS Vapar_1084 NC_012791.1 1187454 1188584 D KEGG: bmj:BMULJ_00432 hypothetical protein; hypothetical protein 1187454..1188584 Variovorax paradoxus S110 7969606 YP_002943002.1 CDS Vapar_1085 NC_012791.1 1188677 1189822 R PFAM: porin Gram-negative type; KEGG: vei:Veis_4644 porin; porin complement(1188677..1189822) Variovorax paradoxus S110 7969607 YP_002943003.1 CDS Vapar_1086 NC_012791.1 1190145 1190594 D PFAM: OsmC family protein; KEGG: dia:Dtpsy_0659 OsmC family protein; OsmC family protein 1190145..1190594 Variovorax paradoxus S110 7969608 YP_002943004.1 CDS Vapar_1087 NC_012791.1 1190607 1191236 R KEGG: pna:Pnap_0646 ubiquinone biosynthesis protein; ubiquinone biosynthesis protein complement(1190607..1191236) Variovorax paradoxus S110 7969609 YP_002943005.1 CDS Vapar_1088 NC_012791.1 1191519 1192763 D KEGG: vei:Veis_4644 porin; porin 1191519..1192763 Variovorax paradoxus S110 7969610 YP_002943006.1 CDS Vapar_1089 NC_012791.1 1192962 1193942 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2112 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1192962..1193942 Variovorax paradoxus S110 7969611 YP_002943007.1 CDS Vapar_1090 NC_012791.1 1193944 1195218 D KEGG: aav:Aave_0935 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1193944..1195218 Variovorax paradoxus S110 7969612 YP_002943008.1 CDS Vapar_1091 NC_012791.1 1195252 1196838 D PFAM: extracellular solute-binding protein family 5; KEGG: pol:Bpro_2113 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 1195252..1196838 Variovorax paradoxus S110 7969613 YP_002943009.1 CDS Vapar_1092 NC_012791.1 1196922 1197833 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2114 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1196922..1197833 Variovorax paradoxus S110 7969614 YP_002943010.1 CDS Vapar_1093 NC_012791.1 1197858 1198928 D KEGG: pol:Bpro_2115 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 1197858..1198928 Variovorax paradoxus S110 7969615 YP_002943011.1 CDS Vapar_1094 NC_012791.1 1198925 1199923 D KEGG: pol:Bpro_2116 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 1198925..1199923 Variovorax paradoxus S110 7969616 YP_002943012.1 CDS Vapar_1095 NC_012791.1 1199980 1200912 D PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: mpt:Mpe_B0122 hypothetical protein; Extradiol ring-cleavage dioxygenase class III protein subunit B 1199980..1200912 Variovorax paradoxus S110 7969617 YP_002943013.1 CDS Vapar_1096 NC_012791.1 1200923 1202389 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(1200923..1202389) Variovorax paradoxus S110 7969618 YP_002943014.1 CDS Vapar_1097 NC_012791.1 1202534 1203547 D PFAM: extracellular solute-binding protein family 1; KEGG: bms:BRA0720 ABC transporter periplasmic substrate-binding protein; family 1 extracellular solute-binding protein 1202534..1203547 Variovorax paradoxus S110 7969619 YP_002943015.1 CDS Vapar_1098 NC_012791.1 1203548 1205824 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_1060 iron ABC transporter permease protein; iron ABC transporter permease 1203548..1205824 Variovorax paradoxus S110 7969620 YP_002943016.1 CDS Vapar_1099 NC_012791.1 1205821 1206870 D PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: rde:RD1_1061 Fe-ABC transporter ATP-binding protein; ABC transporter 1205821..1206870 Variovorax paradoxus S110 7969621 YP_002943017.1 CDS Vapar_1100 NC_012791.1 1206883 1207542 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: rfr:Rfer_1128 HAD family hydrolase; HAD superfamily hydrolase 1206883..1207542 Variovorax paradoxus S110 7969622 YP_002943018.1 CDS Vapar_1101 NC_012791.1 1207529 1208209 R PFAM: lipocalin; KEGG: xac:XAC2561 outer membrane lipoprotein Blc; lipocalin complement(1207529..1208209) Variovorax paradoxus S110 7969623 YP_002943019.1 CDS Vapar_1102 NC_012791.1 1208459 1209415 D KEGG: pna:Pnap_0654 transaldolase B; TIGRFAM: transaldolase; PFAM: transaldolase; transaldolase B 1208459..1209415 Variovorax paradoxus S110 7969624 YP_002943020.1 CDS pgi NC_012791.1 1209418 1210980 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1209418..1210980 Variovorax paradoxus S110 7969625 YP_002943021.1 CDS Vapar_1104 NC_012791.1 1211129 1211458 D PFAM: protein of unknown function DUF805; KEGG: pna:Pnap_0656 hypothetical protein; hypothetical protein 1211129..1211458 Variovorax paradoxus S110 7969626 YP_002943022.1 CDS Vapar_1105 NC_012791.1 1211467 1212531 R PFAM: pyridoxal phosphate biosynthetic protein PdxA; KEGG: pap:PSPA7_3077 4-hydroxythreonine-4-phosphate dehydrogenase; 4-hydroxythreonine-4-phosphate dehydrogenase complement(1211467..1212531) Variovorax paradoxus S110 7969627 YP_002943023.1 CDS Vapar_1106 NC_012791.1 1212569 1213549 R PFAM: conserved hypothetical protein; KEGG: cti:RALTA_B0222 hypothetical protein; hypothetical protein complement(1212569..1213549) Variovorax paradoxus S110 7969628 YP_002943024.1 CDS Vapar_1107 NC_012791.1 1213676 1214575 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_3514 LysR family transcriptional regulator; LysR family transcriptional regulator 1213676..1214575 Variovorax paradoxus S110 7969629 YP_002943025.1 CDS Vapar_1108 NC_012791.1 1214753 1216063 D PFAM: extracellular solute-binding protein family 1; KEGG: lch:Lcho_0138 extracellular solute-binding protein; family 1 extracellular solute-binding protein 1214753..1216063 Variovorax paradoxus S110 7969630 YP_002943026.1 CDS Vapar_1109 NC_012791.1 1216218 1217075 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_5595 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1216218..1217075 Variovorax paradoxus S110 7969631 YP_002943027.1 CDS Vapar_1110 NC_012791.1 1217086 1217910 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_5594 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1217086..1217910 Variovorax paradoxus S110 7969632 YP_002943028.1 CDS Vapar_1111 NC_012791.1 1217928 1218965 D PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: dac:Daci_5593 ABC transporter; ABC transporter 1217928..1218965 Variovorax paradoxus S110 7969633 YP_002943029.1 CDS Vapar_1112 NC_012791.1 1219045 1220439 D PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: lch:Lcho_0134 mannitol dehydrogenase domain-containing protein; Mannitol dehydrogenase domain-containing protein 1219045..1220439 Variovorax paradoxus S110 7969634 YP_002943030.1 CDS Vapar_1113 NC_012791.1 1220436 1221224 D Converts D-sorbitol to L-sorbose; sorbitol dehydrogenase 1220436..1221224 Variovorax paradoxus S110 7969635 YP_002943031.1 CDS Vapar_1114 NC_012791.1 1221573 1222244 D PFAM: transaldolase; KEGG: lch:Lcho_0935 transaldolase; transaldolase 1221573..1222244 Variovorax paradoxus S110 7969636 YP_002943032.1 CDS Vapar_1115 NC_012791.1 1222265 1223233 D PFAM: PfkB domain protein; KEGG: dac:Daci_5591 ribokinase-like domain-containing protein; PfkB domain-containing protein 1222265..1223233 Variovorax paradoxus S110 7969637 YP_002943033.1 CDS Vapar_1116 NC_012791.1 1223208 1224185 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dac:Daci_5590 AraC family transcriptional regulator; AraC family transcriptional regulator 1223208..1224185 Variovorax paradoxus S110 7969638 YP_002943034.1 CDS Vapar_1117 NC_012791.1 1224231 1225706 D TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: lch:Lcho_0132 xylulokinase; xylulokinase 1224231..1225706 Variovorax paradoxus S110 7969639 YP_002943035.1 CDS groEL NC_012791.1 1225781 1227433 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(1225781..1227433) Variovorax paradoxus S110 7969640 YP_002943036.1 CDS Vapar_1119 NC_012791.1 1227464 1227754 R PFAM: chaperonin Cpn10; KEGG: pol:Bpro_0760 chaperonin Cpn10; chaperonin Cpn10 complement(1227464..1227754) Variovorax paradoxus S110 7969641 YP_002943037.1 CDS Vapar_1120 NC_012791.1 1227946 1230051 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_0192 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(1227946..1230051) Variovorax paradoxus S110 7969642 YP_002943038.1 CDS Vapar_1121 NC_012791.1 1230118 1231725 R PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: reh:H16_B2471 cardiolipin synthetase; phospholipase D/transphosphatidylase complement(1230118..1231725) Variovorax paradoxus S110 7969643 YP_002943039.1 CDS Vapar_1122 NC_012791.1 1231907 1234012 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: har:HEAR1368 ferrisiderophore receptor; TonB-dependent siderophore receptor 1231907..1234012 Variovorax paradoxus S110 7969644 YP_002943040.1 CDS Vapar_1123 NC_012791.1 1234043 1235233 D PFAM: PepSY-associated TM helix domain protein; KEGG: dac:Daci_1877 PepSY-associated TM helix domain-containing protein; PepSY-associated TM helix domain-containing protein 1234043..1235233 Variovorax paradoxus S110 7969645 YP_002943041.1 CDS Vapar_1124 NC_012791.1 1235230 1235412 D KEGG: dac:Daci_1876 hypothetical protein; hypothetical protein 1235230..1235412 Variovorax paradoxus S110 7969646 YP_002943042.1 CDS Vapar_1125 NC_012791.1 1235476 1237605 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbr:BB0832 TonB-dependent receptor; TonB-dependent receptor 1235476..1237605 Variovorax paradoxus S110 7969647 YP_002943043.1 CDS Vapar_1126 NC_012791.1 1237635 1238816 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1237635..1238816) Variovorax paradoxus S110 7969648 YP_002943044.1 CDS Vapar_1127 NC_012791.1 1239033 1239929 D PFAM: lipid A biosynthesis acyltransferase; KEGG: aav:Aave_0980 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 1239033..1239929 Variovorax paradoxus S110 7969649 YP_002943045.1 CDS Vapar_1128 NC_012791.1 1239926 1240810 D PFAM: lipid A biosynthesis acyltransferase; KEGG: vei:Veis_4842 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 1239926..1240810 Variovorax paradoxus S110 7969650 YP_002943046.1 CDS Vapar_1129 NC_012791.1 1240821 1241732 R PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_3189 alpha/beta hydrolase; alpha/beta hydrolase fold protein complement(1240821..1241732) Variovorax paradoxus S110 7969651 YP_002943047.1 CDS engB NC_012791.1 1241811 1242554 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1241811..1242554) Variovorax paradoxus S110 7969652 YP_002943048.1 CDS Vapar_1131 NC_012791.1 1242625 1243293 D PFAM: cytochrome C class I; KEGG: pol:Bpro_0772 cytochrome C, class I; cytochrome C class I 1242625..1243293 Variovorax paradoxus S110 7969653 YP_002943049.1 CDS Vapar_1132 NC_012791.1 1243410 1245578 D PFAM: ResB family protein; KEGG: aav:Aave_0985 ResB family protein; ResB family protein 1243410..1245578 Variovorax paradoxus S110 7969654 YP_002943050.1 CDS Vapar_1133 NC_012791.1 1245575 1246891 D TIGRFAM: cytochrome C-type biogenesis protein CcsB; PFAM: cytochrome C assembly protein; KEGG: aav:Aave_0986 cytochrome C assembly protein; cytochrome C-type biogenesis protein CcsB 1245575..1246891 Variovorax paradoxus S110 7969655 YP_002943051.1 CDS Vapar_1134 NC_012791.1 1247007 1248017 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 1247007..1248017 Variovorax paradoxus S110 7969656 YP_002943052.1 CDS Vapar_1135 NC_012791.1 1248046 1248714 D PFAM: ferric reductase domain protein transmembrane component domain; KEGG: pna:Pnap_0668 ferric reductase domain-containing protein; ferric reductase transmembrane domain-containing protein 1248046..1248714 Variovorax paradoxus S110 7969657 YP_002943053.1 CDS Vapar_1136 NC_012791.1 1248745 1250028 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: aav:Aave_0992 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1248745..1250028) Variovorax paradoxus S110 7969658 YP_002943054.1 CDS Vapar_1137 NC_012791.1 1250025 1250246 R KEGG: ajs:Ajs_0717 hypothetical protein; hypothetical protein complement(1250025..1250246) Variovorax paradoxus S110 7969659 YP_002943055.1 CDS Vapar_1138 NC_012791.1 1250310 1250642 D TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: pna:Pnap_0670 frataxin family protein; iron donor protein CyaY 1250310..1250642 Variovorax paradoxus S110 7969660 YP_002943056.1 CDS Vapar_1139 NC_012791.1 1250662 1252986 R TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: aav:Aave_0995 1A family penicillin-binding protein; penicillin-binding protein, 1A family complement(1250662..1252986) Variovorax paradoxus S110 7971127 YP_002943057.1 CDS Vapar_1140 NC_012791.1 1253309 1254388 D TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 1253309..1254388 Variovorax paradoxus S110 7973309 YP_002943058.1 CDS Vapar_1141 NC_012791.1 1254385 1255005 D PFAM: fimbrial assembly family protein; KEGG: pol:Bpro_0782 fimbrial assembly; fimbrial assembly family protein 1254385..1255005 Variovorax paradoxus S110 7973310 YP_002943059.1 CDS Vapar_1142 NC_012791.1 1255013 1255696 D PFAM: pilus assembly protein PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO; pilus assembly protein PilO 1255013..1255696 Variovorax paradoxus S110 7973311 YP_002943060.1 CDS Vapar_1143 NC_012791.1 1255693 1256235 D PFAM: pilus assembly protein PilP; KEGG: rfr:Rfer_2922 pilus assembly protein, PilQ; pilus assembly protein PilP 1255693..1256235 Variovorax paradoxus S110 7973312 YP_002943061.1 CDS Vapar_1144 NC_012791.1 1256232 1258376 D TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; KEGG: rfr:Rfer_2923 type II and III secretion system protein; type IV pilus secretin PilQ 1256232..1258376 Variovorax paradoxus S110 7973313 YP_002943062.1 CDS aroK NC_012791.1 1258400 1258948 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 1258400..1258948 Variovorax paradoxus S110 7973314 YP_002943063.1 CDS aroB NC_012791.1 1258981 1260093 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1258981..1260093 Variovorax paradoxus S110 7973315 YP_002943064.1 CDS Vapar_1147 NC_012791.1 1260116 1261246 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 1260116..1261246 Variovorax paradoxus S110 7973316 YP_002943065.1 CDS Vapar_1148 NC_012791.1 1261309 1262571 D PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_3974 major facilitator transporter; major facilitator superfamily protein 1261309..1262571 Variovorax paradoxus S110 7973317 YP_002943066.1 CDS Vapar_1149 NC_012791.1 1262568 1263143 D PFAM: protein of unknown function DUF1415; KEGG: aav:Aave_1005 hypothetical protein; hypothetical protein 1262568..1263143 Variovorax paradoxus S110 7973318 YP_002943067.1 CDS Vapar_1150 NC_012791.1 1263140 1264024 D KEGG: aav:Aave_1006 hypothetical protein; hypothetical protein 1263140..1264024 Variovorax paradoxus S110 7973319 YP_002943068.1 CDS Vapar_1151 NC_012791.1 1264064 1264759 D PFAM: protein of unknown function DUF1568; KEGG: rfr:Rfer_2932 hypothetical protein; hypothetical protein 1264064..1264759 Variovorax paradoxus S110 7973320 YP_002943069.1 CDS Vapar_1152 NC_012791.1 1264943 1269697 D PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase subunit alpha domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: aav:Aave_1008 glutamate synthase (NADH) large subunit; glutamate synthase (ferredoxin) 1264943..1269697 Variovorax paradoxus S110 7973321 YP_002943070.1 CDS gltD NC_012791.1 1269870 1271348 D glutamate synthase is composed of subunits alpha and beta; subunit beta is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the subunit alpha, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 1269870..1271348 Variovorax paradoxus S110 7973322 YP_002943071.1 CDS Vapar_1154 NC_012791.1 1271414 1272274 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dia:Dtpsy_0716 ABC transporter; ABC transporter 1271414..1272274 Variovorax paradoxus S110 7973323 YP_002943072.1 CDS Vapar_1155 NC_012791.1 1272357 1273139 D PFAM: protein of unknown function DUF140; KEGG: aav:Aave_1014 hypothetical protein; hypothetical protein 1272357..1273139 Variovorax paradoxus S110 7973324 YP_002943073.1 CDS Vapar_1156 NC_012791.1 1273178 1273669 D PFAM: hypothetical protein; KEGG: dac:Daci_5534 hypothetical protein; hypothetical protein 1273178..1273669 Variovorax paradoxus S110 7973325 YP_002943074.1 CDS Vapar_1157 NC_012791.1 1273666 1274412 D PFAM: VacJ family lipoprotein; KEGG: rfr:Rfer_2938 VacJ-like lipoprotein; VacJ family lipoprotein 1273666..1274412 Variovorax paradoxus S110 7973326 YP_002943075.1 CDS Vapar_1158 NC_012791.1 1274596 1275255 D PFAM: toluene tolerance family protein; KEGG: rfr:Rfer_2063 toluene tolerance; toluene tolerance family protein 1274596..1275255 Variovorax paradoxus S110 7973327 YP_002943076.1 CDS Vapar_1159 NC_012791.1 1275260 1275532 D KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS 1275260..1275532 Variovorax paradoxus S110 7973328 YP_002943077.1 CDS Vapar_1160 NC_012791.1 1275620 1276567 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pna:Pnap_0691 ABC transporter; ABC transporter 1275620..1276567 Variovorax paradoxus S110 7973329 YP_002943078.1 CDS Vapar_1161 NC_012791.1 1276650 1277414 D PFAM: ABC transporter; KEGG: aav:Aave_1020 ABC-2 type transporter; ABC transporter 1276650..1277414 Variovorax paradoxus S110 7973330 YP_002943079.1 CDS Vapar_1162 NC_012791.1 1277434 1277676 D PFAM: BolA family protein; KEGG: aav:Aave_1021 BolA family protein; BolA family protein 1277434..1277676 Variovorax paradoxus S110 7973331 YP_002943080.1 CDS Vapar_1163 NC_012791.1 1277714 1279003 D TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: rfr:Rfer_2944 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1277714..1279003 Variovorax paradoxus S110 7973332 YP_002943081.1 CDS hisG NC_012791.1 1279000 1279641 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1279000..1279641 Variovorax paradoxus S110 7973333 YP_002943082.1 CDS hisD NC_012791.1 1279653 1280975 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1279653..1280975 Variovorax paradoxus S110 7973334 YP_002943083.1 CDS Vapar_1166 NC_012791.1 1281008 1281379 D hypothetical protein 1281008..1281379 Variovorax paradoxus S110 7973335 YP_002943084.1 CDS Vapar_1167 NC_012791.1 1281376 1282467 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1281376..1282467 Variovorax paradoxus S110 7973336 YP_002943085.1 CDS Vapar_1168 NC_012791.1 1282464 1283072 D PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: pol:Bpro_0806 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 1282464..1283072 Variovorax paradoxus S110 7973337 YP_002943086.1 CDS Vapar_1169 NC_012791.1 1283092 1283748 D TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dia:Dtpsy_0731 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 1283092..1283748 Variovorax paradoxus S110 7973338 YP_002943087.1 CDS Vapar_1170 NC_012791.1 1283812 1284555 D TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: aav:Aave_1034 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 1283812..1284555 Variovorax paradoxus S110 7973339 YP_002943088.1 CDS Vapar_1171 NC_012791.1 1284586 1285758 D KEGG: bxe:Bxe_A2255 ATPase, RecF-like; ATPase, RecF-like protein 1284586..1285758 Variovorax paradoxus S110 7973340 YP_002943089.1 CDS Vapar_1172 NC_012791.1 1285768 1286688 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bac:BamMC406_5946 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(1285768..1286688) Variovorax paradoxus S110 7973341 YP_002943090.1 CDS Vapar_1173 NC_012791.1 1286697 1288004 R PFAM: sodium:dicarboxylate symporter; KEGG: bcj:BCAS0241 sodium:dicarboxylate symporter family protein; sodium:dicarboxylate symporter complement(1286697..1288004) Variovorax paradoxus S110 7973342 YP_002943091.1 CDS Vapar_1174 NC_012791.1 1288192 1289028 D PFAM: aldose 1-epimerase; KEGG: aav:Aave_1046 aldose 1-epimerase; aldose 1-epimerase 1288192..1289028 Variovorax paradoxus S110 7973343 YP_002943092.1 CDS Vapar_1175 NC_012791.1 1289051 1289830 D TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: aav:Aave_1047 imidazole glycerol phosphate synthase subunit HisF; imidazoleglycerol phosphate synthase, cyclase subunit 1289051..1289830 Variovorax paradoxus S110 7973344 YP_002943093.1 CDS Vapar_1176 NC_012791.1 1289870 1290259 D PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: dac:Daci_5549 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 1289870..1290259 Variovorax paradoxus S110 7973345 YP_002943094.1 CDS Vapar_1177 NC_012791.1 1290256 1290636 D TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: dac:Daci_5550 phosphoribosyl-ATP pyrophosphatase; phosphoribosyl-ATP diphosphatase 1290256..1290636 Variovorax paradoxus S110 7973346 YP_002943095.1 CDS Vapar_1178 NC_012791.1 1290648 1291037 D KEGG: pna:Pnap_0704 transmembrane protein; transmembrane protein 1290648..1291037 Variovorax paradoxus S110 7973347 YP_002943096.1 CDS Vapar_1179 NC_012791.1 1291027 1291386 D PFAM: histidine triad (HIT) protein; KEGG: vei:Veis_0702 histidine triad (HIT) protein; histidine triad (HIT) protein 1291027..1291386 Variovorax paradoxus S110 7973348 YP_002943097.1 CDS tatA NC_012791.1 1291452 1291700 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 1291452..1291700 Variovorax paradoxus S110 7973349 YP_002943098.1 CDS tatB NC_012791.1 1291714 1292172 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pol:Bpro_0815 sec-independent translocase; sec-independent translocase 1291714..1292172 Variovorax paradoxus S110 7973350 YP_002943099.1 CDS Vapar_1182 NC_012791.1 1292251 1293069 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: hypothetical protein; Sec-independent protein translocase subunit TatC 1292251..1293069 Variovorax paradoxus S110 7973351 YP_002943100.1 CDS Vapar_1183 NC_012791.1 1293074 1294234 R KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; HtrA2 peptidase complement(1293074..1294234) Variovorax paradoxus S110 7973352 YP_002943101.1 CDS Vapar_1184 NC_012791.1 1294524 1295867 D PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: aav:Aave_1058 major facilitator superfamily transporter; major facilitator superfamily protein 1294524..1295867 Variovorax paradoxus S110 7973353 YP_002943102.1 CDS Vapar_1185 NC_012791.1 1295864 1296637 D PFAM: protein of unknown function DUF34; KEGG: pol:Bpro_0818 protein of unknown function DUF34; hypothetical protein 1295864..1296637 Variovorax paradoxus S110 7973354 YP_002943103.1 CDS Vapar_1186 NC_012791.1 1296700 1297749 D KEGG: dia:Dtpsy_0750 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 1296700..1297749 Variovorax paradoxus S110 7973355 YP_002943104.1 CDS Vapar_1187 NC_012791.1 1297773 1298204 R TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: dac:Daci_5504 large conductance mechanosensitive channel protein; large conductance mechanosensitive channel protein complement(1297773..1298204) Variovorax paradoxus S110 7973356 YP_002943105.1 CDS Vapar_1188 NC_012791.1 1298316 1299008 D PFAM: phosphoesterase PA-phosphatase related; KEGG: spe:Spro_1575 phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase 1298316..1299008 Variovorax paradoxus S110 7973357 YP_002943106.1 CDS Vapar_1189 NC_012791.1 1299380 1300543 D PFAM: polysaccharide export protein; KEGG: bam:Bamb_6483 polysaccharide export protein; polysaccharide export protein 1299380..1300543 Variovorax paradoxus S110 7973358 YP_002943107.1 CDS Vapar_1190 NC_012791.1 1300540 1300995 D PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: cti:RALTA_A1639 low molecular weight protein-tyrosine-phosphatase (EPS I polysaccharide export protein); protein tyrosine phosphatase 1300540..1300995 Variovorax paradoxus S110 7973359 YP_002943108.1 CDS Vapar_1191 NC_012791.1 1300992 1303244 D KEGG: pna:Pnap_3194 exopolysaccharide transport protein family; TIGRFAM: exopolysaccharide transport protein family; capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; exopolysaccharide transport family protein 1300992..1303244 Variovorax paradoxus S110 7973360 YP_002943109.1 CDS Vapar_1192 NC_012791.1 1303587 1304300 D PFAM: sugar transferase; KEGG: bph:Bphy_1691 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; undecaprenyl-phosphate galactose phosphotransferase 1303587..1304300 Variovorax paradoxus S110 7973361 YP_002943110.1 CDS Vapar_1193 NC_012791.1 1304325 1305488 D KEGG: cti:RALTA_A1636 polysaccharide pyruvyl transferase; polysaccharide pyruvyl transferase 1304325..1305488 Variovorax paradoxus S110 7973362 YP_002943111.1 CDS Vapar_1194 NC_012791.1 1305498 1306565 D PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_B1720 glycosyltransferase CpsG; group 1 glycosyl transferase 1305498..1306565 Variovorax paradoxus S110 7973363 YP_002943112.1 CDS Vapar_1195 NC_012791.1 1306562 1307842 D KEGG: cti:RALTA_A1634 hypothetical protein; hypothetical protein 1306562..1307842 Variovorax paradoxus S110 7973364 YP_002943113.1 CDS Vapar_1196 NC_012791.1 1307859 1309088 D KEGG: cti:RALTA_A1635 polysaccharide efflux transporter; membrane protein; hypothetical protein 1307859..1309088 Variovorax paradoxus S110 7973365 YP_002943114.1 CDS Vapar_1197 NC_012791.1 1309153 1312248 R PFAM: protein of unknown function DUF940 membrane lipoprotein ; protein of unknown function DUF1017; KEGG: bps:BPSS0415 lipoprotein; hypothetical protein complement(1309153..1312248) Variovorax paradoxus S110 7973366 YP_002943115.1 CDS Vapar_1198 NC_012791.1 1312245 1312865 R KEGG: bps:BPSS0416 lipoprotein; lipoprotein complement(1312245..1312865) Variovorax paradoxus S110 7973367 YP_002943116.1 CDS Vapar_1199 NC_012791.1 1313000 1313299 R KEGG: similar to Zinc finger protein ZIC 2 (Zinc finger protein of the cerebellum 2); hypothetical protein complement(1313000..1313299) Variovorax paradoxus S110 7973368 YP_002943117.1 CDS Vapar_1200 NC_012791.1 1313583 1314200 D KEGG: dia:Dtpsy_0752 ubiquinol-cytochrome C reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome C reductase, iron-sulfur subunit 1313583..1314200 Variovorax paradoxus S110 7973369 YP_002943118.1 CDS Vapar_1201 NC_012791.1 1314215 1315651 D PFAM: cytochrome b/b6 domain; KEGG: mpt:Mpe_A0850 cytochrome b; cytochrome b/b6 domain-containing protein 1314215..1315651 Variovorax paradoxus S110 7973370 YP_002943119.1 CDS Vapar_1202 NC_012791.1 1315681 1316454 D PFAM: cytochrome C1; KEGG: aav:Aave_3694 cytochrome C1; cytochrome C1 1315681..1316454 Variovorax paradoxus S110 7973371 YP_002943120.1 CDS Vapar_1203 NC_012791.1 1316550 1317161 D PFAM: glutathione S-transferase domain; KEGG: vei:Veis_3932 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein 1316550..1317161 Variovorax paradoxus S110 7973372 YP_002943121.1 CDS Vapar_1204 NC_012791.1 1317203 1317796 D PFAM: stringent starvation protein B; KEGG: aav:Aave_3692 stringent starvation protein B; stringent starvation protein B 1317203..1317796 Variovorax paradoxus S110 7973373 YP_002943122.1 CDS Vapar_1205 NC_012791.1 1318013 1318411 R KEGG: rme:Rmet_2242 signal peptide protein; signal peptide protein complement(1318013..1318411) Variovorax paradoxus S110 7973375 YP_002943123.1 CDS Vapar_1206 NC_012791.1 1318564 1319352 D PFAM: protein of unknown function DUF1275; KEGG: aav:Aave_0243 hypothetical protein; hypothetical protein 1318564..1319352 Variovorax paradoxus S110 7973376 YP_002943124.1 CDS Vapar_1207 NC_012791.1 1319327 1320340 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbr:BB2846 short chain dehydrogenase; short chain dehydrogenase complement(1319327..1320340) Variovorax paradoxus S110 7973377 YP_002943125.1 CDS Vapar_1208 NC_012791.1 1320465 1322186 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: aav:Aave_3702 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(1320465..1322186) Variovorax paradoxus S110 7973378 YP_002943126.1 CDS Vapar_1209 NC_012791.1 1322183 1323151 R KEGG: rfr:Rfer_3233 hypothetical protein; hypothetical protein complement(1322183..1323151) Variovorax paradoxus S110 7973379 YP_002943127.1 CDS Vapar_1210 NC_012791.1 1323287 1324543 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3232 LolC/E family lipoprotein releasing system, transmembrane protein; lipoprotein releasing system, transmembrane protein, LolC/E family 1323287..1324543 Variovorax paradoxus S110 7973380 YP_002943128.1 CDS Vapar_1211 NC_012791.1 1324536 1325213 D KEGG: pol:Bpro_1015 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; lipoprotein releasing system, ATP-binding protein 1324536..1325213 Variovorax paradoxus S110 7973381 YP_002943129.1 CDS Vapar_1212 NC_012791.1 1325307 1325903 D PFAM: peptidase S14 ClpP; KEGG: bpt:Bpet3891 ATP-dependent Clp protease proteolytic component; endopeptidase Clp 1325307..1325903 Variovorax paradoxus S110 7973382 YP_002943130.1 CDS Vapar_1213 NC_012791.1 1325904 1326293 R TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: pol:Bpro_0655 YjgF-like protein; endoribonuclease L-PSP complement(1325904..1326293) Variovorax paradoxus S110 7973383 YP_002943131.1 CDS Vapar_1214 NC_012791.1 1326478 1328052 D PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_3323 extracellular solute-binding protein; family 5 extracellular solute-binding protein 1326478..1328052 Variovorax paradoxus S110 7973384 YP_002943132.1 CDS Vapar_1215 NC_012791.1 1328082 1329023 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3325 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1328082..1329023 Variovorax paradoxus S110 7973385 YP_002943133.1 CDS Vapar_1216 NC_012791.1 1329034 1329873 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3326 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1329034..1329873 Variovorax paradoxus S110 7973386 YP_002943134.1 CDS Vapar_1217 NC_012791.1 1329873 1330910 D KEGG: vei:Veis_3327 oligopeptide/dipeptide ABC transporter ATPase; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 1329873..1330910 Variovorax paradoxus S110 7973387 YP_002943135.1 CDS Vapar_1218 NC_012791.1 1331056 1332033 D KEGG: vei:Veis_3328 oligopeptide/dipeptide ABC transporter ATPase; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 1331056..1332033 Variovorax paradoxus S110 7973388 YP_002943136.1 CDS Vapar_1219 NC_012791.1 1332030 1333343 D PFAM: alanine racemase domain protein; KEGG: vei:Veis_3329 D-serine deaminase; alanine racemase domain-containing protein 1332030..1333343 Variovorax paradoxus S110 7973389 YP_002943137.1 CDS Vapar_1220 NC_012791.1 1333354 1334265 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: vei:Veis_3330 RpiR family transcriptional regulator; RpiR family transcriptional regulator 1333354..1334265 Variovorax paradoxus S110 7973144 YP_002943138.1 CDS Vapar_1221 NC_012791.1 1334262 1335734 D PFAM: amidohydrolase; D-aminoacylase domain protein; amidohydrolase; KEGG: vei:Veis_3331 N-acyl-D-amino-acid deacylase; N-acyl-D-amino-acid deacylase 1334262..1335734 Variovorax paradoxus S110 7973145 YP_002943139.1 CDS Vapar_1222 NC_012791.1 1336096 1336743 D PFAM: flavin reductase domain protein FMN-binding; KEGG: rme:Rmet_2978 flavin reductase-like, FMN-binding; flavin reductase FMN-binding protein 1336096..1336743 Variovorax paradoxus S110 7973146 YP_002943140.1 CDS Vapar_1223 NC_012791.1 1336771 1337574 R PFAM: hypothetical protein; KEGG: rso:RSc3402 hypothetical protein; hypothetical protein complement(1336771..1337574) Variovorax paradoxus S110 7973147 YP_002943141.1 CDS Vapar_1224 NC_012791.1 1337581 1338141 R KEGG: dar:Daro_1589 hypothetical protein; hypothetical protein complement(1337581..1338141) Variovorax paradoxus S110 7973148 YP_002943142.1 CDS Vapar_1225 NC_012791.1 1338172 1338927 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bja:bll4353 2-deoxy-D-gluconate 3-dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1338172..1338927) Variovorax paradoxus S110 7973149 YP_002943143.1 CDS Vapar_1226 NC_012791.1 1338927 1340987 R catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase complement(1338927..1340987) Variovorax paradoxus S110 7973150 YP_002943144.1 CDS Vapar_1227 NC_012791.1 1341142 1341873 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dac:Daci_0575 ABC transporter; ABC transporter complement(1341142..1341873) Variovorax paradoxus S110 7973151 YP_002943145.1 CDS Vapar_1228 NC_012791.1 1341870 1343765 R PFAM: ABC transporter; inner-membrane translocator; SMART: ATPase AAA; KEGG: dac:Daci_0574 ABC transporter; ABC transporter complement(1341870..1343765) Variovorax paradoxus S110 7973152 YP_002943146.1 CDS Vapar_1229 NC_012791.1 1343762 1344790 R PFAM: inner-membrane translocator; KEGG: dac:Daci_0573 inner-membrane translocator; inner-membrane translocator complement(1343762..1344790) Variovorax paradoxus S110 7973153 YP_002943147.1 CDS Vapar_1230 NC_012791.1 1344888 1346036 R PFAM: extracellular ligand-binding receptor; KEGG: lch:Lcho_2401 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1344888..1346036) Variovorax paradoxus S110 7973154 YP_002943148.1 CDS Vapar_1231 NC_012791.1 1346074 1347168 R TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: dac:Daci_0814 phenylacetate-CoA oxygenase/reductase, PaaK subunit; phenylacetate-CoA oxygenase/reductase subunit PaaK complement(1346074..1347168) Variovorax paradoxus S110 7973155 YP_002943149.1 CDS Vapar_1232 NC_012791.1 1347172 1347702 R TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: mpt:Mpe_A0990 ring oxidation complex protein 3; phenylacetate-CoA oxygenase subunit PaaJ complement(1347172..1347702) Variovorax paradoxus S110 7973156 YP_002943150.1 CDS Vapar_1233 NC_012791.1 1347699 1348478 R TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: vei:Veis_3947 phenylacetate-CoA oxygenase, PaaI subunit; phenylacetate-CoA oxygenase subunit PaaI complement(1347699..1348478) Variovorax paradoxus S110 7973157 YP_002943151.1 CDS paaB NC_012791.1 1348487 1348783 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB complement(1348487..1348783) Variovorax paradoxus S110 7973158 YP_002943152.1 CDS paaA NC_012791.1 1348780 1349793 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA complement(1348780..1349793) Variovorax paradoxus S110 7973159 YP_002943153.1 CDS Vapar_1236 NC_012791.1 1349835 1351145 R KEGG: dac:Daci_0809 phenylacetate-CoA ligase; TIGRFAM: phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; phenylacetate-CoA ligase complement(1349835..1351145) Variovorax paradoxus S110 7973160 YP_002943154.1 CDS Vapar_1237 NC_012791.1 1351160 1351603 R TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: mpt:Mpe_A0985 phenylacetic acid degradation protein; phenylacetic acid degradation protein PaaD complement(1351160..1351603) Variovorax paradoxus S110 7973161 YP_002943155.1 CDS Vapar_1238 NC_012791.1 1351967 1352770 R PFAM: enoyl-CoA hydratase/isomerase; KEGG: mpt:Mpe_A0984 short chain enoyl-CoA hydratase / enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(1351967..1352770) Variovorax paradoxus S110 7973162 YP_002943156.1 CDS Vapar_1239 NC_012791.1 1352898 1353500 D KEGG: lch:Lcho_2406 phenylacetic acid degradation protein PaaY; phenylacetic acid degradation protein PaaY 1352898..1353500 Variovorax paradoxus S110 7973163 YP_002943157.1 CDS Vapar_1240 NC_012791.1 1353565 1354200 D PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A0992 transcriptional regulator of paa operon; TetR family transcriptional regulator 1353565..1354200 Variovorax paradoxus S110 7973164 YP_002943158.1 CDS Vapar_1241 NC_012791.1 1354184 1355221 R PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: pol:Bpro_3893 von Willebrand factor, type A; von Willebrand factor type A complement(1354184..1355221) Variovorax paradoxus S110 7973165 YP_002943159.1 CDS Vapar_1242 NC_012791.1 1355218 1356207 R PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3892 protein of unknown function DUF58; hypothetical protein complement(1355218..1356207) Variovorax paradoxus S110 7973166 YP_002943160.1 CDS Vapar_1243 NC_012791.1 1356316 1357329 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pol:Bpro_3891 ATPase associated with various cellular activities, AAA_3; Sigma 54 interacting domain-containing protein complement(1356316..1357329) Variovorax paradoxus S110 7973167 YP_002943161.1 CDS Vapar_1244 NC_012791.1 1357380 1358372 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: pna:Pnap_3244 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap complement(1357380..1358372) Variovorax paradoxus S110 7973168 YP_002943162.1 CDS Vapar_1245 NC_012791.1 1358464 1359324 D PFAM: TatD-related deoxyribonuclease; KEGG: pol:Bpro_3885 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 1358464..1359324 Variovorax paradoxus S110 7973169 YP_002943163.1 CDS Vapar_1246 NC_012791.1 1359455 1359871 D KEGG: hypothetical protein; hypothetical protein 1359455..1359871 Variovorax paradoxus S110 7973170 YP_002943164.1 CDS Vapar_1247 NC_012791.1 1359949 1360476 D KEGG: pna:Pnap_3242 hypothetical protein; hypothetical protein 1359949..1360476 Variovorax paradoxus S110 7973171 YP_002943165.1 CDS Vapar_1248 NC_012791.1 1360476 1361258 D KEGG: aav:Aave_1067 hypothetical protein; hypothetical protein 1360476..1361258 Variovorax paradoxus S110 7973172 YP_002943166.1 CDS Vapar_1249 NC_012791.1 1361255 1363042 D PFAM: type II secretion system protein E; general secretory system II protein E domain protein; SMART: ATPase AAA; KEGG: rfr:Rfer_3214 type II secretion system protein E; type II secretion system protein E 1361255..1363042 Variovorax paradoxus S110 7973173 YP_002943167.1 CDS Vapar_1250 NC_012791.1 1363159 1363647 D PFAM: protein of unknown function DUF1468; KEGG: dia:Dtpsy_2746 protein of unknown function DUF1468; hypothetical protein 1363159..1363647 Variovorax paradoxus S110 7973174 YP_002943168.1 CDS Vapar_1251 NC_012791.1 1363663 1365174 D PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein; hypothetical protein 1363663..1365174 Variovorax paradoxus S110 7973175 YP_002943169.1 CDS Vapar_1252 NC_012791.1 1365312 1366238 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbr:BB3137 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1365312..1366238) Variovorax paradoxus S110 7973176 YP_002943170.1 CDS Vapar_1253 NC_012791.1 1366336 1367310 D PFAM: conserved hypothetical protein; KEGG: reh:H16_A2779 probable extra-cytoplasmic solute receptor; hypothetical protein 1366336..1367310 Variovorax paradoxus S110 7973177 YP_002943171.1 CDS Vapar_1254 NC_012791.1 1367325 1368938 D PFAM: gamma-glutamyltranspeptidase; KEGG: pol:Bpro_3878 Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03; Gamma-glutamyltransferase 1367325..1368938 Variovorax paradoxus S110 7973178 YP_002943172.1 CDS Vapar_1255 NC_012791.1 1368960 1369910 D PFAM: protein of unknown function DUF6 transmembrane; protein of unknown function DUF250; KEGG: pna:Pnap_3236 hypothetical protein; hypothetical protein 1368960..1369910 Variovorax paradoxus S110 7973179 YP_002943173.1 CDS Vapar_1256 NC_012791.1 1369937 1370731 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3876 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1369937..1370731 Variovorax paradoxus S110 7973180 YP_002943174.1 CDS Vapar_1257 NC_012791.1 1370771 1371679 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: aav:Aave_3469 hypothetical protein; hypothetical protein complement(1370771..1371679) Variovorax paradoxus S110 7973181 YP_002943175.1 CDS Vapar_1258 NC_012791.1 1371778 1372764 D PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: dia:Dtpsy_2740 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase zinc-binding domain-containing protein 1371778..1372764 Variovorax paradoxus S110 7973182 YP_002943176.1 CDS Vapar_1259 NC_012791.1 1372865 1373275 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like); response regulator receiver protein 1372865..1373275 Variovorax paradoxus S110 7973183 YP_002943177.1 CDS Vapar_1260 NC_012791.1 1373292 1374953 R TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: aav:Aave_3461 Na/Pi-cotransporter II-related protein; Na/Pi-cotransporter II-like protein complement(1373292..1374953) Variovorax paradoxus S110 7973184 YP_002943178.1 CDS Vapar_1261 NC_012791.1 1375018 1375878 R PFAM: metallophosphoesterase; KEGG: aav:Aave_3458 metallophosphoesterase; metallophosphoesterase complement(1375018..1375878) Variovorax paradoxus S110 7973185 YP_002943179.1 CDS Vapar_1262 NC_012791.1 1375875 1376936 R PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: aav:Aave_3457 ABC transporter-related protein; ABC transporter complement(1375875..1376936) Variovorax paradoxus S110 7973186 YP_002943180.1 CDS Vapar_1263 NC_012791.1 1376926 1377726 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3456 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(1376926..1377726) Variovorax paradoxus S110 7973187 YP_002943181.1 CDS Vapar_1264 NC_012791.1 1377746 1378567 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_3123 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(1377746..1378567) Variovorax paradoxus S110 7973188 YP_002943182.1 CDS Vapar_1265 NC_012791.1 1378873 1379886 R PFAM: extracellular solute-binding protein family 1; KEGG: aav:Aave_3454 periplasmic solute-binding protein; family 1 extracellular solute-binding protein complement(1378873..1379886) Variovorax paradoxus S110 7973189 YP_002943183.1 CDS Vapar_1266 NC_012791.1 1379935 1380945 R PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: aav:Aave_3453 LacI family transcription regulator; LacI family transcriptional regulator complement(1379935..1380945) Variovorax paradoxus S110 7973190 YP_002943184.1 CDS Vapar_1267 NC_012791.1 1381155 1381667 R KEGG: pol:Bpro_3850 Signal peptidase II. Aspartic peptidase. MEROPS family A08; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase complement(1381155..1381667) Variovorax paradoxus S110 7973191 YP_002943185.1 CDS Vapar_1268 NC_012791.1 1381667 1384516 R TIGRFAM: isoleucyl-tRNA synthetase; KEGG: dia:Dtpsy_2735 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(1381667..1384516) Variovorax paradoxus S110 7973192 YP_002943186.1 CDS Vapar_1269 NC_012791.1 1384639 1385676 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(1384639..1385676) Variovorax paradoxus S110 7973193 YP_002943187.1 CDS Vapar_1270 NC_012791.1 1385843 1386403 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_3847 HNH endonuclease; HNH endonuclease 1385843..1386403 Variovorax paradoxus S110 7973194 YP_002943188.1 CDS Vapar_1271 NC_012791.1 1386404 1387192 R PFAM: enoyl-CoA hydratase/isomerase; KEGG: lch:Lcho_2075 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1386404..1387192) Variovorax paradoxus S110 7973195 YP_002943189.1 CDS Vapar_1272 NC_012791.1 1387217 1388569 R KEGG: bja:bll0558 hypothetical protein; hypothetical protein complement(1387217..1388569) Variovorax paradoxus S110 7973196 YP_002943190.1 CDS Vapar_1273 NC_012791.1 1388655 1389770 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3846 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(1388655..1389770) Variovorax paradoxus S110 7973197 YP_002943191.1 CDS Vapar_1274 NC_012791.1 1389783 1390964 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: aav:Aave_3439 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein complement(1389783..1390964) Variovorax paradoxus S110 7973198 YP_002943192.1 CDS purN NC_012791.1 1391109 1391705 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1391109..1391705 Variovorax paradoxus S110 7973199 YP_002943193.1 CDS Vapar_1276 NC_012791.1 1391740 1392060 D KEGG: xcc:XCC0033 hypothetical protein; hypothetical protein 1391740..1392060 Variovorax paradoxus S110 7973200 YP_002943194.1 CDS Vapar_1277 NC_012791.1 1392106 1392342 R PFAM: protein of unknown function DUF1653; KEGG: dia:Dtpsy_2727 protein of unknown function DUF1653; hypothetical protein complement(1392106..1392342) Variovorax paradoxus S110 7973201 YP_002943195.1 CDS Vapar_1278 NC_012791.1 1392387 1394240 D PFAM: peptidase M48 Ste24p; KEGG: pol:Bpro_3806 peptidase M48, Ste24p; peptidase M48 Ste24p 1392387..1394240 Variovorax paradoxus S110 7973202 YP_002943196.1 CDS Vapar_1279 NC_012791.1 1394269 1395540 D PFAM: Fmu (Sun) domain protein; KEGG: aav:Aave_3433 Fmu (Sun) domain-containing protein; Fmu (Sun) domain-containing protein 1394269..1395540 Variovorax paradoxus S110 7973203 YP_002943197.1 CDS Vapar_1280 NC_012791.1 1395674 1396888 D PFAM: fatty acid desaturase; KEGG: pol:Bpro_3804 fatty acid desaturase; fatty acid desaturase 1395674..1396888 Variovorax paradoxus S110 7973204 YP_002943198.1 CDS Vapar_1281 NC_012791.1 1397043 1397216 R TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: dac:Daci_5366 ribosomal protein L33; 50S ribosomal protein L33 complement(1397043..1397216) Variovorax paradoxus S110 7973205 YP_002943199.1 CDS rpmB NC_012791.1 1397228 1397461 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(1397228..1397461) Variovorax paradoxus S110 7973206 YP_002943200.1 CDS Vapar_1283 NC_012791.1 1397640 1398599 R TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mpt:Mpe_A1118 thioredoxin reductase; thioredoxin reductase complement(1397640..1398599) Variovorax paradoxus S110 7973207 YP_002943201.1 CDS Vapar_1284 NC_012791.1 1398781 1399455 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pol:Bpro_3800 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 1398781..1399455 Variovorax paradoxus S110 7973208 YP_002943202.1 CDS Vapar_1285 NC_012791.1 1399550 1401949 D PFAM: cell divisionFtsK/SpoIIIE; KEGG: aav:Aave_3426 DNA translocase FtsK; cell division protein FtsK/SpoIIIE 1399550..1401949 Variovorax paradoxus S110 7973209 YP_002943203.1 CDS Vapar_1286 NC_012791.1 1402104 1402736 D TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dia:Dtpsy_2719 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 1402104..1402736 Variovorax paradoxus S110 7973210 YP_002943204.1 CDS Vapar_1287 NC_012791.1 1402757 1404049 D PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: vei:Veis_1761 recombination factor protein RarA; recombination factor protein RarA 1402757..1404049 Variovorax paradoxus S110 7973211 YP_002943205.1 CDS Vapar_1288 NC_012791.1 1404289 1405218 D PFAM: inner-membrane translocator; KEGG: aav:Aave_1875 inner-membrane translocator; inner-membrane translocator 1404289..1405218 Variovorax paradoxus S110 7973212 YP_002943206.1 CDS Vapar_1289 NC_012791.1 1405232 1406431 D PFAM: inner-membrane translocator; KEGG: aav:Aave_1876 inner-membrane translocator; inner-membrane translocator 1405232..1406431 Variovorax paradoxus S110 7973213 YP_002943207.1 CDS Vapar_1290 NC_012791.1 1406451 1407224 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dia:Dtpsy_2710 ABC transporter; ABC transporter 1406451..1407224 Variovorax paradoxus S110 7973214 YP_002943208.1 CDS Vapar_1291 NC_012791.1 1407241 1408035 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_3793 ABC transporter; ABC transporter 1407241..1408035 Variovorax paradoxus S110 7973215 YP_002943209.1 CDS Vapar_1292 NC_012791.1 1408046 1409023 R PFAM: conserved hypothetical protein; KEGG: rfr:Rfer_3300 hypothetical protein; hypothetical protein complement(1408046..1409023) Variovorax paradoxus S110 7973216 YP_002943210.1 CDS Vapar_1293 NC_012791.1 1409061 1410125 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(1409061..1410125) Variovorax paradoxus S110 7973217 YP_002943211.1 CDS Vapar_1294 NC_012791.1 1410181 1411122 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: aav:Aave_1978 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1410181..1411122 Variovorax paradoxus S110 7973218 YP_002943212.1 CDS Vapar_1295 NC_012791.1 1411127 1411753 D KEGG: met:M446_1288 hypothetical protein; hypothetical protein 1411127..1411753 Variovorax paradoxus S110 7973219 YP_002943213.1 CDS Vapar_1296 NC_012791.1 1411908 1412810 D TIGRFAM: cysteine synthase B; cysteine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: pol:Bpro_3726 cysteine synthase B; cysteine synthase B 1411908..1412810 Variovorax paradoxus S110 7973221 YP_002943214.1 CDS Vapar_1297 NC_012791.1 1412819 1413397 D PFAM: NUDIX hydrolase; KEGG: vei:Veis_1027 NUDIX hydrolase; NUDIX hydrolase 1412819..1413397 Variovorax paradoxus S110 7973222 YP_002943215.1 CDS Vapar_1298 NC_012791.1 1413387 1413614 D PFAM: SirA family protein; KEGG: dia:Dtpsy_2384 SirA family protein; SirA family protein 1413387..1413614 Variovorax paradoxus S110 7973223 YP_002943216.1 CDS Vapar_1299 NC_012791.1 1413656 1414546 R TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: aav:Aave_1991 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase complement(1413656..1414546) Variovorax paradoxus S110 7973224 YP_002943217.1 CDS Vapar_1300 NC_012791.1 1414655 1417534 R TIGRFAM: valyl-tRNA synthetase; KEGG: rfr:Rfer_2376 valyl-tRNA synthetase; valyl-tRNA synthetase complement(1414655..1417534) Variovorax paradoxus S110 7972818 YP_002943218.1 CDS Vapar_1301 NC_012791.1 1417642 1418427 D PFAM: protein of unknown function DUF328; KEGG: aav:Aave_1172 hypothetical protein; hypothetical protein 1417642..1418427 Variovorax paradoxus S110 7972982 YP_002943219.1 CDS Vapar_1302 NC_012791.1 1418584 1419423 D KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase subunit alpha; Procollagen-proline dioxygenase 1418584..1419423 Variovorax paradoxus S110 7972983 YP_002943220.1 CDS Vapar_1303 NC_012791.1 1419441 1420340 D PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3711 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1419441..1420340 Variovorax paradoxus S110 7972984 YP_002943221.1 CDS queF NC_012791.1 1420337 1421215 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1420337..1421215 Variovorax paradoxus S110 7972985 YP_002943222.1 CDS Vapar_1305 NC_012791.1 1421334 1422239 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: vei:Veis_2388 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1421334..1422239 Variovorax paradoxus S110 7972986 YP_002943223.1 CDS Vapar_1306 NC_012791.1 1422336 1423226 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_2389 LysR family transcriptional regulator; LysR family transcriptional regulator 1422336..1423226 Variovorax paradoxus S110 7972987 YP_002943224.1 CDS Vapar_1307 NC_012791.1 1423246 1424133 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bov:BOV_A0146 LysR family transcriptional regulator; LysR family transcriptional regulator 1423246..1424133 Variovorax paradoxus S110 7972988 YP_002943225.1 CDS Vapar_1308 NC_012791.1 1424242 1425396 D PFAM: mandelate racemase/muconate lactonizing protein; KEGG: mes:Meso_3046 mandelate racemase/muconate lactonizing enzyme-like; mandelate racemase/muconate lactonizing protein 1424242..1425396 Variovorax paradoxus S110 7972989 YP_002943226.1 CDS Vapar_1309 NC_012791.1 1425426 1426430 D PFAM: conserved hypothetical protein; KEGG: bpt:Bpet2909 secreted protein; hypothetical protein 1425426..1426430 Variovorax paradoxus S110 7972990 YP_002943227.1 CDS Vapar_1310 NC_012791.1 1426431 1427138 D PFAM: Asp/Glu/hydantoin racemase; KEGG: mes:Meso_3050 Asp/Glu racemase; Arylmalonate decarboxylase 1426431..1427138 Variovorax paradoxus S110 7972991 YP_002943228.1 CDS Vapar_1311 NC_012791.1 1427144 1428508 R PFAM: MmgE/PrpD family protein; KEGG: ajs:Ajs_0116 MmgE/PrpD family protein; MmgE/PrpD family protein complement(1427144..1428508) Variovorax paradoxus S110 7972992 YP_002943229.1 CDS Vapar_1312 NC_012791.1 1428518 1429681 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: xau:Xaut_1346 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein complement(1428518..1429681) Variovorax paradoxus S110 7972993 YP_002943230.1 CDS Vapar_1313 NC_012791.1 1429687 1430475 R KEGG: vei:Veis_2009 citrate synthase; citrate synthase complement(1429687..1430475) Variovorax paradoxus S110 7972994 YP_002943231.1 CDS Vapar_1314 NC_012791.1 1430582 1432909 D PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_2008 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein 1430582..1432909 Variovorax paradoxus S110 7972995 YP_002943232.1 CDS Vapar_1315 NC_012791.1 1432953 1433939 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_2006 hypothetical protein; hypothetical protein 1432953..1433939 Variovorax paradoxus S110 7972996 YP_002943233.1 CDS Vapar_1316 NC_012791.1 1433936 1435450 D PFAM: AMP-dependent synthetase and ligase; KEGG: bur:Bcep18194_C7294 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1433936..1435450 Variovorax paradoxus S110 7972997 YP_002943234.1 CDS Vapar_1317 NC_012791.1 1435447 1435863 R PFAM: protein of unknown function DUF1486; KEGG: ccs:CCNA_02228 NTF2 enzyme family protein; hypothetical protein complement(1435447..1435863) Variovorax paradoxus S110 7972998 YP_002943235.1 CDS Vapar_1318 NC_012791.1 1436007 1436186 D KEGG: bpt:Bpet3484 hypothetical protein; hypothetical protein 1436007..1436186 Variovorax paradoxus S110 7972999 YP_002943236.1 CDS Vapar_1319 NC_012791.1 1436371 1437048 D KEGG: dia:Dtpsy_0812 hypothetical protein; hypothetical protein 1436371..1437048 Variovorax paradoxus S110 7973000 YP_002943237.1 CDS Vapar_1320 NC_012791.1 1436994 1438241 R KEGG: aav:Aave_1492 DNA topoisomerase, type I; DNA topoisomerase, type I complement(1436994..1438241) Variovorax paradoxus S110 7973001 YP_002943238.1 CDS Vapar_1321 NC_012791.1 1438364 1439434 D PFAM: purine nucleoside permease; KEGG: oan:Oant_0564 purine nucleoside permease; purine nucleoside permease 1438364..1439434 Variovorax paradoxus S110 7973002 YP_002943239.1 CDS Vapar_1322 NC_012791.1 1439441 1440121 R KEGG: abu:Abu_1617 hypothetical protein; hypothetical protein complement(1439441..1440121) Variovorax paradoxus S110 7973003 YP_002943240.1 CDS Vapar_1323 NC_012791.1 1440135 1441385 R PFAM: UMUC domain protein DNA-repair protein; KEGG: pol:Bpro_3696 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(1440135..1441385) Variovorax paradoxus S110 7973004 YP_002943241.1 CDS Vapar_1324 NC_012791.1 1441494 1442333 D KEGG: ypi:YpsIP31758_4012 hypothetical protein; hypothetical protein 1441494..1442333 Variovorax paradoxus S110 7973005 YP_002943242.1 CDS Vapar_1325 NC_012791.1 1442355 1442975 R KEGG: sde:Sde_1837 hypothetical protein; hypothetical protein complement(1442355..1442975) Variovorax paradoxus S110 7973006 YP_002943243.1 CDS Vapar_1326 NC_012791.1 1443062 1444546 R PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: azc:AZC_4023 TRAP-type mannitol/chloroaromatic compound transport permease; TRAP dicarboxylate transporter subunit DctM complement(1443062..1444546) Variovorax paradoxus S110 7973007 YP_002943244.1 CDS Vapar_1327 NC_012791.1 1444557 1445081 R KEGG: azc:AZC_4022 hypothetical protein; hypothetical protein complement(1444557..1445081) Variovorax paradoxus S110 7973008 YP_002943245.1 CDS Vapar_1328 NC_012791.1 1445177 1445740 D PFAM: protein of unknown function DUF1089; KEGG: rsh:Rsph17029_3663 hypothetical protein; hypothetical protein 1445177..1445740 Variovorax paradoxus S110 7973009 YP_002943246.1 CDS Vapar_1329 NC_012791.1 1445740 1447110 D KEGG: dac:Daci_1894 hypothetical protein; hypothetical protein 1445740..1447110 Variovorax paradoxus S110 7973010 YP_002943247.1 CDS Vapar_1330 NC_012791.1 1447139 1448476 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: aav:Aave_1559 major facilitator superfamily metabolite/H(+) symporter; metabolite/H+ symporter, major facilitator superfamily (MFS) complement(1447139..1448476) Variovorax paradoxus S110 7973011 YP_002943248.1 CDS Vapar_1331 NC_012791.1 1448583 1449740 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: vei:Veis_3178 L-lactate dehydrogenase (cytochrome); L-lactate dehydrogenase (cytochrome) complement(1448583..1449740) Variovorax paradoxus S110 7973012 YP_002943249.1 CDS Vapar_1332 NC_012791.1 1449879 1450763 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bmj:BMULJ_05725 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1449879..1450763) Variovorax paradoxus S110 7973013 YP_002943250.1 CDS Vapar_1333 NC_012791.1 1450786 1451376 R PFAM: regulatory protein TetR; KEGG: pol:Bpro_2654 TetR family transcriptional regulator; TetR family transcriptional regulator complement(1450786..1451376) Variovorax paradoxus S110 7973014 YP_002943251.1 CDS Vapar_1334 NC_012791.1 1451462 1451887 D PFAM: protein of unknown function DUF1348; KEGG: met:M446_5027 hypothetical protein; hypothetical protein 1451462..1451887 Variovorax paradoxus S110 7973015 YP_002943252.1 CDS Vapar_1335 NC_012791.1 1451966 1452409 D catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 1451966..1452409 Variovorax paradoxus S110 7973016 YP_002943253.1 CDS Vapar_1336 NC_012791.1 1452431 1453183 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; KEGG: ppw:PputW619_2737 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1452431..1453183) Variovorax paradoxus S110 7973017 YP_002943254.1 CDS Vapar_1337 NC_012791.1 1453272 1454735 R PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bur:Bcep18194_A4479 GntR family transcriptional regulator; GntR family transcriptional regulator with aminotransferase domain complement(1453272..1454735) Variovorax paradoxus S110 7973018 YP_002943255.1 CDS Vapar_1338 NC_012791.1 1454870 1456003 D PFAM: aminotransferase class I and II; aminotransferase class V; KEGG: bra:BRADO3524 aminotransferase; class I and II aminotransferase 1454870..1456003 Variovorax paradoxus S110 7973019 YP_002943256.1 CDS Vapar_1339 NC_012791.1 1456010 1456600 R PFAM: NADPH-dependent FMN reductase; KEGG: rpe:RPE_2416 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(1456010..1456600) Variovorax paradoxus S110 7973020 YP_002943257.1 CDS Vapar_1340 NC_012791.1 1456723 1457520 D KEGG: bvi:Bcep1808_1615 hypothetical protein; hypothetical protein 1456723..1457520 Variovorax paradoxus S110 7973021 YP_002943258.1 CDS Vapar_1341 NC_012791.1 1457548 1458828 R PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0000376 probable cyanate transporter protein; major facilitator superfamily protein complement(1457548..1458828) Variovorax paradoxus S110 7973022 YP_002943259.1 CDS Vapar_1342 NC_012791.1 1458825 1459514 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_CH0000377 probable transcriptional regulator protein, GntR family; GntR family transcriptional regulator complement(1458825..1459514) Variovorax paradoxus S110 7973023 YP_002943260.1 CDS Vapar_1343 NC_012791.1 1459616 1461859 R TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; Penicillin-binding domain protein; penicillin-binding protein transpeptidase; KEGG: pna:Pnap_3142 penicillin-binding protein 1C; penicillin-binding protein 1C complement(1459616..1461859) Variovorax paradoxus S110 7973024 YP_002943261.1 CDS Vapar_1344 NC_012791.1 1462124 1462336 D KEGG: pna:Pnap_3972 hypothetical protein; hypothetical protein 1462124..1462336 Variovorax paradoxus S110 7973025 YP_002943262.1 CDS Vapar_1345 NC_012791.1 1462355 1462981 R PFAM: lysine exporter (LYSE/YGGA); KEGG: ara:Arad_4739 amino acid efflux protein; lysine exporter LysE/YggA complement(1462355..1462981) Variovorax paradoxus S110 7973026 YP_002943263.1 CDS Vapar_1346 NC_012791.1 1463010 1463279 R KEGG: bbt:BBta_6235 hypothetical protein; hypothetical protein complement(1463010..1463279) Variovorax paradoxus S110 7973027 YP_002943264.1 CDS Vapar_1347 NC_012791.1 1463311 1463811 R PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002805 acetyltransferase protein; GCN5-like N-acetyltransferaser complement(1463311..1463811) Variovorax paradoxus S110 7973028 YP_002943265.1 CDS Vapar_1348 NC_012791.1 1463808 1464233 R PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_3143 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferaser complement(1463808..1464233) Variovorax paradoxus S110 7973029 YP_002943266.1 CDS Vapar_1349 NC_012791.1 1464267 1465337 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(1464267..1465337) Variovorax paradoxus S110 7973030 YP_002943267.1 CDS Vapar_1350 NC_012791.1 1465451 1465936 D KEGG: rpe:RPE_2275 peptidase C14, caspase catalytic subunit P20; hypothetical protein 1465451..1465936 Variovorax paradoxus S110 7973031 YP_002943268.1 CDS Vapar_1351 NC_012791.1 1465950 1466408 D PFAM: ribonuclease H; KEGG: pol:Bpro_4830 ribonuclease H; ribonuclease H 1465950..1466408 Variovorax paradoxus S110 7973032 YP_002943269.1 CDS Vapar_1352 NC_012791.1 1466452 1466700 D KEGG: dac:Daci_1103 hypothetical protein; hypothetical protein 1466452..1466700 Variovorax paradoxus S110 7973033 YP_002943270.1 CDS Vapar_1353 NC_012791.1 1466927 1468738 D KEGG: ccs:CCNA_02115 secreted pectate lyase-family protein; secreted pectate lyase-family protein 1466927..1468738 Variovorax paradoxus S110 7973034 YP_002943271.1 CDS Vapar_1354 NC_012791.1 1468752 1469273 D PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: tbd:Tbd_1195 hypothetical protein; Appr-1-p processing domain-containing protein 1468752..1469273 Variovorax paradoxus S110 7973035 YP_002943272.1 CDS Vapar_1355 NC_012791.1 1469296 1475334 R PFAM: alpha-2-macroglobulin; alpha-2-macroglobulin 2; alpha-2-macroglobulin; KEGG: pna:Pnap_3110 alpha-2-macroglobulin domain-containing protein; alpha-2-macroglobulin complement(1469296..1475334) Variovorax paradoxus S110 7973036 YP_002943273.1 CDS Vapar_1356 NC_012791.1 1475486 1476628 D KEGG: aav:Aave_1952 acyltransferase family protein; acyltransferase family protein 1475486..1476628 Variovorax paradoxus S110 7973037 YP_002943274.1 CDS Vapar_1357 NC_012791.1 1476648 1477421 R PFAM: lipolytic protein G-D-S-L family; KEGG: aav:Aave_1951 GDSL family lipase; G-D-S-L family lipolytic protein complement(1476648..1477421) Variovorax paradoxus S110 7973038 YP_002943275.1 CDS Vapar_1358 NC_012791.1 1477584 1478120 D KEGG: xcv:XCV1903 secreted protein; hypothetical protein 1477584..1478120 Variovorax paradoxus S110 7973039 YP_002943276.1 CDS Vapar_1359 NC_012791.1 1478138 1479439 D KEGG: dac:Daci_5313 hypothetical protein; hypothetical protein 1478138..1479439 Variovorax paradoxus S110 7973040 YP_002943277.1 CDS Vapar_1360 NC_012791.1 1479453 1480931 R PFAM: rhomboid family protein; KEGG: dac:Daci_5314 rhomboid family protein; rhomboid family protein complement(1479453..1480931) Variovorax paradoxus S110 7973041 YP_002943278.1 CDS Vapar_1361 NC_012791.1 1480947 1482344 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(1480947..1482344) Variovorax paradoxus S110 7973042 YP_002943279.1 CDS Vapar_1362 NC_012791.1 1482367 1483467 D PFAM: histidine kinase internal region; KEGG: dia:Dtpsy_2665 histidine kinase internal region; histidine kinase internal region 1482367..1483467 Variovorax paradoxus S110 7973043 YP_002943280.1 CDS Vapar_1363 NC_012791.1 1483464 1484210 D PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; KEGG: pna:Pnap_3096 response regulator receiver protein; LytTR family two component transcriptional regulator 1483464..1484210 Variovorax paradoxus S110 7973044 YP_002943281.1 CDS Vapar_1364 NC_012791.1 1484207 1485469 D PFAM: protein of unknown function UPF0118; KEGG: aav:Aave_2002 hypothetical protein; hypothetical protein 1484207..1485469 Variovorax paradoxus S110 7973045 YP_002943282.1 CDS Vapar_1365 NC_012791.1 1485549 1486697 D KEGG: aav:Aave_1866 hypothetical protein; hypothetical protein 1485549..1486697 Variovorax paradoxus S110 7973046 YP_002943283.1 CDS Vapar_1366 NC_012791.1 1486697 1487455 D KEGG: nar:Saro_2955 hypothetical protein; hypothetical protein 1486697..1487455 Variovorax paradoxus S110 7973047 YP_002943284.1 CDS Vapar_1367 NC_012791.1 1487469 1488875 D PFAM: outer membrane porin; KEGG: pen:PSEEN2388 porin, OprD family; outer membrane porin 1487469..1488875 Variovorax paradoxus S110 7973048 YP_002943285.1 CDS Vapar_1368 NC_012791.1 1488898 1490145 R PFAM: major facilitator superfamily MFS_1; KEGG: sfu:Sfum_3501 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1488898..1490145) Variovorax paradoxus S110 7973049 YP_002943286.1 CDS Vapar_1369 NC_012791.1 1490132 1490665 R PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_3435 GCN5-related N-acetyltransferase; phosphinothricin acetyltransferase complement(1490132..1490665) Variovorax paradoxus S110 7973050 YP_002943287.1 CDS Vapar_1370 NC_012791.1 1490715 1491656 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_3436 LysR family transcriptional regulator; LysR family transcriptional regulator 1490715..1491656 Variovorax paradoxus S110 7973051 YP_002943288.1 CDS Vapar_1371 NC_012791.1 1491637 1492875 R PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_1381 major facilitator transporter; major facilitator superfamily protein complement(1491637..1492875) Variovorax paradoxus S110 7973052 YP_002943289.1 CDS Vapar_1372 NC_012791.1 1493035 1493610 R hypothetical protein complement(1493035..1493610) Variovorax paradoxus S110 7973053 YP_002943290.1 CDS Vapar_1373 NC_012791.1 1493607 1496450 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(1493607..1496450) Variovorax paradoxus S110 7973054 YP_002943291.1 CDS hemC NC_012791.1 1496533 1497459 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1496533..1497459 Variovorax paradoxus S110 7973055 YP_002943292.1 CDS Vapar_1375 NC_012791.1 1497477 1498250 D PFAM: uroporphyrinogen III synthase HEM4; KEGG: rfr:Rfer_1716 uroporphyrinogen III synthase; uroporphyrinogen III synthase HEM4 1497477..1498250 Variovorax paradoxus S110 7973056 YP_002943293.1 CDS Vapar_1376 NC_012791.1 1498247 1499338 D PFAM: protein of unknown function DUF513 hemX; KEGG: vei:Veis_1038 protein of unknown function DUF513, HemX; hypothetical protein 1498247..1499338 Variovorax paradoxus S110 7973057 YP_002943294.1 CDS Vapar_1377 NC_012791.1 1499340 1500623 D PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain-containing protein; HemY domain-containing protein 1499340..1500623 Variovorax paradoxus S110 7973058 YP_002943295.1 CDS Vapar_1378 NC_012791.1 1500738 1503962 R KEGG: aav:Aave_1173 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; ribonuclease, Rne/Rng family complement(1500738..1503962) Variovorax paradoxus S110 7973059 YP_002943296.1 CDS Vapar_1379 NC_012791.1 1504522 1505634 D KEGG: aav:Aave_1174 RluA family pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; RluA family pseudouridine synthase 1504522..1505634 Variovorax paradoxus S110 7973060 YP_002943297.1 CDS Vapar_1380 NC_012791.1 1505627 1506298 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rfr:Rfer_1722 HAD family hydrolase; HAD superfamily hydrolase 1505627..1506298 Variovorax paradoxus S110 7973061 YP_002943298.1 CDS Vapar_1381 NC_012791.1 1506309 1506680 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3657 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 1506309..1506680 Variovorax paradoxus S110 7973062 YP_002943299.1 CDS Vapar_1382 NC_012791.1 1506683 1507726 D PFAM: peptidase S49; KEGG: pol:Bpro_3656 peptidase S49; peptidase S49 1506683..1507726 Variovorax paradoxus S110 7972677 YP_002943300.1 CDS Vapar_1383 NC_012791.1 1507748 1508902 R PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_0434 major facilitator transporter; major facilitator superfamily protein complement(1507748..1508902) Variovorax paradoxus S110 7971211 YP_002943301.1 CDS Vapar_1384 NC_012791.1 1508905 1509669 R PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rfr:Rfer_1725 uroporphyrin-III C/tetrapyrrole methyltransferase; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase complement(1508905..1509669) Variovorax paradoxus S110 7971212 YP_002943302.1 CDS Vapar_1385 NC_012791.1 1509666 1510247 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: dia:Dtpsy_2637 maf protein; maf protein complement(1509666..1510247) Variovorax paradoxus S110 7971213 YP_002943303.1 CDS Vapar_1386 NC_012791.1 1510331 1510888 D PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein; hypothetical protein 1510331..1510888 Variovorax paradoxus S110 7971214 YP_002943304.1 CDS rpmF NC_012791.1 1511035 1511217 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1511035..1511217 Variovorax paradoxus S110 7971215 YP_002943305.1 CDS Vapar_1388 NC_012791.1 1511336 1512376 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1511336..1512376 Variovorax paradoxus S110 7971216 YP_002943306.1 CDS Vapar_1389 NC_012791.1 1512376 1513353 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 1512376..1513353 Variovorax paradoxus S110 7971217 YP_002943307.1 CDS Vapar_1390 NC_012791.1 1513406 1514359 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; KEGG: ajs:Ajs_3279 [acyl-carrier-protein] S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 1513406..1514359 Variovorax paradoxus S110 7971218 YP_002943308.1 CDS Vapar_1391 NC_012791.1 1514386 1515129 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_3647 3-oxoacyl-[acyl-carrier-protein] reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 1514386..1515129 Variovorax paradoxus S110 7971219 YP_002943309.1 CDS acpP NC_012791.1 1515228 1515467 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1515228..1515467 Variovorax paradoxus S110 7971220 YP_002943310.1 CDS Vapar_1393 NC_012791.1 1515564 1516808 D TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: pna:Pnap_3070 beta-ketoacyl synthase; 3-oxoacyl-(acyl-carrier-protein) synthase 2 1515564..1516808 Variovorax paradoxus S110 7971221 YP_002943311.1 CDS Vapar_1394 NC_012791.1 1516822 1517304 D KEGG: pna:Pnap_3069 hypothetical protein; hypothetical protein 1516822..1517304 Variovorax paradoxus S110 7971222 YP_002943312.1 CDS Vapar_1395 NC_012791.1 1517314 1517988 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1517314..1517988 Variovorax paradoxus S110 7971223 YP_002943313.1 CDS Vapar_1396 NC_012791.1 1518006 1518674 D PFAM: anti sigma-E protein RseA family protein; KEGG: dia:Dtpsy_2626 anti sigma-E protein, RseA; anti sigma-E protein, RseA 1518006..1518674 Variovorax paradoxus S110 7971224 YP_002943314.1 CDS Vapar_1397 NC_012791.1 1518695 1519765 D KEGG: pol:Bpro_3641 sigma E regulatory protein, MucB/RseB; sigma E regulatory protein, MucB/RseB 1518695..1519765 Variovorax paradoxus S110 7971225 YP_002943315.1 CDS Vapar_1398 NC_012791.1 1519865 1521355 D KEGG: rfr:Rfer_1739 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; protease Do 1519865..1521355 Variovorax paradoxus S110 7971226 YP_002943316.1 CDS Vapar_1399 NC_012791.1 1521878 1523689 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1521878..1523689 Variovorax paradoxus S110 7971227 YP_002943317.1 CDS Vapar_1400 NC_012791.1 1523699 1524664 D KEGG: dia:Dtpsy_2622 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1523699..1524664 Variovorax paradoxus S110 7971228 YP_002943318.1 CDS Vapar_1401 NC_012791.1 1524696 1525064 D KEGG: pol:Bpro_3636 transmembrane protein; transmembrane protein 1524696..1525064 Variovorax paradoxus S110 7971229 YP_002943319.1 CDS rnc NC_012791.1 1525082 1525768 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1525082..1525768 Variovorax paradoxus S110 7971230 YP_002943320.1 CDS Vapar_1403 NC_012791.1 1525776 1526741 D TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; KEGG: aav:Aave_1197 GTP-binding protein Era; GTP-binding protein Era 1525776..1526741 Variovorax paradoxus S110 7971231 YP_002943321.1 CDS Vapar_1404 NC_012791.1 1526743 1527516 D TIGRFAM: DNA repair protein RecO; PFAM: recombination protein O RecO; KEGG: ajs:Ajs_3265 DNA repair protein RecO; DNA repair protein RecO 1526743..1527516 Variovorax paradoxus S110 7971232 YP_002943322.1 CDS Vapar_1405 NC_012791.1 1527513 1528277 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1527513..1528277 Variovorax paradoxus S110 7971233 YP_002943323.1 CDS acpS NC_012791.1 1528291 1528683 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1528291..1528683 Variovorax paradoxus S110 7971234 YP_002943324.1 CDS Vapar_1407 NC_012791.1 1528680 1529786 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: dac:Daci_5256 beta-N-acetylhexosaminidase; glycoside hydrolase family 3 domain-containing protein 1528680..1529786 Variovorax paradoxus S110 7971235 YP_002943325.1 CDS Vapar_1408 NC_012791.1 1529794 1530327 R PFAM: protein of unknown function DUF45; KEGG: azo:azo0661 hypothetical protein; hypothetical protein complement(1529794..1530327) Variovorax paradoxus S110 7971236 YP_002943326.1 CDS Vapar_1409 NC_012791.1 1530329 1531591 R KEGG: dac:Daci_1060 molecular chaperone, HSP70 class; molecular chaperone, HSP70 class complement(1530329..1531591) Variovorax paradoxus S110 7971237 YP_002943327.1 CDS lysS NC_012791.1 1531594 1533156 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(1531594..1533156) Variovorax paradoxus S110 7971238 YP_002943328.1 CDS Vapar_1411 NC_012791.1 1533280 1533951 R PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; KEGG: pol:Bpro_3619 peptidase S16, lon-like; peptidase S16 lon domain-containing protein complement(1533280..1533951) Variovorax paradoxus S110 7971239 YP_002943329.1 CDS Vapar_1412 NC_012791.1 1533977 1534537 D PFAM: protein of unknown function YGGT; KEGG: aav:Aave_1212 protein of unknown function YGGT; hypothetical protein 1533977..1534537 Variovorax paradoxus S110 7971240 YP_002943330.1 CDS Vapar_1413 NC_012791.1 1534550 1535422 R TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit beta; KEGG: pol:Bpro_3618 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(1534550..1535422) Variovorax paradoxus S110 7971241 YP_002943331.1 CDS trpA NC_012791.1 1535486 1536343 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1535486..1536343) Variovorax paradoxus S110 7971242 YP_002943332.1 CDS Vapar_1415 NC_012791.1 1536415 1537692 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1536415..1537692) Variovorax paradoxus S110 7971243 YP_002943333.1 CDS Vapar_1416 NC_012791.1 1537742 1538437 R PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dia:Dtpsy_2591 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase complement(1537742..1538437) Variovorax paradoxus S110 7971244 YP_002943334.1 CDS truA NC_012791.1 1538434 1539246 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1538434..1539246) Variovorax paradoxus S110 7971245 YP_002943335.1 CDS Vapar_1418 NC_012791.1 1539280 1542081 R KEGG: aav:Aave_1218 transmembrane protein; transmembrane protein complement(1539280..1542081) Variovorax paradoxus S110 7971246 YP_002943336.1 CDS Vapar_1419 NC_012791.1 1542249 1543391 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(1542249..1543391) Variovorax paradoxus S110 7971247 YP_002943337.1 CDS Vapar_1420 NC_012791.1 1543482 1544570 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(1543482..1544570) Variovorax paradoxus S110 7971248 YP_002943338.1 CDS leuD NC_012791.1 1544611 1545261 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(1544611..1545261) Variovorax paradoxus S110 7971249 YP_002943339.1 CDS Vapar_1422 NC_012791.1 1545280 1546701 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(1545280..1546701) Variovorax paradoxus S110 7971250 YP_002943340.1 CDS Vapar_1423 NC_012791.1 1546744 1547691 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_3607 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1546744..1547691) Variovorax paradoxus S110 7971251 YP_002943341.1 CDS Vapar_1424 NC_012791.1 1547874 1548014 R PFAM: Entericidin EcnAB; KEGG: sml:Smlt0342 entericidin A precursor; Entericidin EcnAB complement(1547874..1548014) Variovorax paradoxus S110 7971252 YP_002943342.1 CDS gltA NC_012791.1 1548164 1549474 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(1548164..1549474) Variovorax paradoxus S110 7971253 YP_002943343.1 CDS Vapar_1426 NC_012791.1 1549499 1549822 R PFAM: protein of unknown function DUF339; KEGG: pol:Bpro_3604 protein of unknown function DUF339; hypothetical protein complement(1549499..1549822) Variovorax paradoxus S110 7971254 YP_002943344.1 CDS Vapar_1427 NC_012791.1 1549842 1550543 R TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: pol:Bpro_3603 succinate dehydrogenase subunit B; succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(1549842..1550543) Variovorax paradoxus S110 7971255 YP_002943345.1 CDS Vapar_1428 NC_012791.1 1550571 1552379 R TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: aav:Aave_2202 succinate dehydrogenase subunit A; succinate dehydrogenase or fumarate reductase, flavoprotein subunit complement(1550571..1552379) Variovorax paradoxus S110 7971256 YP_002943346.1 CDS Vapar_1429 NC_012791.1 1552387 1552752 R TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: pol:Bpro_3601 succinate dehydrogenase subunit D; succinate dehydrogenase, hydrophobic membrane anchor protein complement(1552387..1552752) Variovorax paradoxus S110 7971257 YP_002943347.1 CDS Vapar_1430 NC_012791.1 1552766 1553212 R TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: ajs:Ajs_2793 succinate dehydrogenase subunit C; succinate dehydrogenase, cytochrome b556 subunit complement(1552766..1553212) Variovorax paradoxus S110 7971258 YP_002943348.1 CDS Vapar_1431 NC_012791.1 1553437 1554249 R PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: aav:Aave_2205 GntR family transcriptional regulator; GntR family transcriptional regulator complement(1553437..1554249) Variovorax paradoxus S110 7971259 YP_002943349.1 CDS Vapar_1432 NC_012791.1 1554379 1555365 D catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 1554379..1555365 Variovorax paradoxus S110 7971260 YP_002943350.1 CDS Vapar_1433 NC_012791.1 1555381 1556160 D catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase 1555381..1556160 Variovorax paradoxus S110 7971261 YP_002943351.1 CDS Vapar_1434 NC_012791.1 1556157 1557155 D PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase; HpcH/HpaI aldolase 1556157..1557155 Variovorax paradoxus S110 7971262 YP_002943352.1 CDS Vapar_1435 NC_012791.1 1557189 1557740 D KEGG: dac:Daci_2432 hypothetical protein; hypothetical protein 1557189..1557740 Variovorax paradoxus S110 7971263 YP_002943353.1 CDS Vapar_1436 NC_012791.1 1557828 1560416 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1557828..1560416 Variovorax paradoxus S110 7971264 YP_002943354.1 CDS Vapar_1437 NC_012791.1 1560608 1562866 D PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain protein; KEGG: pfl:PFL_2939 acyl-CoA dehydrogenase; hypothetical protein 1560608..1562866 Variovorax paradoxus S110 7971265 YP_002943355.1 CDS Vapar_1438 NC_012791.1 1562772 1563626 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dac:Daci_2438 XRE family transcriptional regulator; XRE family transcriptional regulator complement(1562772..1563626) Variovorax paradoxus S110 7971266 YP_002943356.1 CDS Vapar_1439 NC_012791.1 1563750 1564163 D KEGG: dac:Daci_2439 hypothetical protein; hypothetical protein 1563750..1564163 Variovorax paradoxus S110 7971267 YP_002943357.1 CDS Vapar_1440 NC_012791.1 1564317 1567184 D TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: pol:Bpro_3592 aconitate hydratase; aconitate hydratase 1 1564317..1567184 Variovorax paradoxus S110 7971268 YP_002943358.1 CDS Vapar_1441 NC_012791.1 1567181 1567633 D TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: psa:PST_4015 phosphoesterase; phosphodiesterase 1567181..1567633 Variovorax paradoxus S110 7971269 YP_002943359.1 CDS Vapar_1442 NC_012791.1 1567737 1568087 D PFAM: FeoA family protein; KEGG: dac:Daci_2175 FeoA family protein; FeoA family protein 1567737..1568087 Variovorax paradoxus S110 7971270 YP_002943360.1 CDS Vapar_1443 NC_012791.1 1568080 1569975 D TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: aav:Aave_1161 ferrous iron transport protein B; ferrous iron transport protein B 1568080..1569975 Variovorax paradoxus S110 7971271 YP_002943361.1 CDS Vapar_1444 NC_012791.1 1570039 1570329 D KEGG: dac:Daci_2177 hypothetical protein; hypothetical protein 1570039..1570329 Variovorax paradoxus S110 7971272 YP_002943362.1 CDS Vapar_1445 NC_012791.1 1570335 1571519 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_3591 salicylate 1-monooxygenase; FAD-binding monooxygenase 1570335..1571519 Variovorax paradoxus S110 7971273 YP_002943363.1 CDS Vapar_1446 NC_012791.1 1571557 1572807 R KEGG: bur:Bcep18194_C6648 hypothetical protein; hypothetical protein complement(1571557..1572807) Variovorax paradoxus S110 7971274 YP_002943364.1 CDS Vapar_1447 NC_012791.1 1572872 1573720 R TIGRFAM: tryptophan 2,3-dioxygenase; PFAM: tryptophan 23-dioxygenase; KEGG: dac:Daci_2161 tryptophan 2,3-dioxygenase; tryptophan 2,3-dioxygenase complement(1572872..1573720) Variovorax paradoxus S110 7971275 YP_002943365.1 CDS Vapar_1448 NC_012791.1 1573717 1574994 R TIGRFAM: kynureninase; PFAM: aminotransferase class V; KEGG: pna:Pnap_3019 kynureninase; kynureninase complement(1573717..1574994) Variovorax paradoxus S110 7971276 YP_002943366.1 CDS Vapar_1449 NC_012791.1 1575006 1575659 R TIGRFAM: arylformamidase; PFAM: cyclase family protein; KEGG: pol:Bpro_3588 cyclase; arylformamidase complement(1575006..1575659) Variovorax paradoxus S110 7971277 YP_002943367.1 CDS Vapar_1450 NC_012791.1 1575740 1576048 R PFAM: protein of unknown function UPF0153; KEGG: aav:Aave_1159 hypothetical protein; hypothetical protein complement(1575740..1576048) Variovorax paradoxus S110 7971278 YP_002943368.1 CDS Vapar_1451 NC_012791.1 1576073 1577008 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1576073..1577008) Variovorax paradoxus S110 7971279 YP_002943369.1 CDS Vapar_1452 NC_012791.1 1577005 1578213 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(1577005..1578213) Variovorax paradoxus S110 7971280 YP_002943370.1 CDS Vapar_1453 NC_012791.1 1578374 1578694 D KEGG: dac:Daci_2180 hypothetical protein; hypothetical protein 1578374..1578694 Variovorax paradoxus S110 7971281 YP_002943371.1 CDS rpsT NC_012791.1 1578833 1579147 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1578833..1579147) Variovorax paradoxus S110 7971282 YP_002943372.1 CDS Vapar_1455 NC_012791.1 1579253 1580806 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: dac:Daci_2182 integral membrane protein MviN; integral membrane protein MviN 1579253..1580806 Variovorax paradoxus S110 7971283 YP_002943373.1 CDS Vapar_1456 NC_012791.1 1580895 1581746 D PFAM: transglutaminase; KEGG: pol:Bpro_3568 hypothetical protein; transglutaminase 1580895..1581746 Variovorax paradoxus S110 7971284 YP_002943374.1 CDS Vapar_1457 NC_012791.1 1581746 1582174 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B4070 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1581746..1582174 Variovorax paradoxus S110 7971285 YP_002943375.1 CDS Vapar_1458 NC_012791.1 1582304 1582732 D PFAM: YCII-related; KEGG: scl:sce6416 hypothetical protein; YCII-like protein 1582304..1582732 Variovorax paradoxus S110 7971286 YP_002943376.1 CDS Vapar_1459 NC_012791.1 1582762 1583181 D PFAM: YCII-related; KEGG: rpb:RPB_1804 DGPF protein; YCII-like protein 1582762..1583181 Variovorax paradoxus S110 7971287 YP_002943377.1 CDS Vapar_1460 NC_012791.1 1583185 1584498 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: scl:sce6417 ECF subfamily RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 1583185..1584498 Variovorax paradoxus S110 7971288 YP_002943378.1 CDS Vapar_1461 NC_012791.1 1584525 1585520 R PFAM: ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: aav:Aave_1966 AraC family transcriptional regulator; AraC family transcriptional regulator complement(1584525..1585520) Variovorax paradoxus S110 7971289 YP_002943379.1 CDS Vapar_1462 NC_012791.1 1585484 1586110 R PFAM: ThiJ/PfpI domain protein; KEGG: rfr:Rfer_2521 ThiJ/PfpI; ThiJ/PfpI domain-containing protein complement(1585484..1586110) Variovorax paradoxus S110 7971290 YP_002943380.1 CDS Vapar_1463 NC_012791.1 1586107 1586691 R PFAM: isochorismatase hydrolase; KEGG: aav:Aave_1968 isochorismatase hydrolase; isochorismatase hydrolase complement(1586107..1586691) Variovorax paradoxus S110 7971291 YP_002943381.1 CDS Vapar_1464 NC_012791.1 1586800 1587864 R KEGG: dia:Dtpsy_2422 hypothetical protein; hypothetical protein complement(1586800..1587864) Variovorax paradoxus S110 7974203 YP_002943382.1 CDS Vapar_1465 NC_012791.1 1587907 1588947 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1587907..1588947) Variovorax paradoxus S110 7973063 YP_002943383.1 CDS Vapar_1466 NC_012791.1 1589052 1589753 D TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: rfr:Rfer_2511 chromosomal replication initiator, DnaA; DnaA regulatory inactivator Hda 1589052..1589753 Variovorax paradoxus S110 7973064 YP_002943384.1 CDS Vapar_1467 NC_012791.1 1589773 1591413 D KEGG: aav:Aave_1973 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: polynucleotide adenylyltransferase region; poly(A) polymerase 1589773..1591413 Variovorax paradoxus S110 7973065 YP_002943385.1 CDS Vapar_1468 NC_012791.1 1591602 1592060 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: rfr:Rfer_2508 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1591602..1592060 Variovorax paradoxus S110 7973066 YP_002943386.1 CDS Vapar_1469 NC_012791.1 1592177 1592821 D PFAM: protein of unknown function DUF47; KEGG: dia:Dtpsy_2707 protein of unknown function DUF47; hypothetical protein 1592177..1592821 Variovorax paradoxus S110 7973067 YP_002943387.1 CDS Vapar_1470 NC_012791.1 1592835 1593845 D PFAM: phosphate transporter; KEGG: dia:Dtpsy_2706 phosphate transporter; phosphate transporter 1592835..1593845 Variovorax paradoxus S110 7973068 YP_002943388.1 CDS Vapar_1471 NC_012791.1 1593870 1594316 R KEGG: rfr:Rfer_1400 hypothetical protein; hypothetical protein complement(1593870..1594316) Variovorax paradoxus S110 7973069 YP_002943389.1 CDS Vapar_1472 NC_012791.1 1594313 1594837 R PFAM: GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_2704 GCN5-related N-acetyltransferase; phosphinothricin acetyltransferase complement(1594313..1594837) Variovorax paradoxus S110 7973070 YP_002943390.1 CDS Vapar_1473 NC_012791.1 1595021 1595284 D TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: vei:Veis_3939 ribosomal protein S16; 30S ribosomal protein S16 1595021..1595284 Variovorax paradoxus S110 7973071 YP_002943391.1 CDS rimM NC_012791.1 1595301 1595855 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1595301..1595855 Variovorax paradoxus S110 7973072 YP_002943392.1 CDS trmD NC_012791.1 1595872 1596618 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1595872..1596618 Variovorax paradoxus S110 7973073 YP_002943393.1 CDS Vapar_1476 NC_012791.1 1596712 1597095 D TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: dia:Dtpsy_2700 ribosomal protein L19; 50S ribosomal protein L19 1596712..1597095 Variovorax paradoxus S110 7973074 YP_002943394.1 CDS Vapar_1477 NC_012791.1 1597255 1597974 D PFAM: NUDIX hydrolase; KEGG: dac:Daci_5341 NUDIX hydrolase; NUDIX hydrolase 1597255..1597974 Variovorax paradoxus S110 7973075 YP_002943395.1 CDS Vapar_1478 NC_012791.1 1598023 1599024 D PFAM: cobalamin biosynthesis protein CbiB; KEGG: ajs:Ajs_3350 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CbiB 1598023..1599024 Variovorax paradoxus S110 7973076 YP_002943396.1 CDS Vapar_1479 NC_012791.1 1599038 1600126 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1599038..1600126 Variovorax paradoxus S110 7973077 YP_002943397.1 CDS Vapar_1480 NC_012791.1 1600120 1601076 R TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: rfr:Rfer_1409 GTPase EngC; ribosome small subunit-dependent GTPase A complement(1600120..1601076) Variovorax paradoxus S110 7973078 YP_002943398.1 CDS Vapar_1481 NC_012791.1 1601092 1601439 R PFAM: transcriptional coactivator/pterin dehydratase; KEGG: dia:Dtpsy_2696 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase complement(1601092..1601439) Variovorax paradoxus S110 7973079 YP_002943399.1 CDS Vapar_1482 NC_012791.1 1601468 1602733 R PFAM: peptidase M48 Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase; Ste24 endopeptidase complement(1601468..1602733) Variovorax paradoxus S110 7973080 YP_002943400.1 CDS Vapar_1483 NC_012791.1 1602792 1603388 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1602792..1603388 Variovorax paradoxus S110 7973081 YP_002943401.1 CDS Vapar_1484 NC_012791.1 1603559 1605544 D PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein 1603559..1605544 Variovorax paradoxus S110 7973082 YP_002943402.1 CDS Vapar_1485 NC_012791.1 1605760 1606833 D PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: sil:SPO1466 opine dehydrogenase; Opine dehydrogenase 1605760..1606833 Variovorax paradoxus S110 7973083 YP_002943403.1 CDS Vapar_1486 NC_012791.1 1606823 1607830 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 1606823..1607830 Variovorax paradoxus S110 7973084 YP_002943404.1 CDS Vapar_1487 NC_012791.1 1607827 1608630 D PFAM: alpha/beta hydrolase fold; KEGG: bpt:Bpet4532 3-oxoadipate enol-lactone hydrolase; alpha/beta hydrolase fold protein 1607827..1608630 Variovorax paradoxus S110 7973085 YP_002943405.1 CDS Vapar_1488 NC_012791.1 1608627 1609505 D PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: gur:Gura_3312 alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 1608627..1609505 Variovorax paradoxus S110 7973086 YP_002943406.1 CDS Vapar_1489 NC_012791.1 1609536 1610012 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: vei:Veis_2878 MarR family transcriptional regulator; MarR family transcriptional regulator complement(1609536..1610012) Variovorax paradoxus S110 7973087 YP_002943407.1 CDS Vapar_1490 NC_012791.1 1610172 1612364 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rso:RSc1829 indolepyruvate ferredoxin alpha subunit oxidoreductase protein; indolepyruvate ferredoxin oxidoreductase 1610172..1612364 Variovorax paradoxus S110 7973088 YP_002943408.1 CDS Vapar_1491 NC_012791.1 1612369 1613877 D Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit B 1612369..1613877 Variovorax paradoxus S110 7973089 YP_002943409.1 CDS Vapar_1492 NC_012791.1 1613898 1614890 D PFAM: ferredoxin; oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: vei:Veis_2680 ferredoxin; ferredoxin 1613898..1614890 Variovorax paradoxus S110 7973090 YP_002943410.1 CDS Vapar_1493 NC_012791.1 1614910 1616223 D PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, subunit alpha-like; KEGG: vei:Veis_2679 Rieske (2Fe-2S) domain-containing protein; Rieske (2Fe-2S) domain-containing protein 1614910..1616223 Variovorax paradoxus S110 7973091 YP_002943411.1 CDS Vapar_1494 NC_012791.1 1616223 1616711 D PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: vei:Veis_2678 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 1616223..1616711 Variovorax paradoxus S110 7973092 YP_002943412.1 CDS Vapar_1495 NC_012791.1 1616719 1618344 D PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_2677 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1616719..1618344 Variovorax paradoxus S110 7973093 YP_002943413.1 CDS Vapar_1496 NC_012791.1 1618341 1619513 D KEGG: vei:Veis_2676 hypothetical protein; hypothetical protein 1618341..1619513 Variovorax paradoxus S110 7973094 YP_002943414.1 CDS Vapar_1497 NC_012791.1 1619510 1620763 D PFAM: protein of unknown function DUF35; short-chain dehydrogenase/reductase SDR; KEGG: vei:Veis_2675 hypothetical protein; hypothetical protein 1619510..1620763 Variovorax paradoxus S110 7973095 YP_002943415.1 CDS Vapar_1498 NC_012791.1 1620781 1621593 D PFAM: cyclase family protein; KEGG: vei:Veis_2674 cyclase family protein; cyclase family protein 1620781..1621593 Variovorax paradoxus S110 7973096 YP_002943416.1 CDS Vapar_1499 NC_012791.1 1621733 1622455 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: vei:Veis_2673 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1621733..1622455 Variovorax paradoxus S110 7973097 YP_002943417.1 CDS Vapar_1500 NC_012791.1 1622509 1623675 D PFAM: extracellular ligand-binding receptor; KEGG: vei:Veis_2672 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1622509..1623675 Variovorax paradoxus S110 7973098 YP_002943418.1 CDS Vapar_1501 NC_012791.1 1624009 1625154 D PFAM: extracellular ligand-binding receptor; KEGG: vei:Veis_2672 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1624009..1625154 Variovorax paradoxus S110 7973099 YP_002943419.1 CDS Vapar_1502 NC_012791.1 1625176 1626501 D PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, subunit alpha-like; KEGG: vei:Veis_2671 Rieske (2Fe-2S) domain-containing protein; Rieske (2Fe-2S) domain-containing protein 1625176..1626501 Variovorax paradoxus S110 7973100 YP_002943420.1 CDS Vapar_1503 NC_012791.1 1626498 1626965 D PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: vei:Veis_2669 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 1626498..1626965 Variovorax paradoxus S110 7973101 YP_002943421.1 CDS Vapar_1504 NC_012791.1 1627009 1628172 D PFAM: extracellular ligand-binding receptor; KEGG: vei:Veis_2668 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1627009..1628172 Variovorax paradoxus S110 7973102 YP_002943422.1 CDS Vapar_1505 NC_012791.1 1628216 1629271 D PFAM: inner-membrane translocator; KEGG: vei:Veis_2875 inner-membrane translocator; inner-membrane translocator 1628216..1629271 Variovorax paradoxus S110 7973103 YP_002943423.1 CDS Vapar_1506 NC_012791.1 1629268 1631055 D PFAM: ABC transporter; inner-membrane translocator; SMART: ATPase AAA; KEGG: vei:Veis_2874 ABC transporter; ABC transporter 1629268..1631055 Variovorax paradoxus S110 7973104 YP_002943424.1 CDS Vapar_1507 NC_012791.1 1631138 1631869 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_2873 ABC transporter; ABC transporter 1631138..1631869 Variovorax paradoxus S110 7973105 YP_002943425.1 CDS Vapar_1508 NC_012791.1 1631859 1633466 D PFAM: AMP-dependent synthetase and ligase; KEGG: bcj:BCAM2136 crotonobetaine/carnitine-CoA ligase; crotonobetaine/carnitine-CoA ligase 1631859..1633466 Variovorax paradoxus S110 7973106 YP_002943426.1 CDS Vapar_1509 NC_012791.1 1633463 1634224 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_4190 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1633463..1634224 Variovorax paradoxus S110 7973107 YP_002943427.1 CDS Vapar_1510 NC_012791.1 1634277 1635053 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_A2460 beta-hydroxyacyl-CoA dehydrogenase; short-chain dehydrogenase/reductase SDR 1634277..1635053 Variovorax paradoxus S110 7973108 YP_002943428.1 CDS Vapar_1511 NC_012791.1 1635053 1635580 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RS02009 transcription regulator protein; MarR family transcriptional regulator 1635053..1635580 Variovorax paradoxus S110 7973109 YP_002943429.1 CDS Vapar_1512 NC_012791.1 1635580 1636038 D KEGG: rso:RSc1827 4-hydroxybenzoyl-CoA thioesterase protein; 4-hydroxybenzoyl-CoA thioesterase protein 1635580..1636038 Variovorax paradoxus S110 7973110 YP_002943430.1 CDS Vapar_1513 NC_012791.1 1636045 1636227 R hypothetical protein complement(1636045..1636227) Variovorax paradoxus S110 7973111 YP_002943431.1 CDS Vapar_1514 NC_012791.1 1636421 1636831 D hypothetical protein 1636421..1636831 Variovorax paradoxus S110 7973112 YP_002943432.1 CDS Vapar_1515 NC_012791.1 1637126 1637833 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rme:Rmet_4813 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1637126..1637833 Variovorax paradoxus S110 7973114 YP_002943433.1 CDS Vapar_1516 NC_012791.1 1638092 1638238 D hypothetical protein 1638092..1638238 Variovorax paradoxus S110 7973115 YP_002943434.1 CDS Vapar_1517 NC_012791.1 1638249 1638833 D PFAM: peptidase A24A prepilin type IV; KEGG: nmu:Nmul_A2362 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 1638249..1638833 Variovorax paradoxus S110 7973116 YP_002943435.1 CDS Vapar_1518 NC_012791.1 1638876 1639718 D TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bph:Bphy_5320 Flp pilus assembly protein CpaB; Flp pilus assembly protein CpaB 1638876..1639718 Variovorax paradoxus S110 7973117 YP_002943436.1 CDS Vapar_1519 NC_012791.1 1639741 1641255 D PFAM: type II and III secretion system protein; transport-associated; KEGG: eba:ebA3713 outer membrane channel protein; type II and III secretion system protein 1639741..1641255 Variovorax paradoxus S110 7973118 YP_002943437.1 CDS Vapar_1520 NC_012791.1 1641276 1641557 D KEGG: eba:ebA3712 pilus-associated lipoprotein; pilus-associated lipoprotein 1641276..1641557 Variovorax paradoxus S110 7973119 YP_002943438.1 CDS Vapar_1521 NC_012791.1 1641686 1641895 D KEGG: bav:BAV2534 pilin subunit; hypothetical protein 1641686..1641895 Variovorax paradoxus S110 7973120 YP_002943439.1 CDS Vapar_1522 NC_012791.1 1641981 1642157 D PFAM: Flp/Fap pilin component; KEGG: avi:Avi_0223 component of type 4 pilus pilin subunit protein; Flp/Fap pilin component 1641981..1642157 Variovorax paradoxus S110 7973121 YP_002943440.1 CDS Vapar_1523 NC_012791.1 1642246 1642422 D hypothetical protein 1642246..1642422 Variovorax paradoxus S110 7973122 YP_002943441.1 CDS Vapar_1524 NC_012791.1 1642468 1643697 D KEGG: nmu:Nmul_A2358 hypothetical protein; hypothetical protein 1642468..1643697 Variovorax paradoxus S110 7973123 YP_002943442.1 CDS Vapar_1525 NC_012791.1 1643708 1644166 D PFAM: TadE family protein; KEGG: reu:Reut_A2654 TadE-like; TadE family protein 1643708..1644166 Variovorax paradoxus S110 7973124 YP_002943443.1 CDS Vapar_1526 NC_012791.1 1644163 1644612 D PFAM: TadE family protein; KEGG: rpi:Rpic_0585 TadE family protein; TadE family protein 1644163..1644612 Variovorax paradoxus S110 7973125 YP_002943444.1 CDS Vapar_1527 NC_012791.1 1644644 1645795 D KEGG: pol:Bpro_2554 response regulator receiver domain protein (CheY-like); response regulator receiver protein 1644644..1645795 Variovorax paradoxus S110 7973126 YP_002943445.1 CDS Vapar_1528 NC_012791.1 1645850 1647223 D PFAM: type II secretion system protein E; KEGG: nmu:Nmul_A2354 type II secretion system protein E; type II secretion system protein E 1645850..1647223 Variovorax paradoxus S110 7973127 YP_002943446.1 CDS Vapar_1529 NC_012791.1 1647233 1648225 D PFAM: type II secretion system protein; KEGG: pol:Bpro_2556 type II secretion system protein; type II secretion system protein 1647233..1648225 Variovorax paradoxus S110 7973128 YP_002943447.1 CDS Vapar_1530 NC_012791.1 1648238 1649143 D PFAM: type II secretion system protein; KEGG: eba:ebA3702 type II secretion system protein; type II secretion system protein 1648238..1649143 Variovorax paradoxus S110 7973129 YP_002943448.1 CDS Vapar_1531 NC_012791.1 1649163 1649852 R PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: rfr:Rfer_0782 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator complement(1649163..1649852) Variovorax paradoxus S110 7973130 YP_002943449.1 CDS Vapar_1532 NC_012791.1 1649871 1651562 R PFAM: histidine kinase dimerisation and phosphoacceptor region; KEGG: afw:Anae109_3354 histidine kinase; histidine kinase dimerisation and phosphoacceptor region complement(1649871..1651562) Variovorax paradoxus S110 7973131 YP_002943450.1 CDS Vapar_1533 NC_012791.1 1652053 1652919 D KEGG: pol:Bpro_1716 hypothetical protein; hypothetical protein 1652053..1652919 Variovorax paradoxus S110 7973133 YP_002943451.1 CDS Vapar_1534 NC_012791.1 1652931 1653908 R TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: dia:Dtpsy_2679 guanosine monophosphate reductase; guanosine 5'-monophosphate oxidoreductase complement(1652931..1653908) Variovorax paradoxus S110 7973134 YP_002943452.1 CDS Vapar_1535 NC_012791.1 1654252 1654713 D TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: har:HEAR1365 azurin precursor; azurin 1654252..1654713 Variovorax paradoxus S110 7973135 YP_002943453.1 CDS Vapar_1536 NC_012791.1 1654775 1657204 D PFAM: UvrD/REP helicase; KEGG: pol:Bpro_1723 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 1654775..1657204 Variovorax paradoxus S110 7973136 YP_002943454.1 CDS Vapar_1537 NC_012791.1 1657321 1661049 D KEGG: vei:Veis_4945 hypothetical protein; hypothetical protein 1657321..1661049 Variovorax paradoxus S110 7973137 YP_002943455.1 CDS Vapar_1538 NC_012791.1 1661046 1662584 D KEGG: vei:Veis_4946 hypothetical protein; hypothetical protein 1661046..1662584 Variovorax paradoxus S110 7973138 YP_002943456.1 CDS Vapar_1539 NC_012791.1 1662597 1663421 R KEGG: aav:Aave_1927 hypothetical protein; hypothetical protein complement(1662597..1663421) Variovorax paradoxus S110 7973139 YP_002943457.1 CDS Vapar_1540 NC_012791.1 1663432 1664478 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(1663432..1664478) Variovorax paradoxus S110 7973140 YP_002943458.1 CDS Vapar_1541 NC_012791.1 1664522 1664887 R KEGG: dac:Daci_5326 hypothetical protein; hypothetical protein complement(1664522..1664887) Variovorax paradoxus S110 7973141 YP_002943459.1 CDS Vapar_1542 NC_012791.1 1664985 1667807 D KEGG: pol:Bpro_1729 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2; 5'-3' exonuclease; DNA polymerase I 1664985..1667807 Variovorax paradoxus S110 7973142 YP_002943460.1 CDS Vapar_1543 NC_012791.1 1667839 1669125 D catalyzes the release of C-terminal glutamate residues from N-acylating moieties; glutamate carboxypeptidase 1667839..1669125 Variovorax paradoxus S110 7973143 YP_002943461.1 CDS Vapar_1544 NC_012791.1 1669133 1670035 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_1998 LysR family transcriptional regulator; LysR family transcriptional regulator 1669133..1670035 Variovorax paradoxus S110 7970313 YP_002943462.1 CDS Vapar_1545 NC_012791.1 1670054 1671274 R PFAM: FAD dependent oxidoreductase; KEGG: vei:Veis_4738 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase complement(1670054..1671274) Variovorax paradoxus S110 7974774 YP_002943463.1 CDS Vapar_1546 NC_012791.1 1671510 1672397 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: vei:Veis_4737 extracellular solute-binding protein; family 3 extracellular solute-binding protein 1671510..1672397 Variovorax paradoxus S110 7974775 YP_002943464.1 CDS Vapar_1547 NC_012791.1 1672418 1673155 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: vei:Veis_4736 aspartate racemase; aspartate racemase 1672418..1673155 Variovorax paradoxus S110 7974776 YP_002943465.1 CDS Vapar_1548 NC_012791.1 1673272 1674171 D PFAM: dienelactone hydrolase; KEGG: aav:Aave_1943 carboxymethylenebutenolidase; carboxymethylenebutenolidase 1673272..1674171 Variovorax paradoxus S110 7974777 YP_002943466.1 CDS Vapar_1549 NC_012791.1 1674250 1675155 D PFAM: zinc/iron permease; KEGG: aav:Aave_1944 zinc/iron permease; zinc/iron permease 1674250..1675155 Variovorax paradoxus S110 7974778 YP_002943467.1 CDS Vapar_1550 NC_012791.1 1675290 1675502 D KEGG: hypothetical protein; hypothetical protein 1675290..1675502 Variovorax paradoxus S110 7974779 YP_002943468.1 CDS Vapar_1551 NC_012791.1 1675509 1676969 R PFAM: D-aminoacylase domain protein; amidohydrolase; amidohydrolase; KEGG: rme:Rmet_5093 D-aminoacylase-like protein; N-acyl-D-amino-acid deacylase complement(1675509..1676969) Variovorax paradoxus S110 7974780 YP_002943469.1 CDS Vapar_1552 NC_012791.1 1677328 1678326 R KEGG: reh:H16_B1124 ABC-type transporter; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(1677328..1678326) Variovorax paradoxus S110 7974781 YP_002943470.1 CDS Vapar_1553 NC_012791.1 1678323 1679351 R KEGG: vei:Veis_1864 oligopeptide/dipeptide ABC transporter ATPase; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase complement(1678323..1679351) Variovorax paradoxus S110 7974782 YP_002943471.1 CDS Vapar_1554 NC_012791.1 1679360 1680259 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_5090 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(1679360..1680259) Variovorax paradoxus S110 7974783 YP_002943472.1 CDS Vapar_1555 NC_012791.1 1680286 1681221 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B1127 ABC-type transporter permease component: PepT family; binding-protein-dependent transport systems inner membrane component complement(1680286..1681221) Variovorax paradoxus S110 7974784 YP_002943473.1 CDS Vapar_1556 NC_012791.1 1681243 1682820 R PFAM: extracellular solute-binding protein family 5; KEGG: reh:H16_B1128 ABC-type transporter periplasmic component: PepT family; family 5 extracellular solute-binding protein complement(1681243..1682820) Variovorax paradoxus S110 7974785 YP_002943474.1 CDS Vapar_1557 NC_012791.1 1682852 1684303 R PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; KEGG: reh:H16_B1129 hypothetical protein; Microcystin LR degradation protein MlrC-like protein complement(1682852..1684303) Variovorax paradoxus S110 7974786 YP_002943475.1 CDS Vapar_1558 NC_012791.1 1684337 1685497 R PFAM: FAD dependent oxidoreductase; KEGG: reh:H16_B1130 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1684337..1685497) Variovorax paradoxus S110 7974787 YP_002943476.1 CDS Vapar_1559 NC_012791.1 1685647 1686435 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: reh:H16_B1131 transcriptional regulator; XRE family transcriptional regulator 1685647..1686435 Variovorax paradoxus S110 7974788 YP_002943477.1 CDS Vapar_1560 NC_012791.1 1686533 1687801 D catalyzes the release of C-terminal glutamate residues from N-acylating moieties; glutamate carboxypeptidase 1686533..1687801 Variovorax paradoxus S110 7974789 YP_002943478.1 CDS Vapar_1561 NC_012791.1 1687827 1689776 R KEGG: bcm:Bcenmc03_3637 hypothetical protein; hypothetical protein complement(1687827..1689776) Variovorax paradoxus S110 7974790 YP_002943479.1 CDS Vapar_1562 NC_012791.1 1689929 1690570 R KEGG: lch:Lcho_3556 hypothetical protein; hypothetical protein complement(1689929..1690570) Variovorax paradoxus S110 7974791 YP_002943480.1 CDS Vapar_1563 NC_012791.1 1690574 1691836 R PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A1825 hypothetical protein; hypothetical protein complement(1690574..1691836) Variovorax paradoxus S110 7974792 YP_002943481.1 CDS Vapar_1564 NC_012791.1 1691838 1692587 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_3395 ABC transporter; ABC transporter complement(1691838..1692587) Variovorax paradoxus S110 7974793 YP_002943482.1 CDS Vapar_1565 NC_012791.1 1692592 1693173 R KEGG: vei:Veis_3396 ABC-type metal ion transport system, periplasmic component/surface adhesin; ABC-type metal ion transport system, periplasmic component/surface adhesin complement(1692592..1693173) Variovorax paradoxus S110 7974794 YP_002943483.1 CDS Vapar_1566 NC_012791.1 1693170 1694078 R PFAM: rhodanese domainprotein; SMART: Rhodanese domain protein; KEGG: aav:Aave_2010 3-mercaptopyruvate sulfurtransferase; rhodanese domain-containing protein complement(1693170..1694078) Variovorax paradoxus S110 7974795 YP_002943484.1 CDS Vapar_1567 NC_012791.1 1694117 1695034 R KEGG: aav:Aave_2011 transmembrane protein; transmembrane protein complement(1694117..1695034) Variovorax paradoxus S110 7974796 YP_002943485.1 CDS Vapar_1568 NC_012791.1 1695057 1696199 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_2878 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein complement(1695057..1696199) Variovorax paradoxus S110 7974797 YP_002943486.1 CDS Vapar_1569 NC_012791.1 1696412 1696678 D TIGRFAM: exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII small subunit; KEGG: pol:Bpro_1745 exodeoxyribonuclease VII small subunit; exodeoxyribonuclease VII small subunit 1696412..1696678 Variovorax paradoxus S110 7974798 YP_002943487.1 CDS Vapar_1570 NC_012791.1 1696675 1697592 D PFAM: polyprenyl synthetase; KEGG: dia:Dtpsy_0955 polyprenyl synthetase; polyprenyl synthetase 1696675..1697592 Variovorax paradoxus S110 7974799 YP_002943488.1 CDS Vapar_1571 NC_012791.1 1697589 1699487 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1697589..1699487 Variovorax paradoxus S110 7974800 YP_002943489.1 CDS Vapar_1572 NC_012791.1 1699600 1700682 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vei:Veis_3284 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP 1699600..1700682 Variovorax paradoxus S110 7974801 YP_002943490.1 CDS Vapar_1573 NC_012791.1 1700798 1702582 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pna:Pnap_1503 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1700798..1702582) Variovorax paradoxus S110 7974802 YP_002943491.1 CDS Vapar_1574 NC_012791.1 1702595 1703191 R PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pna:Pnap_1504 tripartite ATP-independent periplasmic transporter DctQ; tripartite ATP-independent periplasmic transporter DctQ component complement(1702595..1703191) Variovorax paradoxus S110 7974803 YP_002943492.1 CDS Vapar_1575 NC_012791.1 1703390 1704682 D PFAM: protein of unknown function DUF323; KEGG: pna:Pnap_1506 hypothetical protein; hypothetical protein 1703390..1704682 Variovorax paradoxus S110 7974804 YP_002943493.1 CDS Vapar_1576 NC_012791.1 1704701 1706152 R PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: rme:Rmet_4810 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1704701..1706152) Variovorax paradoxus S110 7974805 YP_002943494.1 CDS Vapar_1577 NC_012791.1 1706189 1707298 R PFAM: regulatory protein LysR; KEGG: bbr:BB2126 hypothetical protein; molybdate metabolism LysR family transcriptional regulator complement(1706189..1707298) Variovorax paradoxus S110 7974806 YP_002943495.1 CDS Vapar_1578 NC_012791.1 1707365 1708720 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(1707365..1708720) Variovorax paradoxus S110 7974807 YP_002943496.1 CDS Vapar_1579 NC_012791.1 1708828 1709775 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_4102 LysR family transcriptional regulator; LysR family transcriptional regulator 1708828..1709775 Variovorax paradoxus S110 7974808 YP_002943497.1 CDS Vapar_1580 NC_012791.1 1709947 1710732 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ppg:PputGB1_0666 regulatory protein GntR HTH; GntR family transcriptional regulator complement(1709947..1710732) Variovorax paradoxus S110 7974809 YP_002943498.1 CDS Vapar_1581 NC_012791.1 1710921 1712126 D PFAM: extracellular ligand-binding receptor; KEGG: dia:Dtpsy_3458 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1710921..1712126 Variovorax paradoxus S110 7974810 YP_002943499.1 CDS Vapar_1582 NC_012791.1 1712152 1713012 D PFAM: inner-membrane translocator; KEGG: dac:Daci_6024 inner-membrane translocator; inner-membrane translocator 1712152..1713012 Variovorax paradoxus S110 7974811 YP_002943500.1 CDS Vapar_1583 NC_012791.1 1713021 1713980 D PFAM: inner-membrane translocator; KEGG: dac:Daci_6025 inner-membrane translocator; inner-membrane translocator 1713021..1713980 Variovorax paradoxus S110 7974812 YP_002943501.1 CDS Vapar_1584 NC_012791.1 1713977 1714744 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dac:Daci_6026 ABC transporter; ABC transporter 1713977..1714744 Variovorax paradoxus S110 7974813 YP_002943502.1 CDS Vapar_1585 NC_012791.1 1714741 1715454 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aav:Aave_4754 ABC transporter-related protein; ABC transporter 1714741..1715454 Variovorax paradoxus S110 7974814 YP_002943503.1 CDS Vapar_1586 NC_012791.1 1715489 1716745 D KEGG: aav:Aave_4755 amidase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; amidase, hydantoinase/carbamoylase family 1715489..1716745 Variovorax paradoxus S110 7974815 YP_002943504.1 CDS Vapar_1587 NC_012791.1 1716742 1718214 D PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; KEGG: aav:Aave_4756 MlrC domain-containing protein; Microcystin LR degradation protein MlrC-like protein 1716742..1718214 Variovorax paradoxus S110 7974816 YP_002943505.1 CDS Vapar_1588 NC_012791.1 1718310 1719065 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_1509 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1718310..1719065 Variovorax paradoxus S110 7974817 YP_002943506.1 CDS Vapar_1589 NC_012791.1 1719062 1719781 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_1759 ABC transporter; ABC transporter 1719062..1719781 Variovorax paradoxus S110 7974818 YP_002943507.1 CDS Vapar_1590 NC_012791.1 1719778 1720638 D PFAM: extracellular solute-binding protein family 1; KEGG: azo:azo3832 ABC-type tungstate transport system, permease component; family 1 extracellular solute-binding protein 1719778..1720638 Variovorax paradoxus S110 7974819 YP_002943508.1 CDS Vapar_1591 NC_012791.1 1720745 1721122 D KEGG: ara:Arad_2792 hypothetical protein; hypothetical protein 1720745..1721122 Variovorax paradoxus S110 7974820 YP_002943509.1 CDS Vapar_1592 NC_012791.1 1721132 1722331 R PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: pol:Bpro_1769 transcriptional regulator, fis family; Fis family transcriptional regulator complement(1721132..1722331) Variovorax paradoxus S110 7974821 YP_002943510.1 CDS Vapar_1593 NC_012791.1 1722450 1722947 D PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: pol:Bpro_0578 (2Fe-2S)-binding; (2Fe-2S)-binding domain-containing protein 1722450..1722947 Variovorax paradoxus S110 7974822 YP_002943511.1 CDS Vapar_1594 NC_012791.1 1722961 1725345 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dac:Daci_2249 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1722961..1725345 Variovorax paradoxus S110 7974823 YP_002943512.1 CDS Vapar_1595 NC_012791.1 1725377 1726168 D PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: pol:Bpro_0576 molybdopterin dehydrogenase, FAD-binding; FAD-binding molybdopterin dehydrogenase 1725377..1726168 Variovorax paradoxus S110 7974824 YP_002943513.1 CDS Vapar_1596 NC_012791.1 1726239 1727225 D PFAM: ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: pol:Bpro_0575 ATPase associated with various cellular activities, AAA_5; ATPase 1726239..1727225 Variovorax paradoxus S110 7974825 YP_002943514.1 CDS Vapar_1597 NC_012791.1 1727253 1728467 D PFAM: VWA containing CoxE family protein; KEGG: pol:Bpro_0574 VWA containing CoxE-like; von Willebrand factor A 1727253..1728467 Variovorax paradoxus S110 7974826 YP_002943515.1 CDS Vapar_1598 NC_012791.1 1728499 1729113 D PFAM: carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G 1728499..1729113 Variovorax paradoxus S110 7974827 YP_002943516.1 CDS Vapar_1599 NC_012791.1 1729128 1730150 D PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_0572 protein of unknown function DUF182; hypothetical protein 1729128..1730150 Variovorax paradoxus S110 7974828 YP_002943517.1 CDS Vapar_1600 NC_012791.1 1730166 1730522 R TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: aav:Aave_3294 Na+/H+ antiporter subunit; monovalent cation/proton antiporter, MnhG/PhaG subunit complement(1730166..1730522) Variovorax paradoxus S110 7974829 YP_002943518.1 CDS Vapar_1601 NC_012791.1 1730519 1730797 R PFAM: multiple resistance and pH regulation protein F; KEGG: pna:Pnap_1520 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F complement(1730519..1730797) Variovorax paradoxus S110 7974830 YP_002943519.1 CDS Vapar_1602 NC_012791.1 1730794 1731285 R KEGG: pna:Pnap_1521 monovalent cation/H+ antiporter subunit E; monovalent cation/H+ antiporter subunit E complement(1730794..1731285) Variovorax paradoxus S110 7974831 YP_002943520.1 CDS Vapar_1603 NC_012791.1 1731282 1732988 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D complement(1731282..1732988) Variovorax paradoxus S110 7974832 YP_002943521.1 CDS Vapar_1604 NC_012791.1 1732985 1733338 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C complement(1732985..1733338) Variovorax paradoxus S110 7974833 YP_002943522.1 CDS Vapar_1605 NC_012791.1 1733338 1736289 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A complement(1733338..1736289) Variovorax paradoxus S110 7974834 YP_002943523.1 CDS Vapar_1606 NC_012791.1 1736377 1736754 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(1736377..1736754) Variovorax paradoxus S110 7974835 YP_002943524.1 CDS Vapar_1607 NC_012791.1 1736786 1738087 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dia:Dtpsy_1375 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1736786..1738087) Variovorax paradoxus S110 7974836 YP_002943525.1 CDS Vapar_1608 NC_012791.1 1738080 1738589 R PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dia:Dtpsy_1376 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter DctQ component complement(1738080..1738589) Variovorax paradoxus S110 7974837 YP_002943526.1 CDS Vapar_1609 NC_012791.1 1738611 1739579 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dia:Dtpsy_1377 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(1738611..1739579) Variovorax paradoxus S110 7974838 YP_002943527.1 CDS Vapar_1610 NC_012791.1 1739793 1740134 R KEGG: pol:Bpro_1783 hypothetical protein; hypothetical protein complement(1739793..1740134) Variovorax paradoxus S110 7974839 YP_002943528.1 CDS Vapar_1611 NC_012791.1 1740284 1741462 R KEGG: aav:Aave_3288 hypothetical protein; tetratricopeptide repeat-containing protein complement(1740284..1741462) Variovorax paradoxus S110 7974840 YP_002943529.1 CDS Vapar_1612 NC_012791.1 1741452 1741790 R KEGG: ajs:Ajs_2471 hypothetical protein; hypothetical protein complement(1741452..1741790) Variovorax paradoxus S110 7974841 YP_002943530.1 CDS Vapar_1613 NC_012791.1 1741836 1742150 R KEGG: pol:Bpro_1788 integration host factor, beta subunit; TIGRFAM: integration host factor, subunit beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; integration host factor subunit beta complement(1741836..1742150) Variovorax paradoxus S110 7974842 YP_002943531.1 CDS rpsA NC_012791.1 1742222 1743910 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1742222..1743910) Variovorax paradoxus S110 7974843 YP_002943532.1 CDS Vapar_1615 NC_012791.1 1744140 1746152 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase complement(1744140..1746152) Variovorax paradoxus S110 7974844 YP_002943533.1 CDS Vapar_1616 NC_012791.1 1746154 1747035 R PFAM: prephenate dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pna:Pnap_2794 prephenate dehydrogenase; prephenate dehydrogenase complement(1746154..1747035) Variovorax paradoxus S110 7974845 YP_002943534.1 CDS Vapar_1617 NC_012791.1 1747050 1748171 R TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; chorismate mutase; KEGG: dia:Dtpsy_1394 chorismate mutase; chorismate mutase complement(1747050..1748171) Variovorax paradoxus S110 7974846 YP_002943535.1 CDS Vapar_1618 NC_012791.1 1748196 1749329 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(1748196..1749329) Variovorax paradoxus S110 7974847 YP_002943536.1 CDS Vapar_1619 NC_012791.1 1749331 1749921 R KEGG: lch:Lcho_0960 hypothetical protein; hypothetical protein complement(1749331..1749921) Variovorax paradoxus S110 7974848 YP_002943537.1 CDS Vapar_1620 NC_012791.1 1749918 1752563 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(1749918..1752563) Variovorax paradoxus S110 7974849 YP_002943538.1 CDS Vapar_1621 NC_012791.1 1752789 1753442 D PFAM: OmpA/MotB domain protein; KEGG: dac:Daci_4718 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein 1752789..1753442 Variovorax paradoxus S110 7974850 YP_002943539.1 CDS Vapar_1622 NC_012791.1 1753569 1754297 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1753569..1754297 Variovorax paradoxus S110 7974851 YP_002943540.1 CDS Vapar_1623 NC_012791.1 1754294 1754962 D TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: dac:Daci_4716 phosphoglycolate phosphatase; phosphoglycolate phosphatase 1754294..1754962 Variovorax paradoxus S110 7974852 YP_002943541.1 CDS Vapar_1624 NC_012791.1 1755466 1757094 D PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: ara:Arad_8002 methyltransferase protein; type 12 methyltransferase 1755466..1757094 Variovorax paradoxus S110 7974854 YP_002943542.1 CDS Vapar_1625 NC_012791.1 1757136 1758872 D KEGG: rso:RSp0274 gamma-glutamyltranspeptidase signal peptide protein; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1757136..1758872 Variovorax paradoxus S110 7974693 YP_002943543.1 CDS Vapar_1626 NC_012791.1 1758933 1759682 D PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: pna:Pnap_2786 pseudouridine synthase; pseudouridine synthase 1758933..1759682 Variovorax paradoxus S110 7974694 YP_002943544.1 CDS Vapar_1627 NC_012791.1 1759764 1760771 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1802 hypothetical protein; 40-residue YVTN family beta-propeller repeat-containing protein 1759764..1760771 Variovorax paradoxus S110 7974695 YP_002943545.1 CDS Vapar_1628 NC_012791.1 1760755 1761567 D PFAM: polysaccharide deacetylase; KEGG: aav:Aave_1438 polysaccharide deacetylase; polysaccharide deacetylase 1760755..1761567 Variovorax paradoxus S110 7974696 YP_002943546.1 CDS Vapar_1629 NC_012791.1 1761578 1762552 D PFAM: fatty acid hydroxylase; KEGG: aav:Aave_1439 hypothetical protein; fatty acid hydroxylase 1761578..1762552 Variovorax paradoxus S110 7974697 YP_002943547.1 CDS Vapar_1630 NC_012791.1 1762591 1763475 D KEGG: ajs:Ajs_1187 transmembrane protein; transmembrane protein 1762591..1763475 Variovorax paradoxus S110 7974698 YP_002943548.1 CDS Vapar_1631 NC_012791.1 1763472 1764272 D PFAM: molybdopterin binding domain; KEGG: pol:Bpro_1806 molybdopterin binding domain; molybdopterin binding domain-containing protein 1763472..1764272 Variovorax paradoxus S110 7974699 YP_002943549.1 CDS Vapar_1632 NC_012791.1 1764419 1765834 D TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: mpt:Mpe_A2076 L-glutamine synthetase; glutamine synthetase 1764419..1765834 Variovorax paradoxus S110 7974700 YP_002943550.1 CDS Vapar_1633 NC_012791.1 1766048 1766554 D KEGG: rfr:Rfer_2980 signal peptide protein; signal peptide protein 1766048..1766554 Variovorax paradoxus S110 7974701 YP_002943551.1 CDS Vapar_1634 NC_012791.1 1766559 1767638 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_1809 signal transduction histidine kinase, nitrogen specific, NtrB; nitrogen specific signal transduction histidine kinase NtrB 1766559..1767638 Variovorax paradoxus S110 7974702 YP_002943552.1 CDS Vapar_1635 NC_012791.1 1767662 1769197 D KEGG: pol:Bpro_1810 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; nitrogen metabolism transcriptional regulator, NtrC, Fis Family 1767662..1769197 Variovorax paradoxus S110 7974703 YP_002943553.1 CDS Vapar_1636 NC_012791.1 1769340 1769852 R KEGG: dia:Dtpsy_1044 hypothetical protein; hypothetical protein complement(1769340..1769852) Variovorax paradoxus S110 7974704 YP_002943554.1 CDS Vapar_1637 NC_012791.1 1769852 1770637 R KEGG: pna:Pnap_2776 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(1769852..1770637) Variovorax paradoxus S110 7974705 YP_002943555.1 CDS Vapar_1638 NC_012791.1 1770849 1771736 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hypothetical protein; short-chain dehydrogenase/reductase SDR complement(1770849..1771736) Variovorax paradoxus S110 7974706 YP_002943556.1 CDS Vapar_1639 NC_012791.1 1771803 1772288 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bsu:BSU40010 hypothetical protein; MarR family transcriptional regulator 1771803..1772288 Variovorax paradoxus S110 7974707 YP_002943557.1 CDS Vapar_1640 NC_012791.1 1772913 1774544 R KEGG: vei:Veis_4194 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(1772913..1774544) Variovorax paradoxus S110 7974708 YP_002943558.1 CDS Vapar_1641 NC_012791.1 1774632 1775618 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_4195 hypothetical protein; hypothetical protein complement(1774632..1775618) Variovorax paradoxus S110 7974709 YP_002943559.1 CDS Vapar_1642 NC_012791.1 1775721 1776689 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_4196 LysR family transcriptional regulator; LysR family transcriptional regulator 1775721..1776689 Variovorax paradoxus S110 7974710 YP_002943560.1 CDS Vapar_1643 NC_012791.1 1777200 1778099 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_3099 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1777200..1778099) Variovorax paradoxus S110 7974711 YP_002943561.1 CDS Vapar_1644 NC_012791.1 1778203 1779369 D PFAM: mandelate racemase/muconate lactonizing protein; KEGG: pol:Bpro_3098 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 1778203..1779369 Variovorax paradoxus S110 7974712 YP_002943562.1 CDS Vapar_1645 NC_012791.1 1779399 1780376 D PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A3143 hypothetical protein; hypothetical protein 1779399..1780376 Variovorax paradoxus S110 7974713 YP_002943563.1 CDS Vapar_1647 NC_012791.1 1780769 1781527 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bcm:Bcenmc03_2495 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1780769..1781527) Variovorax paradoxus S110 7974715 YP_002943564.1 CDS Vapar_1648 NC_012791.1 1781627 1782226 D PFAM: regulatory protein TetR; KEGG: bcm:Bcenmc03_2496 TetR family transcriptional regulator; TetR family transcriptional regulator 1781627..1782226 Variovorax paradoxus S110 7974716 YP_002943565.1 CDS Vapar_1649 NC_012791.1 1782326 1783651 R PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_6361 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1782326..1783651) Variovorax paradoxus S110 7974717 YP_002943566.1 CDS Vapar_1650 NC_012791.1 1783672 1784391 R PFAM: protein of unknown function DUF861 cupin_3; KEGG: bpy:Bphyt_5906 protein of unknown function DUF861 cupin_3; hypothetical protein complement(1783672..1784391) Variovorax paradoxus S110 7974718 YP_002943567.1 CDS Vapar_1651 NC_012791.1 1784433 1785914 R PFAM: aldehyde dehydrogenase; KEGG: aav:Aave_2805 aldehyde dehydrogenase; aldehyde dehydrogenase (NAD(+)) complement(1784433..1785914) Variovorax paradoxus S110 7974719 YP_002943568.1 CDS Vapar_1652 NC_012791.1 1786071 1786907 R KEGG: scl:sce5972 hypothetical protein; hypothetical protein complement(1786071..1786907) Variovorax paradoxus S110 7974720 YP_002943569.1 CDS Vapar_1653 NC_012791.1 1787038 1787814 D PFAM: metallophosphoesterase; KEGG: mno:Mnod_0482 metallophosphoesterase; metallophosphoesterase 1787038..1787814 Variovorax paradoxus S110 7974721 YP_002943570.1 CDS Vapar_1654 NC_012791.1 1787959 1788138 D KEGG: xcv:XCV2613 hypothetical protein; hypothetical protein 1787959..1788138 Variovorax paradoxus S110 7974722 YP_002943571.1 CDS Vapar_1655 NC_012791.1 1788191 1789147 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: scl:sce8091 cation efflux protein; cation diffusion facilitator family transporter 1788191..1789147 Variovorax paradoxus S110 7974723 YP_002943572.1 CDS Vapar_1656 NC_012791.1 1789227 1789406 D hypothetical protein 1789227..1789406 Variovorax paradoxus S110 7974724 YP_002943573.1 CDS Vapar_1657 NC_012791.1 1789581 1791086 D KEGG: psa:PST_2885 circadian oscillation regulator; PFAM: KaiA binding; Circadian clock protein KaiC central region; SMART: ATPase AAA; circadian clock protein, KaiC 1789581..1791086 Variovorax paradoxus S110 7974725 YP_002943574.1 CDS Vapar_1658 NC_012791.1 1791083 1792639 D PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: bph:Bphy_5975 histidine kinase; histidine kinase 1791083..1792639 Variovorax paradoxus S110 7974726 YP_002943575.1 CDS Vapar_1659 NC_012791.1 1792629 1793642 D KEGG: mpt:Mpe_A0046 hypothetical protein; hypothetical protein 1792629..1793642 Variovorax paradoxus S110 7974727 YP_002943576.1 CDS ligD NC_012791.1 1793621 1796164 D catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 1793621..1796164 Variovorax paradoxus S110 7974728 YP_002943577.1 CDS Vapar_1661 NC_012791.1 1796151 1796390 R hypothetical protein complement(1796151..1796390) Variovorax paradoxus S110 7974729 YP_002943578.1 CDS Vapar_1662 NC_012791.1 1796551 1797672 R KEGG: hypothetical protein; hypothetical protein complement(1796551..1797672) Variovorax paradoxus S110 7974730 YP_002943579.1 CDS Vapar_1663 NC_012791.1 1797669 1798202 R PFAM: dihydrofolate reductase region; KEGG: pna:Pnap_2773 dihydrofolate reductase; Dihydrofolate reductase complement(1797669..1798202) Variovorax paradoxus S110 7974731 YP_002943580.1 CDS thyA NC_012791.1 1798207 1799076 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1798207..1799076) Variovorax paradoxus S110 7974732 YP_002943581.1 CDS Vapar_1665 NC_012791.1 1799083 1799709 D KEGG: rpb:RPB_2704 nitrile hydratase, alpha subunit; TIGRFAM: nitrile hydratase, subunit alpha; PFAM: nitrile hydratase alpha chain; nitrile hydratase subunit alpha 1799083..1799709 Variovorax paradoxus S110 7974733 YP_002943582.1 CDS Vapar_1666 NC_012791.1 1799706 1800371 D PFAM: nitrile hydratase subunit beta; KEGG: rpa:RPA2806 nitrile hydratase subunit beta; nitrile hydratase 1799706..1800371 Variovorax paradoxus S110 7974734 YP_002943583.1 CDS Vapar_1667 NC_012791.1 1800368 1800742 D KEGG: bja:bll4496 hypothetical protein; hypothetical protein 1800368..1800742 Variovorax paradoxus S110 7974735 YP_002943584.1 CDS Vapar_1668 NC_012791.1 1800878 1802311 R PFAM: FAD linked oxidase; KEGG: aav:Aave_1452 FAD linked oxidase domain-containing protein; FAD linked oxidase complement(1800878..1802311) Variovorax paradoxus S110 7974736 YP_002943585.1 CDS Vapar_1669 NC_012791.1 1802308 1802715 R KEGG: pna:Pnap_2770 membrane protein-like protein; hypothetical protein complement(1802308..1802715) Variovorax paradoxus S110 7974737 YP_002943586.1 CDS Vapar_1670 NC_012791.1 1802816 1804027 D TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_1830 ribonuclease BN; ribonuclease BN 1802816..1804027 Variovorax paradoxus S110 7974738 YP_002943587.1 CDS Vapar_1671 NC_012791.1 1804034 1804372 R KEGG: dac:Daci_4965 membrane protein; membrane protein complement(1804034..1804372) Variovorax paradoxus S110 7974739 YP_002943588.1 CDS Vapar_1672 NC_012791.1 1804474 1804857 D PFAM: Thioredoxin domain; KEGG: pna:Pnap_2768 hypothetical protein; thioredoxin 1804474..1804857 Variovorax paradoxus S110 7974740 YP_002943589.1 CDS Vapar_1673 NC_012791.1 1804872 1805537 D KEGG: mms:mma_1622 hypothetical protein; hypothetical protein 1804872..1805537 Variovorax paradoxus S110 7974741 YP_002943590.1 CDS Vapar_1674 NC_012791.1 1805541 1806479 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_3122 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1805541..1806479) Variovorax paradoxus S110 7974742 YP_002943591.1 CDS Vapar_1675 NC_012791.1 1806591 1808012 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aav:Aave_3123 hypothetical protein; hypothetical protein 1806591..1808012 Variovorax paradoxus S110 7974743 YP_002943592.1 CDS Vapar_1676 NC_012791.1 1808036 1809019 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_3124 hypothetical protein; hypothetical protein 1808036..1809019 Variovorax paradoxus S110 7974744 YP_002943593.1 CDS Vapar_1677 NC_012791.1 1809030 1809842 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: pol:Bpro_1835 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1809030..1809842) Variovorax paradoxus S110 7974745 YP_002943594.1 CDS Vapar_1678 NC_012791.1 1810176 1811492 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(1810176..1811492) Variovorax paradoxus S110 7974746 YP_002943595.1 CDS Vapar_1679 NC_012791.1 1811636 1812076 D PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: aav:Aave_2996 XRE family transcriptional regulator; CBS domain containing protein 1811636..1812076 Variovorax paradoxus S110 7974747 YP_002943596.1 CDS Vapar_1680 NC_012791.1 1812106 1813098 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_2519 hypothetical protein; hypothetical protein complement(1812106..1813098) Variovorax paradoxus S110 7974748 YP_002943597.1 CDS Vapar_1681 NC_012791.1 1813095 1814252 R KEGG: vei:Veis_2520 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase complement(1813095..1814252) Variovorax paradoxus S110 7974749 YP_002943598.1 CDS Vapar_1682 NC_012791.1 1814274 1815230 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_2521 LysR family transcriptional regulator; LysR family transcriptional regulator 1814274..1815230 Variovorax paradoxus S110 7974750 YP_002943599.1 CDS Vapar_1683 NC_012791.1 1815253 1816470 R TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pna:Pnap_2756 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase, intracellular complement(1815253..1816470) Variovorax paradoxus S110 7974751 YP_002943600.1 CDS Vapar_1684 NC_012791.1 1816570 1817226 D KEGG: pna:Pnap_2755 glutathione S-transferase-like protein; glutathione S-transferase-like protein 1816570..1817226 Variovorax paradoxus S110 7974752 YP_002943601.1 CDS Vapar_1685 NC_012791.1 1817252 1818073 R PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: mpt:Mpe_A2678 transcriptional regulator for mhp operon; IclR family transcriptional regulator complement(1817252..1818073) Variovorax paradoxus S110 7974753 YP_002943602.1 CDS Vapar_1686 NC_012791.1 1818186 1819181 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3683 twin-arginine translocation pathway signal; hypothetical protein 1818186..1819181 Variovorax paradoxus S110 7974754 YP_002943603.1 CDS Vapar_1687 NC_012791.1 1819204 1820553 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: swi:Swit_3062 phthalate 4,5-dioxygenase; Rieske (2Fe-2S) domain-containing protein 1819204..1820553 Variovorax paradoxus S110 7974755 YP_002943604.1 CDS Vapar_1688 NC_012791.1 1820550 1820897 R PFAM: Dopa 45-dioxygenase; KEGG: pol:Bpro_3138 hypothetical protein; Dopa 45-dioxygenase complement(1820550..1820897) Variovorax paradoxus S110 7974756 YP_002943605.1 CDS Vapar_1689 NC_012791.1 1820919 1821971 R KEGG: aba:Acid345_1846 hypothetical protein; hypothetical protein complement(1820919..1821971) Variovorax paradoxus S110 7974757 YP_002943606.1 CDS Vapar_1690 NC_012791.1 1822004 1822963 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mca:MCA0083 UbiE/COQ5 family methlytransferase; type 11 methyltransferase complement(1822004..1822963) Variovorax paradoxus S110 7974758 YP_002943607.1 CDS Vapar_1691 NC_012791.1 1822978 1823403 R PFAM: thiol-disulphide oxidoreductase DCC; KEGG: aav:Aave_1941 thiol-disulphide oxidoreductase DCC; thiol-disulfide oxidoreductase DCC complement(1822978..1823403) Variovorax paradoxus S110 7974759 YP_002943608.1 CDS Vapar_1692 NC_012791.1 1823461 1824066 R KEGG: aav:Aave_1942 transcriptional regulator-like protein; transcriptional regulator-like protein complement(1823461..1824066) Variovorax paradoxus S110 7974760 YP_002943609.1 CDS Vapar_1693 NC_012791.1 1824185 1825279 D PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pol:Bpro_3135 radical SAM; radical SAM protein 1824185..1825279 Variovorax paradoxus S110 7974761 YP_002943610.1 CDS Vapar_1694 NC_012791.1 1825520 1826944 R TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bcj:BCAM0941 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphogluconate dehydrogenase complement(1825520..1826944) Variovorax paradoxus S110 7974762 YP_002943611.1 CDS Vapar_1695 NC_012791.1 1827064 1828038 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: aav:Aave_0150 AraC family transcriptional regulator; AraC family transcriptional regulator 1827064..1828038 Variovorax paradoxus S110 7974763 YP_002943612.1 CDS Vapar_1696 NC_012791.1 1828162 1828890 D PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO3286 alpha/beta hydrolase family protein; alpha/beta hydrolase fold protein 1828162..1828890 Variovorax paradoxus S110 7974764 YP_002943613.1 CDS Vapar_1697 NC_012791.1 1828887 1829498 R PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; KEGG: pna:Pnap_2621 3'-5' exonuclease; 3'-5' exonuclease complement(1828887..1829498) Variovorax paradoxus S110 7974765 YP_002943614.1 CDS Vapar_1698 NC_012791.1 1829495 1829881 R PFAM: TfoX domain protein; KEGG: mfa:Mfla_1864 TfoX-like protein; TfoX domain-containing protein complement(1829495..1829881) Variovorax paradoxus S110 7974766 YP_002943615.1 CDS Vapar_1699 NC_012791.1 1829901 1830290 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vsp:VS_II0095 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1829901..1830290) Variovorax paradoxus S110 7974767 YP_002943616.1 CDS Vapar_1700 NC_012791.1 1830317 1830829 R PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_6940 acetyltransferase; GCN5-like N-acetyltransferaser complement(1830317..1830829) Variovorax paradoxus S110 7974768 YP_002943617.1 CDS Vapar_1701 NC_012791.1 1830857 1831732 R KEGG: rfr:Rfer_0122 carboxylesterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: esterase; S-formylglutathione hydrolase complement(1830857..1831732) Variovorax paradoxus S110 7974769 YP_002943618.1 CDS Vapar_1702 NC_012791.1 1831732 1832655 R PFAM: alpha/beta hydrolase fold; KEGG: bra:BRADO0881 alpha/beta family hydrolase; alpha/beta hydrolase fold protein complement(1831732..1832655) Variovorax paradoxus S110 7974770 YP_002943619.1 CDS Vapar_1703 NC_012791.1 1832677 1833783 R TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_1230 alcohol dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(1832677..1833783) Variovorax paradoxus S110 7974771 YP_002943620.1 CDS Vapar_1704 NC_012791.1 1833825 1834463 R PFAM: glutathione S-transferase domain; KEGG: mms:mma_1676 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(1833825..1834463) Variovorax paradoxus S110 7974772 YP_002943621.1 CDS Vapar_1705 NC_012791.1 1834460 1835323 R KEGG: mms:mma_1671 hypothetical protein; hypothetical protein complement(1834460..1835323) Variovorax paradoxus S110 7974773 YP_002943622.1 CDS Vapar_1706 NC_012791.1 1835337 1836014 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: mms:mma_1674 hypothetical protein; Rieske (2Fe-2S) domain-containing protein complement(1835337..1836014) Variovorax paradoxus S110 7973634 YP_002943623.1 CDS Vapar_1707 NC_012791.1 1836070 1836510 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1836070..1836510 Variovorax paradoxus S110 7974449 YP_002943624.1 CDS Vapar_1708 NC_012791.1 1836535 1838082 R PFAM: SpoVR family protein; KEGG: mpt:Mpe_A3777 hypothetical protein; SpoVR family protein complement(1836535..1838082) Variovorax paradoxus S110 7974450 YP_002943625.1 CDS Vapar_1709 NC_012791.1 1838079 1839371 R PFAM: protein of unknown function DUF444; KEGG: lch:Lcho_0200 hypothetical protein; hypothetical protein complement(1838079..1839371) Variovorax paradoxus S110 7974451 YP_002943626.1 CDS Vapar_1710 NC_012791.1 1839441 1841363 R PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: lch:Lcho_0199 serine protein kinase, PrkA; serine protein kinase, PrkA complement(1839441..1841363) Variovorax paradoxus S110 7974452 YP_002943627.1 CDS Vapar_1711 NC_012791.1 1842024 1843160 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1842024..1843160) Variovorax paradoxus S110 7974453 YP_002943628.1 CDS dnaK NC_012791.1 1843258 1845195 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1843258..1845195) Variovorax paradoxus S110 7974454 YP_002943629.1 CDS Vapar_1713 NC_012791.1 1845308 1845847 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1845308..1845847) Variovorax paradoxus S110 7974455 YP_002943630.1 CDS Vapar_1714 NC_012791.1 1846050 1846400 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: aav:Aave_1387 peptidylprolyl isomerase; peptidylprolyl isomerase complement(1846050..1846400) Variovorax paradoxus S110 7974456 YP_002943631.1 CDS Vapar_1715 NC_012791.1 1846507 1846971 R KEGG: pol:Bpro_3120 transcriptional regulator; transcriptional regulator complement(1846507..1846971) Variovorax paradoxus S110 7974457 YP_002943632.1 CDS psd NC_012791.1 1847151 1848002 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(1847151..1848002) Variovorax paradoxus S110 7974458 YP_002943633.1 CDS Vapar_1717 NC_012791.1 1848118 1849110 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_2597 hypothetical protein; hypothetical protein complement(1848118..1849110) Variovorax paradoxus S110 7974459 YP_002943634.1 CDS Vapar_1718 NC_012791.1 1849151 1850242 R KEGG: bra:BRADO5790 hypothetical protein; 6-phosphogluconolactonase complement(1849151..1850242) Variovorax paradoxus S110 7974460 YP_002943635.1 CDS Vapar_1719 NC_012791.1 1850239 1851219 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3516 uncharacterized protein UPF0065; hypothetical protein complement(1850239..1851219) Variovorax paradoxus S110 7974461 YP_002943636.1 CDS Vapar_1720 NC_012791.1 1851279 1852040 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: csa:Csal_1758 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1851279..1852040) Variovorax paradoxus S110 7974462 YP_002943637.1 CDS Vapar_1721 NC_012791.1 1852058 1853647 R KEGG: aav:Aave_2595 galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase complement(1852058..1853647) Variovorax paradoxus S110 7974463 YP_002943638.1 CDS Vapar_1722 NC_012791.1 1853679 1854974 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: aav:Aave_2594 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1853679..1854974) Variovorax paradoxus S110 7974464 YP_002943639.1 CDS Vapar_1723 NC_012791.1 1854983 1855471 R PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: aav:Aave_2593 tripartite ATP-independent periplasmic transporter DctQ; tripartite ATP-independent periplasmic transporter DctQ component complement(1854983..1855471) Variovorax paradoxus S110 7974465 YP_002943640.1 CDS Vapar_1724 NC_012791.1 1855615 1856592 R TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_2592 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(1855615..1856592) Variovorax paradoxus S110 7974466 YP_002943641.1 CDS Vapar_1725 NC_012791.1 1856649 1857539 R PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: pna:Pnap_1592 SMP-30/gluconolaconase/LRE domain-containing protein; SMP-30/gluconolaconase/LRE domain-containing protein complement(1856649..1857539) Variovorax paradoxus S110 7974467 YP_002943642.1 CDS Vapar_1726 NC_012791.1 1857529 1858362 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_3299 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1857529..1858362) Variovorax paradoxus S110 7974468 YP_002943643.1 CDS Vapar_1727 NC_012791.1 1858424 1859245 D PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: aav:Aave_2589 GntR family transcriptional regulator; GntR family transcriptional regulator 1858424..1859245 Variovorax paradoxus S110 7974469 YP_002943644.1 CDS Vapar_1728 NC_012791.1 1859328 1860302 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_2588 hypothetical protein; hypothetical protein 1859328..1860302 Variovorax paradoxus S110 7974470 YP_002943645.1 CDS Vapar_1729 NC_012791.1 1860346 1861257 D catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 1860346..1861257 Variovorax paradoxus S110 7974471 YP_002943646.1 CDS Vapar_1730 NC_012791.1 1861305 1861754 D KEGG: cja:CJA_0606 hypothetical protein; hypothetical protein 1861305..1861754 Variovorax paradoxus S110 7974472 YP_002943647.1 CDS Vapar_1731 NC_012791.1 1861786 1863141 D KEGG: aav:Aave_3623 glucarate dehydratase; TIGRFAM: glucarate dehydratase; PFAM: mandelate racemase/muconate lactonizing protein; glucarate dehydratase 1861786..1863141 Variovorax paradoxus S110 7974473 YP_002943648.1 CDS Vapar_1732 NC_012791.1 1863228 1864664 D PFAM: aldehyde dehydrogenase; KEGG: pna:Pnap_1598 aldehyde dehydrogenase; aldehyde dehydrogenase 1863228..1864664 Variovorax paradoxus S110 7974474 YP_002943649.1 CDS Vapar_1733 NC_012791.1 1864723 1865976 R PFAM: major facilitator superfamily MFS_1; KEGG: pde:Pden_4565 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1864723..1865976) Variovorax paradoxus S110 7974475 YP_002943650.1 CDS Vapar_1734 NC_012791.1 1866050 1867075 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB1277 LysR family transcriptional regulator; LysR family transcriptional regulator 1866050..1867075 Variovorax paradoxus S110 7974476 YP_002943651.1 CDS Vapar_1735 NC_012791.1 1866939 1868468 R PFAM: substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2516 lipoprotein transmembrane; glycine betaine ABC transporter substrate-binding protein complement(1866939..1868468) Variovorax paradoxus S110 7974477 YP_002943652.1 CDS Vapar_1736 NC_012791.1 1868601 1869653 D KEGG: bja:bll0419 hypothetical protein; hypothetical protein 1868601..1869653 Variovorax paradoxus S110 7974478 YP_002943653.1 CDS Vapar_1737 NC_012791.1 1869650 1871179 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bbr:BB2379 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein complement(1869650..1871179) Variovorax paradoxus S110 7974479 YP_002943654.1 CDS Vapar_1738 NC_012791.1 1871190 1872308 R PFAM: ABC transporter; KEGG: nmu:Nmul_A1419 hypothetical protein; ABC transporter complement(1871190..1872308) Variovorax paradoxus S110 7974480 YP_002943655.1 CDS Vapar_1739 NC_012791.1 1872322 1873455 R PFAM: ABC transporter; KEGG: bbr:BB2381 hypothetical protein; ABC transporter complement(1872322..1873455) Variovorax paradoxus S110 7974481 YP_002943656.1 CDS Vapar_1740 NC_012791.1 1873452 1875233 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nmu:Nmul_A1421 ABC transporter; ABC transporter complement(1873452..1875233) Variovorax paradoxus S110 7974482 YP_002943657.1 CDS Vapar_1741 NC_012791.1 1875366 1876376 R PFAM: secretion protein HlyD family protein; KEGG: bbr:BB2383 HlyD family secretion protein; secretion protein HlyD family protein complement(1875366..1876376) Variovorax paradoxus S110 7974483 YP_002943658.1 CDS Vapar_1742 NC_012791.1 1876476 1877183 D PFAM: TetR family transcriptional regulator ; regulatory protein TetR; KEGG: pfl:PFL_5951 TetR family transcriptional regulator; TetR family transcriptional regulator 1876476..1877183 Variovorax paradoxus S110 7974484 YP_002943659.1 CDS Vapar_1743 NC_012791.1 1877161 1878540 R PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: ajs:Ajs_3563 cardiolipin synthetase 2; phospholipase D/transphosphatidylase complement(1877161..1878540) Variovorax paradoxus S110 7974485 YP_002943660.1 CDS Vapar_1744 NC_012791.1 1878575 1879240 R PFAM: glutathione S-transferase domain; KEGG: bur:Bcep18194_C7480 glutathione S-transferase-like protein; glutathione S-transferase domain-containing protein complement(1878575..1879240) Variovorax paradoxus S110 7974486 YP_002943661.1 CDS Vapar_1745 NC_012791.1 1879268 1880389 R PFAM: methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; KEGG: pol:Bpro_3388 methionine synthase, vitamin-B12 independent; methionine synthase vitamin-B12 independent complement(1879268..1880389) Variovorax paradoxus S110 7974487 YP_002943662.1 CDS Vapar_1746 NC_012791.1 1880554 1881327 D PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pna:Pnap_2731 GntR family transcriptional regulator; GntR family transcriptional regulator 1880554..1881327 Variovorax paradoxus S110 7974488 YP_002943663.1 CDS Vapar_1747 NC_012791.1 1881503 1882678 D PFAM: extracellular ligand-binding receptor; KEGG: rfr:Rfer_0288 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1881503..1882678 Variovorax paradoxus S110 7974489 YP_002943664.1 CDS Vapar_1748 NC_012791.1 1883020 1883892 D PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0289 inner-membrane translocator; inner-membrane translocator 1883020..1883892 Variovorax paradoxus S110 7974490 YP_002943665.1 CDS Vapar_1749 NC_012791.1 1883893 1884879 D PFAM: inner-membrane translocator; KEGG: pna:Pnap_2728 inner-membrane translocator; inner-membrane translocator 1883893..1884879 Variovorax paradoxus S110 7974491 YP_002943666.1 CDS Vapar_1750 NC_012791.1 1884876 1885637 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_3381 ABC transporter; ABC transporter 1884876..1885637 Variovorax paradoxus S110 7974492 YP_002943667.1 CDS Vapar_1751 NC_012791.1 1885630 1886334 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pna:Pnap_2726 ABC transporter; ABC transporter 1885630..1886334 Variovorax paradoxus S110 7974493 YP_002943668.1 CDS Vapar_1752 NC_012791.1 1886365 1888065 D PFAM: Tannase and feruloyl esterase; KEGG: bja:bll7962 hypothetical protein; Tannase and feruloyl esterase 1886365..1888065 Variovorax paradoxus S110 7974494 YP_002943669.1 CDS Vapar_1753 NC_012791.1 1888088 1888825 R KEGG: rso:RSc1444 hypothetical protein; hypothetical protein complement(1888088..1888825) Variovorax paradoxus S110 7974495 YP_002943670.1 CDS Vapar_1754 NC_012791.1 1888813 1889712 R PFAM: beta-lactamase domain protein; KEGG: bpl:BURPS1106A_3173 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(1888813..1889712) Variovorax paradoxus S110 7974496 YP_002943671.1 CDS Vapar_1755 NC_012791.1 1889834 1890751 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_2354 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1889834..1890751) Variovorax paradoxus S110 7974497 YP_002943672.1 CDS Vapar_1756 NC_012791.1 1890850 1891797 D PFAM: pyruvate carboxyltransferase; KEGG: cti:RALTA_B2209 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 1890850..1891797 Variovorax paradoxus S110 7974498 YP_002943673.1 CDS Vapar_1757 NC_012791.1 1891794 1892999 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_3142 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1891794..1892999 Variovorax paradoxus S110 7974499 YP_002943674.1 CDS Vapar_1758 NC_012791.1 1893037 1894023 D PFAM: conserved hypothetical protein; KEGG: cti:RALTA_B2207 conserved hypothetical protein, UPF0065; exported protein; hypothetical protein 1893037..1894023 Variovorax paradoxus S110 7974500 YP_002943675.1 CDS Vapar_1759 NC_012791.1 1894033 1894353 R PFAM: small multidrug resistance protein; KEGG: ccr:CC_3443 SugE protein; small multidrug resistance protein complement(1894033..1894353) Variovorax paradoxus S110 7974501 YP_002943676.1 CDS Vapar_1760 NC_012791.1 1894373 1895503 R PFAM: HPP family protein; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: aav:Aave_0890 CBS domain-containing protein; CBS domain containing membrane protein complement(1894373..1895503) Variovorax paradoxus S110 7974502 YP_002943677.1 CDS Vapar_1761 NC_012791.1 1895519 1896754 R TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0389 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(1895519..1896754) Variovorax paradoxus S110 7974503 YP_002943678.1 CDS Vapar_1762 NC_012791.1 1896855 1899119 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: aav:Aave_1406 RpoD family RNA polymerase sigma factor; RNA polymerase sigma-70 subunit RpoD complement(1896855..1899119) Variovorax paradoxus S110 7974504 YP_002943679.1 CDS Vapar_1763 NC_012791.1 1899503 1901482 R KEGG: rfr:Rfer_2203 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; DNA primase catalytic core domain; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; DNA primase complement(1899503..1901482) Variovorax paradoxus S110 7974505 YP_002943680.1 CDS Vapar_1764 NC_012791.1 1901565 1902506 D TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: rfr:Rfer_2419 ribonuclease BN; ribonuclease BN 1901565..1902506 Variovorax paradoxus S110 7974506 YP_002943681.1 CDS Vapar_1765 NC_012791.1 1902454 1903212 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_1606 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1902454..1903212) Variovorax paradoxus S110 7974507 YP_002943682.1 CDS Vapar_1766 NC_012791.1 1903341 1903892 R TIGRFAM: phasin family protein; KEGG: dia:Dtpsy_1366 phasin family protein; phasin family protein complement(1903341..1903892) Variovorax paradoxus S110 7974508 YP_002943683.1 CDS Vapar_1767 NC_012791.1 1903952 1904053 D hypothetical protein 1903952..1904053 Variovorax paradoxus S110 7974509 YP_002943684.1 CDS Vapar_1768 NC_012791.1 1904073 1905008 D PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3087 histone deacetylase superfamily; histone deacetylase 1904073..1905008 Variovorax paradoxus S110 7974510 YP_002943685.1 CDS Vapar_1769 NC_012791.1 1905005 1905448 D PFAM: thioesterase superfamily protein; KEGG: vei:Veis_2066 thioesterase superfamily protein; thioesterase superfamily protein 1905005..1905448 Variovorax paradoxus S110 7974511 YP_002943686.1 CDS Vapar_1770 NC_012791.1 1905509 1905925 R KEGG: ajs:Ajs_0255 hypothetical protein; hypothetical protein complement(1905509..1905925) Variovorax paradoxus S110 7974512 YP_002943687.1 CDS Vapar_1771 NC_012791.1 1905964 1906197 R PFAM: CsbD family protein; KEGG: efe:EFER_4136 stress response protein; CsbD family protein complement(1905964..1906197) Variovorax paradoxus S110 7974513 YP_002943688.1 CDS Vapar_1772 NC_012791.1 1906374 1907594 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1906374..1907594 Variovorax paradoxus S110 7974514 YP_002943689.1 CDS Vapar_1773 NC_012791.1 1907621 1909033 D KEGG: pol:Bpro_3079 transmembrane protein; transmembrane protein 1907621..1909033 Variovorax paradoxus S110 7974515 YP_002943690.1 CDS Vapar_1774 NC_012791.1 1909045 1910031 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: pna:Pnap_1622 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 1909045..1910031 Variovorax paradoxus S110 7974516 YP_002943691.1 CDS Vapar_1775 NC_012791.1 1910057 1911424 D PFAM: protein of unknown function DUF195; KEGG: rfr:Rfer_2166 hypothetical protein; hypothetical protein 1910057..1911424 Variovorax paradoxus S110 7974517 YP_002943692.1 CDS Vapar_1776 NC_012791.1 1911421 1912584 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3076 major facilitator superfamily MFS_1; major facilitator superfamily protein 1911421..1912584 Variovorax paradoxus S110 7974518 YP_002943693.1 CDS Vapar_1777 NC_012791.1 1912631 1913524 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3075 conserved hypothetical protein 730; hypothetical protein complement(1912631..1913524) Variovorax paradoxus S110 7974519 YP_002943694.1 CDS Vapar_1778 NC_012791.1 1913557 1914336 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1913557..1914336) Variovorax paradoxus S110 7974520 YP_002943695.1 CDS Vapar_1779 NC_012791.1 1914423 1914977 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1914423..1914977) Variovorax paradoxus S110 7974521 YP_002943696.1 CDS Vapar_1780 NC_012791.1 1915168 1916331 R KEGG: pna:Pnap_1626 hypothetical protein; hypothetical protein complement(1915168..1916331) Variovorax paradoxus S110 7974522 YP_002943697.1 CDS Vapar_1781 NC_012791.1 1916355 1917812 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rme:Rmet_3665 hypothetical protein; hypothetical protein 1916355..1917812 Variovorax paradoxus S110 7974523 YP_002943698.1 CDS Vapar_1782 NC_012791.1 1917848 1919938 R PFAM: gamma-glutamyltranspeptidase; KEGG: aav:Aave_3307 gamma-glutamyltransferase 1; Gamma-glutamyltransferase complement(1917848..1919938) Variovorax paradoxus S110 7974524 YP_002943699.1 CDS uvrC NC_012791.1 1920044 1922005 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1920044..1922005 Variovorax paradoxus S110 7974525 YP_002943700.1 CDS Vapar_1784 NC_012791.1 1922061 1922627 D KEGG: dia:Dtpsy_1186 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1922061..1922627 Variovorax paradoxus S110 7974526 YP_002943701.1 CDS Vapar_1785 NC_012791.1 1922624 1923508 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: rfr:Rfer_2246 hypothetical protein; hypothetical protein 1922624..1923508 Variovorax paradoxus S110 7974527 YP_002943702.1 CDS Vapar_1786 NC_012791.1 1923527 1924474 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_3068 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1923527..1924474) Variovorax paradoxus S110 7974528 YP_002943703.1 CDS Vapar_1787 NC_012791.1 1924560 1925474 D PFAM: alpha/beta hydrolase fold; KEGG: pna:Pnap_1631 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1924560..1925474 Variovorax paradoxus S110 7974529 YP_002943704.1 CDS Vapar_1788 NC_012791.1 1925471 1926556 D KEGG: pol:Bpro_3066 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1925471..1926556 Variovorax paradoxus S110 7970803 YP_002943705.1 CDS Vapar_1789 NC_012791.1 1926772 1927044 D PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: pol:Bpro_3065 bacterial nucleoid protein Hbs; histone family protein DNA-binding protein 1926772..1927044 Variovorax paradoxus S110 7970804 YP_002943706.1 CDS Vapar_1790 NC_012791.1 1927227 1929137 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_3064 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1927227..1929137 Variovorax paradoxus S110 7970806 YP_002943707.1 CDS Vapar_1791 NC_012791.1 1929249 1929923 D PFAM: phosphoglycerate mutase; KEGG: rfr:Rfer_3732 phosphoglycerate mutase; phosphoglycerate mutase 1929249..1929923 Variovorax paradoxus S110 7970807 YP_002943708.1 CDS Vapar_1792 NC_012791.1 1929945 1930277 R KEGG: pol:Bpro_4530 hypothetical protein; hypothetical protein complement(1929945..1930277) Variovorax paradoxus S110 7970808 YP_002943709.1 CDS Vapar_1793 NC_012791.1 1930299 1930547 R PFAM: transglycosylase-associated protein; KEGG: bpy:Bphyt_4202 transglycosylase-associated protein; transglycosylase-associated protein complement(1930299..1930547) Variovorax paradoxus S110 7970809 YP_002943710.1 CDS Vapar_1794 NC_012791.1 1930764 1931396 D PFAM: PEBP family protein; KEGG: mrd:Mrad2831_0133 PEBP family protein; PEBP family protein 1930764..1931396 Variovorax paradoxus S110 7970810 YP_002943711.1 CDS Vapar_1795 NC_012791.1 1931812 1932156 D PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: reu:Reut_B5596 nucleoid protein H-NS; histone family protein nucleoid-structuring protein H-NS 1931812..1932156 Variovorax paradoxus S110 7970812 YP_002943712.1 CDS Vapar_1796 NC_012791.1 1932242 1933228 R PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_3062 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase zinc-binding domain-containing protein complement(1932242..1933228) Variovorax paradoxus S110 7970813 YP_002943713.1 CDS surE NC_012791.1 1933356 1934114 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1933356..1934114 Variovorax paradoxus S110 7970814 YP_002943714.1 CDS Vapar_1798 NC_012791.1 1934117 1934890 D KEGG: aav:Aave_1415 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1934117..1934890 Variovorax paradoxus S110 7970815 YP_002943715.1 CDS Vapar_1799 NC_012791.1 1934902 1935798 D PFAM: peptidase M23; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: pol:Bpro_3059 peptidase M23B; peptidase M23 1934902..1935798 Variovorax paradoxus S110 7970816 YP_002943716.1 CDS Vapar_1800 NC_012791.1 1935803 1936798 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: rfr:Rfer_2779 sigma-70 region 2; RNA polymerase, sigma 70 family subunit 1935803..1936798 Variovorax paradoxus S110 7970817 YP_002943717.1 CDS rumA NC_012791.1 1936853 1938301 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1936853..1938301 Variovorax paradoxus S110 7970818 YP_002943718.1 CDS Vapar_1802 NC_012791.1 1938362 1939063 R PFAM: protein of unknown function UPF0005; KEGG: aav:Aave_3316 hypothetical protein; hypothetical protein complement(1938362..1939063) Variovorax paradoxus S110 7970819 YP_002943719.1 CDS Vapar_1803 NC_012791.1 1939228 1939635 D PFAM: protein of unknown function DUF336; KEGG: rfr:Rfer_2775 hypothetical protein; hypothetical protein 1939228..1939635 Variovorax paradoxus S110 7970820 YP_002943720.1 CDS Vapar_1804 NC_012791.1 1939811 1940023 R KEGG: aav:Aave_3314 hypothetical protein; hypothetical protein complement(1939811..1940023) Variovorax paradoxus S110 7970821 YP_002943721.1 CDS Vapar_1805 NC_012791.1 1940119 1940532 R PFAM: biopolymertransporter ExbD/TolR; KEGG: aav:Aave_3313 biopolymer transport protein ExbD/TolR; biopolymertransporter ExbD/TolR complement(1940119..1940532) Variovorax paradoxus S110 7970822 YP_002943722.1 CDS Vapar_1806 NC_012791.1 1940537 1941253 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_3052 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(1940537..1941253) Variovorax paradoxus S110 7970823 YP_002943723.1 CDS Vapar_1807 NC_012791.1 1941276 1941977 R TIGRFAM: TonB family protein; KEGG: aav:Aave_3311 TonB family protein; TonB family protein complement(1941276..1941977) Variovorax paradoxus S110 7970824 YP_002943724.1 CDS Vapar_1808 NC_012791.1 1942712 1944931 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pol:Bpro_3047 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1942712..1944931 Variovorax paradoxus S110 7970825 YP_002943725.1 CDS Vapar_1809 NC_012791.1 1944951 1945637 D PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase subunit alpha; KEGG: lch:Lcho_1570 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 1944951..1945637 Variovorax paradoxus S110 7970826 YP_002943726.1 CDS Vapar_1810 NC_012791.1 1945675 1945974 D KEGG: dia:Dtpsy_0527 signal peptide protein; hypothetical protein 1945675..1945974 Variovorax paradoxus S110 7970827 YP_002943727.1 CDS Vapar_1811 NC_012791.1 1945986 1946540 D PFAM: cytochrome B561; KEGG: ajs:Ajs_0510 cytochrome b561; cytochrome B561 1945986..1946540 Variovorax paradoxus S110 7970828 YP_002943728.1 CDS Vapar_1812 NC_012791.1 1946568 1947044 R TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pol:Bpro_3046 bacterioferritin; bacterioferritin complement(1946568..1947044) Variovorax paradoxus S110 7970829 YP_002943729.1 CDS Vapar_1813 NC_012791.1 1947307 1947870 D KEGG: mms:mma_0039 alkyl hydroperoxide reductase subunit C; TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; peroxiredoxin 1947307..1947870 Variovorax paradoxus S110 7970830 YP_002943730.1 CDS Vapar_1814 NC_012791.1 1947960 1949531 D TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin; KEGG: pol:Bpro_3045 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; alkyl hydroperoxide reductase subunit F 1947960..1949531 Variovorax paradoxus S110 7970831 YP_002943731.1 CDS Vapar_1815 NC_012791.1 1949525 1950346 R PFAM: protein of unknown function DUF299; KEGG: dia:Dtpsy_2367 protein of unknown function DUF299; hypothetical protein complement(1949525..1950346) Variovorax paradoxus S110 7970832 YP_002943732.1 CDS Vapar_1816 NC_012791.1 1950537 1952930 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1950537..1952930 Variovorax paradoxus S110 7970833 YP_002943733.1 CDS Vapar_1817 NC_012791.1 1953127 1953645 D KEGG: dia:Dtpsy_2363 hypothetical protein; hypothetical protein 1953127..1953645 Variovorax paradoxus S110 7970834 YP_002943734.1 CDS rpsF NC_012791.1 1953761 1954135 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1953761..1954135 Variovorax paradoxus S110 7970835 YP_002943735.1 CDS Vapar_1819 NC_012791.1 1954182 1954457 D KEGG: rfr:Rfer_2194 primosomal replication protein; primosomal replication protein 1954182..1954457 Variovorax paradoxus S110 7970836 YP_002943736.1 CDS rpsR NC_012791.1 1954479 1954760 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1954479..1954760 Variovorax paradoxus S110 7970837 YP_002943737.1 CDS rplI NC_012791.1 1954776 1955228 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1954776..1955228 Variovorax paradoxus S110 7970838 YP_002943738.1 CDS Vapar_1822 NC_012791.1 1955399 1956808 D KEGG: pna:Pnap_2391 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: ATPase AAA; replicative DNA helicase 1955399..1956808 Variovorax paradoxus S110 7970839 YP_002943739.1 CDS Vapar_1823 NC_012791.1 1956822 1957535 R PFAM: hypothetical protein; KEGG: dia:Dtpsy_0190 helix-turn-helix type 11 domain protein; hypothetical protein complement(1956822..1957535) Variovorax paradoxus S110 7970840 YP_002943740.1 CDS Vapar_1824 NC_012791.1 1957591 1958058 R PFAM: transcription activator effector binding; KEGG: dia:Dtpsy_0189 transcription activator effector binding; transcription activator effector binding complement(1957591..1958058) Variovorax paradoxus S110 7970841 YP_002943741.1 CDS Vapar_1825 NC_012791.1 1958086 1958535 R PFAM: protein of unknown function DUF55; KEGG: rlt:Rleg2_5979 protein of unknown function DUF55; hypothetical protein complement(1958086..1958535) Variovorax paradoxus S110 7970842 YP_002943742.1 CDS Vapar_1826 NC_012791.1 1958544 1958915 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_0170 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1958544..1958915) Variovorax paradoxus S110 7970843 YP_002943743.1 CDS Vapar_1827 NC_012791.1 1959071 1960858 R PFAM: PhoH family protein; SMART: nucleotide binding protein PINc; KEGG: pol:Bpro_2186 PhoH-like protein; PhoH family protein complement(1959071..1960858) Variovorax paradoxus S110 7970844 YP_002943744.1 CDS Vapar_1828 NC_012791.1 1961070 1961546 R PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: pol:Bpro_2187 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(1961070..1961546) Variovorax paradoxus S110 7970845 YP_002943745.1 CDS Vapar_1829 NC_012791.1 1961680 1962060 R PFAM: protein of unknown function DUF498; KEGG: aav:Aave_1236 hypothetical protein; hypothetical protein complement(1961680..1962060) Variovorax paradoxus S110 7970846 YP_002943746.1 CDS Vapar_1830 NC_012791.1 1962164 1963393 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 1962164..1963393 Variovorax paradoxus S110 7970847 YP_002943747.1 CDS Vapar_1831 NC_012791.1 1963482 1964804 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1963482..1964804 Variovorax paradoxus S110 7970848 YP_002943748.1 CDS Vapar_1832 NC_012791.1 1964826 1966241 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1964826..1966241 Variovorax paradoxus S110 7970849 YP_002943749.1 CDS Vapar_1833 NC_012791.1 1966325 1966870 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: pol:Bpro_2192 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein B 1966325..1966870 Variovorax paradoxus S110 7970850 YP_002943750.1 CDS Vapar_1834 NC_012791.1 1966899 1968140 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: ajs:Ajs_3203 molybdenum cofactor synthesis domain-containing protein; molybdenum cofactor synthesis domain-containing protein 1966899..1968140 Variovorax paradoxus S110 7970851 YP_002943751.1 CDS Vapar_1835 NC_012791.1 1968153 1968404 D TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rfr:Rfer_1916 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 1968153..1968404 Variovorax paradoxus S110 7970852 YP_002943752.1 CDS Vapar_1836 NC_012791.1 1968391 1969386 R PFAM: dihydrodipicolinate synthetase; KEGG: pol:Bpro_2195 dihydrodipicolinate synthase; dihydrodipicolinate synthetase complement(1968391..1969386) Variovorax paradoxus S110 7970853 YP_002943753.1 CDS Vapar_1837 NC_012791.1 1969540 1970016 D PFAM: molybdopterin biosynthesis MoaE protein; KEGG: pna:Pnap_2226 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE protein 1969540..1970016 Variovorax paradoxus S110 7970854 YP_002943754.1 CDS Vapar_1838 NC_012791.1 1970017 1971009 R PFAM: conserved hypothetical protein; KEGG: rfr:Rfer_3194 hypothetical protein; hypothetical protein complement(1970017..1971009) Variovorax paradoxus S110 7970855 YP_002943755.1 CDS Vapar_1839 NC_012791.1 1971150 1973771 D KEGG: pol:Bpro_2201 ATPase AAA-2; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; ATP-dependent chaperone ClpB 1971150..1973771 Variovorax paradoxus S110 7970856 YP_002943756.1 CDS Vapar_1840 NC_012791.1 1973778 1974122 D KEGG: aav:Aave_1250 hypothetical protein; hypothetical protein 1973778..1974122 Variovorax paradoxus S110 7970857 YP_002943757.1 CDS Vapar_1841 NC_012791.1 1974244 1975428 D catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 1974244..1975428 Variovorax paradoxus S110 7970858 YP_002943758.1 CDS Vapar_1842 NC_012791.1 1975445 1975852 D PFAM: class I peptide chain release factor; KEGG: pol:Bpro_1858 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 1975445..1975852 Variovorax paradoxus S110 7970859 YP_002943759.1 CDS Vapar_1843 NC_012791.1 1975913 1976491 D KEGG: lch:Lcho_3556 hypothetical protein; hypothetical protein 1975913..1976491 Variovorax paradoxus S110 7970860 YP_002943760.1 CDS Vapar_1844 NC_012791.1 1976497 1978242 R PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; KEGG: vei:Veis_3287 sulfate transporter; sulfate transporter complement(1976497..1978242) Variovorax paradoxus S110 7970861 YP_002943761.1 CDS Vapar_1845 NC_012791.1 1978331 1978807 R KEGG: dac:Daci_1239 hypothetical protein; hypothetical protein complement(1978331..1978807) Variovorax paradoxus S110 7970862 YP_002943762.1 CDS Vapar_1846 NC_012791.1 1978829 1980040 R PFAM: beta-ketoacyl synthase; KEGG: dar:Daro_1172 beta-ketoacyl synthase; beta-ketoacyl synthase complement(1978829..1980040) Variovorax paradoxus S110 7970863 YP_002943763.1 CDS Vapar_1847 NC_012791.1 1980037 1980279 R PFAM: phosphopantetheine-binding; KEGG: dar:Daro_1173 phosphopantetheine-binding; phosphopantetheine-binding complement(1980037..1980279) Variovorax paradoxus S110 7970864 YP_002943764.1 CDS Vapar_1848 NC_012791.1 1980373 1981089 R KEGG: pol:Bpro_3303 phosphoesterase, PA-phosphatase related; phosphoesterase, PA-phosphatase related complement(1980373..1981089) Variovorax paradoxus S110 7970865 YP_002943765.1 CDS Vapar_1849 NC_012791.1 1981177 1982019 R PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mpt:Mpe_A1555 AraC family transcriptional regulator; AraC family transcriptional regulator complement(1981177..1982019) Variovorax paradoxus S110 7970866 YP_002943766.1 CDS Vapar_1850 NC_012791.1 1982108 1983361 D PFAM: major facilitator superfamily MFS_1; KEGG: pna:Pnap_2216 major facilitator superfamily transporter; major facilitator superfamily protein 1982108..1983361 Variovorax paradoxus S110 7970867 YP_002943767.1 CDS Vapar_1851 NC_012791.1 1983405 1983845 D KEGG: pen:PSEEN2125 hypothetical protein; hypothetical protein 1983405..1983845 Variovorax paradoxus S110 7970868 YP_002943768.1 CDS Vapar_1852 NC_012791.1 1983865 1984248 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: nha:Nham_4429 arsenate reductase; arsenate reductase complement(1983865..1984248) Variovorax paradoxus S110 7970869 YP_002943769.1 CDS Vapar_1853 NC_012791.1 1984259 1984942 R PFAM: glutathione S-transferase domain; KEGG: cak:Caul_4710 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein complement(1984259..1984942) Variovorax paradoxus S110 7970870 YP_002943770.1 CDS Vapar_1854 NC_012791.1 1984975 1985490 R PFAM: 67-dimethyl-8-ribityllumazine synthase; KEGG: har:HEAR2090 riboflavin synthase subunit beta; Riboflavin synthase complement(1984975..1985490) Variovorax paradoxus S110 7970871 YP_002943771.1 CDS Vapar_1855 NC_012791.1 1985874 1986971 R PFAM: protein of unknown function DUF1006; KEGG: dac:Daci_2290 hypothetical protein; hypothetical protein complement(1985874..1986971) Variovorax paradoxus S110 7970872 YP_002943772.1 CDS Vapar_1856 NC_012791.1 1987301 1988179 R PFAM: xylose isomerase; KEGG: vei:Veis_0615 xylose isomerase domain-containing protein; xylose isomerase complement(1987301..1988179) Variovorax paradoxus S110 7970873 YP_002943773.1 CDS Vapar_1857 NC_012791.1 1988188 1989375 R PFAM: protein of unknown function DUF993; KEGG: azc:AZC_2347 hypothetical protein; hypothetical protein complement(1988188..1989375) Variovorax paradoxus S110 7970874 YP_002943774.1 CDS Vapar_1858 NC_012791.1 1989392 1990555 R PFAM: oxidoreductase domain protein; KEGG: vei:Veis_0616 oxidoreductase domain-containing protein; oxidoreductase domain-containing protein complement(1989392..1990555) Variovorax paradoxus S110 7970875 YP_002943775.1 CDS Vapar_1859 NC_012791.1 1990588 1992018 R KEGG: vei:Veis_0617 hypothetical protein; hypothetical protein complement(1990588..1992018) Variovorax paradoxus S110 7970876 YP_002943776.1 CDS Vapar_1860 NC_012791.1 1992028 1992807 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_0618 ABC transporter; ABC transporter complement(1992028..1992807) Variovorax paradoxus S110 7970877 YP_002943777.1 CDS Vapar_1861 NC_012791.1 1992855 1993874 R PFAM: NMT1/THI5 like domain protein; KEGG: vei:Veis_0619 sulfonate/nitrate transport system substrate-binding protein; NMT1/THI5 like domain-containing protein complement(1992855..1993874) Variovorax paradoxus S110 7970878 YP_002943778.1 CDS Vapar_1862 NC_012791.1 1993919 1994692 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0620 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(1993919..1994692) Variovorax paradoxus S110 7970879 YP_002943779.1 CDS Vapar_1863 NC_012791.1 1994726 1995709 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_0621 hypothetical protein; hypothetical protein complement(1994726..1995709) Variovorax paradoxus S110 7970880 YP_002943780.1 CDS Vapar_1864 NC_012791.1 1995867 1996523 R PFAM: regulatory protein TetR; KEGG: vei:Veis_0622 TetR family transcriptional regulator; TetR family transcriptional regulator complement(1995867..1996523) Variovorax paradoxus S110 7970881 YP_002943781.1 CDS Vapar_1865 NC_012791.1 1996617 1998335 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pna:Pnap_2213 fis family transcriptional regulator; thiamine pyrophosphate TPP binding domain-containing protein 1996617..1998335 Variovorax paradoxus S110 7970882 YP_002943782.1 CDS Vapar_1866 NC_012791.1 1998424 1998867 R PFAM: SWIB/MDM2 domain protein; SMART: SWIB/MDM2 domain protein; KEGG: pol:Bpro_2811 SWIB complex, BAF60b; SWIB/MDM2 domain-containing protein complement(1998424..1998867) Variovorax paradoxus S110 7970883 YP_002943783.1 CDS Vapar_1867 NC_012791.1 1999023 1999949 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: rfr:Rfer_1956 hypothetical protein; hypothetical protein complement(1999023..1999949) Variovorax paradoxus S110 7971618 YP_002943784.1 CDS Vapar_1868 NC_012791.1 1999989 2000417 D PFAM: AIG2 family protein; KEGG: aav:Aave_2861 hypothetical protein; AIG2 family protein 1999989..2000417 Variovorax paradoxus S110 7971046 YP_002943785.1 CDS Vapar_1869 NC_012791.1 2000665 2001984 D TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: pol:Bpro_2101 isocitrate lyase; isocitrate lyase 2000665..2001984 Variovorax paradoxus S110 7971047 YP_002943786.1 CDS thrS NC_012791.1 2002279 2004186 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2002279..2004186 Variovorax paradoxus S110 7971048 YP_002943787.1 CDS Vapar_1871 NC_012791.1 2004366 2004911 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: pol:Bpro_2103 bacterial translation initiation factor 3 (bIF-3); translation initiation factor IF-3 2004366..2004911 Variovorax paradoxus S110 7971049 YP_002943788.1 CDS Vapar_1872 NC_012791.1 2005082 2005285 D TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pol:Bpro_2104 50S ribosomal protein L35P; 50S ribosomal protein L35 2005082..2005285 Variovorax paradoxus S110 7971050 YP_002943789.1 CDS rplT NC_012791.1 2005310 2005669 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2005310..2005669 Variovorax paradoxus S110 7971051 YP_002943790.1 CDS Vapar_1874 NC_012791.1 2005783 2006859 D KEGG: dia:Dtpsy_1452 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; phenylalanyl-tRNA synthetase subunit alpha 2005783..2006859 Variovorax paradoxus S110 7971052 YP_002943791.1 CDS pheT NC_012791.1 2006902 2009343 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2006902..2009343 Variovorax paradoxus S110 7971053 YP_002943792.1 CDS Vapar_1876 NC_012791.1 2009349 2009720 D PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: pol:Bpro_2108 integration host factor, subunit alpha; histone family protein DNA-binding protein 2009349..2009720 Variovorax paradoxus S110 7971054 YP_002943793.1 CDS Vapar_1877 NC_012791.1 2009786 2010265 D PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: pol:Bpro_2109 MerR family transcriptional regulator; MerR family transcriptional regulator 2009786..2010265 Variovorax paradoxus S110 7971055 YP_002943794.1 CDS Vapar_1878 NC_012791.1 2010673 2010885 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: hne:HNE_2543 DNA-binding protein; XRE family transcriptional regulator complement(2010673..2010885) Variovorax paradoxus S110 7971057 YP_002943795.1 CDS Vapar_1879 NC_012791.1 2011180 2011728 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: azc:AZC_1503 transcriptional regulator; XRE family transcriptional regulator 2011180..2011728 Variovorax paradoxus S110 7971058 YP_002943796.1 CDS Vapar_1880 NC_012791.1 2011865 2012317 D KEGG: rpe:RPE_1031 hypothetical protein; hypothetical protein 2011865..2012317 Variovorax paradoxus S110 7971059 YP_002943797.1 CDS Vapar_1881 NC_012791.1 2012347 2013315 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_5776 hypothetical protein; hypothetical protein complement(2012347..2013315) Variovorax paradoxus S110 7971060 YP_002943798.1 CDS Vapar_1882 NC_012791.1 2013499 2015718 D PFAM: rhodanese domainprotein; SMART: Rhodanese domain protein; KEGG: cti:RALTA_B1912 conserved hypothetical protein; 4 rhodanese-like domains; contains extra N_term COG5553 domain (modular protein); rhodanese domain-containing protein 2013499..2015718 Variovorax paradoxus S110 7971061 YP_002943799.1 CDS Vapar_1883 NC_012791.1 2015736 2016683 R TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_1409 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(2015736..2016683) Variovorax paradoxus S110 7971062 YP_002943800.1 CDS Vapar_1884 NC_012791.1 2016808 2018013 R KEGG: dac:Daci_5774 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; cystathionine beta-lyase complement(2016808..2018013) Variovorax paradoxus S110 7971063 YP_002943801.1 CDS Vapar_1885 NC_012791.1 2018010 2018648 R PFAM: cysteine dioxygenase type I; KEGG: cti:RALTA_B1908 hypothetical protein; cysteine dioxygenase type I complement(2018010..2018648) Variovorax paradoxus S110 7971064 YP_002943802.1 CDS Vapar_1886 NC_012791.1 2018670 2019530 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dac:Daci_5772 ABC transporter; ABC transporter complement(2018670..2019530) Variovorax paradoxus S110 7971065 YP_002943803.1 CDS Vapar_1887 NC_012791.1 2019517 2020338 R TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_5771 polar amino acid ABC transporter inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(2019517..2020338) Variovorax paradoxus S110 7971066 YP_002943804.1 CDS Vapar_1889 NC_012791.1 2021082 2021888 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: cti:RALTA_B1904 high affinity periplasmic solute-binding protein; high affinity transport system; family 3 extracellular solute-binding protein complement(2021082..2021888) Variovorax paradoxus S110 7971068 YP_002943805.1 CDS Vapar_1890 NC_012791.1 2022185 2022670 D SMART: rhodanese domainprotein; KEGG: dac:Daci_5788 rhodanese domain-containing protein; rhodanese domain-containing protein 2022185..2022670 Variovorax paradoxus S110 7971069 YP_002943806.1 CDS Vapar_1891 NC_012791.1 2022711 2023625 D PFAM: transferase hexapeptide repeat containing protein; KEGG: pna:Pnap_0539 serine O-acetyltransferase; serine O-acetyltransferase 2022711..2023625 Variovorax paradoxus S110 7971070 YP_002943807.1 CDS Vapar_1892 NC_012791.1 2023622 2023891 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mms:mma_2537 hypothetical protein; XRE family transcriptional regulator 2023622..2023891 Variovorax paradoxus S110 7971071 YP_002943808.1 CDS Vapar_1893 NC_012791.1 2023951 2024883 D KEGG: dac:Daci_5791 major membrane protein I; major membrane protein I 2023951..2024883 Variovorax paradoxus S110 7971072 YP_002943809.1 CDS Vapar_1894 NC_012791.1 2024950 2026842 D TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mms:mma_2535 selenocysteine lyase; SufS subfamily cysteine desulfurase 2024950..2026842 Variovorax paradoxus S110 7971073 YP_002943810.1 CDS Vapar_1895 NC_012791.1 2026970 2028592 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; HI0933 family protein; KEGG: scl:sce3038 L-aspartate oxidase (LASPO); fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2026970..2028592 Variovorax paradoxus S110 7971074 YP_002943811.1 CDS Vapar_1896 NC_012791.1 2028589 2028918 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: scl:sce3039 hypothetical protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2028589..2028918 Variovorax paradoxus S110 7971075 YP_002943812.1 CDS Vapar_1897 NC_012791.1 2028956 2029927 D KEGG: pna:Pnap_2420 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein; aliphatic sulfonate ABC transporter periplasmic ligand-binding protein 2028956..2029927 Variovorax paradoxus S110 7971076 YP_002943813.1 CDS Vapar_1898 NC_012791.1 2029940 2030812 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ara:Arad_9295 amino acid ABC transporter; family 3 extracellular solute-binding protein complement(2029940..2030812) Variovorax paradoxus S110 7971077 YP_002943814.1 CDS Vapar_1899 NC_012791.1 2030805 2031632 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_1369 ABC transporter membrane protein; binding-protein-dependent transport systems inner membrane component complement(2030805..2031632) Variovorax paradoxus S110 7971078 YP_002943815.1 CDS Vapar_1900 NC_012791.1 2031629 2032438 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: scl:sce4768 ABC-type transporter ATP-binding protein; ABC transporter complement(2031629..2032438) Variovorax paradoxus S110 7971079 YP_002943816.1 CDS Vapar_1901 NC_012791.1 2032452 2033513 R PFAM: NMT1/THI5 like domain protein; KEGG: scl:sce4103 ABC transporter periplasmic substrate-binding protein; NMT1/THI5 like domain-containing protein complement(2032452..2033513) Variovorax paradoxus S110 7971080 YP_002943817.1 CDS Vapar_1902 NC_012791.1 2033702 2034280 D PFAM: NADPH-dependent FMN reductase; KEGG: aav:Aave_0879 NADPH-dependent FMN reductase; FMN reductase 2033702..2034280 Variovorax paradoxus S110 7971081 YP_002943818.1 CDS Vapar_1903 NC_012791.1 2034292 2035545 D PFAM: acyl-CoA dehydrogenase type 2 domain; acyl-CoA dehydrogenase domain protein; KEGG: bxe:Bxe_B1545 hypothetical protein; acyl-CoA dehydrogenase type 2 domain-containing protein 2034292..2035545 Variovorax paradoxus S110 7971082 YP_002943819.1 CDS Vapar_1905 NC_012791.1 2036880 2037740 D TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bxe:Bxe_A4158 ABC transporter periplasmic ligand-binding protein; lipoprotein, YaeC family 2036880..2037740 Variovorax paradoxus S110 7971084 YP_002943820.1 CDS Vapar_1906 NC_012791.1 2037742 2039115 D KEGG: bxe:Bxe_B1543 DszA family monooxygenase; DszA family monooxygenase 2037742..2039115 Variovorax paradoxus S110 7971085 YP_002943821.1 CDS Vapar_1907 NC_012791.1 2039116 2040336 R PFAM: acyl-CoA dehydrogenase type 2 domain; KEGG: cti:RALTA_B1391 acyl-CoA dehydrogenase, DBT sulfur dioxygenase; acyl-CoA dehydrogenase type 2 domain-containing protein complement(2039116..2040336) Variovorax paradoxus S110 7971086 YP_002943822.1 CDS Vapar_1908 NC_012791.1 2040372 2041736 R KEGG: bpy:Bphyt_2100 xenobiotic (desulfurization)monooxygenase subunit A, NtaA/SnaA/SoxA/DszA family; xenobiotic (desulfurization)monooxygenase subunit A complement(2040372..2041736) Variovorax paradoxus S110 7971087 YP_002943823.1 CDS Vapar_1909 NC_012791.1 2041778 2042638 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bxe:Bxe_A2157 sulfate ester ABC transporter ATPase; ABC transporter complement(2041778..2042638) Variovorax paradoxus S110 7971088 YP_002943824.1 CDS Vapar_1910 NC_012791.1 2042668 2043480 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A2158 sulfate ester ABC transporter inner membrane protein; binding-protein-dependent transport systems inner membrane component complement(2042668..2043480) Variovorax paradoxus S110 7971089 YP_002943825.1 CDS Vapar_1911 NC_012791.1 2043477 2044325 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_B2062 nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein; binding-protein-dependent transport systems inner membrane component complement(2043477..2044325) Variovorax paradoxus S110 7971090 YP_002943826.1 CDS Vapar_1912 NC_012791.1 2044462 2045565 R KEGG: bpy:Bphyt_2096 ABC sulfate ester transporter periplasmic ligand binding protein; ABC sulfate ester transporter periplasmic ligand binding protein complement(2044462..2045565) Variovorax paradoxus S110 7971091 YP_002943827.1 CDS Vapar_1913 NC_012791.1 2045562 2047079 R PFAM: amidohydrolase 2; KEGG: scl:sce3373 hypothetical protein; amidohydrolase 2 complement(2045562..2047079) Variovorax paradoxus S110 7971092 YP_002943828.1 CDS Vapar_1914 NC_012791.1 2047244 2048794 R KEGG: pna:Pnap_4046 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(2047244..2048794) Variovorax paradoxus S110 7971093 YP_002943829.1 CDS Vapar_1915 NC_012791.1 2048869 2049765 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rle:RL0307 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2048869..2049765) Variovorax paradoxus S110 7971094 YP_002943830.1 CDS Vapar_1916 NC_012791.1 2049893 2050546 D PFAM: isochorismatase hydrolase; KEGG: sme:SMa2029 amidohydrolase; isochorismatase hydrolase 2049893..2050546 Variovorax paradoxus S110 7971095 YP_002943831.1 CDS Vapar_1918 NC_012791.1 2051467 2052063 R KEGG: dia:Dtpsy_1329 hypothetical protein; hypothetical protein complement(2051467..2052063) Variovorax paradoxus S110 7971097 YP_002943832.1 CDS Vapar_1919 NC_012791.1 2052316 2052789 R hypothetical protein complement(2052316..2052789) Variovorax paradoxus S110 7971098 YP_002943833.1 CDS Vapar_1920 NC_012791.1 2052923 2053951 R PFAM: Spore coat U domain protein; KEGG: ara:Arad_7724 hypothetical protein; Spore coat U domain-containing protein complement(2052923..2053951) Variovorax paradoxus S110 7971099 YP_002943834.1 CDS Vapar_1921 NC_012791.1 2053948 2056275 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pcr:Pcryo_1831 fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein complement(2053948..2056275) Variovorax paradoxus S110 7971100 YP_002943835.1 CDS Vapar_1922 NC_012791.1 2056310 2057038 R KEGG: pcr:Pcryo_1830 P pilus assembly protein chaperone PapD-like; P pilus assembly protein chaperone PapD-like protein complement(2056310..2057038) Variovorax paradoxus S110 7971101 YP_002943836.1 CDS Vapar_1923 NC_012791.1 2057064 2057570 R PFAM: Spore coat U domain protein; fimbrial protein; KEGG: pcr:Pcryo_1832 hypothetical protein; Spore coat U domain-containing protein complement(2057064..2057570) Variovorax paradoxus S110 7971102 YP_002943837.1 CDS Vapar_1924 NC_012791.1 2058176 2058274 R hypothetical protein complement(2058176..2058274) Variovorax paradoxus S110 7971103 YP_002943838.1 CDS Vapar_1925 NC_012791.1 2058726 2059844 D PFAM: polysaccharide export protein; KEGG: bac:BamMC406_1118 polysaccharide export protein; polysaccharide export protein 2058726..2059844 Variovorax paradoxus S110 7971104 YP_002943839.1 CDS Vapar_1926 NC_012791.1 2060002 2061297 D TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: ajs:Ajs_3014 UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 2060002..2061297 Variovorax paradoxus S110 7971105 YP_002943840.1 CDS Vapar_1927 NC_012791.1 2061314 2062261 D PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: ajs:Ajs_3015 oxidoreductase domain-containing protein; oxidoreductase domain-containing protein 2061314..2062261 Variovorax paradoxus S110 7971106 YP_002943841.1 CDS Vapar_1928 NC_012791.1 2062273 2062863 D PFAM: transferase hexapeptide repeat containing protein; KEGG: sse:Ssed_2971 acetyltransferase; transferase hexapeptide repeat containing protein 2062273..2062863 Variovorax paradoxus S110 7971107 YP_002943842.1 CDS Vapar_1929 NC_012791.1 2062860 2063948 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class I and II; aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: pna:Pnap_3126 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 2062860..2063948 Variovorax paradoxus S110 7971108 YP_002943843.1 CDS Vapar_1930 NC_012791.1 2064016 2065335 D KEGG: ajs:Ajs_3022 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2064016..2065335 Variovorax paradoxus S110 7971109 YP_002943844.1 CDS Vapar_1931 NC_012791.1 2065447 2066685 D KEGG: par:Psyc_0666 hypothetical protein; hypothetical protein 2065447..2066685 Variovorax paradoxus S110 7971110 YP_002943845.1 CDS Vapar_1932 NC_012791.1 2066720 2067928 D hypothetical protein 2066720..2067928 Variovorax paradoxus S110 7971111 YP_002943846.1 CDS Vapar_1933 NC_012791.1 2067997 2068896 D PFAM: glycosyl transferase family 2; KEGG: sfv:SFV_2092 dTDP-rhamnosyl transferase; family 2 glycosyl transferase 2067997..2068896 Variovorax paradoxus S110 7971112 YP_002943847.1 CDS Vapar_1934 NC_012791.1 2068916 2069515 D PFAM: sugar transferase; KEGG: ajs:Ajs_3034 undecaprenyl-phosphate galactose phosphotransferase; undecaprenyl-phosphate galactose phosphotransferase 2068916..2069515 Variovorax paradoxus S110 7971113 YP_002943848.1 CDS Vapar_1935 NC_012791.1 2069508 2070482 D undetermined role; similar to CarB protein but much smaller; carbamoyl phosphate synthase-like protein 2069508..2070482 Variovorax paradoxus S110 7971114 YP_002943849.1 CDS Vapar_1936 NC_012791.1 2070469 2071134 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: vpa:VP0233 hypothetical protein; HAD superfamily hydrolase 2070469..2071134 Variovorax paradoxus S110 7971115 YP_002943850.1 CDS Vapar_1937 NC_012791.1 2071128 2072306 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tmz:Tmz1t_1130 DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase 2071128..2072306 Variovorax paradoxus S110 7971116 YP_002943851.1 CDS Vapar_1938 NC_012791.1 2072378 2072707 D PFAM: VanZ family protein; KEGG: rfr:Rfer_2680 hypothetical protein; VanZ family protein 2072378..2072707 Variovorax paradoxus S110 7971117 YP_002943852.1 CDS Vapar_1939 NC_012791.1 2072704 2074698 D PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_2679 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 2072704..2074698 Variovorax paradoxus S110 7971118 YP_002943853.1 CDS Vapar_1940 NC_012791.1 2074756 2077023 R KEGG: pna:Pnap_3194 exopolysaccharide transport protein family; TIGRFAM: exopolysaccharide transport protein family; capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; exopolysaccharide transport family protein complement(2074756..2077023) Variovorax paradoxus S110 7971119 YP_002943854.1 CDS Vapar_1941 NC_012791.1 2077020 2077454 R PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: cti:RALTA_A1639 low molecular weight protein-tyrosine-phosphatase (EPS I polysaccharide export protein); protein tyrosine phosphatase complement(2077020..2077454) Variovorax paradoxus S110 7971120 YP_002943855.1 CDS Vapar_1942 NC_012791.1 2077486 2080458 R PFAM: protein of unknown function DUF940 membrane lipoprotein ; protein of unknown function DUF1017; KEGG: bte:BTH_II1988 OtnG protein; hypothetical protein complement(2077486..2080458) Variovorax paradoxus S110 7971121 YP_002943856.1 CDS Vapar_1943 NC_012791.1 2080455 2081093 R KEGG: bps:BPSS0416 lipoprotein; lipoprotein complement(2080455..2081093) Variovorax paradoxus S110 7971122 YP_002943857.1 CDS Vapar_1944 NC_012791.1 2081805 2083169 R PFAM: type III effector Hrp-dependent outers; KEGG: pol:Bpro_0031 type III effector Hrp-dependent outers; Hrp-dependent type III effector protein complement(2081805..2083169) Variovorax paradoxus S110 7971123 YP_002943858.1 CDS Vapar_1945 NC_012791.1 2083169 2084440 R PFAM: ribulose bisphosphate carboxylase large chain; KEGG: pol:Bpro_0032 ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO-like protein complement(2083169..2084440) Variovorax paradoxus S110 7971124 YP_002943859.1 CDS Vapar_1946 NC_012791.1 2084437 2084976 R KEGG: pol:Bpro_0033 hypothetical protein; hypothetical protein complement(2084437..2084976) Variovorax paradoxus S110 7971125 YP_002943860.1 CDS Vapar_1947 NC_012791.1 2085014 2086921 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pol:Bpro_0034 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(2085014..2086921) Variovorax paradoxus S110 7971126 YP_002943861.1 CDS Vapar_1948 NC_012791.1 2086928 2087956 R TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_0035 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(2086928..2087956) Variovorax paradoxus S110 7971373 YP_002943862.1 CDS Vapar_1949 NC_012791.1 2088082 2089137 D PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: pol:Bpro_0036 LacI family transcriptional regulator; LacI family transcriptional regulator 2088082..2089137 Variovorax paradoxus S110 7969742 YP_002943863.1 CDS Vapar_1950 NC_012791.1 2089165 2089968 R KEGG: reh:H16_B1180 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase complement(2089165..2089968) Variovorax paradoxus S110 7969743 YP_002943864.1 CDS Vapar_1951 NC_012791.1 2089997 2091466 R KEGG: dac:Daci_2346 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinic semialdehyde dehydrogenase complement(2089997..2091466) Variovorax paradoxus S110 7969744 YP_002943865.1 CDS Vapar_1952 NC_012791.1 2091489 2093012 R PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; SAF domain protein; KEGG: dac:Daci_2347 galactarate dehydratase; Galactarate dehydratase complement(2091489..2093012) Variovorax paradoxus S110 7969745 YP_002943866.1 CDS Vapar_1953 NC_012791.1 2093012 2094007 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4279 hypothetical protein; hypothetical protein complement(2093012..2094007) Variovorax paradoxus S110 7969746 YP_002943867.1 CDS Vapar_1954 NC_012791.1 2094142 2095083 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_2084 LysR family transcriptional regulator; LysR family transcriptional regulator 2094142..2095083 Variovorax paradoxus S110 7969747 YP_002943868.1 CDS Vapar_1955 NC_012791.1 2095163 2095582 D PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: xca:xccb100_2092 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 2095163..2095582 Variovorax paradoxus S110 7969748 YP_002943869.1 CDS Vapar_1956 NC_012791.1 2095591 2095797 R hypothetical protein complement(2095591..2095797) Variovorax paradoxus S110 7969749 YP_002943870.1 CDS Vapar_1957 NC_012791.1 2095844 2096104 R hypothetical protein complement(2095844..2096104) Variovorax paradoxus S110 7969750 YP_002943871.1 CDS Vapar_1959 NC_012791.1 2096434 2097714 R PFAM: NUDIX hydrolase; KEGG: cti:RALTA_B1427 hydrolase; NUDIX (NUcleoside DIphosphate) hydrolase motif; metallo-hydrolase/oxidoreductase; NUDIX hydrolase complement(2096434..2097714) Variovorax paradoxus S110 7969752 YP_002943872.1 CDS Vapar_1960 NC_012791.1 2097807 2098547 R TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: bpt:Bpet4549 NADPH-dependent FMN reductase; arsenical resistance protein ArsH complement(2097807..2098547) Variovorax paradoxus S110 7969753 YP_002943873.1 CDS Vapar_1961 NC_012791.1 2098513 2098959 R KEGG: bpt:Bpet1022 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase complement(2098513..2098959) Variovorax paradoxus S110 7969754 YP_002943874.1 CDS Vapar_1962 NC_012791.1 2098989 2099306 D SMART: regulatory protein ArsR; KEGG: ajs:Ajs_3055 ArsR family transcriptional regulator; ArsR family transcriptional regulator 2098989..2099306 Variovorax paradoxus S110 7969755 YP_002943875.1 CDS Vapar_1963 NC_012791.1 2099300 2100388 D TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: reh:H16_A2176 arsenite efflux pump ACR3; arsenical-resistance protein 2099300..2100388 Variovorax paradoxus S110 7969756 YP_002943876.1 CDS Vapar_1964 NC_012791.1 2100451 2101233 D TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase; KEGG: cti:RALTA_B2077 exodeoxyribonuclease III, AP endonuclease, family 1; exodeoxyribonuclease III Xth 2100451..2101233 Variovorax paradoxus S110 7969757 YP_002943877.1 CDS Vapar_1965 NC_012791.1 2101326 2102072 D PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: azo:azo0335 EAL-domain-containing protein; diguanylate phosphodiesterase 2101326..2102072 Variovorax paradoxus S110 7969758 YP_002943878.1 CDS Vapar_1966 NC_012791.1 2102085 2104013 R PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: mpt:Mpe_A2969 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; type II secretion system protein E complement(2102085..2104013) Variovorax paradoxus S110 7969759 YP_002943879.1 CDS Vapar_1967 NC_012791.1 2104123 2107203 R KEGG: lch:Lcho_2470 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; Cache domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(2104123..2107203) Variovorax paradoxus S110 7969760 YP_002943880.1 CDS Vapar_1968 NC_012791.1 2107331 2108995 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bra:BRADO0512 maltose alpha-D-glucosyltransferase; alpha amylase catalytic subunit complement(2107331..2108995) Variovorax paradoxus S110 7969761 YP_002943881.1 CDS Vapar_1969 NC_012791.1 2109056 2110666 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rpe:RPE_4865 alpha amylase, catalytic region; alpha amylase catalytic subunit 2109056..2110666 Variovorax paradoxus S110 7969762 YP_002943882.1 CDS Vapar_1970 NC_012791.1 2110702 2112048 R PFAM: Erythromycin esterase; KEGG: met:M446_2872 erythromycin esterase; Erythromycin esterase complement(2110702..2112048) Variovorax paradoxus S110 7969763 YP_002943883.1 CDS Vapar_1971 NC_012791.1 2112061 2112726 R KEGG: har:HEAR2529 hypothetical protein; hypothetical protein complement(2112061..2112726) Variovorax paradoxus S110 7969764 YP_002943884.1 CDS Vapar_1972 NC_012791.1 2112869 2113210 R hypothetical protein complement(2112869..2113210) Variovorax paradoxus S110 7969765 YP_002943885.1 CDS Vapar_1973 NC_012791.1 2113258 2113677 R PFAM: heat shock protein Hsp20; KEGG: lch:Lcho_3376 heat shock protein HSP20; heat shock protein Hsp20 complement(2113258..2113677) Variovorax paradoxus S110 7969766 YP_002943886.1 CDS Vapar_1974 NC_012791.1 2113720 2114157 R PFAM: heat shock protein Hsp20; KEGG: lch:Lcho_3375 heat shock protein HSP20; heat shock protein Hsp20 complement(2113720..2114157) Variovorax paradoxus S110 7969767 YP_002943887.1 CDS Vapar_1975 NC_012791.1 2114262 2114408 R hypothetical protein complement(2114262..2114408) Variovorax paradoxus S110 7969768 YP_002943888.1 CDS Vapar_1976 NC_012791.1 2114432 2114791 D KEGG: dia:Dtpsy_1357 hypothetical protein; hypothetical protein 2114432..2114791 Variovorax paradoxus S110 7969769 YP_002943889.1 CDS Vapar_1977 NC_012791.1 2114897 2115217 D hypothetical protein 2114897..2115217 Variovorax paradoxus S110 7969770 YP_002943890.1 CDS Vapar_1978 NC_012791.1 2115412 2117310 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2115412..2117310 Variovorax paradoxus S110 7969771 YP_002943891.1 CDS Vapar_1979 NC_012791.1 2117307 2119361 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rfr:Rfer_2161 alpha amylase; alpha amylase catalytic subunit 2117307..2119361 Variovorax paradoxus S110 7969772 YP_002943892.1 CDS Vapar_1980 NC_012791.1 2119372 2122701 D KEGG: rfr:Rfer_2160 trehalose synthase-like; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; aminoglycoside phosphotransferase; SMART: alpha amylase catalytic sub domain; trehalose synthase 2119372..2122701 Variovorax paradoxus S110 7969773 YP_002943893.1 CDS Vapar_1981 NC_012791.1 2122760 2123500 D PFAM: Conserved TM helix repeat-containing protein; KEGG: rfr:Rfer_2159 TM helix protein; TM helix repeat-containing protein 2122760..2123500 Variovorax paradoxus S110 7969774 YP_002943894.1 CDS Vapar_1982 NC_012791.1 2123527 2125692 D KEGG: rfr:Rfer_2158 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 2123527..2125692 Variovorax paradoxus S110 7969775 YP_002943895.1 CDS Vapar_1983 NC_012791.1 2125689 2127524 D KEGG: rfr:Rfer_2157 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 2125689..2127524 Variovorax paradoxus S110 7969776 YP_002943896.1 CDS Vapar_1984 NC_012791.1 2127547 2132568 D amylomaltase; acts to release glucose from maltodextrins; bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase 2127547..2132568 Variovorax paradoxus S110 7969777 YP_002943897.1 CDS Vapar_1985 NC_012791.1 2133303 2133875 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: azc:AZC_1503 transcriptional regulator; XRE family transcriptional regulator complement(2133303..2133875) Variovorax paradoxus S110 7969778 YP_002943898.1 CDS Vapar_1986 NC_012791.1 2134138 2134443 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ajs:Ajs_1806 XRE family transcriptional regulator; XRE family transcriptional regulator 2134138..2134443 Variovorax paradoxus S110 7969779 YP_002943899.1 CDS Vapar_1987 NC_012791.1 2135447 2136010 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: azc:AZC_1503 transcriptional regulator; XRE family transcriptional regulator 2135447..2136010 Variovorax paradoxus S110 7969780 YP_002943900.1 CDS Vapar_1988 NC_012791.1 2136656 2136775 D hypothetical protein 2136656..2136775 Variovorax paradoxus S110 7969781 YP_002943901.1 CDS Vapar_1989 NC_012791.1 2136840 2137178 R PFAM: PRC-barrel domain protein; KEGG: dac:Daci_1971 PRC-barrel domain-containing protein; PRC-barrel domain-containing protein complement(2136840..2137178) Variovorax paradoxus S110 7969782 YP_002943902.1 CDS Vapar_1990 NC_012791.1 2137334 2137777 R PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: cti:RALTA_A0019 MerR family transcriptional regulator; MerR family transcriptional regulator complement(2137334..2137777) Variovorax paradoxus S110 7969783 YP_002943903.1 CDS Vapar_1991 NC_012791.1 2137852 2138703 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bac:BamMC406_4043 methyltransferase type 11; type 11 methyltransferase 2137852..2138703 Variovorax paradoxus S110 7969784 YP_002943904.1 CDS Vapar_1992 NC_012791.1 2138710 2141244 R KEGG: bpt:Bpet3215 cytochrome C oxidase subunit; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I complement(2138710..2141244) Variovorax paradoxus S110 7969785 YP_002943905.1 CDS Vapar_1993 NC_012791.1 2141241 2142185 R TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; KEGG: eba:ebA4547 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II complement(2141241..2142185) Variovorax paradoxus S110 7969786 YP_002943906.1 CDS Vapar_1994 NC_012791.1 2142182 2142580 R KEGG: bpt:Bpet3213 cytochrome C; cytochrome C complement(2142182..2142580) Variovorax paradoxus S110 7969787 YP_002943907.1 CDS Vapar_1995 NC_012791.1 2142659 2143540 D PFAM: cytochrome C class I; KEGG: eba:ebA4537 di-heme cytochrome C; cytochrome C class I 2142659..2143540 Variovorax paradoxus S110 7969788 YP_002943908.1 CDS Vapar_1996 NC_012791.1 2143550 2143813 R hypothetical protein complement(2143550..2143813) Variovorax paradoxus S110 7969789 YP_002943909.1 CDS Vapar_1997 NC_012791.1 2143853 2144284 R KEGG: aav:Aave_0313 hypothetical protein; hypothetical protein complement(2143853..2144284) Variovorax paradoxus S110 7969790 YP_002943910.1 CDS Vapar_1998 NC_012791.1 2144542 2144976 D KEGG: aav:Aave_0313 hypothetical protein; hypothetical protein 2144542..2144976 Variovorax paradoxus S110 7969791 YP_002943911.1 CDS Vapar_1999 NC_012791.1 2144995 2146776 R PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: bpt:Bpet2376 pyruvate decarboxylase; thiamine pyrophosphate TPP binding domain-containing protein complement(2144995..2146776) Variovorax paradoxus S110 7969792 YP_002943912.1 CDS Vapar_2000 NC_012791.1 2146972 2147286 D KEGG: nha:Nham_3948 hypothetical protein; hypothetical protein 2146972..2147286 Variovorax paradoxus S110 7969793 YP_002943913.1 CDS Vapar_2001 NC_012791.1 2147307 2147780 D PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dia:Dtpsy_1821 CBS domain containing protein; signal transduction protein with CBS domains 2147307..2147780 Variovorax paradoxus S110 7969794 YP_002943914.1 CDS Vapar_2002 NC_012791.1 2147832 2148440 R PFAM: isochorismatase hydrolase; KEGG: scl:sce2665 isochorismatase; isochorismatase hydrolase complement(2147832..2148440) Variovorax paradoxus S110 7969795 YP_002943915.1 CDS Vapar_2003 NC_012791.1 2148550 2148750 R hypothetical protein complement(2148550..2148750) Variovorax paradoxus S110 7969796 YP_002943916.1 CDS Vapar_2004 NC_012791.1 2149138 2150310 D KEGG: mno:Mnod_2225 biotin carboxylase; biotin carboxylase 2149138..2150310 Variovorax paradoxus S110 7969797 YP_002943917.1 CDS Vapar_2005 NC_012791.1 2150291 2151070 D KEGG: bpt:Bpet2397 hypothetical protein; hypothetical protein 2150291..2151070 Variovorax paradoxus S110 7969798 YP_002943918.1 CDS Vapar_2006 NC_012791.1 2151086 2151589 D KEGG: pna:Pnap_2975 hypothetical protein; hypothetical protein 2151086..2151589 Variovorax paradoxus S110 7969799 YP_002943919.1 CDS Vapar_2007 NC_012791.1 2151713 2152207 D PFAM: hemerythrin HHE cation binding domain protein; KEGG: aav:Aave_3879 hemerythrin HHE cation binding domain-containing protein; hemerythrin HHE cation binding domain-containing protein 2151713..2152207 Variovorax paradoxus S110 7969800 YP_002943920.1 CDS Vapar_2008 NC_012791.1 2152344 2152952 D PFAM: hemerythrin HHE cation binding domain protein; KEGG: pna:Pnap_1314 hemerythrin HHE cation binding domain-containing protein; hemerythrin HHE cation binding domain-containing protein 2152344..2152952 Variovorax paradoxus S110 7969801 YP_002943921.1 CDS Vapar_2010 NC_012791.1 2153200 2155626 D PFAM: catalase domain protein; ThiJ/PfpI domain protein; KEGG: pna:Pnap_1830 catalase; catalase 2153200..2155626 Variovorax paradoxus S110 7969803 YP_002943922.1 CDS Vapar_2011 NC_012791.1 2155623 2156936 R PFAM: FAD dependent oxidoreductase; KEGG: cti:RALTA_A1621 gamma-Glu-putrescine oxidase FAD/NAD(P)-binding; FAD dependent oxidoreductase complement(2155623..2156936) Variovorax paradoxus S110 7969804 YP_002943923.1 CDS Vapar_2012 NC_012791.1 2156937 2158361 R PFAM: homospermidine synthase; KEGG: nmu:Nmul_A1700 homospermidine synthase; Homospermidine synthase complement(2156937..2158361) Variovorax paradoxus S110 7969805 YP_002943924.1 CDS Vapar_2013 NC_012791.1 2158358 2158486 R hypothetical protein complement(2158358..2158486) Variovorax paradoxus S110 7969806 YP_002943925.1 CDS Vapar_2014 NC_012791.1 2158558 2160213 D PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: rpi:Rpic_4172 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 2158558..2160213 Variovorax paradoxus S110 7969807 YP_002943926.1 CDS Vapar_2015 NC_012791.1 2160230 2160733 R PFAM: peptidase M23; KEGG: aav:Aave_1416 peptidase M23B; peptidase M23 complement(2160230..2160733) Variovorax paradoxus S110 7969808 YP_002943927.1 CDS Vapar_2016 NC_012791.1 2160830 2161336 R PFAM: CreA family protein; KEGG: eba:ebA3483 CreA protein; CreA family protein complement(2160830..2161336) Variovorax paradoxus S110 7969809 YP_002943928.1 CDS Vapar_2017 NC_012791.1 2161348 2161899 R PFAM: NUDIX hydrolase; KEGG: pna:Pnap_2817 NUDIX hydrolase; NUDIX hydrolase complement(2161348..2161899) Variovorax paradoxus S110 7969810 YP_002943929.1 CDS Vapar_2018 NC_012791.1 2161910 2162611 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_2124 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(2161910..2162611) Variovorax paradoxus S110 7969811 YP_002943930.1 CDS Vapar_2019 NC_012791.1 2162700 2163341 D KEGG: pol:Bpro_2136 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain; maleylacetoacetate isomerase 2162700..2163341 Variovorax paradoxus S110 7969812 YP_002943931.1 CDS Vapar_2020 NC_012791.1 2163356 2164123 D PFAM: protein of unknown function DUF152; KEGG: pol:Bpro_2137 protein of unknown function DUF152; hypothetical protein 2163356..2164123 Variovorax paradoxus S110 7969813 YP_002943932.1 CDS Vapar_2021 NC_012791.1 2164055 2164378 R KEGG: rfr:Rfer_2563 hypothetical protein; hypothetical protein complement(2164055..2164378) Variovorax paradoxus S110 7969814 YP_002943933.1 CDS Vapar_2022 NC_012791.1 2164492 2166243 D TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: rfr:Rfer_2562 poly(R)-hydroxyalkanoic acid synthase, class I; poly(R)-hydroxyalkanoic acid synthase, class I 2164492..2166243 Variovorax paradoxus S110 7969815 YP_002943934.1 CDS Vapar_2023 NC_012791.1 2166309 2167487 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 2166309..2167487 Variovorax paradoxus S110 7969816 YP_002943935.1 CDS Vapar_2024 NC_012791.1 2167997 2168908 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_0586 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2167997..2168908) Variovorax paradoxus S110 7969817 YP_002943936.1 CDS Vapar_2025 NC_012791.1 2169019 2169993 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_0585 uncharacterized protein UPF0065; hypothetical protein 2169019..2169993 Variovorax paradoxus S110 7969818 YP_002943937.1 CDS Vapar_2026 NC_012791.1 2170002 2170910 D KEGG: pol:Bpro_0584 hypothetical protein; hypothetical protein 2170002..2170910 Variovorax paradoxus S110 7969819 YP_002943938.1 CDS Vapar_2027 NC_012791.1 2170907 2172112 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pna:Pnap_2141 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2170907..2172112 Variovorax paradoxus S110 7969820 YP_002943939.1 CDS Vapar_2028 NC_012791.1 2172109 2172996 D PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase; HpcH/HpaI aldolase 2172109..2172996 Variovorax paradoxus S110 7969821 YP_002943940.1 CDS Vapar_2029 NC_012791.1 2172993 2173997 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0115 hypothetical protein; hypothetical protein 2172993..2173997 Variovorax paradoxus S110 7969822 YP_002943941.1 CDS Vapar_2030 NC_012791.1 2173994 2174518 R PFAM: CinA domain protein; KEGG: bra:BRADO0913 competence-damaged protein; CinA domain-containing protein complement(2173994..2174518) Variovorax paradoxus S110 7971128 YP_002943942.1 CDS fabG NC_012791.1 2174742 2175479 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 2174742..2175479 Variovorax paradoxus S110 7972433 YP_002943943.1 CDS Vapar_2032 NC_012791.1 2175606 2176949 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 2175606..2176949 Variovorax paradoxus S110 7972434 YP_002943944.1 CDS Vapar_2033 NC_012791.1 2176997 2178694 D PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: pol:Bpro_2149 sodium/hydrogen exchanger; sodium/hydrogen exchanger 2176997..2178694 Variovorax paradoxus S110 7972435 YP_002943945.1 CDS Vapar_2034 NC_012791.1 2178729 2179133 R KEGG: pol:Bpro_2151 hypothetical protein; hypothetical protein complement(2178729..2179133) Variovorax paradoxus S110 7972436 YP_002943946.1 CDS Vapar_2035 NC_012791.1 2179526 2180884 D PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; oxidoreductase domain protein; KEGG: har:HEAR2150 homoserine dehydrogenase; homoserine dehydrogenase 2179526..2180884 Variovorax paradoxus S110 7972437 YP_002943947.1 CDS Vapar_2036 NC_012791.1 2180938 2181324 D KEGG: rsh:Rsph17029_4031 hypothetical protein; hypothetical protein 2180938..2181324 Variovorax paradoxus S110 7972438 YP_002943948.1 CDS Vapar_2037 NC_012791.1 2181343 2182194 R PFAM: protein of unknown function RIO1; SMART: protein of unknown function RIO1; KEGG: pna:Pnap_0163 protein of unknown function RIO1; hypothetical protein complement(2181343..2182194) Variovorax paradoxus S110 7972439 YP_002943949.1 CDS Vapar_2038 NC_012791.1 2182510 2182896 D KEGG: FAP92; flagellar associated protein; FAP92; flagellar associated protein 2182510..2182896 Variovorax paradoxus S110 7972440 YP_002943950.1 CDS Vapar_2039 NC_012791.1 2183013 2183981 D PFAM: conserved hypothetical protein; KEGG: bbr:BB4843 hypothetical protein; hypothetical protein 2183013..2183981 Variovorax paradoxus S110 7972441 YP_002943951.1 CDS Vapar_2040 NC_012791.1 2184038 2185459 D PFAM: protein of unknown function DUF1446; KEGG: pna:Pnap_2761 hypothetical protein; hypothetical protein 2184038..2185459 Variovorax paradoxus S110 7972442 YP_002943952.1 CDS Vapar_2041 NC_012791.1 2185456 2185824 D KEGG: pna:Pnap_2762 hypothetical protein; hypothetical protein 2185456..2185824 Variovorax paradoxus S110 7972443 YP_002943953.1 CDS Vapar_2042 NC_012791.1 2185872 2186843 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_2763 hypothetical protein; hypothetical protein 2185872..2186843 Variovorax paradoxus S110 7972444 YP_002943954.1 CDS Vapar_2043 NC_012791.1 2186906 2188996 D KEGG: dac:Daci_0716 hypothetical protein; hypothetical protein 2186906..2188996 Variovorax paradoxus S110 7972445 YP_002943955.1 CDS Vapar_2044 NC_012791.1 2188993 2189790 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bmj:BMULJ_03551 NAD(P)H dehydrogenase; NAD(P)H dehydrogenase (quinone) complement(2188993..2189790) Variovorax paradoxus S110 7972446 YP_002943956.1 CDS Vapar_2045 NC_012791.1 2189880 2190773 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bxe:Bxe_B2111 LysR family transcriptional regulator; LysR family transcriptional regulator 2189880..2190773 Variovorax paradoxus S110 7972447 YP_002943957.1 CDS Vapar_2046 NC_012791.1 2190820 2191224 R KEGG: tbd:Tbd_1062 hypothetical protein; hypothetical protein complement(2190820..2191224) Variovorax paradoxus S110 7972448 YP_002943958.1 CDS Vapar_2047 NC_012791.1 2191350 2191787 R PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: bav:BAV3388 AsnC/Lrp-family transcriptional regulator; AsnC family transcriptional regulator complement(2191350..2191787) Variovorax paradoxus S110 7972449 YP_002943959.1 CDS Vapar_2048 NC_012791.1 2191910 2193700 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: bpt:Bpet0027 acetolactate synthase large subunit; acetolactate synthase, large subunit, biosynthetic type 2191910..2193700 Variovorax paradoxus S110 7972450 YP_002943960.1 CDS Vapar_2049 NC_012791.1 2193697 2195256 R PFAM: sodium/hydrogen exchanger; KEGG: rlt:Rleg2_3106 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(2193697..2195256) Variovorax paradoxus S110 7972451 YP_002943961.1 CDS Vapar_2051 NC_012791.1 2195575 2196090 D PFAM: protein of unknown function DUF305; KEGG: oan:Oant_3245 protein of unknown function DUF305; hypothetical protein 2195575..2196090 Variovorax paradoxus S110 7972453 YP_002943962.1 CDS Vapar_2052 NC_012791.1 2196116 2197189 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(2196116..2197189) Variovorax paradoxus S110 7972454 YP_002943963.1 CDS Vapar_2053 NC_012791.1 2197186 2198145 R PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_1614 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2197186..2198145) Variovorax paradoxus S110 7972455 YP_002943964.1 CDS Vapar_2054 NC_012791.1 2198169 2199419 D PFAM: protein of unknown function DUF323; KEGG: lch:Lcho_1725 hypothetical protein; hypothetical protein 2198169..2199419 Variovorax paradoxus S110 7972456 YP_002943965.1 CDS Vapar_2055 NC_012791.1 2199472 2200329 D TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: lch:Lcho_1723 phosphonate ABC transporter periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 2199472..2200329 Variovorax paradoxus S110 7972457 YP_002943966.1 CDS Vapar_2056 NC_012791.1 2200355 2201173 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_2237 ABC transporter; ABC transporter 2200355..2201173 Variovorax paradoxus S110 7972458 YP_002943967.1 CDS Vapar_2057 NC_012791.1 2201176 2202015 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2238 phosphonate uptake transporter; binding-protein-dependent transport systems inner membrane component 2201176..2202015 Variovorax paradoxus S110 7972459 YP_002943968.1 CDS Vapar_2058 NC_012791.1 2202029 2202868 D TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2239 phosphonate uptake transporter; phosphonate ABC transporter inner membrane subunit 2202029..2202868 Variovorax paradoxus S110 7972460 YP_002943969.1 CDS Vapar_2061 NC_012791.1 2203687 2204145 D KEGG: mpt:Mpe_A0686 lipoprotein; lipoprotein 2203687..2204145 Variovorax paradoxus S110 7972463 YP_002943970.1 CDS Vapar_2062 NC_012791.1 2204235 2204495 D hypothetical protein 2204235..2204495 Variovorax paradoxus S110 7972464 YP_002943971.1 CDS Vapar_2063 NC_012791.1 2204492 2204686 D KEGG: mpt:Mpe_A0687 hypothetical protein; hypothetical protein 2204492..2204686 Variovorax paradoxus S110 7972465 YP_002943972.1 CDS Vapar_2064 NC_012791.1 2204683 2206854 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mpt:Mpe_A0688 TonB-dependent receptor protein; TonB-dependent siderophore receptor 2204683..2206854 Variovorax paradoxus S110 7972466 YP_002943973.1 CDS Vapar_2066 NC_012791.1 2207687 2209816 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_2896 TonB-dependent receptor; TonB-dependent receptor 2207687..2209816 Variovorax paradoxus S110 7972468 YP_002943974.1 CDS Vapar_2067 NC_012791.1 2209816 2211234 D PFAM: PepSY-associated TM helix domain protein; KEGG: aav:Aave_4447 peptidase; PepSY-associated TM helix domain-containing protein 2209816..2211234 Variovorax paradoxus S110 7972469 YP_002943975.1 CDS Vapar_2068 NC_012791.1 2211928 2214096 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_4462 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2211928..2214096 Variovorax paradoxus S110 7972470 YP_002943976.1 CDS Vapar_2069 NC_012791.1 2214098 2215654 D PFAM: extracellular solute-binding protein family 5; KEGG: mpo:Mpop_3809 extracellular solute-binding protein family 5; family 5 extracellular solute-binding protein 2214098..2215654 Variovorax paradoxus S110 7972471 YP_002943977.1 CDS Vapar_2070 NC_012791.1 2215651 2216640 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4002 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2215651..2216640 Variovorax paradoxus S110 7972472 YP_002943978.1 CDS Vapar_2071 NC_012791.1 2216637 2217473 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4003 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2216637..2217473 Variovorax paradoxus S110 7972473 YP_002943979.1 CDS Vapar_2072 NC_012791.1 2217470 2218873 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aav:Aave_4004 ABC transporter-related protein; ABC transporter 2217470..2218873 Variovorax paradoxus S110 7972474 YP_002943980.1 CDS Vapar_2073 NC_012791.1 2219092 2219292 R hypothetical protein complement(2219092..2219292) Variovorax paradoxus S110 7972475 YP_002943981.1 CDS Vapar_2074 NC_012791.1 2219572 2220855 R KEGG: bvi:Bcep1808_7010 hypothetical protein; hypothetical protein complement(2219572..2220855) Variovorax paradoxus S110 7972476 YP_002943982.1 CDS Vapar_2075 NC_012791.1 2221195 2221596 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(2221195..2221596) Variovorax paradoxus S110 7972477 YP_002943983.1 CDS Vapar_2078 NC_012791.1 2222925 2224958 D PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: pna:Pnap_4159 nuclease; ParB domain-containing protein nuclease 2222925..2224958 Variovorax paradoxus S110 7972480 YP_002943984.1 CDS Vapar_2079 NC_012791.1 2225248 2225712 D KEGG: rru:Rru_A0734 thioesterase superfamily protein; hypothetical protein 2225248..2225712 Variovorax paradoxus S110 7972481 YP_002943985.1 CDS Vapar_2080 NC_012791.1 2226211 2226519 D PFAM: protein of unknown function DUF736; KEGG: pna:Pnap_4161 hypothetical protein; hypothetical protein 2226211..2226519 Variovorax paradoxus S110 7972482 YP_002943986.1 CDS Vapar_2081 NC_012791.1 2227141 2227482 D KEGG: rpi:Rpic_2608 hypothetical protein; hypothetical protein 2227141..2227482 Variovorax paradoxus S110 7972483 YP_002943987.1 CDS Vapar_2082 NC_012791.1 2227494 2227802 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pna:Pnap_4162 XRE family transcriptional regulator; XRE family transcriptional regulator complement(2227494..2227802) Variovorax paradoxus S110 7972484 YP_002943988.1 CDS Vapar_2083 NC_012791.1 2227945 2228286 D KEGG: aav:Aave_0683 lipoprotein; lipoprotein 2227945..2228286 Variovorax paradoxus S110 7972485 YP_002943989.1 CDS Vapar_2085 NC_012791.1 2229360 2229593 D KEGG: bam:Bamb_1984 hypothetical protein; hypothetical protein 2229360..2229593 Variovorax paradoxus S110 7972487 YP_002943990.1 CDS Vapar_2086 NC_012791.1 2229622 2230626 D KEGG: bpt:Bpet4564 replication protein; Plasmid replication initiator protein-like protein 2229622..2230626 Variovorax paradoxus S110 7972488 YP_002943991.1 CDS Vapar_2087 NC_012791.1 2230647 2231405 D PFAM: cobyrinic acid ac-diamide synthase; KEGG: bpt:Bpet4565 partition protein; cobyrinic acid ac-diamide synthase 2230647..2231405 Variovorax paradoxus S110 7972489 YP_002943992.1 CDS Vapar_2088 NC_012791.1 2231402 2231665 D KEGG: ajs:Ajs_2656 hypothetical protein; hypothetical protein 2231402..2231665 Variovorax paradoxus S110 7972490 YP_002943993.1 CDS Vapar_2089 NC_012791.1 2231665 2232192 D KEGG: dac:Daci_2718 hypothetical protein; hypothetical protein 2231665..2232192 Variovorax paradoxus S110 7972491 YP_002943994.1 CDS Vapar_2090 NC_012791.1 2232189 2232722 D KEGG: pna:Pnap_4170 conjugal transfer TRAF transmembrane protein; conjugal transfer TRAF transmembrane protein 2232189..2232722 Variovorax paradoxus S110 7972492 YP_002943995.1 CDS Vapar_2091 NC_012791.1 2233098 2234810 D KEGG: nwi:Nwi_2851 hypothetical protein; hypothetical protein 2233098..2234810 Variovorax paradoxus S110 7972493 YP_002943996.1 CDS Vapar_2092 NC_012791.1 2234946 2235842 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RS03093 transcription regulator protein; LysR family transcriptional regulator complement(2234946..2235842) Variovorax paradoxus S110 7972494 YP_002943997.1 CDS Vapar_2094 NC_012791.1 2236198 2237328 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: cti:RALTA_B0081 deshydratase, CoA-transferase; L-carnitine dehydratase/bile acid-inducible protein family; L-carnitine dehydratase/bile acid-inducible protein F complement(2236198..2237328) Variovorax paradoxus S110 7972496 YP_002943998.1 CDS Vapar_2095 NC_012791.1 2237336 2238310 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_1885 hypothetical protein; hypothetical protein complement(2237336..2238310) Variovorax paradoxus S110 7972497 YP_002943999.1 CDS Vapar_2096 NC_012791.1 2238345 2240054 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_1884 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein complement(2238345..2240054) Variovorax paradoxus S110 7972498 YP_002944000.1 CDS Vapar_2097 NC_012791.1 2240161 2241069 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_1842 LysR family transcriptional regulator; LysR family transcriptional regulator 2240161..2241069 Variovorax paradoxus S110 7972499 YP_002944001.1 CDS Vapar_2098 NC_012791.1 2241192 2241683 R PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_1001 hypothetical protein; GCN5-like N-acetyltransferaser complement(2241192..2241683) Variovorax paradoxus S110 7972500 YP_002944002.1 CDS Vapar_2099 NC_012791.1 2241784 2242434 R PFAM: regulatory protein TetR; KEGG: bch:Bcen2424_6861 TetR family transcriptional regulator; TetR family transcriptional regulator complement(2241784..2242434) Variovorax paradoxus S110 7972501 YP_002944003.1 CDS Vapar_2100 NC_012791.1 2242765 2243322 R PFAM: OsmC family protein; KEGG: pca:Pcar_2488 hypothetical protein; OsmC family protein complement(2242765..2243322) Variovorax paradoxus S110 7972502 YP_002944004.1 CDS Vapar_2101 NC_012791.1 2243498 2244640 R PFAM: extracellular ligand-binding receptor; KEGG: lch:Lcho_2592 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(2243498..2244640) Variovorax paradoxus S110 7972503 YP_002944005.1 CDS Vapar_2102 NC_012791.1 2244762 2245559 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_3793 ABC transporter; ABC transporter complement(2244762..2245559) Variovorax paradoxus S110 7972504 YP_002944006.1 CDS Vapar_2103 NC_012791.1 2245561 2246334 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dia:Dtpsy_2710 ABC transporter; ABC transporter complement(2245561..2246334) Variovorax paradoxus S110 7972505 YP_002944007.1 CDS Vapar_2104 NC_012791.1 2246354 2247550 R PFAM: inner-membrane translocator; KEGG: aav:Aave_1876 inner-membrane translocator; inner-membrane translocator complement(2246354..2247550) Variovorax paradoxus S110 7972506 YP_002944008.1 CDS Vapar_2105 NC_012791.1 2247564 2248493 R PFAM: inner-membrane translocator; KEGG: aav:Aave_1875 inner-membrane translocator; inner-membrane translocator complement(2247564..2248493) Variovorax paradoxus S110 7972507 YP_002944009.1 CDS Vapar_2106 NC_012791.1 2248609 2249811 R PFAM: aminotransferase class I and II; KEGG: bch:Bcen2424_6907 aminotransferase, class I and II; class I and II aminotransferase complement(2248609..2249811) Variovorax paradoxus S110 7972508 YP_002944010.1 CDS Vapar_2107 NC_012791.1 2249886 2250566 R PFAM: DSBA oxidoreductase; KEGG: bcm:Bcenmc03_4435 DsbA oxidoreductase; DSBA oxidoreductase complement(2249886..2250566) Variovorax paradoxus S110 7972509 YP_002944011.1 CDS Vapar_2110 NC_012791.1 2251950 2252867 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: aci:ACIAD1622 AraC family transcriptional regulator; AraC family transcriptional regulator complement(2251950..2252867) Variovorax paradoxus S110 7972512 YP_002944012.1 CDS Vapar_2111 NC_012791.1 2253288 2253887 D KEGG: bcm:Bcenmc03_3233 nitrile hydratase, alpha subunit; TIGRFAM: nitrile hydratase, subunit alpha; PFAM: nitrile hydratase alpha chain; nitrile hydratase subunit alpha 2253288..2253887 Variovorax paradoxus S110 7972513 YP_002944013.1 CDS Vapar_2112 NC_012791.1 2253923 2254501 D PFAM: nitrile hydratase subunit beta; KEGG: ppf:Pput_2729 nitrile hydratase; nitrile hydratase 2253923..2254501 Variovorax paradoxus S110 7973798 YP_002944014.1 CDS Vapar_2113 NC_012791.1 2254579 2256090 D PFAM: Integrase catalytic region; KEGG: mms:mma_2792 transposase IstA; integrase catalytic subunit 2254579..2256090 Variovorax paradoxus S110 7973799 YP_002944015.1 CDS Vapar_2114 NC_012791.1 2256083 2256892 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: mms:mma_2793 transposase; IstB domain-containing protein ATP-binding protein 2256083..2256892 Variovorax paradoxus S110 7973800 YP_002944016.1 CDS Vapar_2115 NC_012791.1 2257287 2257994 D KEGG: bcj:BCAM2788 chlorogenate esterase; chlorogenate esterase 2257287..2257994 Variovorax paradoxus S110 7973801 YP_002944017.1 CDS Vapar_2116 NC_012791.1 2258440 2258829 R PFAM: protein of unknown function DUF1486; KEGG: xca:xccb100_4121 hypothetical protein; hypothetical protein complement(2258440..2258829) Variovorax paradoxus S110 7973802 YP_002944018.1 CDS Vapar_2117 NC_012791.1 2259219 2260778 R PFAM: PepSY-associated TM helix domain protein; KEGG: mms:mma_0065 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(2259219..2260778) Variovorax paradoxus S110 7973803 YP_002944019.1 CDS Vapar_2118 NC_012791.1 2260795 2262909 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mms:mma_0066 TonB-dependent receptor; TonB-dependent siderophore receptor complement(2260795..2262909) Variovorax paradoxus S110 7973804 YP_002944020.1 CDS Vapar_2119 NC_012791.1 2263029 2263388 R KEGG: vei:Veis_4741 hypothetical protein; hypothetical protein complement(2263029..2263388) Variovorax paradoxus S110 7973805 YP_002944021.1 CDS Vapar_2120 NC_012791.1 2263795 2264298 R KEGG: bur:Bcep18194_B2832 hypothetical protein; hypothetical protein complement(2263795..2264298) Variovorax paradoxus S110 7973806 YP_002944022.1 CDS Vapar_2121 NC_012791.1 2264577 2265794 R PFAM: integrase family protein; KEGG: pla:Plav_1049 integrase family protein; integrase family protein complement(2264577..2265794) Variovorax paradoxus S110 7973807 YP_002944023.1 CDS Vapar_2122 NC_012791.1 2265890 2266891 D TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase; KEGG: rfr:Rfer_1943 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A 2265890..2266891 Variovorax paradoxus S110 7973808 YP_002944024.1 CDS Vapar_2123 NC_012791.1 2266904 2267785 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reu:Reut_D6479 taurine catabolism dioxygenase TauD/TfdA; Taurine catabolism dioxygenase TauD/TfdA complement(2266904..2267785) Variovorax paradoxus S110 7973809 YP_002944025.1 CDS Vapar_2124 NC_012791.1 2267820 2268866 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3974 hypothetical protein; hypothetical protein complement(2267820..2268866) Variovorax paradoxus S110 7973810 YP_002944026.1 CDS Vapar_2125 NC_012791.1 2268956 2269741 D PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: bxe:Bxe_A2906 IclR family transcriptional regulator; IclR family transcriptional regulator 2268956..2269741 Variovorax paradoxus S110 7973811 YP_002944027.1 CDS Vapar_2126 NC_012791.1 2269864 2270511 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rfr:Rfer_2806 GntR family transcriptional regulator; GntR family transcriptional regulator complement(2269864..2270511) Variovorax paradoxus S110 7973812 YP_002944028.1 CDS Vapar_2127 NC_012791.1 2270639 2272801 D MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 2270639..2272801 Variovorax paradoxus S110 7973813 YP_002944029.1 CDS Vapar_2128 NC_012791.1 2272812 2273288 D PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2162 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferaser 2272812..2273288 Variovorax paradoxus S110 7973814 YP_002944030.1 CDS Vapar_2129 NC_012791.1 2273282 2274334 D functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 2273282..2274334 Variovorax paradoxus S110 7973815 YP_002944031.1 CDS Vapar_2130 NC_012791.1 2274375 2275919 D PFAM: carboxyl transferase; KEGG: ajs:Ajs_2042 carboxyl transferase; carboxyl transferase 2274375..2275919 Variovorax paradoxus S110 7973816 YP_002944032.1 CDS Vapar_2131 NC_012791.1 2275940 2277988 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: aav:Aave_2515 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 2275940..2277988 Variovorax paradoxus S110 7973817 YP_002944033.1 CDS Vapar_2132 NC_012791.1 2277988 2279016 D KEGG: aav:Aave_2518 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 2277988..2279016 Variovorax paradoxus S110 7973818 YP_002944034.1 CDS Vapar_2133 NC_012791.1 2279013 2279504 D KEGG: rfr:Rfer_2801 lactoylglutathione lyase; lactoylglutathione lyase 2279013..2279504 Variovorax paradoxus S110 7973819 YP_002944035.1 CDS Vapar_2134 NC_012791.1 2279494 2279991 R PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: mpt:Mpe_A1560 AsnC family transcriptional regulator; AsnC family transcriptional regulator complement(2279494..2279991) Variovorax paradoxus S110 7973820 YP_002944036.1 CDS Vapar_2135 NC_012791.1 2280107 2281033 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A1559 transmembrane protein; hypothetical protein 2280107..2281033 Variovorax paradoxus S110 7973821 YP_002944037.1 CDS Vapar_2136 NC_012791.1 2281046 2281684 R PFAM: lysine exporter (LYSE/YGGA); KEGG: dac:Daci_4577 lysine exporter protein LysE/YggA; lysine exporter LysE/YggA complement(2281046..2281684) Variovorax paradoxus S110 7973822 YP_002944038.1 CDS Vapar_2137 NC_012791.1 2281681 2282325 R TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pol:Bpro_2170 electron transport complex, RnfABCDGE type, subunit beta; RnfABCDGE type electron transport complex subunit beta complement(2281681..2282325) Variovorax paradoxus S110 7973823 YP_002944039.1 CDS Vapar_2138 NC_012791.1 2282322 2283737 R TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: aav:Aave_2488 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase, intracellular complement(2282322..2283737) Variovorax paradoxus S110 7973824 YP_002944040.1 CDS Vapar_2139 NC_012791.1 2283896 2285092 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2283896..2285092) Variovorax paradoxus S110 7973825 YP_002944041.1 CDS Vapar_2140 NC_012791.1 2285199 2287316 D KEGG: pol:Bpro_2176 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC subunit B; PFAM: helicase domain protein; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase domain protein; excinuclease ABC subunit B 2285199..2287316 Variovorax paradoxus S110 7973826 YP_002944042.1 CDS Vapar_2141 NC_012791.1 2287551 2288087 D TIGRFAM: iron-sulfur cluster assembly transcription factor IscR; transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: aav:Aave_2442 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 2287551..2288087 Variovorax paradoxus S110 7973827 YP_002944043.1 CDS Vapar_2142 NC_012791.1 2288167 2289387 D KEGG: dia:Dtpsy_1638 cysteine desulfurase IscS; TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; cysteine desulfurase IscS 2288167..2289387 Variovorax paradoxus S110 7973828 YP_002944044.1 CDS Vapar_2143 NC_012791.1 2289417 2289836 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: dia:Dtpsy_1639 FeS cluster assembly scaffold IscU; FeS cluster assembly scaffold IscU 2289417..2289836 Variovorax paradoxus S110 7973829 YP_002944045.1 CDS Vapar_2144 NC_012791.1 2289838 2290161 D TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: pol:Bpro_2180 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 2289838..2290161 Variovorax paradoxus S110 7973830 YP_002944046.1 CDS Vapar_2145 NC_012791.1 2290225 2290743 D TIGRFAM: co-chaperone Hsc20; PFAM: HSC20 oligomerisation; heat shock protein DnaJ domain protein; KEGG: aav:Aave_2446 co-chaperone Hsc20; co-chaperone Hsc20 2290225..2290743 Variovorax paradoxus S110 7973831 YP_002944047.1 CDS hscA NC_012791.1 2290749 2292605 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2290749..2292605 Variovorax paradoxus S110 7973832 YP_002944048.1 CDS Vapar_2147 NC_012791.1 2292613 2292951 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: dia:Dtpsy_1643 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 2292613..2292951 Variovorax paradoxus S110 7973833 YP_002944049.1 CDS Vapar_2148 NC_012791.1 2292964 2293671 D KEGG: aav:Aave_2449 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, subunit epsilon; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; DNA polymerase III subunit epsilon 2292964..2293671 Variovorax paradoxus S110 7973834 YP_002944050.1 CDS Vapar_2149 NC_012791.1 2293874 2294254 R hypothetical protein complement(2293874..2294254) Variovorax paradoxus S110 7973836 YP_002944051.1 CDS Vapar_2150 NC_012791.1 2294245 2294847 R PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bur:Bcep18194_A3957 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD complement(2294245..2294847) Variovorax paradoxus S110 7973837 YP_002944052.1 CDS Vapar_2151 NC_012791.1 2295056 2295178 D KEGG: Strc; stereocilin; stereocilin 2295056..2295178 Variovorax paradoxus S110 7973838 YP_002944053.1 CDS Vapar_2152 NC_012791.1 2295214 2296317 D PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2706 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2295214..2296317 Variovorax paradoxus S110 7973839 YP_002944054.1 CDS Vapar_2153 NC_012791.1 2296467 2296763 D PFAM: protein of unknown function DUF883 ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB; hypothetical protein 2296467..2296763 Variovorax paradoxus S110 7973840 YP_002944055.1 CDS Vapar_2154 NC_012791.1 2296815 2297537 D KEGG: aav:Aave_2453 hypothetical protein; hypothetical protein 2296815..2297537 Variovorax paradoxus S110 7973841 YP_002944056.1 CDS Vapar_2155 NC_012791.1 2297559 2298635 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(2297559..2298635) Variovorax paradoxus S110 7973842 YP_002944057.1 CDS Vapar_2156 NC_012791.1 2298676 2299407 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2298676..2299407 Variovorax paradoxus S110 7973843 YP_002944058.1 CDS Vapar_2157 NC_012791.1 2299447 2300088 R PFAM: glutaredoxin; KEGG: aav:Aave_2457 glutaredoxin; glutaredoxin complement(2299447..2300088) Variovorax paradoxus S110 7973844 YP_002944059.1 CDS Vapar_2158 NC_012791.1 2300119 2302176 R PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: rfr:Rfer_2208 oligopeptidase A; oligopeptidase A complement(2300119..2302176) Variovorax paradoxus S110 7973845 YP_002944060.1 CDS Vapar_2159 NC_012791.1 2302182 2303033 R PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: pna:Pnap_1778 methenyltetrahydrofolate cyclohydrolase; methylenetetrahydrofolate dehydrogenase (NADP(+)) complement(2302182..2303033) Variovorax paradoxus S110 7973846 YP_002944061.1 CDS Vapar_2160 NC_012791.1 2303110 2303742 R PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: dac:Daci_3982 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator complement(2303110..2303742) Variovorax paradoxus S110 7973847 YP_002944062.1 CDS Vapar_2161 NC_012791.1 2303739 2306279 R KEGG: pol:Bpro_2673 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase complement(2303739..2306279) Variovorax paradoxus S110 7973848 YP_002944063.1 CDS aceE NC_012791.1 2306485 2309199 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 2306485..2309199 Variovorax paradoxus S110 7973849 YP_002944064.1 CDS Vapar_2163 NC_012791.1 2309257 2310927 D TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: aav:Aave_2463 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 2309257..2310927 Variovorax paradoxus S110 7973850 YP_002944065.1 CDS Vapar_2164 NC_012791.1 2310924 2311517 D PFAM: 20S proteasome A and subunit betas; KEGG: pna:Pnap_1783 20S proteasome, A and subunit betas; 20S proteasome subunit A and B 2310924..2311517 Variovorax paradoxus S110 7973851 YP_002944066.1 CDS Vapar_2165 NC_012791.1 2311514 2313346 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; biotin/lipoyl attachment domain-containing protein; KEGG: pna:Pnap_1784 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 2311514..2313346 Variovorax paradoxus S110 7973852 YP_002944067.1 CDS Vapar_2166 NC_012791.1 2313435 2314019 R PFAM: NLP/P60 protein; KEGG: dac:Daci_3968 NLP/P60 protein; NLP/P60 protein complement(2313435..2314019) Variovorax paradoxus S110 7973853 YP_002944068.1 CDS Vapar_2167 NC_012791.1 2314312 2315394 D PFAM: glucose sorbosone dehydrogenase; KEGG: pol:Bpro_2666 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 2314312..2315394 Variovorax paradoxus S110 7973854 YP_002944069.1 CDS Vapar_2168 NC_012791.1 2315409 2316206 R KEGG: har:HEAR2872 hypothetical protein; hypothetical protein complement(2315409..2316206) Variovorax paradoxus S110 7973855 YP_002944070.1 CDS Vapar_2169 NC_012791.1 2316290 2316892 D PFAM: isochorismatase hydrolase; KEGG: rfr:Rfer_2323 isochorismatase hydrolase; isochorismatase hydrolase 2316290..2316892 Variovorax paradoxus S110 7973856 YP_002944071.1 CDS prpE NC_012791.1 2317030 2318943 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 2317030..2318943 Variovorax paradoxus S110 7973857 YP_002944072.1 CDS sucA NC_012791.1 2319122 2321998 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2319122..2321998 Variovorax paradoxus S110 7973858 YP_002944073.1 CDS Vapar_2172 NC_012791.1 2322054 2323313 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: dia:Dtpsy_1905 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2322054..2323313 Variovorax paradoxus S110 7973859 YP_002944074.1 CDS Vapar_2173 NC_012791.1 2323328 2324758 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2323328..2324758 Variovorax paradoxus S110 7973860 YP_002944075.1 CDS Vapar_2174 NC_012791.1 2324763 2325863 D PFAM: AFG1-family ATPase; KEGG: aav:Aave_3245 AFG1 family ATPase; AFG1-family ATPase 2324763..2325863 Variovorax paradoxus S110 7973861 YP_002944076.1 CDS Vapar_2175 NC_012791.1 2325860 2326531 D KEGG: pol:Bpro_2620 hypothetical protein; hypothetical protein 2325860..2326531 Variovorax paradoxus S110 7973862 YP_002944077.1 CDS Vapar_2176 NC_012791.1 2326566 2327333 R SMART: protein phosphatase 2C domain protein; KEGG: dia:Dtpsy_1901 protein serine/threonine phosphatase; protein serine/threonine phosphatase complement(2326566..2327333) Variovorax paradoxus S110 7973863 YP_002944078.1 CDS Vapar_2177 NC_012791.1 2327442 2327645 D PFAM: protein of unknown function DUF465; KEGG: pol:Bpro_2618 protein of unknown function DUF465; hypothetical protein 2327442..2327645 Variovorax paradoxus S110 7973864 YP_002944079.1 CDS Vapar_2178 NC_012791.1 2327642 2329699 D SMART: helicase c2; KEGG: pol:Bpro_2617 helicase C2; helicase c2 2327642..2329699 Variovorax paradoxus S110 7973865 YP_002944080.1 CDS Vapar_2179 NC_012791.1 2329751 2330557 R TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: rfr:Rfer_2315 transmembrane protein; outer membrane assembly lipoprotein YfiO complement(2329751..2330557) Variovorax paradoxus S110 7973866 YP_002944081.1 CDS Vapar_2180 NC_012791.1 2330614 2331597 D TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: aav:Aave_1417 ribosomal large subunit pseudouridine synthase D; RluA family pseudouridine synthase 2330614..2331597 Variovorax paradoxus S110 7973867 YP_002944082.1 CDS Vapar_2181 NC_012791.1 2331725 2332570 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: aav:Aave_1418 condensin subunit ScpB; chromosome segregation and condensation protein ScpB 2331725..2332570 Variovorax paradoxus S110 7973868 YP_002944083.1 CDS Vapar_2182 NC_012791.1 2332567 2334381 D PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: pna:Pnap_1867 pseudouridine synthase; pseudouridine synthase 2332567..2334381 Variovorax paradoxus S110 7973869 YP_002944084.1 CDS Vapar_2183 NC_012791.1 2334533 2334958 D KEGG: cti:RALTA_A1913 nucleoside diphosphate kinase (NDK) (NDP kinase); PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 2334533..2334958 Variovorax paradoxus S110 7973870 YP_002944085.1 CDS Vapar_2184 NC_012791.1 2334980 2336128 D TIGRFAM:radical SAM protein; PFAM: radical SAM domain protein; KEGG: aav:Aave_1421 radical SAM protein; Cfr family radical SAM protein 2334980..2336128 Variovorax paradoxus S110 7973871 YP_002944086.1 CDS Vapar_2185 NC_012791.1 2336133 2336990 D KEGG: pol:Bpro_2610 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 2336133..2336990 Variovorax paradoxus S110 7973872 YP_002944087.1 CDS Vapar_2186 NC_012791.1 2336983 2337951 D KEGG: dac:Daci_5020 hypothetical protein; hypothetical protein 2336983..2337951 Variovorax paradoxus S110 7973873 YP_002944088.1 CDS ispG NC_012791.1 2337948 2339228 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2337948..2339228 Variovorax paradoxus S110 7973874 YP_002944089.1 CDS hisS NC_012791.1 2339241 2340563 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2339241..2340563 Variovorax paradoxus S110 7973875 YP_002944090.1 CDS Vapar_2189 NC_012791.1 2340569 2341261 D KEGG: pna:Pnap_1874 hypothetical protein; hypothetical protein 2340569..2341261 Variovorax paradoxus S110 7973876 YP_002944091.1 CDS Vapar_2190 NC_012791.1 2341269 2342411 D TIGRFAM: outer membrane assembly lipoprotein YfgL; SMART: pyrrolo-quinoline quinone; KEGG: pol:Bpro_2605 pyrrolo-quinoline quinone; outer membrane assembly lipoprotein YfgL 2341269..2342411 Variovorax paradoxus S110 7973877 YP_002944092.1 CDS engA NC_012791.1 2342460 2343803 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2342460..2343803 Variovorax paradoxus S110 7973878 YP_002944093.1 CDS Vapar_2192 NC_012791.1 2343968 2344213 D TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: rfr:Rfer_2302 host factor Hfq; RNA chaperone Hfq 2343968..2344213 Variovorax paradoxus S110 7969906 YP_002944094.1 CDS Vapar_2193 NC_012791.1 2344266 2345435 D TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: aav:Aave_1430 GTP-binding protein; GTP-binding proten HflX 2344266..2345435 Variovorax paradoxus S110 7969907 YP_002944095.1 CDS Vapar_2194 NC_012791.1 2345510 2346880 D KEGG: aav:Aave_1431 HflK protein; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein; HflK protein 2345510..2346880 Variovorax paradoxus S110 7969908 YP_002944096.1 CDS Vapar_2195 NC_012791.1 2346897 2347802 D KEGG: pna:Pnap_1880 HflC protein; TIGRFAM: HflC protein; PFAM: band 7 protein; SMART: band 7 protein; HflC protein 2346897..2347802 Variovorax paradoxus S110 7969909 YP_002944097.1 CDS Vapar_2196 NC_012791.1 2347823 2348011 D KEGG: rfr:Rfer_2298 hypothetical protein; hypothetical protein 2347823..2348011 Variovorax paradoxus S110 7969910 YP_002944098.1 CDS Vapar_2197 NC_012791.1 2348055 2349215 D TIGRFAM: histidyl-tRNA synthetase 2; PFAM: tRNA synthetase class II (G H P and S); KEGG: ajs:Ajs_1180 tRNA synthetase, class II (G, H, P and S); histidyl-tRNA synthetase 2 2348055..2349215 Variovorax paradoxus S110 7969911 YP_002944099.1 CDS Vapar_2198 NC_012791.1 2349239 2350570 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2349239..2350570 Variovorax paradoxus S110 7969912 YP_002944100.1 CDS Vapar_2199 NC_012791.1 2350590 2351114 D PFAM: phosphoribosyltransferase; KEGG: aav:Aave_1435 phosphoribosyltransferase; phosphoribosyltransferase 2350590..2351114 Variovorax paradoxus S110 7969913 YP_002944101.1 CDS Vapar_2200 NC_012791.1 2351298 2351855 D KEGG: azo:azo3051 hypothetical protein; hypothetical protein 2351298..2351855 Variovorax paradoxus S110 7969914 YP_002944102.1 CDS Vapar_2201 NC_012791.1 2351875 2352327 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ade:Adeh_2482 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2351875..2352327) Variovorax paradoxus S110 7969915 YP_002944103.1 CDS Vapar_2202 NC_012791.1 2352393 2353256 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ank:AnaeK_1375 AraC family transcriptional regulator; AraC family transcriptional regulator complement(2352393..2353256) Variovorax paradoxus S110 7969916 YP_002944104.1 CDS Vapar_2203 NC_012791.1 2353332 2354525 D TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: dia:Dtpsy_1601 Cys/Met metabolism pyridoxal-phosphate-dependent protein; cystathionine beta-lyase 2353332..2354525 Variovorax paradoxus S110 7969917 YP_002944105.1 CDS Vapar_2204 NC_012791.1 2354639 2354842 D KEGG: rfr:Rfer_2230 hypothetical protein; hypothetical protein 2354639..2354842 Variovorax paradoxus S110 7969918 YP_002944106.1 CDS Vapar_2205 NC_012791.1 2354918 2355475 R PFAM: lipolytic protein G-D-S-L family; KEGG: dia:Dtpsy_1603 lipolytic protein G-D-S-L family; Arylesterase complement(2354918..2355475) Variovorax paradoxus S110 7969919 YP_002944107.1 CDS Vapar_2206 NC_012791.1 2355597 2356319 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aav:Aave_3019 ABC transporter-related protein; ABC transporter 2355597..2356319 Variovorax paradoxus S110 7969920 YP_002944108.1 CDS Vapar_2207 NC_012791.1 2356316 2357296 D KEGG: smt:Smal_2565 conserved hypothetical protein-transmembrane prediction; hypothetical protein 2356316..2357296 Variovorax paradoxus S110 7969921 YP_002944109.1 CDS Vapar_2208 NC_012791.1 2357330 2358076 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: pol:Bpro_3029 RNA methyltransferase TrmH, group 3; TrmH family RNA methyltransferase 2357330..2358076 Variovorax paradoxus S110 7969922 YP_002944110.1 CDS Vapar_2209 NC_012791.1 2358107 2358277 R KEGG: pol:Bpro_3012 hypothetical protein; hypothetical protein complement(2358107..2358277) Variovorax paradoxus S110 7969923 YP_002944111.1 CDS Vapar_2210 NC_012791.1 2358388 2358975 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pae:PA1884 transcriptional regulator; XRE family transcriptional regulator complement(2358388..2358975) Variovorax paradoxus S110 7969924 YP_002944112.1 CDS Vapar_2211 NC_012791.1 2359037 2359558 D PFAM: GCN5-related N-acetyltransferase; KEGG: bac:BamMC406_1028 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferaser 2359037..2359558 Variovorax paradoxus S110 7969925 YP_002944113.1 CDS Vapar_2212 NC_012791.1 2359569 2360045 R KEGG: dac:Daci_2822 hypothetical protein; hypothetical protein complement(2359569..2360045) Variovorax paradoxus S110 7969926 YP_002944114.1 CDS Vapar_2213 NC_012791.1 2360056 2361024 R PFAM: aldo/keto reductase; KEGG: aav:Aave_3016 aldo/keto reductase; aldo/keto reductase complement(2360056..2361024) Variovorax paradoxus S110 7969927 YP_002944115.1 CDS Vapar_2214 NC_012791.1 2361055 2361663 R PFAM: Chromate transporter; KEGG: rfr:Rfer_2757 chromate transporter; Chromate transporter complement(2361055..2361663) Variovorax paradoxus S110 7969928 YP_002944116.1 CDS Vapar_2215 NC_012791.1 2361660 2362250 R PFAM: Chromate transporter; KEGG: vei:Veis_3786 chromate transporter; Chromate transporter complement(2361660..2362250) Variovorax paradoxus S110 7969929 YP_002944117.1 CDS Vapar_2216 NC_012791.1 2362339 2363250 D TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: aav:Aave_4029 ribonuclease BN; ribonuclease BN 2362339..2363250 Variovorax paradoxus S110 7969930 YP_002944118.1 CDS Vapar_2217 NC_012791.1 2363263 2363814 R PFAM: protein of unknown function DUF924; KEGG: bbr:BB2250 hypothetical protein; hypothetical protein complement(2363263..2363814) Variovorax paradoxus S110 7969931 YP_002944119.1 CDS Vapar_2218 NC_012791.1 2363931 2364380 D PFAM: CHRD domain containing protein; SMART: CHRD domain containing protein; KEGG: pna:Pnap_1896 CHRD domain-containing protein; CHRD domain containing protein 2363931..2364380 Variovorax paradoxus S110 7969932 YP_002944120.1 CDS Vapar_2219 NC_012791.1 2364440 2365651 D PFAM: patatin; KEGG: ajs:Ajs_1865 patatin; patatin 2364440..2365651 Variovorax paradoxus S110 7969933 YP_002944121.1 CDS Vapar_2220 NC_012791.1 2365709 2366491 D catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 2365709..2366491 Variovorax paradoxus S110 7969934 YP_002944122.1 CDS Vapar_2221 NC_012791.1 2366617 2367624 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3011 twin-arginine translocation pathway signal; hypothetical protein 2366617..2367624 Variovorax paradoxus S110 7969935 YP_002944123.1 CDS Vapar_2222 NC_012791.1 2367668 2368141 D KEGG: pol:Bpro_3010 hypothetical protein; hypothetical protein 2367668..2368141 Variovorax paradoxus S110 7969936 YP_002944124.1 CDS Vapar_2223 NC_012791.1 2368158 2369666 D PFAM: protein of unknown function DUF112 transmembrane; KEGG: pol:Bpro_3009 protein of unknown function DUF112, transmembrane; hypothetical protein 2368158..2369666 Variovorax paradoxus S110 7969937 YP_002944125.1 CDS Vapar_2224 NC_012791.1 2369653 2370615 R PFAM: regulatory protein MarR; GCN5-related N-acetyltransferase; SMART: regulatory protein MarR; KEGG: pol:Bpro_3019 MarR family transcriptional regulator with acetyltransferase activity; MarR family transcriptional regulator with acetyltransferase activity complement(2369653..2370615) Variovorax paradoxus S110 7969938 YP_002944126.1 CDS Vapar_2225 NC_012791.1 2370767 2373154 D PFAM: radical SAM protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pol:Bpro_2995 radical SAM; radical SAM protein 2370767..2373154 Variovorax paradoxus S110 7969939 YP_002944127.1 CDS Vapar_2226 NC_012791.1 2373160 2373522 R PFAM: protein of unknown function DUF1294; KEGG: pna:Pnap_1898 hypothetical protein; hypothetical protein complement(2373160..2373522) Variovorax paradoxus S110 7969940 YP_002944128.1 CDS Vapar_2227 NC_012791.1 2373601 2374596 D KEGG: rfr:Rfer_4059 signal peptide protein; signal peptide protein 2373601..2374596 Variovorax paradoxus S110 7969941 YP_002944129.1 CDS Vapar_2228 NC_012791.1 2374727 2376826 D KEGG: dac:Daci_3681 hypothetical protein; hypothetical protein 2374727..2376826 Variovorax paradoxus S110 7969942 YP_002944130.1 CDS Vapar_2229 NC_012791.1 2376848 2377726 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pna:Pnap_1900 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(2376848..2377726) Variovorax paradoxus S110 7969943 YP_002944131.1 CDS Vapar_2230 NC_012791.1 2377874 2378776 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO2577 oxidoreductase; short-chain dehydrogenase/reductase SDR 2377874..2378776 Variovorax paradoxus S110 7969944 YP_002944132.1 CDS Vapar_2231 NC_012791.1 2378818 2379426 D PFAM: glutathione S-transferase domain; KEGG: rme:Rmet_2587 hypothetical protein; glutathione S-transferase domain-containing protein 2378818..2379426 Variovorax paradoxus S110 7969945 YP_002944133.1 CDS Vapar_2232 NC_012791.1 2379432 2379821 R KEGG: eba:ebA2554 hypothetical protein; hypothetical protein complement(2379432..2379821) Variovorax paradoxus S110 7969946 YP_002944134.1 CDS Vapar_2233 NC_012791.1 2379852 2381711 R PFAM: protein of unknown function DUF839; KEGG: mpt:Mpe_A3526 hypothetical protein; hypothetical protein complement(2379852..2381711) Variovorax paradoxus S110 7969947 YP_002944135.1 CDS Vapar_2234 NC_012791.1 2381804 2382631 D PFAM: enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_0365 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2381804..2382631 Variovorax paradoxus S110 7969948 YP_002944136.1 CDS Vapar_2235 NC_012791.1 2382889 2383200 D hypothetical protein 2382889..2383200 Variovorax paradoxus S110 7969949 YP_002944137.1 CDS Vapar_2236 NC_012791.1 2383231 2384376 R PFAM: alanine racemase domain protein; KEGG: sal:Sala_3175 threonine aldolase family protein; alanine racemase domain-containing protein complement(2383231..2384376) Variovorax paradoxus S110 7969950 YP_002944138.1 CDS Vapar_2237 NC_012791.1 2384463 2384837 R hypothetical protein complement(2384463..2384837) Variovorax paradoxus S110 7969951 YP_002944139.1 CDS Vapar_2238 NC_012791.1 2384867 2385145 R hypothetical protein complement(2384867..2385145) Variovorax paradoxus S110 7969952 YP_002944140.1 CDS Vapar_2239 NC_012791.1 2385311 2385514 R hypothetical protein complement(2385311..2385514) Variovorax paradoxus S110 7969953 YP_002944141.1 CDS Vapar_2240 NC_012791.1 2386480 2387472 D KEGG: hch:HCH_01177 hypothetical protein; hypothetical protein 2386480..2387472 Variovorax paradoxus S110 7969954 YP_002944142.1 CDS Vapar_2241 NC_012791.1 2387555 2388250 D KEGG: pol:Bpro_1554 hypothetical protein; hypothetical protein 2387555..2388250 Variovorax paradoxus S110 7969955 YP_002944143.1 CDS Vapar_2243 NC_012791.1 2388850 2389401 D KEGG: eba:ebB3 hypothetical protein; hypothetical protein 2388850..2389401 Variovorax paradoxus S110 7969957 YP_002944144.1 CDS Vapar_2244 NC_012791.1 2389385 2391751 D PFAM: type III restriction protein res subunit; DNA primase small subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; KEGG: tmz:Tmz1t_0307 type III restriction protein res subunit; type III restriction protein res subunit 2389385..2391751 Variovorax paradoxus S110 7969958 YP_002944145.1 CDS Vapar_2245 NC_012791.1 2391930 2392448 R KEGG: azo:azo2032 hypothetical protein; hypothetical protein complement(2391930..2392448) Variovorax paradoxus S110 7969959 YP_002944146.1 CDS Vapar_2246 NC_012791.1 2392460 2392813 R KEGG: dac:Daci_2729 helix-turn-helix domain-containing protein; hypothetical protein complement(2392460..2392813) Variovorax paradoxus S110 7969960 YP_002944147.1 CDS Vapar_2247 NC_012791.1 2393039 2393611 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: azc:AZC_1503 transcriptional regulator; XRE family transcriptional regulator 2393039..2393611 Variovorax paradoxus S110 7969961 YP_002944148.1 CDS Vapar_2248 NC_012791.1 2394566 2394880 D hypothetical protein 2394566..2394880 Variovorax paradoxus S110 7969962 YP_002944149.1 CDS Vapar_2249 NC_012791.1 2394873 2395979 D PFAM: Relaxase/mobilization nuclease family protein; KEGG: bbt:BBta_p0017 hypothetical protein; Relaxase/mobilization nuclease family protein 2394873..2395979 Variovorax paradoxus S110 7969963 YP_002944150.1 CDS Vapar_2251 NC_012791.1 2397347 2398273 R hypothetical protein complement(2397347..2398273) Variovorax paradoxus S110 7969965 YP_002944151.1 CDS Vapar_2254 NC_012791.1 2399769 2400173 R PFAM: protein of unknown function DUF1486; KEGG: bvi:Bcep1808_5129 hypothetical protein; hypothetical protein complement(2399769..2400173) Variovorax paradoxus S110 7969968 YP_002944152.1 CDS Vapar_2255 NC_012791.1 2400582 2400848 D PFAM: prophage CP4-57 regulator; KEGG: ajs:Ajs_1859 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 2400582..2400848 Variovorax paradoxus S110 7969969 YP_002944153.1 CDS Vapar_2258 NC_012791.1 2403297 2404388 D PFAM: Integrase catalytic region; KEGG: mpt:Mpe_B0526 ISRSO5-transposase protein; integrase catalytic subunit 2403297..2404388 Variovorax paradoxus S110 7969972 YP_002944154.1 CDS Vapar_2259 NC_012791.1 2404769 2404951 D PFAM: export protein FliQ family 3; KEGG: cvi:CV_3125 flagellar biosynthetic protein FliQ; export protein FliQ family 3 2404769..2404951 Variovorax paradoxus S110 7969973 YP_002944155.1 CDS Vapar_2260 NC_012791.1 2405077 2405796 D PFAM: type III secretion system inner membrane R protein; KEGG: hch:HCH_04089 flagellar biosynthesis pathway, component FliR; type III secretion system inner membrane R protein 2405077..2405796 Variovorax paradoxus S110 7969974 YP_002944156.1 CDS Vapar_2261 NC_012791.1 2405796 2406893 D PFAM: type III secretion exporter; KEGG: mgm:Mmc1_0011 flagellar biosynthetic protein FlhB; type III secretion exporter 2405796..2406893 Variovorax paradoxus S110 7969975 YP_002944157.1 CDS Vapar_2262 NC_012791.1 2406890 2408977 D TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: hypothetical protein; flagellar biosynthesis protein FlhA 2406890..2408977 Variovorax paradoxus S110 7969976 YP_002944158.1 CDS Vapar_2263 NC_012791.1 2408997 2409776 D KEGG: hypothetical protein; hypothetical protein 2408997..2409776 Variovorax paradoxus S110 7969977 YP_002944159.1 CDS Vapar_2264 NC_012791.1 2409820 2410608 D TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: gur:Gura_4106 flagellar basal body rod protein FlgG; flagellar basal-body rod protein FlgG 2409820..2410608 Variovorax paradoxus S110 7969978 YP_002944160.1 CDS Vapar_2265 NC_012791.1 2410592 2411647 D TIGRFAM: flagella basal body P-ring formation protein FlgA; KEGG: dps:DP2682 flagellar protein (FlgA); flagella basal body P-ring formation protein FlgA 2410592..2411647 Variovorax paradoxus S110 7969979 YP_002944161.1 CDS Vapar_2266 NC_012791.1 2411644 2412249 D PFAM: flagellar L-ring protein; KEGG: hypothetical protein; flagellar L-ring protein 2411644..2412249 Variovorax paradoxus S110 7969980 YP_002944162.1 CDS flgI NC_012791.1 2412249 2413400 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 2412249..2413400 Variovorax paradoxus S110 7969981 YP_002944163.1 CDS Vapar_2268 NC_012791.1 2413456 2413839 D KEGG: hch:HCH_04081 flagellar basal body protein; flagellar basal body protein 2413456..2413839 Variovorax paradoxus S110 7969982 YP_002944164.1 CDS Vapar_2269 NC_012791.1 2413842 2414303 D TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: hch:HCH_04080 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 2413842..2414303 Variovorax paradoxus S110 7969983 YP_002944165.1 CDS Vapar_2270 NC_012791.1 2414300 2414665 D PFAM: flagellar hook-basal body complex protein FliE; KEGG: geo:Geob_0493 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex protein FliE 2414300..2414665 Variovorax paradoxus S110 7969984 YP_002944166.1 CDS Vapar_2271 NC_012791.1 2414662 2416170 D TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; flagellar M-ring domain protein; KEGG: hch:HCH_04078 flagellar M-ring protein FliF; flagellar M-ring protein FliF 2414662..2416170 Variovorax paradoxus S110 7969985 YP_002944167.1 CDS Vapar_2272 NC_012791.1 2416170 2416799 D KEGG: similar to brain protein 16; hypothetical protein 2416170..2416799 Variovorax paradoxus S110 7969986 YP_002944168.1 CDS Vapar_2273 NC_012791.1 2416808 2417698 D PFAM: flagellar assembly protein FliH; KEGG: hypothetical protein; flagellar assembly protein FliH 2416808..2417698 Variovorax paradoxus S110 7970721 YP_002944169.1 CDS Vapar_2274 NC_012791.1 2417700 2419082 D KEGG: bha:BH2455 flagellum-specific ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA; FliI/YscN family ATPase 2417700..2419082 Variovorax paradoxus S110 7971129 YP_002944170.1 CDS Vapar_2275 NC_012791.1 2419079 2419591 D KEGG: similar to coiled-coil domain containing 88; hypothetical protein 2419079..2419591 Variovorax paradoxus S110 7971130 YP_002944171.1 CDS Vapar_2276 NC_012791.1 2419588 2420424 D KEGG: dac:Daci_1499 hypothetical protein; hypothetical protein 2419588..2420424 Variovorax paradoxus S110 7971131 YP_002944172.1 CDS Vapar_2277 NC_012791.1 2420424 2420825 D PFAM: flagellar hook capping protein; KEGG: hch:HCH_04072 flagellar hook capping protein; flagellar hook capping protein 2420424..2420825 Variovorax paradoxus S110 7971132 YP_002944173.1 CDS Vapar_2278 NC_012791.1 2420858 2422045 D PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: sdn:Sden_0060 protein of unknown function DUF1078-like protein; hypothetical protein 2420858..2422045 Variovorax paradoxus S110 7971133 YP_002944174.1 CDS Vapar_2279 NC_012791.1 2422042 2423010 D PFAM: surface presentation of antigens (SPOA) protein; KEGG: ank:AnaeK_2798 response regulator receiver; surface presentation of antigens (SPOA) protein 2422042..2423010 Variovorax paradoxus S110 7971134 YP_002944175.1 CDS Vapar_2280 NC_012791.1 2423007 2423462 D PFAM: surface presentation of antigens (SPOA) protein; KEGG: hch:HCH_04069 flagellar motor switch protein; surface presentation of antigens (SPOA) protein 2423007..2423462 Variovorax paradoxus S110 7971135 YP_002944176.1 CDS Vapar_2281 NC_012791.1 2423466 2424011 D hypothetical protein 2423466..2424011 Variovorax paradoxus S110 7971136 YP_002944177.1 CDS Vapar_2282 NC_012791.1 2424008 2424988 D TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: hch:HCH_04067 flagellar biosynthesis protein FliP; flagellar biosynthetic protein FliP 2424008..2424988 Variovorax paradoxus S110 7971137 YP_002944178.1 CDS Vapar_2283 NC_012791.1 2425075 2425893 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: aca:ACP_0251 flagellar operon sigma factor FliA; FliA/WhiG subfamily RNA polymerase sigma-28 subunit 2425075..2425893 Variovorax paradoxus S110 7971138 YP_002944179.1 CDS Vapar_2284 NC_012791.1 2425933 2427201 D PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: hch:HCH_04092 hypotheticalprotein; hypothetical protein 2425933..2427201 Variovorax paradoxus S110 7971139 YP_002944180.1 CDS Vapar_2285 NC_012791.1 2427223 2427696 R KEGG: hypothetical protein; hypothetical protein complement(2427223..2427696) Variovorax paradoxus S110 7971140 YP_002944181.1 CDS Vapar_2286 NC_012791.1 2427748 2428335 R SMART: hypothetical protein; KEGG: hypothetical protein; hypothetical protein complement(2427748..2428335) Variovorax paradoxus S110 7971141 YP_002944182.1 CDS Vapar_2287 NC_012791.1 2428567 2429343 D KEGG: msl:Msil_1011 hypothetical protein; hypothetical protein 2428567..2429343 Variovorax paradoxus S110 7971142 YP_002944183.1 CDS Vapar_2288 NC_012791.1 2429404 2431626 R PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: pnu:Pnuc_0121 hypotheticalprotein; hypothetical protein complement(2429404..2431626) Variovorax paradoxus S110 7971143 YP_002944184.1 CDS Vapar_2289 NC_012791.1 2431786 2432577 R KEGG: bpy:Bphyt_3168 hypothetical protein; hypothetical protein complement(2431786..2432577) Variovorax paradoxus S110 7971144 YP_002944185.1 CDS Vapar_2290 NC_012791.1 2432885 2451703 D KEGG: sdn:Sden_3683 peptidoglycan-binding LysM; TIGRFAM: hypothetical protein; PFAM: peptidoglycan-binding LysM; YD repeat-containing protein; SMART: peptidoglycan-binding LysM; hypothetical protein 2432885..2451703 Variovorax paradoxus S110 7971145 YP_002944186.1 CDS Vapar_2291 NC_012791.1 2452848 2453291 D PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_4532 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2452848..2453291 Variovorax paradoxus S110 7971146 YP_002944187.1 CDS Vapar_2293 NC_012791.1 2453723 2454229 D KEGG: reu:Reut_C6183 transposase IS66; transposase IS66 2453723..2454229 Variovorax paradoxus S110 7971148 YP_002944188.1 CDS Vapar_2294 NC_012791.1 2454357 2454674 D KEGG: sat:SYN_01388 cytoplasmic protein; cytoplasmic protein 2454357..2454674 Variovorax paradoxus S110 7971149 YP_002944189.1 CDS Vapar_2295 NC_012791.1 2454808 2455791 D PFAM: transposase IS4 family protein; KEGG: mpt:Mpe_B0605 ISRSO18-transposase protein; transposase IS4 family protein 2454808..2455791 Variovorax paradoxus S110 7971150 YP_002944190.1 CDS Vapar_2296 NC_012791.1 2455858 2456781 D KEGG: pau:PA14_43100 rhs family protein; hypothetical protein 2455858..2456781 Variovorax paradoxus S110 7971151 YP_002944191.1 CDS Vapar_2297 NC_012791.1 2456793 2457278 D hypothetical protein 2456793..2457278 Variovorax paradoxus S110 7971152 YP_002944192.1 CDS Vapar_2298 NC_012791.1 2457271 2457855 R KEGG: hypothetical protein; hypothetical protein complement(2457271..2457855) Variovorax paradoxus S110 7971153 YP_002944193.1 CDS Vapar_2299 NC_012791.1 2457940 2458314 R hypothetical protein complement(2457940..2458314) Variovorax paradoxus S110 7971154 YP_002944194.1 CDS Vapar_2300 NC_012791.1 2458314 2458721 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: eca:ECA3391 prophage regulatory ptotein; XRE family transcriptional regulator complement(2458314..2458721) Variovorax paradoxus S110 7971155 YP_002944195.1 CDS Vapar_2301 NC_012791.1 2458758 2459969 R PFAM: integrase family protein; KEGG: pna:Pnap_2643 phage integrase family protein; integrase family protein complement(2458758..2459969) Variovorax paradoxus S110 7971156 YP_002944196.1 CDS Vapar_2303 NC_012791.1 2460786 2461490 R PFAM: glutathione S-transferase domain; KEGG: lch:Lcho_2602 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein complement(2460786..2461490) Variovorax paradoxus S110 7971160 YP_002944197.1 CDS Vapar_2304 NC_012791.1 2461594 2463312 R KEGG: mpt:Mpe_A0012 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: cyclic nucleotide-binding; cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2461594..2463312) Variovorax paradoxus S110 7971161 YP_002944198.1 CDS Vapar_2305 NC_012791.1 2463418 2464278 D KEGG: rfr:Rfer_2028 hypothetical protein; hypothetical protein 2463418..2464278 Variovorax paradoxus S110 7971162 YP_002944199.1 CDS Vapar_2306 NC_012791.1 2464275 2466593 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2464275..2466593 Variovorax paradoxus S110 7971163 YP_002944200.1 CDS Vapar_2307 NC_012791.1 2466613 2467074 D PFAM: phosphoglycerate mutase; KEGG: pol:Bpro_2247 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase SixA 2466613..2467074 Variovorax paradoxus S110 7971164 YP_002944201.1 CDS Vapar_2308 NC_012791.1 2467175 2468002 D KEGG: cvi:CV_2702 hypothetical protein; hypothetical protein 2467175..2468002 Variovorax paradoxus S110 7971165 YP_002944202.1 CDS Vapar_2309 NC_012791.1 2468170 2469021 D KEGG: cvi:CV_2702 hypothetical protein; hypothetical protein 2468170..2469021 Variovorax paradoxus S110 7971166 YP_002944203.1 CDS Vapar_2310 NC_012791.1 2469058 2470578 R PFAM: Ppx/GppA phosphatase; KEGG: pol:Bpro_2249 Ppx/GppA phosphatase; Ppx/GppA phosphatase complement(2469058..2470578) Variovorax paradoxus S110 7971167 YP_002944204.1 CDS Vapar_2311 NC_012791.1 2470833 2471870 D TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pol:Bpro_2252 periplasmic phosphate binding protein; phosphate ABC transporter periplasmic phosphate-binding protein 2470833..2471870 Variovorax paradoxus S110 7971168 YP_002944205.1 CDS Vapar_2312 NC_012791.1 2471902 2472981 D TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2253 phosphate ABC transporter permease protein PstC; phosphate ABC transporter inner membrane protein 2471902..2472981 Variovorax paradoxus S110 7971169 YP_002944206.1 CDS pstA NC_012791.1 2472978 2473862 D Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 2472978..2473862 Variovorax paradoxus S110 7971170 YP_002944207.1 CDS Vapar_2314 NC_012791.1 2473883 2474662 D KEGG: dac:Daci_4915 phosphate ABC transporter ATPase subunit; TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA; phosphate ABC transporter ATPase 2473883..2474662 Variovorax paradoxus S110 7971171 YP_002944208.1 CDS Vapar_2315 NC_012791.1 2474679 2475380 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pol:Bpro_2256 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 2474679..2475380 Variovorax paradoxus S110 7971172 YP_002944209.1 CDS Vapar_2316 NC_012791.1 2475411 2476103 D KEGG: ajs:Ajs_2367 two component transcriptional regulator; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; winged helix family two component transcriptional regulator PhoB 2475411..2476103 Variovorax paradoxus S110 7971173 YP_002944210.1 CDS Vapar_2317 NC_012791.1 2476190 2477485 D KEGG: pol:Bpro_2258 multi-sensor signal transduction histidine kinase; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 2476190..2477485 Variovorax paradoxus S110 7971174 YP_002944211.1 CDS Vapar_2318 NC_012791.1 2477474 2478817 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dia:Dtpsy_1493 MATE efflux family protein; MATE efflux family protein complement(2477474..2478817) Variovorax paradoxus S110 7971175 YP_002944212.1 CDS Vapar_2319 NC_012791.1 2478821 2480548 R KEGG: rfr:Rfer_2901 inner membrane transmembrane protein; inner membrane transmembrane protein complement(2478821..2480548) Variovorax paradoxus S110 7971176 YP_002944213.1 CDS Vapar_2320 NC_012791.1 2480634 2480903 R TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: aav:Aave_2635 50S ribosomal protein L31P; 50S ribosomal protein L31 complement(2480634..2480903) Variovorax paradoxus S110 7971177 YP_002944214.1 CDS Vapar_2321 NC_012791.1 2481063 2482136 D PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; homoserine dehydrogenase NAD-binding; oxidoreductase domain; KEGG: cko:CKO_01631 oxidoreductase; oxidoreductase domain-containing protein 2481063..2482136 Variovorax paradoxus S110 7971178 YP_002944215.1 CDS rho NC_012791.1 2482188 2483453 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(2482188..2483453) Variovorax paradoxus S110 7971179 YP_002944216.1 CDS Vapar_2323 NC_012791.1 2483636 2483968 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rfr:Rfer_2898 thioredoxin; thioredoxin complement(2483636..2483968) Variovorax paradoxus S110 7971180 YP_002944217.1 CDS Vapar_2324 NC_012791.1 2484127 2486721 D KEGG: ajs:Ajs_2356 exonuclease-like protein; exonuclease-like protein 2484127..2486721 Variovorax paradoxus S110 7971181 YP_002944218.1 CDS Vapar_2325 NC_012791.1 2486718 2489981 D PFAM: UvrD/REP helicase; KEGG: ajs:Ajs_2355 UvrD/REP helicase; UvrD/REP helicase 2486718..2489981 Variovorax paradoxus S110 7971182 YP_002944219.1 CDS Vapar_2326 NC_012791.1 2489978 2491216 D PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: pna:Pnap_2187 hypothetical protein; hypothetical protein 2489978..2491216 Variovorax paradoxus S110 7971183 YP_002944220.1 CDS Vapar_2327 NC_012791.1 2491297 2493213 D KEGG: bpl:BURPS1106A_1597 ricin-type beta-trefoil lectin domain/galactose oxidase domain-containing protein; PFAM: Domain of unknown function DUF1929; Kelch repeat protein; Kelch repeat-containing protein; SMART: Kelch repeat-containing protein; Galactose oxidase 2491297..2493213 Variovorax paradoxus S110 7971184 YP_002944221.1 CDS Vapar_2328 NC_012791.1 2493246 2493695 D KEGG: bmn:BMA10247_0649 hypothetical protein; hypothetical protein 2493246..2493695 Variovorax paradoxus S110 7971185 YP_002944222.1 CDS Vapar_2329 NC_012791.1 2493692 2494300 D KEGG: bpm:BURPS1710b_A0714 hypothetical protein; hypothetical protein 2493692..2494300 Variovorax paradoxus S110 7971186 YP_002944223.1 CDS Vapar_2330 NC_012791.1 2494649 2496511 D KEGG: dia:Dtpsy_1507 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 2494649..2496511 Variovorax paradoxus S110 7971188 YP_002944224.1 CDS Vapar_2331 NC_012791.1 2496609 2496941 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_2645 hypothetical protein; hypothetical protein 2496609..2496941 Variovorax paradoxus S110 7971189 YP_002944225.1 CDS recR NC_012791.1 2496949 2497539 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 2496949..2497539 Variovorax paradoxus S110 7971190 YP_002944226.1 CDS Vapar_2333 NC_012791.1 2497592 2497984 D KEGG: dia:Dtpsy_1510 membrane protein-like protein; hypothetical protein 2497592..2497984 Variovorax paradoxus S110 7971191 YP_002944227.1 CDS Vapar_2334 NC_012791.1 2498155 2499189 D KEGG: pol:Bpro_2272 signal peptide protein; signal peptide protein 2498155..2499189 Variovorax paradoxus S110 7971192 YP_002944228.1 CDS Vapar_2335 NC_012791.1 2499264 2500109 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_2273 ABC transporter; ABC transporter 2499264..2500109 Variovorax paradoxus S110 7971193 YP_002944229.1 CDS Vapar_2336 NC_012791.1 2500106 2500939 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2274 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2500106..2500939 Variovorax paradoxus S110 7971194 YP_002944230.1 CDS Vapar_2337 NC_012791.1 2500978 2502594 R PFAM: lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic; lytic transglycosylase complement(2500978..2502594) Variovorax paradoxus S110 7971195 YP_002944231.1 CDS Vapar_2338 NC_012791.1 2502591 2503370 R KEGG: vei:Veis_0591 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase complement(2502591..2503370) Variovorax paradoxus S110 7971196 YP_002944232.1 CDS Vapar_2339 NC_012791.1 2503390 2504145 D PFAM: methyltransferase type 11; KEGG: pna:Pnap_1679 methyltransferase type 11; type 11 methyltransferase 2503390..2504145 Variovorax paradoxus S110 7971197 YP_002944233.1 CDS rnhA NC_012791.1 2504201 2504650 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2504201..2504650 Variovorax paradoxus S110 7971198 YP_002944234.1 CDS Vapar_2341 NC_012791.1 2504685 2505995 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: dia:Dtpsy_1971 molybdenum cofactor synthesis domain protein; molybdenum cofactor synthesis domain-containing protein complement(2504685..2505995) Variovorax paradoxus S110 7971199 YP_002944235.1 CDS mobA NC_012791.1 2505992 2506642 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(2505992..2506642) Variovorax paradoxus S110 7971200 YP_002944236.1 CDS Vapar_2343 NC_012791.1 2506639 2507790 R KEGG: rfr:Rfer_1468 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A complement(2506639..2507790) Variovorax paradoxus S110 7971201 YP_002944237.1 CDS Vapar_2344 NC_012791.1 2507892 2509325 R PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2290 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase complement(2507892..2509325) Variovorax paradoxus S110 7971202 YP_002944238.1 CDS Vapar_2345 NC_012791.1 2509346 2509906 R PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: bmj:BMULJ_01129 thioredoxin-dependent thiol peroxidase; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(2509346..2509906) Variovorax paradoxus S110 7971203 YP_002944239.1 CDS Vapar_2346 NC_012791.1 2509951 2511525 D PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: rpi:Rpic_4172 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 2509951..2511525 Variovorax paradoxus S110 7971204 YP_002944240.1 CDS Vapar_2347 NC_012791.1 2511535 2512323 D PFAM: fatty acid hydroxylase; KEGG: bpt:Bpet4857 sterol desaturase; fatty acid hydroxylase 2511535..2512323 Variovorax paradoxus S110 7971205 YP_002944241.1 CDS Vapar_2348 NC_012791.1 2512307 2513263 D PFAM: fatty acid desaturase; KEGG: dac:Daci_1691 fatty acid desaturase; fatty acid desaturase 2512307..2513263 Variovorax paradoxus S110 7971206 YP_002944242.1 CDS Vapar_2349 NC_012791.1 2513267 2515210 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 2513267..2515210 Variovorax paradoxus S110 7971207 YP_002944243.1 CDS Vapar_2350 NC_012791.1 2515194 2516078 D KEGG: bpt:Bpet4854 hypothetical protein; hypothetical protein 2515194..2516078 Variovorax paradoxus S110 7971208 YP_002944244.1 CDS Vapar_2351 NC_012791.1 2516111 2516479 D KEGG: pna:Pnap_2414 hypothetical protein; hypothetical protein 2516111..2516479 Variovorax paradoxus S110 7971209 YP_002944245.1 CDS Vapar_2352 NC_012791.1 2516466 2516696 D KEGG: pol:Bpro_2357 hypothetical protein; hypothetical protein 2516466..2516696 Variovorax paradoxus S110 7970395 YP_002944246.1 CDS Vapar_2353 NC_012791.1 2516919 2517500 D hypothetical protein 2516919..2517500 Variovorax paradoxus S110 7970396 YP_002944247.1 CDS Vapar_2354 NC_012791.1 2517494 2518330 R KEGG: aav:Aave_3135 hypothetical protein; hypothetical protein complement(2517494..2518330) Variovorax paradoxus S110 7970397 YP_002944248.1 CDS Vapar_2355 NC_012791.1 2518444 2519058 D PFAM: regulatory protein TetR; KEGG: lch:Lcho_1914 TetR family transcriptional regulator; TetR family transcriptional regulator 2518444..2519058 Variovorax paradoxus S110 7970398 YP_002944249.1 CDS Vapar_2356 NC_012791.1 2519078 2519446 R KEGG: bja:bll2395 hypothetical protein; hypothetical protein complement(2519078..2519446) Variovorax paradoxus S110 7970399 YP_002944250.1 CDS hppA NC_012791.1 2519446 2521974 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(2519446..2521974) Variovorax paradoxus S110 7970400 YP_002944251.1 CDS Vapar_2358 NC_012791.1 2522229 2522756 D PFAM: inorganic pyrophosphatase; KEGG: vei:Veis_3002 inorganic diphosphatase; inorganic diphosphatase 2522229..2522756 Variovorax paradoxus S110 7970401 YP_002944252.1 CDS Vapar_2359 NC_012791.1 2522787 2523968 R PFAM: protein of unknown function DUF482; KEGG: pna:Pnap_1708 hypothetical protein; hypothetical protein complement(2522787..2523968) Variovorax paradoxus S110 7970402 YP_002944253.1 CDS Vapar_2360 NC_012791.1 2523988 2525682 D TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; ExsB family protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_2309 NAD+ synthetase; NAD+ synthetase 2523988..2525682 Variovorax paradoxus S110 7970403 YP_002944254.1 CDS Vapar_2361 NC_012791.1 2525679 2526017 D PFAM: nitrogen regulatory protein P-II; KEGG: pna:Pnap_1710 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 2525679..2526017 Variovorax paradoxus S110 7970404 YP_002944255.1 CDS Vapar_2362 NC_012791.1 2526042 2526632 R PFAM: conserved hypothetical protein; KEGG: dia:Dtpsy_1959 hypothetical protein; hypothetical protein complement(2526042..2526632) Variovorax paradoxus S110 7970405 YP_002944256.1 CDS Vapar_2363 NC_012791.1 2526664 2527071 R PFAM: diacylglycerol kinase; KEGG: pol:Bpro_2312 diacylglycerol kinase; diacylglycerol kinase complement(2526664..2527071) Variovorax paradoxus S110 7970406 YP_002944257.1 CDS Vapar_2364 NC_012791.1 2527068 2527550 R PFAM: RDD domain containing protein; KEGG: ajs:Ajs_1765 RDD domain-containing protein; RDD domain containing protein complement(2527068..2527550) Variovorax paradoxus S110 7970407 YP_002944258.1 CDS Vapar_2365 NC_012791.1 2527649 2528539 R KEGG: ajs:Ajs_1766 transmembrane protein; transmembrane protein complement(2527649..2528539) Variovorax paradoxus S110 7970408 YP_002944259.1 CDS Vapar_2366 NC_012791.1 2528560 2528988 R KEGG: dia:Dtpsy_1955 transmembrane protein; transmembrane protein complement(2528560..2528988) Variovorax paradoxus S110 7970409 YP_002944260.1 CDS Vapar_2367 NC_012791.1 2528985 2529551 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 complement(2528985..2529551) Variovorax paradoxus S110 7970410 YP_002944261.1 CDS Vapar_2368 NC_012791.1 2529836 2531620 D acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 3 catalytic subunit 2529836..2531620 Variovorax paradoxus S110 7970411 YP_002944262.1 CDS ilvH NC_012791.1 2531755 2532246 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2531755..2532246 Variovorax paradoxus S110 7970412 YP_002944263.1 CDS Vapar_2370 NC_012791.1 2532302 2532574 D KEGG: pat:Patl_3324 hypothetical protein; hypothetical protein 2532302..2532574 Variovorax paradoxus S110 7970413 YP_002944264.1 CDS Vapar_2371 NC_012791.1 2532628 2533644 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2532628..2533644 Variovorax paradoxus S110 7970414 YP_002944265.1 CDS Vapar_2372 NC_012791.1 2533830 2534654 D KEGG: vei:Veis_1753 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 2533830..2534654 Variovorax paradoxus S110 7970415 YP_002944266.1 CDS Vapar_2373 NC_012791.1 2534839 2536542 D KEGG: dia:Dtpsy_1949 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase 2534839..2536542 Variovorax paradoxus S110 7970416 YP_002944267.1 CDS Vapar_2374 NC_012791.1 2536604 2538142 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2536604..2538142 Variovorax paradoxus S110 7970417 YP_002944268.1 CDS Vapar_2375 NC_012791.1 2538258 2539442 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: ajs:Ajs_1775 murein-dd-endopeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 2538258..2539442 Variovorax paradoxus S110 7970418 YP_002944269.1 CDS Vapar_2376 NC_012791.1 2539502 2540347 R PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: dia:Dtpsy_1946 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(2539502..2540347) Variovorax paradoxus S110 7970419 YP_002944270.1 CDS Vapar_2377 NC_012791.1 2540378 2541127 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(2540378..2541127) Variovorax paradoxus S110 7970420 YP_002944271.1 CDS aat NC_012791.1 2541124 2541879 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2541124..2541879) Variovorax paradoxus S110 7970421 YP_002944272.1 CDS Vapar_2379 NC_012791.1 2542101 2544431 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: pol:Bpro_3394 xanthine dehydrogenase, molybdenum binding subunit apoprotein; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 2542101..2544431 Variovorax paradoxus S110 7970422 YP_002944273.1 CDS Vapar_2380 NC_012791.1 2544469 2545371 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce0907 AraC family transcriptional regulator; AraC family transcriptional regulator 2544469..2545371 Variovorax paradoxus S110 7970423 YP_002944274.1 CDS Vapar_2381 NC_012791.1 2545446 2545847 D KEGG: pla:Plav_1985 hypothetical protein; hypothetical protein 2545446..2545847 Variovorax paradoxus S110 7970424 YP_002944275.1 CDS Vapar_2382 NC_012791.1 2545844 2547025 R catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase complement(2545844..2547025) Variovorax paradoxus S110 7970425 YP_002944276.1 CDS Vapar_2383 NC_012791.1 2547157 2547927 D KEGG: pol:Bpro_2991 transcriptional regulator, IclR family; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; IclR family transcriptional regulator 2547157..2547927 Variovorax paradoxus S110 7970426 YP_002944277.1 CDS Vapar_2384 NC_012791.1 2547982 2548641 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: aav:Aave_3964 two component transcriptional regulator; winged helix family two component transcriptional regulator 2547982..2548641 Variovorax paradoxus S110 7970427 YP_002944278.1 CDS Vapar_2385 NC_012791.1 2548638 2549966 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rfr:Rfer_3821 periplasmic sensor signal transduction histidine kinase; histidine kinase 2548638..2549966 Variovorax paradoxus S110 7970428 YP_002944279.1 CDS Vapar_2386 NC_012791.1 2550065 2551540 D KEGG: rfr:Rfer_3822 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; protease Do 2550065..2551540 Variovorax paradoxus S110 7970429 YP_002944280.1 CDS Vapar_2387 NC_012791.1 2551564 2551866 D KEGG: pnu:Pnuc_0581 hypothetical protein; hypothetical protein 2551564..2551866 Variovorax paradoxus S110 7970430 YP_002944281.1 CDS Vapar_2388 NC_012791.1 2551887 2552096 R hypothetical protein complement(2551887..2552096) Variovorax paradoxus S110 7970431 YP_002944282.1 CDS Vapar_2389 NC_012791.1 2552314 2552472 R hypothetical protein complement(2552314..2552472) Variovorax paradoxus S110 7970432 YP_002944283.1 CDS Vapar_2390 NC_012791.1 2552687 2552998 D KEGG: pol:Bpro_1534 hypothetical protein; hypothetical protein 2552687..2552998 Variovorax paradoxus S110 7970433 YP_002944284.1 CDS Vapar_2391 NC_012791.1 2553011 2553394 D KEGG: pol:Bpro_1533 transcription regulator containing helix turn helix domain; transcription regulator with HTH domain 2553011..2553394 Variovorax paradoxus S110 7970434 YP_002944285.1 CDS Vapar_2392 NC_012791.1 2553544 2553951 R KEGG: aav:Aave_3399 hypothetical protein; hypothetical protein complement(2553544..2553951) Variovorax paradoxus S110 7970435 YP_002944286.1 CDS Vapar_2393 NC_012791.1 2554233 2554517 D hypothetical protein 2554233..2554517 Variovorax paradoxus S110 7970436 YP_002944287.1 CDS Vapar_2394 NC_012791.1 2554753 2556942 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mpt:Mpe_A1495 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(2554753..2556942) Variovorax paradoxus S110 7970438 YP_002944288.1 CDS Vapar_2395 NC_012791.1 2556939 2557868 R KEGG: ajs:Ajs_1783 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(2556939..2557868) Variovorax paradoxus S110 7970439 YP_002944289.1 CDS thiG NC_012791.1 2557865 2558686 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(2557865..2558686) Variovorax paradoxus S110 7970440 YP_002944290.1 CDS Vapar_2397 NC_012791.1 2558722 2558925 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: vei:Veis_4313 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS complement(2558722..2558925) Variovorax paradoxus S110 7970441 YP_002944291.1 CDS Vapar_2398 NC_012791.1 2558922 2560013 R PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_3068 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2558922..2560013) Variovorax paradoxus S110 7970442 YP_002944292.1 CDS Vapar_2399 NC_012791.1 2560154 2561017 D KEGG: ajs:Ajs_1787 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 2560154..2561017 Variovorax paradoxus S110 7970443 YP_002944293.1 CDS Vapar_2400 NC_012791.1 2560965 2562305 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rfr:Rfer_2463 permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease complement(2560965..2562305) Variovorax paradoxus S110 7970444 YP_002944294.1 CDS Vapar_2401 NC_012791.1 2562607 2563911 D PFAM: aminotransferase class-III; KEGG: bpy:Bphyt_6417 aminotransferase class-III; class III aminotransferase 2562607..2563911 Variovorax paradoxus S110 7970445 YP_002944295.1 CDS Vapar_2402 NC_012791.1 2563898 2564932 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rme:Rmet_2452 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2563898..2564932) Variovorax paradoxus S110 7970446 YP_002944296.1 CDS Vapar_2403 NC_012791.1 2564929 2565258 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pol:Bpro_2334 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(2564929..2565258) Variovorax paradoxus S110 7970447 YP_002944297.1 CDS Vapar_2404 NC_012791.1 2565302 2566639 R KEGG: pol:Bpro_2335 sulfate adenylyltransferase subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit complement(2565302..2566639) Variovorax paradoxus S110 7970448 YP_002944298.1 CDS Vapar_2405 NC_012791.1 2566639 2567592 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(2566639..2567592) Variovorax paradoxus S110 7970449 YP_002944299.1 CDS Vapar_2406 NC_012791.1 2567636 2568268 R PFAM: phosphoadenosine phosphosulfate reductase; KEGG: aav:Aave_0311 phosphoadenylylsulfate reductase (thioredoxin); phosphoadenosine phosphosulfate reductase complement(2567636..2568268) Variovorax paradoxus S110 7970450 YP_002944300.1 CDS Vapar_2407 NC_012791.1 2568289 2568684 R PFAM: conserved hypothetical protein; KEGG: bxe:Bxe_B0921 hypothetical protein; hypothetical protein complement(2568289..2568684) Variovorax paradoxus S110 7970451 YP_002944301.1 CDS Vapar_2408 NC_012791.1 2568681 2570459 R PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: pol:Bpro_2339 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like; Sulfite reductase (ferredoxin) complement(2568681..2570459) Variovorax paradoxus S110 7970452 YP_002944302.1 CDS Vapar_2409 NC_012791.1 2570796 2571947 R PFAM: Integrase catalytic region; KEGG: bxe:Bxe_A0541 transposase integrase; integrase catalytic subunit complement(2570796..2571947) Variovorax paradoxus S110 7970453 YP_002944303.1 CDS Vapar_2410 NC_012791.1 2572581 2575691 R PFAM: acriflavin resistance protein; KEGG: pna:Pnap_3902 acriflavin resistance protein; acriflavin resistance protein complement(2572581..2575691) Variovorax paradoxus S110 7970454 YP_002944304.1 CDS Vapar_2411 NC_012791.1 2575688 2576920 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pna:Pnap_3901 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit complement(2575688..2576920) Variovorax paradoxus S110 7970455 YP_002944305.1 CDS Vapar_2412 NC_012791.1 2576917 2578413 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pna:Pnap_3900 RND efflux system outer membrane lipoprotein; NodT family RND efflux system outer membrane lipoprotein complement(2576917..2578413) Variovorax paradoxus S110 7970456 YP_002944306.1 CDS Vapar_2413 NC_012791.1 2578410 2579132 R PFAM: regulatory protein TetR; KEGG: mms:mma_0049 TetR family transcriptional regulator; TetR family transcriptional regulator complement(2578410..2579132) Variovorax paradoxus S110 7970457 YP_002944307.1 CDS Vapar_2414 NC_012791.1 2579303 2580847 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dac:Daci_2530 sigma54 specific transcriptional regulator; sigma54 specific Fis family transcriptional regulator 2579303..2580847 Variovorax paradoxus S110 7970458 YP_002944308.1 CDS Vapar_2416 NC_012791.1 2581314 2582507 D PFAM: extracellular ligand-binding receptor; KEGG: dac:Daci_2551 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2581314..2582507 Variovorax paradoxus S110 7970460 YP_002944309.1 CDS Vapar_2417 NC_012791.1 2582640 2584097 D PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: pna:Pnap_1238 fibronectin, type III domain-containing protein; Fibronectin type III domain-containing protein 2582640..2584097 Variovorax paradoxus S110 7970461 YP_002944310.1 CDS Vapar_2418 NC_012791.1 2584138 2584905 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dac:Daci_2552 ABC transporter; ABC transporter 2584138..2584905 Variovorax paradoxus S110 7970462 YP_002944311.1 CDS Vapar_2419 NC_012791.1 2584902 2585048 D hypothetical protein 2584902..2585048 Variovorax paradoxus S110 7970463 YP_002944312.1 CDS Vapar_2420 NC_012791.1 2585045 2585773 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dia:Dtpsy_2063 ABC transporter; ABC transporter 2585045..2585773 Variovorax paradoxus S110 7970464 YP_002944313.1 CDS Vapar_2421 NC_012791.1 2585928 2586911 D PFAM: inner-membrane translocator; KEGG: dac:Daci_2554 inner-membrane translocator; inner-membrane translocator 2585928..2586911 Variovorax paradoxus S110 7970465 YP_002944314.1 CDS Vapar_2422 NC_012791.1 2586928 2587995 D PFAM: inner-membrane translocator; KEGG: dac:Daci_2555 inner-membrane translocator; inner-membrane translocator 2586928..2587995 Variovorax paradoxus S110 7970466 YP_002944315.1 CDS Vapar_2423 NC_012791.1 2587992 2588879 D PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_2058 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein 2587992..2588879 Variovorax paradoxus S110 7970467 YP_002944316.1 CDS Vapar_2424 NC_012791.1 2588933 2589439 D KEGG: bpd:BURPS668_2397 hypothetical protein; hypothetical protein 2588933..2589439 Variovorax paradoxus S110 7970468 YP_002944317.1 CDS Vapar_2425 NC_012791.1 2589421 2590485 R KEGG: dac:Daci_2562 ferrochelatase; TIGRFAM: ferrochelatase; PFAM: ferrochelatase; ferrochelatase complement(2589421..2590485) Variovorax paradoxus S110 7970469 YP_002944318.1 CDS Vapar_2426 NC_012791.1 2590574 2591662 R PFAM: integrase family protein; KEGG: bte:BTH_II1011 integrase-like protein; integrase family protein complement(2590574..2591662) Variovorax paradoxus S110 7970470 YP_002944319.1 CDS Vapar_2427 NC_012791.1 2591662 2591865 R PFAM: Excisionase domain protein; KEGG: pag:PLES_13221 excisionase; Excisionase domain-containing protein complement(2591662..2591865) Variovorax paradoxus S110 7970471 YP_002944320.1 CDS Vapar_2428 NC_012791.1 2591862 2592296 R PFAM: HNH endonuclease; KEGG: bcj:pBCA023 hypothetical protein; HNH endonuclease complement(2591862..2592296) Variovorax paradoxus S110 7970472 YP_002944321.1 CDS Vapar_2429 NC_012791.1 2592293 2592556 R hypothetical protein complement(2592293..2592556) Variovorax paradoxus S110 7970473 YP_002944322.1 CDS Vapar_2430 NC_012791.1 2592553 2592711 R hypothetical protein complement(2592553..2592711) Variovorax paradoxus S110 7970474 YP_002944323.1 CDS Vapar_2431 NC_012791.1 2592713 2593501 R KEGG: bxe:Bxe_A1211 phage-related protein; hypothetical protein complement(2592713..2593501) Variovorax paradoxus S110 7970475 YP_002944324.1 CDS Vapar_2432 NC_012791.1 2593501 2594034 R KEGG: pst:PSPTO_4054 hypothetical protein; hypothetical protein complement(2593501..2594034) Variovorax paradoxus S110 7974204 YP_002944325.1 CDS Vapar_2433 NC_012791.1 2594031 2594873 R hypothetical protein complement(2594031..2594873) Variovorax paradoxus S110 7969497 YP_002944326.1 CDS Vapar_2434 NC_012791.1 2594863 2595261 R PFAM: protein of unknown function DUF551; KEGG: ecz:ECS88_4998 hypothetical protein from phage origin; hypothetical protein complement(2594863..2595261) Variovorax paradoxus S110 7969498 YP_002944327.1 CDS Vapar_2435 NC_012791.1 2595467 2595724 R hypothetical protein complement(2595467..2595724) Variovorax paradoxus S110 7969499 YP_002944328.1 CDS Vapar_2436 NC_012791.1 2595721 2596386 R KEGG: dac:Daci_3204 hypothetical protein; hypothetical protein complement(2595721..2596386) Variovorax paradoxus S110 7969500 YP_002944329.1 CDS Vapar_2437 NC_012791.1 2596379 2597194 R KEGG: har:HEAR2307 hypothetical protein; hypothetical protein complement(2596379..2597194) Variovorax paradoxus S110 7969501 YP_002944330.1 CDS Vapar_2438 NC_012791.1 2597191 2598405 R KEGG: bcj:BCAM1041 phage coiled coil domain protein; hypothetical protein complement(2597191..2598405) Variovorax paradoxus S110 7969502 YP_002944331.1 CDS Vapar_2439 NC_012791.1 2598414 2598557 R hypothetical protein complement(2598414..2598557) Variovorax paradoxus S110 7969503 YP_002944332.1 CDS Vapar_2440 NC_012791.1 2598554 2598904 R hypothetical protein complement(2598554..2598904) Variovorax paradoxus S110 7969504 YP_002944333.1 CDS Vapar_2441 NC_012791.1 2599086 2599265 R hypothetical protein complement(2599086..2599265) Variovorax paradoxus S110 7969505 YP_002944334.1 CDS Vapar_2442 NC_012791.1 2599262 2599489 R hypothetical protein complement(2599262..2599489) Variovorax paradoxus S110 7969506 YP_002944335.1 CDS Vapar_2443 NC_012791.1 2599486 2599665 R hypothetical protein complement(2599486..2599665) Variovorax paradoxus S110 7969507 YP_002944336.1 CDS Vapar_2444 NC_012791.1 2599662 2599853 R hypothetical protein complement(2599662..2599853) Variovorax paradoxus S110 7969508 YP_002944337.1 CDS Vapar_2445 NC_012791.1 2600152 2600385 R hypothetical protein complement(2600152..2600385) Variovorax paradoxus S110 7969509 YP_002944338.1 CDS Vapar_2446 NC_012791.1 2600382 2600579 R hypothetical protein complement(2600382..2600579) Variovorax paradoxus S110 7969510 YP_002944339.1 CDS Vapar_2447 NC_012791.1 2600874 2601239 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gox:GOX1761 hypothetical protein; XRE family transcriptional regulator 2600874..2601239 Variovorax paradoxus S110 7969511 YP_002944340.1 CDS Vapar_2448 NC_012791.1 2601570 2602160 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: baa:BA_3873 HTH_3, helix-turn-helix; XRE family transcriptional regulator 2601570..2602160 Variovorax paradoxus S110 7969512 YP_002944341.1 CDS Vapar_2449 NC_012791.1 2602342 2602830 D PFAM: fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin; fimbrial protein pilin 2602342..2602830 Variovorax paradoxus S110 7969513 YP_002944342.1 CDS Vapar_2450 NC_012791.1 2602879 2603130 R hypothetical protein complement(2602879..2603130) Variovorax paradoxus S110 7969514 YP_002944343.1 CDS Vapar_2451 NC_012791.1 2603132 2603551 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sil:SPO1265 DNA-binding protein; XRE family transcriptional regulator complement(2603132..2603551) Variovorax paradoxus S110 7969515 YP_002944344.1 CDS Vapar_2452 NC_012791.1 2603697 2603942 D KEGG: plu:plu3476 hypothetical protein; hypothetical protein 2603697..2603942 Variovorax paradoxus S110 7969516 YP_002944345.1 CDS Vapar_2453 NC_012791.1 2604119 2604601 D KEGG: hypothetical protein; hypothetical protein 2604119..2604601 Variovorax paradoxus S110 7969517 YP_002944346.1 CDS Vapar_2454 NC_012791.1 2604601 2605317 D KEGG: hch:HCH_04343 hypothetical protein; hypothetical protein 2604601..2605317 Variovorax paradoxus S110 7969518 YP_002944347.1 CDS Vapar_2455 NC_012791.1 2605314 2605559 D hypothetical protein 2605314..2605559 Variovorax paradoxus S110 7969519 YP_002944348.1 CDS Vapar_2456 NC_012791.1 2605559 2605843 D KEGG: aav:Aave_1757 hypothetical protein; AsnC family transcriptional regulator 2605559..2605843 Variovorax paradoxus S110 7969520 YP_002944349.1 CDS Vapar_2457 NC_012791.1 2605840 2606697 D KEGG: bvi:Bcep1808_4523 hypothetical protein; hypothetical protein 2605840..2606697 Variovorax paradoxus S110 7969521 YP_002944350.1 CDS Vapar_2458 NC_012791.1 2606690 2607256 D KEGG: lpc:LPC_2814 hypothetical protein; hypothetical protein 2606690..2607256 Variovorax paradoxus S110 7969522 YP_002944351.1 CDS Vapar_2459 NC_012791.1 2607256 2607648 D hypothetical protein 2607256..2607648 Variovorax paradoxus S110 7969523 YP_002944352.1 CDS Vapar_2460 NC_012791.1 2607645 2608049 D hypothetical protein 2607645..2608049 Variovorax paradoxus S110 7969524 YP_002944353.1 CDS Vapar_2461 NC_012791.1 2608046 2608339 D KEGG: pag:PLES_25081 hypothetical protein; hypothetical protein 2608046..2608339 Variovorax paradoxus S110 7969525 YP_002944354.1 CDS Vapar_2462 NC_012791.1 2608336 2608530 D hypothetical protein 2608336..2608530 Variovorax paradoxus S110 7969526 YP_002944355.1 CDS Vapar_2463 NC_012791.1 2608527 2608862 D KEGG: xfa:XF1666 hypothetical protein; hypothetical protein 2608527..2608862 Variovorax paradoxus S110 7969527 YP_002944356.1 CDS Vapar_2464 NC_012791.1 2608868 2609311 D KEGG: bav:BAV1303 phage protein; hypothetical protein 2608868..2609311 Variovorax paradoxus S110 7969528 YP_002944357.1 CDS Vapar_2465 NC_012791.1 2609308 2609802 D KEGG: bmj:BMULJ_04644 bacteriophage portal protein; hypothetical protein 2609308..2609802 Variovorax paradoxus S110 7969529 YP_002944358.1 CDS Vapar_2466 NC_012791.1 2609799 2610023 D KEGG: dac:Daci_4107 hypothetical protein; hypothetical protein 2609799..2610023 Variovorax paradoxus S110 7969530 YP_002944359.1 CDS Vapar_2467 NC_012791.1 2610020 2610244 D hypothetical protein 2610020..2610244 Variovorax paradoxus S110 7969531 YP_002944360.1 CDS Vapar_2468 NC_012791.1 2610223 2610321 D hypothetical protein 2610223..2610321 Variovorax paradoxus S110 7969532 YP_002944361.1 CDS Vapar_2469 NC_012791.1 2610321 2611046 D KEGG: dac:Daci_1625 hypothetical protein; hypothetical protein 2610321..2611046 Variovorax paradoxus S110 7969533 YP_002944362.1 CDS Vapar_2470 NC_012791.1 2612594 2613085 D TIGRFAM: phage terminase, small subunit, , P27 family; PFAM: terminase small subunit P27; KEGG: ppu:PP_3882 phage terminase, small subunit; phage terminase, small subunit, , P27 family 2612594..2613085 Variovorax paradoxus S110 7969535 YP_002944363.1 CDS Vapar_2471 NC_012791.1 2613111 2614763 D PFAM: Terminase; KEGG: net:Neut_1472 phage terminase; Terminase 2613111..2614763 Variovorax paradoxus S110 7969536 YP_002944364.1 CDS Vapar_2472 NC_012791.1 2614754 2616382 D TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: mch:Mchl_1602 phage portal protein, HK97 family; phage portal protein, HK97 family 2614754..2616382 Variovorax paradoxus S110 7969537 YP_002944365.1 CDS Vapar_2473 NC_012791.1 2616379 2617062 D PFAM: peptidase S14 ClpP; KEGG: hap:HAPS_0606 Clp protease-like protein; peptidase S14 ClpP 2616379..2617062 Variovorax paradoxus S110 7969538 YP_002944366.1 CDS Vapar_2474 NC_012791.1 2617139 2618590 D PFAM: major capsid protein HK97; KEGG: bph:Bphy_7144 HK97 family phage major capsid protein; major capsid protein HK97 2617139..2618590 Variovorax paradoxus S110 7969539 YP_002944367.1 CDS Vapar_2475 NC_012791.1 2618642 2619094 D KEGG: bph:Bphy_7145 hypothetical protein; hypothetical protein 2618642..2619094 Variovorax paradoxus S110 7969540 YP_002944368.1 CDS Vapar_2476 NC_012791.1 2619112 2619378 D hypothetical protein 2619112..2619378 Variovorax paradoxus S110 7969541 YP_002944369.1 CDS Vapar_2477 NC_012791.1 2619383 2620051 D KEGG: bph:Bphy_7146 hypothetical protein; hypothetical protein 2619383..2620051 Variovorax paradoxus S110 7969542 YP_002944370.1 CDS Vapar_2478 NC_012791.1 2620087 2620425 D PFAM: head-tail adaptor protein; head-tail adaptor protein 2620087..2620425 Variovorax paradoxus S110 7969543 YP_002944371.1 CDS Vapar_2479 NC_012791.1 2620418 2620957 D TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: dac:Daci_1638 HK97 family phage protein; phage protein, HK97 gp10 family 2620418..2620957 Variovorax paradoxus S110 7969544 YP_002944372.1 CDS Vapar_2480 NC_012791.1 2620954 2621319 D KEGG: dac:Daci_1639 hypothetical protein; hypothetical protein 2620954..2621319 Variovorax paradoxus S110 7969545 YP_002944373.1 CDS Vapar_2481 NC_012791.1 2621404 2622054 D KEGG: dac:Daci_1640 hypothetical protein; hypothetical protein 2621404..2622054 Variovorax paradoxus S110 7969546 YP_002944374.1 CDS Vapar_2482 NC_012791.1 2622056 2622283 D hypothetical protein 2622056..2622283 Variovorax paradoxus S110 7969547 YP_002944375.1 CDS Vapar_2483 NC_012791.1 2622280 2622642 D KEGG: dac:Daci_1641 hypothetical protein; hypothetical protein 2622280..2622642 Variovorax paradoxus S110 7969548 YP_002944376.1 CDS Vapar_2484 NC_012791.1 2622657 2622923 D KEGG: dac:Daci_1642 hypothetical protein; hypothetical protein 2622657..2622923 Variovorax paradoxus S110 7969549 YP_002944377.1 CDS Vapar_2485 NC_012791.1 2622923 2625478 D KEGG: dac:Daci_1643 hypothetical protein; hypothetical protein 2622923..2625478 Variovorax paradoxus S110 7969550 YP_002944378.1 CDS Vapar_2486 NC_012791.1 2625475 2626407 D KEGG: shn:Shewana3_0168 Ig family protein; hypothetical protein 2625475..2626407 Variovorax paradoxus S110 7969551 YP_002944379.1 CDS Vapar_2487 NC_012791.1 2626404 2627282 D KEGG: nwi:Nwi_0795 hypothetical protein; hypothetical protein 2626404..2627282 Variovorax paradoxus S110 7969552 YP_002944380.1 CDS Vapar_2488 NC_012791.1 2627279 2627719 D KEGG: dac:Daci_4081 NLP/P60 protein; hypothetical protein 2627279..2627719 Variovorax paradoxus S110 7969553 YP_002944381.1 CDS Vapar_2489 NC_012791.1 2627716 2630946 D KEGG: bph:Bphy_7158 hypothetical protein; hypothetical protein 2627716..2630946 Variovorax paradoxus S110 7969554 YP_002944382.1 CDS Vapar_2490 NC_012791.1 2630943 2633180 D KEGG: bpm:BURPS1710b_2229 Hep_Hag family protein; hypothetical protein 2630943..2633180 Variovorax paradoxus S110 7969555 YP_002944383.1 CDS Vapar_2491 NC_012791.1 2633243 2633575 D hypothetical protein 2633243..2633575 Variovorax paradoxus S110 7969556 YP_002944384.1 CDS Vapar_2492 NC_012791.1 2633572 2633877 D hypothetical protein 2633572..2633877 Variovorax paradoxus S110 7969557 YP_002944385.1 CDS Vapar_2493 NC_012791.1 2633880 2634380 D PFAM: glycoside hydrolase family 24; KEGG: sei:SPC_2723 lysozyme; glycoside hydrolase family 24 2633880..2634380 Variovorax paradoxus S110 7969558 YP_002944386.1 CDS Vapar_2494 NC_012791.1 2634377 2634550 D hypothetical protein 2634377..2634550 Variovorax paradoxus S110 7969559 YP_002944387.1 CDS Vapar_2495 NC_012791.1 2634547 2635089 D KEGG: reu:Reut_A2419 hypothetical protein; hypothetical protein 2634547..2635089 Variovorax paradoxus S110 7969560 YP_002944388.1 CDS Vapar_2496 NC_012791.1 2635100 2635327 R hypothetical protein complement(2635100..2635327) Variovorax paradoxus S110 7969561 YP_002944389.1 CDS Vapar_2497 NC_012791.1 2635324 2635500 R hypothetical protein complement(2635324..2635500) Variovorax paradoxus S110 7969562 YP_002944390.1 CDS Vapar_2498 NC_012791.1 2635497 2635688 R hypothetical protein complement(2635497..2635688) Variovorax paradoxus S110 7969563 YP_002944391.1 CDS Vapar_2499 NC_012791.1 2635685 2635996 R KEGG: cko:CKO_01879 hypothetical protein; hypothetical protein complement(2635685..2635996) Variovorax paradoxus S110 7969564 YP_002944392.1 CDS Vapar_2500 NC_012791.1 2635993 2636424 R KEGG: aba:Acid345_3152 hypothetical protein; hypothetical protein complement(2635993..2636424) Variovorax paradoxus S110 7969565 YP_002944393.1 CDS Vapar_2501 NC_012791.1 2636632 2637363 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: dia:Dtpsy_2051 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD superfamily hydrolase 2636632..2637363 Variovorax paradoxus S110 7969566 YP_002944394.1 CDS Vapar_2502 NC_012791.1 2637365 2637670 R PFAM: NIPSNAP family containing protein; KEGG: dac:Daci_4415 NIPSNAP family protein; NIPSNAP family containing protein complement(2637365..2637670) Variovorax paradoxus S110 7969567 YP_002944395.1 CDS Vapar_2503 NC_012791.1 2637699 2638001 R KEGG: aav:Aave_2031 hypothetical protein; hypothetical protein complement(2637699..2638001) Variovorax paradoxus S110 7969568 YP_002944396.1 CDS Vapar_2504 NC_012791.1 2637998 2639242 R TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: pna:Pnap_2965 amine oxidase; squalene-associated FAD-dependent desaturase complement(2637998..2639242) Variovorax paradoxus S110 7969569 YP_002944397.1 CDS Vapar_2505 NC_012791.1 2639254 2640093 R KEGG: dac:Daci_2572 squalene synthase HpnD; TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; squalene synthase HpnD complement(2639254..2640093) Variovorax paradoxus S110 7969570 YP_002944398.1 CDS Vapar_2506 NC_012791.1 2640090 2640947 R TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: dac:Daci_2573 squalene synthase HpnC; squalene synthase HpnC complement(2640090..2640947) Variovorax paradoxus S110 7969571 YP_002944399.1 CDS Vapar_2507 NC_012791.1 2641152 2642996 D PFAM: K potassium transporter; KEGG: bmn:BMA10247_1092 potassium uptake protein; K potassium transporter 2641152..2642996 Variovorax paradoxus S110 7969572 YP_002944400.1 CDS Vapar_2508 NC_012791.1 2643093 2644286 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2027 secretion protein HlyD; RND family efflux transporter MFP subunit 2643093..2644286 Variovorax paradoxus S110 7969573 YP_002944401.1 CDS Vapar_2509 NC_012791.1 2644283 2647438 D PFAM: acriflavin resistance protein; KEGG: dia:Dtpsy_1126 acriflavin resistance protein; acriflavin resistance protein 2644283..2647438 Variovorax paradoxus S110 7969574 YP_002944402.1 CDS tig NC_012791.1 2647665 2648978 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2647665..2648978 Variovorax paradoxus S110 7969576 YP_002944403.1 CDS clpP NC_012791.1 2649093 2649701 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2649093..2649701 Variovorax paradoxus S110 7969577 YP_002944404.1 CDS clpX NC_012791.1 2649824 2651089 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2649824..2651089 Variovorax paradoxus S110 7969905 YP_002944405.1 CDS Vapar_2513 NC_012791.1 2651209 2653650 D KEGG: rfr:Rfer_1556 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; ATPase AAA; ATP-dependent protease La 2651209..2653650 Variovorax paradoxus S110 7969987 YP_002944406.1 CDS Vapar_2514 NC_012791.1 2654146 2654778 D KEGG: dia:Dtpsy_1184 hypothetical protein; hypothetical protein 2654146..2654778 Variovorax paradoxus S110 7969991 YP_002944407.1 CDS Vapar_2515 NC_012791.1 2654830 2656131 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_2044 major facilitator superfamily MFS_1; major facilitator superfamily protein 2654830..2656131 Variovorax paradoxus S110 7969992 YP_002944408.1 CDS Vapar_2516 NC_012791.1 2656142 2656924 R KEGG: bur:Bcep18194_B0491 hypothetical protein; hypothetical protein complement(2656142..2656924) Variovorax paradoxus S110 7969993 YP_002944409.1 CDS Vapar_2517 NC_012791.1 2656943 2657752 R KEGG: aav:Aave_1488 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(2656943..2657752) Variovorax paradoxus S110 7969994 YP_002944410.1 CDS Vapar_2518 NC_012791.1 2657749 2659302 R TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: pol:Bpro_2046 fumarase; hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit alpha complement(2657749..2659302) Variovorax paradoxus S110 7969995 YP_002944411.1 CDS proX NC_012791.1 2659361 2660371 R with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit complement(2659361..2660371) Variovorax paradoxus S110 7969996 YP_002944412.1 CDS Vapar_2520 NC_012791.1 2660395 2661546 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1496 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2660395..2661546) Variovorax paradoxus S110 7969997 YP_002944413.1 CDS Vapar_2521 NC_012791.1 2661572 2662825 R KEGG: aav:Aave_1497 glycine betaine/L-proline ABC transporter ATPase; TIGRFAM: glycine betaine/L-proline ABC transporter ATPase; PFAM: ABC transporter; CBS domain containing protein; SMART: ATPase AAA; glycine betaine/L-proline ABC transporter ATPase subunit complement(2661572..2662825) Variovorax paradoxus S110 7969998 YP_002944414.1 CDS fumC NC_012791.1 2663333 2664730 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2663333..2664730 Variovorax paradoxus S110 7969999 YP_002944415.1 CDS Vapar_2523 NC_012791.1 2664731 2665348 R PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: mms:mma_1856 NADH-flavin reductase; NAD-dependent epimerase/dehydratase complement(2664731..2665348) Variovorax paradoxus S110 7970000 YP_002944416.1 CDS Vapar_2524 NC_012791.1 2665451 2666413 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pfo:Pfl01_4475 LysR family transcriptional regulator; LysR family transcriptional regulator 2665451..2666413 Variovorax paradoxus S110 7970001 YP_002944417.1 CDS Vapar_2525 NC_012791.1 2666373 2667011 R PFAM: conserved hypothetical protein; KEGG: pna:Pnap_2881 hypothetical protein; hypothetical protein complement(2666373..2667011) Variovorax paradoxus S110 7970002 YP_002944418.1 CDS Vapar_2526 NC_012791.1 2667160 2669160 D TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: aav:Aave_1499 acetyl-coenzyme A synthetase; acetate/CoA ligase 2667160..2669160 Variovorax paradoxus S110 7970003 YP_002944419.1 CDS Vapar_2527 NC_012791.1 2669300 2669800 D KEGG: vei:Veis_3219 hypothetical protein; hypothetical protein 2669300..2669800 Variovorax paradoxus S110 7970004 YP_002944420.1 CDS Vapar_2528 NC_012791.1 2669813 2670118 R PFAM: cytochrome C class I; KEGG: aav:Aave_1504 cytochrome C, class I; cytochrome C class I complement(2669813..2670118) Variovorax paradoxus S110 7970005 YP_002944421.1 CDS Vapar_2529 NC_012791.1 2670227 2670481 D KEGG: pol:Bpro_2051 hypothetical protein; hypothetical protein 2670227..2670481 Variovorax paradoxus S110 7970006 YP_002944422.1 CDS Vapar_2530 NC_012791.1 2670503 2672197 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(2670503..2672197) Variovorax paradoxus S110 7970007 YP_002944423.1 CDS Vapar_2531 NC_012791.1 2672301 2673239 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_3010 LysR family transcriptional regulator; LysR family transcriptional regulator 2672301..2673239 Variovorax paradoxus S110 7970008 YP_002944424.1 CDS Vapar_2532 NC_012791.1 2673246 2674190 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pae:PA2877 transcriptional regulator; LysR family transcriptional regulator complement(2673246..2674190) Variovorax paradoxus S110 7970009 YP_002944425.1 CDS Vapar_2533 NC_012791.1 2674321 2675094 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: spe:Spro_3063 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2674321..2675094 Variovorax paradoxus S110 7970010 YP_002944426.1 CDS Vapar_2534 NC_012791.1 2675210 2676025 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 2675210..2676025 Variovorax paradoxus S110 7970011 YP_002944427.1 CDS Vapar_2535 NC_012791.1 2676151 2676819 D PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_2090 transcriptional regulator, GntR family; GntR family transcriptional regulator 2676151..2676819 Variovorax paradoxus S110 7970012 YP_002944428.1 CDS Vapar_2536 NC_012791.1 2676872 2678356 D PFAM: Malonyl-CoA decarboxylase; KEGG: ajs:Ajs_1077 malonyl-CoA decarboxylase; Malonyl-CoA decarboxylase 2676872..2678356 Variovorax paradoxus S110 7970013 YP_002944429.1 CDS Vapar_2537 NC_012791.1 2678431 2679420 D PFAM: conserved hypothetical protein; KEGG: dia:Dtpsy_0994 hypothetical protein; hypothetical protein 2678431..2679420 Variovorax paradoxus S110 7970014 YP_002944430.1 CDS Vapar_2538 NC_012791.1 2679472 2681007 D catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 2679472..2681007 Variovorax paradoxus S110 7970015 YP_002944431.1 CDS Vapar_2539 NC_012791.1 2681004 2682707 R PFAM: beta-lactamase; KEGG: reh:H16_B0553 beta-lactamase class C; beta-lactamase complement(2681004..2682707) Variovorax paradoxus S110 7970016 YP_002944432.1 CDS Vapar_2540 NC_012791.1 2682772 2683833 R KEGG: bam:Bamb_6546 phenylacetaldoxime dehydratase; Phenylacetaldoxime dehydratase complement(2682772..2683833) Variovorax paradoxus S110 7970017 YP_002944433.1 CDS Vapar_2541 NC_012791.1 2683851 2684903 R PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mpt:Mpe_A0993 aliphatic nitrilase; nitrilase complement(2683851..2684903) Variovorax paradoxus S110 7970018 YP_002944434.1 CDS Vapar_2542 NC_012791.1 2685075 2686037 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mpt:Mpe_A0994 AraC family transcriptional regulator; AraC family transcriptional regulator 2685075..2686037 Variovorax paradoxus S110 7970019 YP_002944435.1 CDS Vapar_2543 NC_012791.1 2686060 2686485 R PFAM: UspA domain protein; KEGG: mpt:Mpe_A3700 hypothetical protein; UspA domain-containing protein complement(2686060..2686485) Variovorax paradoxus S110 7970020 YP_002944436.1 CDS Vapar_2544 NC_012791.1 2686566 2687387 R PFAM: protein of unknown function DUF81; KEGG: pna:Pnap_2371 hypothetical protein; hypothetical protein complement(2686566..2687387) Variovorax paradoxus S110 7970021 YP_002944437.1 CDS Vapar_2545 NC_012791.1 2687670 2688002 R PFAM: protein of unknown function DUF710; KEGG: rfr:Rfer_2627 hypothetical protein; hypothetical protein complement(2687670..2688002) Variovorax paradoxus S110 7970022 YP_002944438.1 CDS Vapar_2546 NC_012791.1 2687999 2688223 R KEGG: rfr:Rfer_2626 hypothetical protein; hypothetical protein complement(2687999..2688223) Variovorax paradoxus S110 7970023 YP_002944439.1 CDS Vapar_2547 NC_012791.1 2688734 2690581 D PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pna:Pnap_2368 TonB-dependent receptor, plug; TonB-dependent receptor plug 2688734..2690581 Variovorax paradoxus S110 7970024 YP_002944440.1 CDS Vapar_2548 NC_012791.1 2690566 2691975 D TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid ac-diamide synthase; KEGG: pol:Bpro_2785 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 2690566..2691975 Variovorax paradoxus S110 7970025 YP_002944441.1 CDS Vapar_2549 NC_012791.1 2691965 2692540 D PFAM: cobalbumin biosynthesis protein; KEGG: pna:Pnap_2365 cobalbumin biosynthesis enzyme; adenosylcobinamide-phosphate guanylyltransferase 2691965..2692540 Variovorax paradoxus S110 7970026 YP_002944442.1 CDS Vapar_2550 NC_012791.1 2692537 2693406 D PFAM: periplasmic binding protein; KEGG: pna:Pnap_2364 periplasmic binding protein; periplasmic binding protein 2692537..2693406 Variovorax paradoxus S110 7970027 YP_002944443.1 CDS Vapar_2551 NC_012791.1 2693422 2694432 D PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein; transport system permease 2693422..2694432 Variovorax paradoxus S110 7970028 YP_002944444.1 CDS Vapar_2552 NC_012791.1 2694429 2695211 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pna:Pnap_2362 ABC transporter; ABC transporter 2694429..2695211 Variovorax paradoxus S110 7970029 YP_002944445.1 CDS Vapar_2553 NC_012791.1 2695241 2695810 D KEGG: pol:Bpro_2764 cob(I)yrinic acid a,c-diamide adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase 2695241..2695810 Variovorax paradoxus S110 7970030 YP_002944446.1 CDS Vapar_2554 NC_012791.1 2695816 2696493 D TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: pna:Pnap_2149 cob(II)yrinic acid a,c-diamide reductase; cob(II)yrinic acid a,c-diamide reductase 2695816..2696493 Variovorax paradoxus S110 7970031 YP_002944447.1 CDS Vapar_2555 NC_012791.1 2696490 2697473 D TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: dia:Dtpsy_2533 cobalamin biosynthesis protein CobD; cobalamin biosynthesis protein CobD 2696490..2697473 Variovorax paradoxus S110 7970032 YP_002944448.1 CDS Vapar_2556 NC_012791.1 2697470 2698495 D PFAM: aminotransferase class I and II; KEGG: pna:Pnap_2147 aminotransferase, class I and II; class I and II aminotransferase 2697470..2698495 Variovorax paradoxus S110 7970033 YP_002944449.1 CDS Vapar_2557 NC_012791.1 2698512 2698865 D PFAM: LrgA family protein; KEGG: mpt:Mpe_A2255 transmembrane protein; LrgA family protein 2698512..2698865 Variovorax paradoxus S110 7970034 YP_002944450.1 CDS Vapar_2558 NC_012791.1 2698862 2699593 D PFAM: LrgB family protein; KEGG: mpt:Mpe_A2254 transmembrane protein; LrgB family protein 2698862..2699593 Variovorax paradoxus S110 7970035 YP_002944451.1 CDS Vapar_2559 NC_012791.1 2699635 2700111 D PFAM: OsmC family protein; KEGG: pol:Bpro_4479 OsmC-like protein; OsmC family protein 2699635..2700111 Variovorax paradoxus S110 7970036 YP_002944452.1 CDS Vapar_2560 NC_012791.1 2700129 2701043 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_5139 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2700129..2701043) Variovorax paradoxus S110 7970037 YP_002944453.1 CDS Vapar_2561 NC_012791.1 2701227 2702108 D PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: dac:Daci_5138 alpha/beta hydrolase domain-containing protein; alpha/beta hydrolase fold-3 domain-containing protein 2701227..2702108 Variovorax paradoxus S110 7970038 YP_002944454.1 CDS Vapar_2562 NC_012791.1 2702261 2703511 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_5137 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 2702261..2703511 Variovorax paradoxus S110 7970039 YP_002944455.1 CDS Vapar_2563 NC_012791.1 2703552 2706827 D TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dac:Daci_5136 hydrophobe/amphiphile efflux-1 (HAE1) family protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2703552..2706827 Variovorax paradoxus S110 7970040 YP_002944456.1 CDS Vapar_2564 NC_012791.1 2706861 2708348 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: hypothetical protein; NodT family RND efflux system outer membrane lipoprotein 2706861..2708348 Variovorax paradoxus S110 7970041 YP_002944457.1 CDS Vapar_2565 NC_012791.1 2708436 2709875 D TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid ac-diamide synthase; KEGG: pna:Pnap_2146 cobyric acid synthase CobQ; cobyric acid synthase CobQ 2708436..2709875 Variovorax paradoxus S110 7970042 YP_002944458.1 CDS Vapar_2566 NC_012791.1 2709872 2710921 D KEGG: ajs:Ajs_3176 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase 2709872..2710921 Variovorax paradoxus S110 7970043 YP_002944459.1 CDS Vapar_2567 NC_012791.1 2710926 2711720 D PFAM: cobalamin-5-phosphate synthase CobS; KEGG: aav:Aave_0928 cobalamin-5'-phosphate synthase; cobalamin-5-phosphate synthase CobS 2710926..2711720 Variovorax paradoxus S110 7970044 YP_002944460.1 CDS Vapar_2568 NC_012791.1 2711717 2712268 D PFAM: phosphoglycerate mutase; KEGG: pol:Bpro_0739 phosphoglycerate mutase; phosphoglycerate mutase 2711717..2712268 Variovorax paradoxus S110 7970045 YP_002944461.1 CDS Vapar_2569 NC_012791.1 2712268 2713197 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce1871 AraC family transcriptional regulator; AraC family transcriptional regulator 2712268..2713197 Variovorax paradoxus S110 7970046 YP_002944462.1 CDS Vapar_2570 NC_012791.1 2713246 2714142 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mxa:MXAN_2554 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2713246..2714142 Variovorax paradoxus S110 7970047 YP_002944463.1 CDS Vapar_2571 NC_012791.1 2714172 2714819 R KEGG: dac:Daci_2824 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III complement(2714172..2714819) Variovorax paradoxus S110 7970048 YP_002944464.1 CDS Vapar_2572 NC_012791.1 2714926 2716113 D PFAM: aminotransferase class I and II; KEGG: pna:Pnap_2076 GntR family transcriptional regulator; GntR family transcriptional regulator 2714926..2716113 Variovorax paradoxus S110 7970049 YP_002944465.1 CDS Vapar_2573 NC_012791.1 2716124 2716351 R KEGG: rfr:Rfer_1755 hypothetical protein; hypothetical protein complement(2716124..2716351) Variovorax paradoxus S110 7970050 YP_002944466.1 CDS Vapar_2574 NC_012791.1 2716415 2716741 D KEGG: rfr:Rfer_0522 hypothetical protein; hypothetical protein 2716415..2716741 Variovorax paradoxus S110 7970051 YP_002944467.1 CDS Vapar_2575 NC_012791.1 2716751 2717818 R PFAM: malate/L-lactate dehydrogenase; KEGG: vei:Veis_4538 malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase complement(2716751..2717818) Variovorax paradoxus S110 7970052 YP_002944468.1 CDS Vapar_2576 NC_012791.1 2717831 2717941 R hypothetical protein complement(2717831..2717941) Variovorax paradoxus S110 7970053 YP_002944469.1 CDS Vapar_2577 NC_012791.1 2718102 2718815 R KEGG: pol:Bpro_2720 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: haloacid dehalogenase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB complement(2718102..2718815) Variovorax paradoxus S110 7970054 YP_002944470.1 CDS Vapar_2578 NC_012791.1 2718812 2722309 R KEGG: pol:Bpro_2717 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; helicase domain protein; TRCF domain protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; transcription-repair coupling factor complement(2718812..2722309) Variovorax paradoxus S110 7970055 YP_002944471.1 CDS Vapar_2579 NC_012791.1 2722413 2723138 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: pna:Pnap_2549 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2722413..2723138 Variovorax paradoxus S110 7970056 YP_002944472.1 CDS Vapar_2580 NC_012791.1 2723135 2723629 D KEGG: dac:Daci_2850 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2723135..2723629 Variovorax paradoxus S110 7970057 YP_002944473.1 CDS Vapar_2581 NC_012791.1 2723635 2725050 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: aav:Aave_1583 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(2723635..2725050) Variovorax paradoxus S110 7970058 YP_002944474.1 CDS ompR NC_012791.1 2725127 2725858 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(2725127..2725858) Variovorax paradoxus S110 7970059 YP_002944475.1 CDS Vapar_2583 NC_012791.1 2726032 2726388 D hypothetical protein 2726032..2726388 Variovorax paradoxus S110 7970060 YP_002944476.1 CDS Vapar_2584 NC_012791.1 2726449 2727159 D PFAM: protein of unknown function DUF541; KEGG: dia:Dtpsy_2499 protein of unknown function DUF541; hypothetical protein 2726449..2727159 Variovorax paradoxus S110 7970061 YP_002944477.1 CDS Vapar_2585 NC_012791.1 2727169 2727939 R TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_2069 3-hydroxybutyrate dehydrogenase; 3-hydroxybutyrate dehydrogenase complement(2727169..2727939) Variovorax paradoxus S110 7970062 YP_002944478.1 CDS Vapar_2586 NC_012791.1 2728008 2728967 D PFAM: alpha/beta hydrolase fold; KEGG: pna:Pnap_2538 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2728008..2728967 Variovorax paradoxus S110 7970063 YP_002944479.1 CDS Vapar_2587 NC_012791.1 2728975 2731218 D KEGG: aav:Aave_1588 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; (p)ppGpp synthetase I SpoT/RelA 2728975..2731218 Variovorax paradoxus S110 7970064 YP_002944480.1 CDS Vapar_2588 NC_012791.1 2731557 2731883 D hypothetical protein 2731557..2731883 Variovorax paradoxus S110 7970066 YP_002944481.1 CDS Vapar_2589 NC_012791.1 2731920 2732516 D TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; KEGG: dia:Dtpsy_2495 polyhydroxyalkonate synthesis repressor, PhaR; polyhydroxyalkonate synthesis repressor, PhaR 2731920..2732516 Variovorax paradoxus S110 7970067 YP_002944482.1 CDS rimO NC_012791.1 2732558 2733964 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 2732558..2733964 Variovorax paradoxus S110 7973797 YP_002944483.1 CDS Vapar_2591 NC_012791.1 2734117 2734398 D KEGG: pna:Pnap_2819 hypothetical protein; hypothetical protein 2734117..2734398 Variovorax paradoxus S110 7972352 YP_002944484.1 CDS Vapar_2592 NC_012791.1 2734668 2734964 R hypothetical protein complement(2734668..2734964) Variovorax paradoxus S110 7972353 YP_002944485.1 CDS Vapar_2593 NC_012791.1 2735045 2735437 R PFAM: protein of unknown function DUF1232; KEGG: bbr:BB1021 hypothetical protein; hypothetical protein complement(2735045..2735437) Variovorax paradoxus S110 7972354 YP_002944486.1 CDS Vapar_2595 NC_012791.1 2738433 2739197 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hypothetical protein; short-chain dehydrogenase/reductase SDR 2738433..2739197 Variovorax paradoxus S110 7972357 YP_002944487.1 CDS Vapar_2596 NC_012791.1 2739204 2740664 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; KEGG: ajs:Ajs_2588 carbohydrate kinase, YjeF related protein; carbohydrate kinase complement(2739204..2740664) Variovorax paradoxus S110 7972358 YP_002944488.1 CDS Vapar_2597 NC_012791.1 2740714 2741967 R PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2697 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase complement(2740714..2741967) Variovorax paradoxus S110 7972359 YP_002944489.1 CDS Vapar_2598 NC_012791.1 2742020 2743345 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(2742020..2743345) Variovorax paradoxus S110 7972360 YP_002944490.1 CDS rpsB NC_012791.1 2743569 2744321 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2743569..2744321 Variovorax paradoxus S110 7972361 YP_002944491.1 CDS tsf NC_012791.1 2744402 2745325 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2744402..2745325 Variovorax paradoxus S110 7972362 YP_002944492.1 CDS Vapar_2601 NC_012791.1 2745428 2746150 D KEGG: aav:Aave_1825 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase 2745428..2746150 Variovorax paradoxus S110 7972363 YP_002944493.1 CDS Vapar_2602 NC_012791.1 2746164 2746733 D TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: aav:Aave_1826 ribosome recycling factor; ribosome recycling factor 2746164..2746733 Variovorax paradoxus S110 7972364 YP_002944494.1 CDS Vapar_2603 NC_012791.1 2746742 2747485 D KEGG: dac:Daci_4944 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 2746742..2747485 Variovorax paradoxus S110 7972365 YP_002944495.1 CDS Vapar_2604 NC_012791.1 2747513 2748358 D PFAM: phosphatidate cytidylyltransferase; KEGG: dia:Dtpsy_1228 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 2747513..2748358 Variovorax paradoxus S110 7972366 YP_002944496.1 CDS Vapar_2605 NC_012791.1 2748355 2749542 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2748355..2749542 Variovorax paradoxus S110 7972367 YP_002944497.1 CDS Vapar_2606 NC_012791.1 2749567 2750937 D TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: aav:Aave_1830 peptidase RseP; membrane-associated zinc metalloprotease 2749567..2750937 Variovorax paradoxus S110 7972368 YP_002944498.1 CDS Vapar_2607 NC_012791.1 2750976 2753411 D TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dia:Dtpsy_1231 outer membrane protein assembly complex, YaeT protein; outer membrane protein assembly complex, YaeT protein 2750976..2753411 Variovorax paradoxus S110 7972369 YP_002944499.1 CDS Vapar_2608 NC_012791.1 2753412 2753954 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: vei:Veis_1447 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 2753412..2753954 Variovorax paradoxus S110 7972370 YP_002944500.1 CDS lpxD NC_012791.1 2753969 2754946 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2753969..2754946 Variovorax paradoxus S110 7972371 YP_002944501.1 CDS Vapar_2610 NC_012791.1 2754970 2755422 D TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: pol:Bpro_2684 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2754970..2755422 Variovorax paradoxus S110 7972372 YP_002944502.1 CDS Vapar_2611 NC_012791.1 2755446 2756234 D KEGG: aav:Aave_1835 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase 2755446..2756234 Variovorax paradoxus S110 7972373 YP_002944503.1 CDS Vapar_2612 NC_012791.1 2756254 2757402 D KEGG: pol:Bpro_2682 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase 2756254..2757402 Variovorax paradoxus S110 7972374 YP_002944504.1 CDS rnhB NC_012791.1 2757374 2758096 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 2757374..2758096 Variovorax paradoxus S110 7972375 YP_002944505.1 CDS Vapar_2614 NC_012791.1 2758105 2758899 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_2680 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 2758105..2758899 Variovorax paradoxus S110 7972376 YP_002944506.1 CDS Vapar_2615 NC_012791.1 2759098 2760267 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2759098..2760267 Variovorax paradoxus S110 7972377 YP_002944507.1 CDS Vapar_2616 NC_012791.1 2760260 2760817 D KEGG: cbs:COXBURSA331_A1986 hypothetical protein; hypothetical protein 2760260..2760817 Variovorax paradoxus S110 7972378 YP_002944508.1 CDS Vapar_2617 NC_012791.1 2760819 2764067 D TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; MGS domain protein; carbamoyl-phosphate synthetase large chain oligomerisation; carbamoyl-phosphate synthetase large chain domain protein; KEGG: pol:Bpro_2678 carbamoyl-phosphate synthase large subunit; carbamoyl-phosphate synthase, large subunit 2760819..2764067 Variovorax paradoxus S110 7972379 YP_002944509.1 CDS Vapar_2618 NC_012791.1 2764076 2764945 D KEGG: ajs:Ajs_2387 hypothetical protein; hypothetical protein 2764076..2764945 Variovorax paradoxus S110 7972380 YP_002944510.1 CDS Vapar_2619 NC_012791.1 2765010 2765486 D TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_2677 GreA/GreB family elongation factor; transcription elongation factor GreA 2765010..2765486 Variovorax paradoxus S110 7972381 YP_002944511.1 CDS Vapar_2620 NC_012791.1 2765495 2765917 D KEGG: dac:Daci_4929 hypothetical protein; hypothetical protein 2765495..2765917 Variovorax paradoxus S110 7972382 YP_002944512.1 CDS Vapar_2621 NC_012791.1 2765968 2766726 R KEGG: dia:Dtpsy_1472 hypothetical protein; hypothetical protein complement(2765968..2766726) Variovorax paradoxus S110 7972383 YP_002944513.1 CDS Vapar_2622 NC_012791.1 2766729 2767208 R PFAM: protein of unknown function UPF0044; KEGG: rfr:Rfer_2009 hypothetical protein; hypothetical protein complement(2766729..2767208) Variovorax paradoxus S110 7972384 YP_002944514.1 CDS Vapar_2623 NC_012791.1 2767241 2767909 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dia:Dtpsy_1474 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 2767241..2767909 Variovorax paradoxus S110 7972385 YP_002944515.1 CDS Vapar_2624 NC_012791.1 2768088 2770004 D KEGG: dia:Dtpsy_1475 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; ATP-dependent metalloprotease FtsH 2768088..2770004 Variovorax paradoxus S110 7972386 YP_002944516.1 CDS Vapar_2625 NC_012791.1 2770068 2770928 D KEGG: dia:Dtpsy_1476 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 2770068..2770928 Variovorax paradoxus S110 7972387 YP_002944517.1 CDS glmM NC_012791.1 2770955 2772292 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 2770955..2772292 Variovorax paradoxus S110 7972388 YP_002944518.1 CDS Vapar_2627 NC_012791.1 2772295 2772774 D PFAM: GCN5-related N-acetyltransferase; KEGG: pna:Pnap_2590 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferaser 2772295..2772774 Variovorax paradoxus S110 7972389 YP_002944519.1 CDS Vapar_2628 NC_012791.1 2772821 2774092 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: aav:Aave_3077 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein complement(2772821..2774092) Variovorax paradoxus S110 7972390 YP_002944520.1 CDS Vapar_2629 NC_012791.1 2774123 2775229 R PFAM: aminoglycoside phosphotransferase; KEGG: aav:Aave_3076 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(2774123..2775229) Variovorax paradoxus S110 7972391 YP_002944521.1 CDS Vapar_2630 NC_012791.1 2775231 2775950 R PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: aav:Aave_3075 Crp/FNR family transcriptional regulator; Crp/Fnr family transcriptional regulator complement(2775231..2775950) Variovorax paradoxus S110 7972392 YP_002944522.1 CDS Vapar_2631 NC_012791.1 2776010 2776789 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2776010..2776789) Variovorax paradoxus S110 7972393 YP_002944523.1 CDS Vapar_2632 NC_012791.1 2776825 2778345 R converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxy-acyl-CoA dehydrogenase complement(2776825..2778345) Variovorax paradoxus S110 7972394 YP_002944524.1 CDS Vapar_2633 NC_012791.1 2778479 2779639 R PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A1819 transporter; major facilitator superfamily protein complement(2778479..2779639) Variovorax paradoxus S110 7972395 YP_002944525.1 CDS Vapar_2634 NC_012791.1 2779644 2780651 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: pol:Bpro_2956 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(2779644..2780651) Variovorax paradoxus S110 7972396 YP_002944526.1 CDS Vapar_2635 NC_012791.1 2780743 2781111 R KEGG: rfr:Rfer_2995 hypothetical protein; hypothetical protein complement(2780743..2781111) Variovorax paradoxus S110 7972397 YP_002944527.1 CDS Vapar_2636 NC_012791.1 2781240 2781923 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(2781240..2781923) Variovorax paradoxus S110 7972398 YP_002944528.1 CDS Vapar_2637 NC_012791.1 2781997 2782986 D PFAM: Asparaginase/glutaminase; KEGG: pol:Bpro_2953 asparaginase; Asparaginase 2781997..2782986 Variovorax paradoxus S110 7972399 YP_002944529.1 CDS adk NC_012791.1 2783014 2783670 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2783014..2783670) Variovorax paradoxus S110 7972400 YP_002944530.1 CDS Vapar_2639 NC_012791.1 2783807 2784580 R KEGG: dac:Daci_3568 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(2783807..2784580) Variovorax paradoxus S110 7972401 YP_002944531.1 CDS Vapar_2640 NC_012791.1 2784577 2784759 R PFAM: protein of unknown function DUF343; KEGG: rfr:Rfer_3156 hypothetical protein; hypothetical protein complement(2784577..2784759) Variovorax paradoxus S110 7972402 YP_002944532.1 CDS lpxK NC_012791.1 2784740 2785780 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(2784740..2785780) Variovorax paradoxus S110 7972403 YP_002944533.1 CDS Vapar_2642 NC_012791.1 2785781 2786224 R PFAM: biopolymertransporter ExbD/TolR; KEGG: aav:Aave_2565 biopolymer transport protein ExbD/TolR; biopolymertransporter ExbD/TolR complement(2785781..2786224) Variovorax paradoxus S110 7972404 YP_002944534.1 CDS Vapar_2643 NC_012791.1 2786280 2786912 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: rfr:Rfer_3153 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(2786280..2786912) Variovorax paradoxus S110 7972405 YP_002944535.1 CDS Vapar_2644 NC_012791.1 2787226 2788536 D KEGG: dia:Dtpsy_1557 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 2787226..2788536 Variovorax paradoxus S110 7972406 YP_002944536.1 CDS Vapar_2645 NC_012791.1 2788587 2789168 D PFAM: manganese and iron superoxide dismutase; KEGG: aav:Aave_2568 superoxide dismutase; superoxide dismutase 2788587..2789168 Variovorax paradoxus S110 7972407 YP_002944537.1 CDS Vapar_2646 NC_012791.1 2789241 2789699 R PFAM: protein of unknown function DUF192; KEGG: aav:Aave_2570 hypothetical protein; hypothetical protein complement(2789241..2789699) Variovorax paradoxus S110 7972408 YP_002944538.1 CDS Vapar_2647 NC_012791.1 2789788 2789982 R KEGG: har:HEAR2673 signal peptide; signal peptide complement(2789788..2789982) Variovorax paradoxus S110 7972409 YP_002944539.1 CDS Vapar_2648 NC_012791.1 2790136 2790459 R KEGG: pna:Pnap_1929 TolA protein; TolA protein complement(2790136..2790459) Variovorax paradoxus S110 7972410 YP_002944540.1 CDS Vapar_2649 NC_012791.1 2790679 2791938 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 2790679..2791938 Variovorax paradoxus S110 7972411 YP_002944541.1 CDS Vapar_2650 NC_012791.1 2792244 2792603 D PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: vei:Veis_4483 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 2792244..2792603 Variovorax paradoxus S110 7972412 YP_002944542.1 CDS Vapar_2651 NC_012791.1 2792671 2794992 D KEGG: pol:Bpro_2940 ATPase AAA-2; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; ATP-dependent Clp protease, ATP-binding subunit clpA 2792671..2794992 Variovorax paradoxus S110 7972413 YP_002944543.1 CDS Vapar_2652 NC_012791.1 2795103 2796548 D PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: dac:Daci_3504 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 2795103..2796548 Variovorax paradoxus S110 7972414 YP_002944544.1 CDS sbcB NC_012791.1 2796549 2797988 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2796549..2797988 Variovorax paradoxus S110 7972415 YP_002944545.1 CDS Vapar_2654 NC_012791.1 2797993 2799273 R Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase complement(2797993..2799273) Variovorax paradoxus S110 7972416 YP_002944546.1 CDS Vapar_2655 NC_012791.1 2799354 2799806 R KEGG: aav:Aave_4249 hypothetical protein; hypothetical protein complement(2799354..2799806) Variovorax paradoxus S110 7972417 YP_002944547.1 CDS Vapar_2656 NC_012791.1 2799809 2800732 R PFAM: inner-membrane translocator; KEGG: vei:Veis_4429 inner-membrane translocator; inner-membrane translocator complement(2799809..2800732) Variovorax paradoxus S110 7972418 YP_002944548.1 CDS Vapar_2657 NC_012791.1 2800863 2801927 R PFAM: inner-membrane translocator; KEGG: lch:Lcho_3577 inner-membrane translocator; inner-membrane translocator complement(2800863..2801927) Variovorax paradoxus S110 7972419 YP_002944549.1 CDS Vapar_2658 NC_012791.1 2801924 2803528 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: lch:Lcho_3576 ABC transporter-related protein; ABC transporter complement(2801924..2803528) Variovorax paradoxus S110 7972420 YP_002944550.1 CDS Vapar_2659 NC_012791.1 2803665 2804609 R PFAM: purine or other phosphorylase family 1; KEGG: vei:Veis_4426 methylthioadenosine nucleosidase; adenosylhomocysteine nucleosidase complement(2803665..2804609) Variovorax paradoxus S110 7972421 YP_002944551.1 CDS Vapar_2660 NC_012791.1 2804618 2805622 R PFAM: basic membrane lipoprotein; KEGG: lch:Lcho_3575 basic membrane lipoprotein; basic membrane lipoprotein complement(2804618..2805622) Variovorax paradoxus S110 7972422 YP_002944552.1 CDS upp NC_012791.1 2805694 2806323 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2805694..2806323) Variovorax paradoxus S110 7972423 YP_002944553.1 CDS Vapar_2662 NC_012791.1 2806360 2807775 R PFAM: protein of unknown function DUF1688; KEGG: pol:Bpro_1964 protein of unknown function DUF1688; hypothetical protein complement(2806360..2807775) Variovorax paradoxus S110 7972424 YP_002944554.1 CDS Vapar_2663 NC_012791.1 2807772 2809124 R KEGG: pol:Bpro_1965 hypothetical protein; hypothetical protein complement(2807772..2809124) Variovorax paradoxus S110 7972425 YP_002944555.1 CDS Vapar_2664 NC_012791.1 2809239 2809706 R KEGG: mpt:Mpe_A3195 hypothetical protein; hypothetical protein complement(2809239..2809706) Variovorax paradoxus S110 7972426 YP_002944556.1 CDS Vapar_2665 NC_012791.1 2809721 2810140 R KEGG: mpt:Mpe_A3196 hypothetical protein; hypothetical protein complement(2809721..2810140) Variovorax paradoxus S110 7972427 YP_002944557.1 CDS Vapar_2666 NC_012791.1 2810336 2810902 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2810336..2810902 Variovorax paradoxus S110 7972428 YP_002944558.1 CDS Vapar_2667 NC_012791.1 2810899 2811540 D PFAM: protein of unknown function DUF1109; KEGG: ppw:PputW619_2193 hypothetical protein; hypothetical protein 2810899..2811540 Variovorax paradoxus S110 7972429 YP_002944559.1 CDS Vapar_2668 NC_012791.1 2811564 2813078 R PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: dia:Dtpsy_1702 protein of unknown function DUF853 NPT hydrolase; hypothetical protein complement(2811564..2813078) Variovorax paradoxus S110 7972430 YP_002944560.1 CDS Vapar_2669 NC_012791.1 2813180 2813491 D KEGG: mpt:Mpe_A1316 acyl carrier protein; acyl carrier protein 2813180..2813491 Variovorax paradoxus S110 7972431 YP_002944561.1 CDS Vapar_2670 NC_012791.1 2813495 2814139 D KEGG: mpt:Mpe_A1317 transmembrane protein; transmembrane protein 2813495..2814139 Variovorax paradoxus S110 7972432 YP_002944562.1 CDS Vapar_2671 NC_012791.1 2814157 2815866 D PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: mpt:Mpe_A1318 CoA ligase (AMP forming); beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 2814157..2815866 Variovorax paradoxus S110 7972819 YP_002944563.1 CDS Vapar_2672 NC_012791.1 2815866 2816864 D KEGG: mpt:Mpe_A1320 hypothetical protein; hypothetical protein 2815866..2816864 Variovorax paradoxus S110 7972271 YP_002944564.1 CDS Vapar_2673 NC_012791.1 2816836 2817450 D KEGG: mpt:Mpe_A1321 hypothetical protein; hypothetical protein 2816836..2817450 Variovorax paradoxus S110 7972272 YP_002944565.1 CDS Vapar_2674 NC_012791.1 2817447 2819855 D KEGG: mpt:Mpe_A1322 hypothetical protein; hypothetical protein 2817447..2819855 Variovorax paradoxus S110 7972273 YP_002944566.1 CDS Vapar_2675 NC_012791.1 2819855 2820697 D PFAM: polysaccharide deacetylase; KEGG: mpt:Mpe_A1323 polysaccharide deacetylase family protein; polysaccharide deacetylase 2819855..2820697 Variovorax paradoxus S110 7972274 YP_002944567.1 CDS Vapar_2676 NC_012791.1 2820694 2821476 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: har:HEAR2868 hypothetical protein; type 11 methyltransferase 2820694..2821476 Variovorax paradoxus S110 7972275 YP_002944568.1 CDS Vapar_2677 NC_012791.1 2821473 2821946 D KEGG: mpt:Mpe_A1326 potential 3-hydroxydecyl-(acyl carrier protein) dehydratase; potential 3-hydroxydecyl-(acyl carrier protein) dehydratase 2821473..2821946 Variovorax paradoxus S110 7972276 YP_002944569.1 CDS fabG NC_012791.1 2821943 2822674 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 2821943..2822674 Variovorax paradoxus S110 7972277 YP_002944570.1 CDS Vapar_2679 NC_012791.1 2823140 2823916 R PFAM: glycosyl transferase family 2; KEGG: mpt:Mpe_A1328 glycosyl transferase family protein; family 2 glycosyl transferase complement(2823140..2823916) Variovorax paradoxus S110 7972278 YP_002944571.1 CDS Vapar_2680 NC_012791.1 2823883 2824686 R PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: mpt:Mpe_A1329 acyltransferase; phospholipid/glycerol acyltransferase complement(2823883..2824686) Variovorax paradoxus S110 7972279 YP_002944572.1 CDS Vapar_2681 NC_012791.1 2824717 2825748 R PFAM: endoribonuclease L-PSP; KEGG: mpt:Mpe_A1331 hypothetical protein; endoribonuclease L-PSP complement(2824717..2825748) Variovorax paradoxus S110 7972280 YP_002944573.1 CDS Vapar_2682 NC_012791.1 2825751 2826539 R PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: mpt:Mpe_A1333 demethylmenaquinone methyltransferase; type 11 methyltransferase complement(2825751..2826539) Variovorax paradoxus S110 7972281 YP_002944574.1 CDS Vapar_2683 NC_012791.1 2826658 2827383 D PFAM: protein of unknown function DUF28; KEGG: rfr:Rfer_2075 hypothetical protein; hypothetical protein 2826658..2827383 Variovorax paradoxus S110 7972282 YP_002944575.1 CDS Vapar_2684 NC_012791.1 2827422 2828720 D KEGG: ajs:Ajs_1899 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; phosphoribosylamine/glycine ligase 2827422..2828720 Variovorax paradoxus S110 7972283 YP_002944576.1 CDS Vapar_2685 NC_012791.1 2828720 2829637 D PFAM: coproporphyrinogen III oxidase; KEGG: pol:Bpro_1970 coproporphyrinogen III oxidase; coproporphyrinogen oxidase 2828720..2829637 Variovorax paradoxus S110 7972284 YP_002944577.1 CDS Vapar_2686 NC_012791.1 2829634 2830263 D KEGG: pol:Bpro_1971 nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 2829634..2830263 Variovorax paradoxus S110 7972285 YP_002944578.1 CDS Vapar_2687 NC_012791.1 2830263 2830928 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: aav:Aave_3200 iojap-like protein; iojap-like protein 2830263..2830928 Variovorax paradoxus S110 7972286 YP_002944579.1 CDS Vapar_2688 NC_012791.1 2830925 2831392 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2830925..2831392 Variovorax paradoxus S110 7972287 YP_002944580.1 CDS Vapar_2689 NC_012791.1 2831389 2831994 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: ajs:Ajs_1903 maf protein; maf protein 2831389..2831994 Variovorax paradoxus S110 7972288 YP_002944581.1 CDS Vapar_2690 NC_012791.1 2832001 2833527 D KEGG: rfr:Rfer_2082 ribonuclease; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; ribonuclease, Rne/Rng family 2832001..2833527 Variovorax paradoxus S110 7972289 YP_002944582.1 CDS Vapar_2691 NC_012791.1 2833535 2835256 R KEGG: dia:Dtpsy_1982 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(2833535..2835256) Variovorax paradoxus S110 7972290 YP_002944583.1 CDS tolB NC_012791.1 2835571 2836797 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2835571..2836797 Variovorax paradoxus S110 7972291 YP_002944584.1 CDS Vapar_2693 NC_012791.1 2836823 2837341 D TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: aav:Aave_3405 OmpA domain-containing protein; peptidoglycan-associated lipoprotein 2836823..2837341 Variovorax paradoxus S110 7972292 YP_002944585.1 CDS Vapar_2694 NC_012791.1 2837341 2838090 D TIGRFAM: tol-pal system protein YbgF; PFAM: hypothetical protein; hypotheticalprotein; KEGG: aav:Aave_3404 hypotheticalprotein; tol-pal system protein YbgF 2837341..2838090 Variovorax paradoxus S110 7972293 YP_002944586.1 CDS Vapar_2695 NC_012791.1 2838158 2838952 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dac:Daci_3397 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 2838158..2838952 Variovorax paradoxus S110 7972294 YP_002944587.1 CDS Vapar_2697 NC_012791.1 2840333 2840713 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rce:RC1_3607 DNA-binding protein; XRE family transcriptional regulator complement(2840333..2840713) Variovorax paradoxus S110 7972297 YP_002944588.1 CDS Vapar_2698 NC_012791.1 2840819 2841199 R hypothetical protein complement(2840819..2841199) Variovorax paradoxus S110 7972298 YP_002944589.1 CDS Vapar_2699 NC_012791.1 2841407 2842201 D KEGG: aba:Acid345_3545 hypothetical protein; hypothetical protein 2841407..2842201 Variovorax paradoxus S110 7972299 YP_002944590.1 CDS Vapar_2700 NC_012791.1 2843999 2844760 R hypothetical protein complement(2843999..2844760) Variovorax paradoxus S110 7972300 YP_002944591.1 CDS Vapar_2701 NC_012791.1 2845214 2845792 R hypothetical protein complement(2845214..2845792) Variovorax paradoxus S110 7972301 YP_002944592.1 CDS Vapar_2702 NC_012791.1 2845954 2846757 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA270 transposition helper protein; IstB domain-containing protein ATP-binding protein complement(2845954..2846757) Variovorax paradoxus S110 7972302 YP_002944593.1 CDS Vapar_2703 NC_012791.1 2846754 2848247 R KEGG: eba:p2A256 transposase; transposase complement(2846754..2848247) Variovorax paradoxus S110 7972303 YP_002944594.1 CDS Vapar_2704 NC_012791.1 2848775 2849041 R hypothetical protein complement(2848775..2849041) Variovorax paradoxus S110 7972304 YP_002944595.1 CDS Vapar_2705 NC_012791.1 2849135 2849494 R hypothetical protein complement(2849135..2849494) Variovorax paradoxus S110 7972305 YP_002944596.1 CDS Vapar_2706 NC_012791.1 2849491 2849985 R hypothetical protein complement(2849491..2849985) Variovorax paradoxus S110 7972306 YP_002944597.1 CDS Vapar_2708 NC_012791.1 2851198 2851368 R hypothetical protein complement(2851198..2851368) Variovorax paradoxus S110 7972308 YP_002944598.1 CDS Vapar_2709 NC_012791.1 2851530 2853032 D PFAM: hypotheticalprotein; SMART: hypothetical protein; KEGG: vvy:VV1889 hypothetical protein; hypothetical protein 2851530..2853032 Variovorax paradoxus S110 7972309 YP_002944599.1 CDS Vapar_2710 NC_012791.1 2853921 2854190 R hypothetical protein complement(2853921..2854190) Variovorax paradoxus S110 7972310 YP_002944600.1 CDS Vapar_2712 NC_012791.1 2855977 2856747 R KEGG: tbd:Tbd_0816 hypothetical protein; hypothetical protein complement(2855977..2856747) Variovorax paradoxus S110 7972312 YP_002944601.1 CDS Vapar_2713 NC_012791.1 2857313 2857981 R PFAM: peptidase S24 and S26 domain protein; KEGG: dac:Daci_1929 peptidase S24/S26 domain-containing protein; XRE family transcriptional regulator complement(2857313..2857981) Variovorax paradoxus S110 7972313 YP_002944602.1 CDS Vapar_2714 NC_012791.1 2858420 2858923 R KEGG: aav:Aave_2832 hypothetical protein; hypothetical protein complement(2858420..2858923) Variovorax paradoxus S110 7972314 YP_002944603.1 CDS Vapar_2715 NC_012791.1 2858949 2860901 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aav:Aave_2480 ABC transporter-related protein; ABC transporter complement(2858949..2860901) Variovorax paradoxus S110 7972315 YP_002944604.1 CDS Vapar_2716 NC_012791.1 2861044 2861925 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2861044..2861925) Variovorax paradoxus S110 7972316 YP_002944605.1 CDS Vapar_2717 NC_012791.1 2861987 2863162 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2861987..2863162) Variovorax paradoxus S110 7972317 YP_002944606.1 CDS Vapar_2718 NC_012791.1 2863179 2864327 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pna:Pnap_1811 twitching motility protein; twitching motility protein complement(2863179..2864327) Variovorax paradoxus S110 7972318 YP_002944607.1 CDS Vapar_2719 NC_012791.1 2864362 2865195 R TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: dia:Dtpsy_1890 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase complement(2864362..2865195) Variovorax paradoxus S110 7972319 YP_002944608.1 CDS Vapar_2720 NC_012791.1 2865240 2866451 R catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase complement(2865240..2866451) Variovorax paradoxus S110 7972320 YP_002944609.1 CDS Vapar_2721 NC_012791.1 2866526 2867164 R PFAM: lysine exporter (LYSE/YGGA); KEGG: dac:Daci_4577 lysine exporter protein LysE/YggA; lysine exporter LysE/YggA complement(2866526..2867164) Variovorax paradoxus S110 7972321 YP_002944610.1 CDS Vapar_2722 NC_012791.1 2867190 2868536 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(2867190..2868536) Variovorax paradoxus S110 7972322 YP_002944611.1 CDS Vapar_2723 NC_012791.1 2868687 2872556 D KEGG: rfr:Rfer_2106 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; ATPase AAA; ATP-dependent helicase HrpA 2868687..2872556 Variovorax paradoxus S110 7972323 YP_002944612.1 CDS Vapar_2724 NC_012791.1 2872625 2872783 R KEGG: pzu:PHZ_c2987 hypothetical protein; hypothetical protein complement(2872625..2872783) Variovorax paradoxus S110 7972324 YP_002944613.1 CDS Vapar_2725 NC_012791.1 2872919 2874094 R catalyzes the transfer of an amino moiety; aminotransferase complement(2872919..2874094) Variovorax paradoxus S110 7972325 YP_002944614.1 CDS Vapar_2726 NC_012791.1 2874133 2875074 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_3166 transcriptional regulator CysB-like protein; transcriptional regulator CysB-like protein complement(2874133..2875074) Variovorax paradoxus S110 7972326 YP_002944615.1 CDS Vapar_2727 NC_012791.1 2875138 2875512 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: aav:Aave_3165 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein complement(2875138..2875512) Variovorax paradoxus S110 7972327 YP_002944616.1 CDS Vapar_2728 NC_012791.1 2875519 2876628 R PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2114 permease YjgP/YjgQ; permease YjgP/YjgQ family protein complement(2875519..2876628) Variovorax paradoxus S110 7972328 YP_002944617.1 CDS Vapar_2729 NC_012791.1 2876625 2877764 R PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2115 permease YjgP/YjgQ; permease YjgP/YjgQ family protein complement(2876625..2877764) Variovorax paradoxus S110 7972329 YP_002944618.1 CDS Vapar_2730 NC_012791.1 2877786 2879321 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: pol:Bpro_2408 PepA aminopeptidase. metallo peptidase. MEROPS family M17; leucyl aminopeptidase 2877786..2879321 Variovorax paradoxus S110 7972330 YP_002944619.1 CDS Vapar_2731 NC_012791.1 2879318 2879761 D KEGG: rfr:Rfer_2117 DNA polymerase III subunit chi; DNA polymerase III subunit chi 2879318..2879761 Variovorax paradoxus S110 7972331 YP_002944620.1 CDS Vapar_2732 NC_012791.1 2879761 2880168 D KEGG: dia:Dtpsy_1727 hypothetical protein; hypothetical protein 2879761..2880168 Variovorax paradoxus S110 7972332 YP_002944621.1 CDS Vapar_2733 NC_012791.1 2880304 2881509 D PFAM: extracellular ligand-binding receptor; KEGG: lch:Lcho_2592 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2880304..2881509 Variovorax paradoxus S110 7972333 YP_002944622.1 CDS Vapar_2734 NC_012791.1 2881573 2881965 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: aav:Aave_3861 response regulator receiver protein; response regulator receiver protein complement(2881573..2881965) Variovorax paradoxus S110 7972334 YP_002944623.1 CDS Vapar_2735 NC_012791.1 2882065 2882421 R KEGG: pna:Pnap_0075 hypothetical protein; hypothetical protein complement(2882065..2882421) Variovorax paradoxus S110 7972335 YP_002944624.1 CDS Vapar_2736 NC_012791.1 2882737 2883666 R PFAM: band 7 protein; SMART: band 7 protein; KEGG: aav:Aave_3259 SPFH domain-containing protein/band 7 family protein; hypothetical protein complement(2882737..2883666) Variovorax paradoxus S110 7972337 YP_002944625.1 CDS Vapar_2737 NC_012791.1 2883695 2884120 R KEGG: rfr:Rfer_2125 hypothetical protein; hypothetical protein complement(2883695..2884120) Variovorax paradoxus S110 7972338 YP_002944626.1 CDS Vapar_2738 NC_012791.1 2884229 2886532 D PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pol:Bpro_2415 ornithine decarboxylase; Lysine decarboxylase 2884229..2886532 Variovorax paradoxus S110 7972339 YP_002944627.1 CDS Vapar_2739 NC_012791.1 2886566 2887417 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(2886566..2887417) Variovorax paradoxus S110 7972340 YP_002944628.1 CDS Vapar_2740 NC_012791.1 2887451 2888233 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_2419 enoyl-[acyl-carrier-protein] reductase [NADH]; short-chain dehydrogenase/reductase SDR complement(2887451..2888233) Variovorax paradoxus S110 7972341 YP_002944629.1 CDS Vapar_2741 NC_012791.1 2888271 2890067 D PFAM: extracellular solute-binding protein family 5; KEGG: pna:Pnap_2017 extracellular solute-binding protein; family 5 extracellular solute-binding protein 2888271..2890067 Variovorax paradoxus S110 7972342 YP_002944630.1 CDS Vapar_2742 NC_012791.1 2890095 2891129 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2421 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2890095..2891129 Variovorax paradoxus S110 7972343 YP_002944631.1 CDS Vapar_2743 NC_012791.1 2891122 2892168 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2422 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2891122..2892168 Variovorax paradoxus S110 7972344 YP_002944632.1 CDS Vapar_2744 NC_012791.1 2892165 2893799 D PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: pna:Pnap_2014 ABC transporter; ABC transporter 2892165..2893799 Variovorax paradoxus S110 7972345 YP_002944633.1 CDS Vapar_2745 NC_012791.1 2893819 2895018 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_2822 protein of unknown function DUF1228; hypothetical protein 2893819..2895018 Variovorax paradoxus S110 7972346 YP_002944634.1 CDS Vapar_2746 NC_012791.1 2895188 2895826 D PFAM: protein of unknown function DUF150; KEGG: aav:Aave_3385 hypothetical protein; hypothetical protein 2895188..2895826 Variovorax paradoxus S110 7972347 YP_002944635.1 CDS Vapar_2747 NC_012791.1 2895844 2897328 D KEGG: dia:Dtpsy_1246 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; NusA antitermination factor 2895844..2897328 Variovorax paradoxus S110 7972348 YP_002944636.1 CDS Vapar_2748 NC_012791.1 2897353 2900307 D TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Initiation factor 2 associated domain protein ; elongation factor Tu domain 2 protein; GTP-binding protein HSR1-related; translation initiation factor IF-2 domain protein; Miro domain protein; KEGG: aav:Aave_3383 translation initiation factor 2; translation initiation factor IF-2 2897353..2900307 Variovorax paradoxus S110 7972349 YP_002944637.1 CDS rbfA NC_012791.1 2900332 2900703 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 2900332..2900703 Variovorax paradoxus S110 7972350 YP_002944638.1 CDS truB NC_012791.1 2900706 2901662 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 2900706..2901662 Variovorax paradoxus S110 7972351 YP_002944639.1 CDS Vapar_2751 NC_012791.1 2901659 2903494 D TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: pna:Pnap_2008 GTP-binding protein TypA; GTP-binding protein TypA 2901659..2903494 Variovorax paradoxus S110 7972678 YP_002944640.1 CDS Vapar_2752 NC_012791.1 2903508 2904437 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: rfr:Rfer_2138 hypothetical protein; hypothetical protein 2903508..2904437 Variovorax paradoxus S110 7970965 YP_002944641.1 CDS Vapar_2753 NC_012791.1 2904520 2904915 R PFAM: Secreted repeat of unknown function; KEGG: rfr:Rfer_2547 hypothetical protein; hypothetical protein complement(2904520..2904915) Variovorax paradoxus S110 7970966 YP_002944642.1 CDS Vapar_2754 NC_012791.1 2904988 2905803 R KEGG: rfr:Rfer_2549 transmembrane transcriptional regulator; transmembrane anti-sigma factor complement(2904988..2905803) Variovorax paradoxus S110 7970967 YP_002944643.1 CDS Vapar_2755 NC_012791.1 2905820 2906335 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: rfr:Rfer_2548 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 subunit complement(2905820..2906335) Variovorax paradoxus S110 7970968 YP_002944644.1 CDS Vapar_2756 NC_012791.1 2906360 2906740 R PFAM: Secreted repeat of unknown function; KEGG: rfr:Rfer_2547 hypothetical protein; hypothetical protein complement(2906360..2906740) Variovorax paradoxus S110 7970969 YP_002944645.1 CDS smpB NC_012791.1 2906835 2907311 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(2906835..2907311) Variovorax paradoxus S110 7970970 YP_002944646.1 CDS Vapar_2758 NC_012791.1 2907374 2907820 D PFAM: cyclase/dehydrase; KEGG: aav:Aave_3373 cyclase/dehydrase; cyclase/dehydrase 2907374..2907820 Variovorax paradoxus S110 7970971 YP_002944647.1 CDS Vapar_2759 NC_012791.1 2907820 2908155 D PFAM: protein of unknown function UPF0125; KEGG: pna:Pnap_2003 hypothetical protein; hypothetical protein 2907820..2908155 Variovorax paradoxus S110 7970972 YP_002944648.1 CDS Vapar_2760 NC_012791.1 2908171 2908683 R KEGG: pna:Pnap_2002 hypothetical protein; hypothetical protein complement(2908171..2908683) Variovorax paradoxus S110 7970973 YP_002944649.1 CDS Vapar_2761 NC_012791.1 2908863 2910332 D KEGG: aav:Aave_3370 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 2908863..2910332 Variovorax paradoxus S110 7970974 YP_002944650.1 CDS Vapar_2762 NC_012791.1 2910421 2910669 D TIGRFAM: prevent-host-death family protein; KEGG: dac:Daci_3011 prevent-host-death family protein; prevent-host-death family protein 2910421..2910669 Variovorax paradoxus S110 7970975 YP_002944651.1 CDS Vapar_2763 NC_012791.1 2910681 2911100 D KEGG: aav:Aave_3368 hypothetical protein; hypothetical protein 2910681..2911100 Variovorax paradoxus S110 7970976 YP_002944652.1 CDS guaA NC_012791.1 2911112 2912731 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2911112..2912731 Variovorax paradoxus S110 7970977 YP_002944653.1 CDS Vapar_2765 NC_012791.1 2912851 2913228 R PFAM: helix-turn-helix HxlR type; KEGG: bxe:Bxe_B1097 transcriptional regulator; HxlR family transcriptional regulator complement(2912851..2913228) Variovorax paradoxus S110 7970978 YP_002944654.1 CDS Vapar_2766 NC_012791.1 2913339 2914073 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B1096 glucose dehydrogenase; short-chain dehydrogenase/reductase SDR 2913339..2914073 Variovorax paradoxus S110 7970979 YP_002944655.1 CDS Vapar_2767 NC_012791.1 2914097 2914696 D PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bpy:Bphyt_5868 NADP oxidoreductase coenzyme F420-dependent; NADP oxidoreductase coenzyme F420-dependent 2914097..2914696 Variovorax paradoxus S110 7970980 YP_002944656.1 CDS Vapar_2768 NC_012791.1 2914780 2915676 R PFAM: arginase/agmatinase/formiminoglutamase; KEGG: smd:Smed_5245 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase complement(2914780..2915676) Variovorax paradoxus S110 7970981 YP_002944657.1 CDS Vapar_2769 NC_012791.1 2915705 2916622 R PFAM: alpha/beta hydrolase fold; KEGG: bph:Bphy_6462 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein complement(2915705..2916622) Variovorax paradoxus S110 7970982 YP_002944658.1 CDS Vapar_2770 NC_012791.1 2916710 2917258 R KEGG: mlo:mll4748 contains similarity to auxin-binding protein; auxin-binding protein-like protein complement(2916710..2917258) Variovorax paradoxus S110 7970983 YP_002944659.1 CDS Vapar_2771 NC_012791.1 2917326 2919305 R KEGG: bpt:Bpet3503 propionate catabolism operon regulator; TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Propionate catabolism activator domain protein; PAS fold domain protein; hypothetical protein; SMART: ATPase AAA; PAS domain containing protein; proprionate catabolism activator, Fis family complement(2917326..2919305) Variovorax paradoxus S110 7970984 YP_002944660.1 CDS Vapar_2772 NC_012791.1 2919455 2920654 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB3125 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 2919455..2920654 Variovorax paradoxus S110 7970985 YP_002944661.1 CDS Vapar_2773 NC_012791.1 2920651 2921592 D PFAM: pyruvate carboxyltransferase; KEGG: bbr:BB3124 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 2920651..2921592 Variovorax paradoxus S110 7970986 YP_002944662.1 CDS Vapar_2774 NC_012791.1 2921589 2922590 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0869 hypothetical protein; hypothetical protein 2921589..2922590 Variovorax paradoxus S110 7970987 YP_002944663.1 CDS Vapar_2775 NC_012791.1 2922597 2923460 D KEGG: bbt:BBta_1130 2,3-dimethylmalate lyase; 2,3-dimethylmalate lyase 2922597..2923460 Variovorax paradoxus S110 7970988 YP_002944664.1 CDS Vapar_2776 NC_012791.1 2923495 2924493 D PFAM: conserved hypothetical protein; KEGG: bbr:BB3123 hypothetical protein; hypothetical protein 2923495..2924493 Variovorax paradoxus S110 7970989 YP_002944665.1 CDS Vapar_2777 NC_012791.1 2924537 2925505 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_4876 uncharacterized protein UPF0065; hypothetical protein complement(2924537..2925505) Variovorax paradoxus S110 7970990 YP_002944666.1 CDS Vapar_2778 NC_012791.1 2925664 2926572 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: spe:Spro_1405 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2925664..2926572) Variovorax paradoxus S110 7970991 YP_002944667.1 CDS Vapar_2779 NC_012791.1 2926707 2927615 D KEGG: dar:Daro_0369 hypothetical protein; hypothetical protein 2926707..2927615 Variovorax paradoxus S110 7970992 YP_002944668.1 CDS Vapar_2780 NC_012791.1 2927623 2928012 D PFAM: endoribonuclease L-PSP; KEGG: bja:bll4888 hypothetical protein; endoribonuclease L-PSP 2927623..2928012 Variovorax paradoxus S110 7970993 YP_002944669.1 CDS Vapar_2781 NC_012791.1 2928019 2928924 D PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: bpy:Bphyt_1482 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase fold-3 domain-containing protein 2928019..2928924 Variovorax paradoxus S110 7970994 YP_002944670.1 CDS Vapar_2782 NC_012791.1 2929243 2929986 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0001066 probable zinc ABC transporter ATP-binding protein; ABC transporter 2929243..2929986 Variovorax paradoxus S110 7970995 YP_002944671.1 CDS Vapar_2783 NC_012791.1 2930042 2930917 D PFAM: ABC transporter; KEGG: pst:PSPTO_2634 cation ABC transporter permease protein; ABC transporter permease 2930042..2930917 Variovorax paradoxus S110 7970996 YP_002944672.1 CDS Vapar_2784 NC_012791.1 2930919 2931824 D PFAM: periplasmic solute binding protein; KEGG: lch:Lcho_3560 periplasmic solute binding protein; periplasmic solute binding protein 2930919..2931824 Variovorax paradoxus S110 7970997 YP_002944673.1 CDS Vapar_2786 NC_012791.1 2932895 2933467 R PFAM: intradiol ring-cleavage dioxygenase; KEGG: pol:Bpro_3458 intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase complement(2932895..2933467) Variovorax paradoxus S110 7970999 YP_002944674.1 CDS Vapar_2787 NC_012791.1 2933626 2934246 D TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: rfr:Rfer_2222 hypothetical protein; 2'-5' RNA ligase 2933626..2934246 Variovorax paradoxus S110 7971000 YP_002944675.1 CDS Vapar_2788 NC_012791.1 2934346 2934837 D PFAM: endoribonuclease L-PSP; KEGG: pfl:PFL_5214 translation initiation inhibitor; endoribonuclease L-PSP 2934346..2934837 Variovorax paradoxus S110 7971001 YP_002944676.1 CDS Vapar_2789 NC_012791.1 2934834 2935913 R PFAM: protein of unknown function DUF72; KEGG: cja:CJA_1596 hypothetical protein; hypothetical protein complement(2934834..2935913) Variovorax paradoxus S110 7971002 YP_002944677.1 CDS Vapar_2790 NC_012791.1 2935975 2937474 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_4100 periplasmic sensor signal transduction histidine kinase; histidine kinase 2935975..2937474 Variovorax paradoxus S110 7971003 YP_002944678.1 CDS Vapar_2791 NC_012791.1 2937471 2938112 D PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: pol:Bpro_4101 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2937471..2938112 Variovorax paradoxus S110 7971004 YP_002944679.1 CDS Vapar_2792 NC_012791.1 2938250 2938753 D PFAM: protein of unknown function DUF336; KEGG: lch:Lcho_0150 hypothetical protein; hypothetical protein 2938250..2938753 Variovorax paradoxus S110 7971005 YP_002944680.1 CDS Vapar_2793 NC_012791.1 2938753 2939451 D SMART: ankyrin; KEGG: pol:Bpro_4103 ankyrin; ankyrin 2938753..2939451 Variovorax paradoxus S110 7971006 YP_002944681.1 CDS Vapar_2794 NC_012791.1 2939497 2940141 D PFAM: negative transcriptional regulator; KEGG: vei:Veis_0716 FMN-binding negative transcriptional regulator; FMN-binding negative transcriptional regulator 2939497..2940141 Variovorax paradoxus S110 7971007 YP_002944682.1 CDS Vapar_2795 NC_012791.1 2940143 2940346 D KEGG: ajs:Ajs_2283 hypothetical protein; hypothetical protein 2940143..2940346 Variovorax paradoxus S110 7971008 YP_002944683.1 CDS Vapar_2796 NC_012791.1 2940336 2941445 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: aav:Aave_3082 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 2940336..2941445 Variovorax paradoxus S110 7971009 YP_002944684.1 CDS Vapar_2797 NC_012791.1 2941442 2942407 D PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: pol:Bpro_2448 muramoyltetrapeptide carboxypeptidase; Muramoyltetrapeptide carboxypeptidase 2941442..2942407 Variovorax paradoxus S110 7971010 YP_002944685.1 CDS Vapar_2798 NC_012791.1 2942430 2942666 R KEGG: pol:Bpro_2449 hypothetical protein; hypothetical protein complement(2942430..2942666) Variovorax paradoxus S110 7971011 YP_002944686.1 CDS Vapar_2799 NC_012791.1 2942939 2943886 D PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: rfr:Rfer_2284 adenylate/guanylate cyclase; adenylate/guanylate cyclase 2942939..2943886 Variovorax paradoxus S110 7971012 YP_002944687.1 CDS Vapar_2800 NC_012791.1 2944007 2944366 D KEGG: mpt:Mpe_A1315 transmembrane protein; hypothetical protein 2944007..2944366 Variovorax paradoxus S110 7971013 YP_002944688.1 CDS Vapar_2801 NC_012791.1 2944386 2944769 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bph:Bphy_5239 PAS/PAC sensor hybrid histidine kinase; response regulator receiver protein complement(2944386..2944769) Variovorax paradoxus S110 7971014 YP_002944689.1 CDS Vapar_2802 NC_012791.1 2944823 2946043 R PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: pfl:PFL_3248 response regulator/sensor histidine kinase; response regulator receiver sensor signal transduction histidine kinase complement(2944823..2946043) Variovorax paradoxus S110 7971015 YP_002944690.1 CDS Vapar_2803 NC_012791.1 2946033 2946638 R PFAM: CheB methylesterase; KEGG: pna:Pnap_1071 CheB methylesterase; CheB methylesterase complement(2946033..2946638) Variovorax paradoxus S110 7971016 YP_002944691.1 CDS Vapar_2804 NC_012791.1 2946635 2947489 R KEGG: pmy:Pmen_0170 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; MCP methyltransferase, CheR-type complement(2946635..2947489) Variovorax paradoxus S110 7971017 YP_002944692.1 CDS Vapar_2806 NC_012791.1 2951130 2953487 D PFAM: DEAD_2 domain protein; SMART: helicase c2; Helicase-like, DEXD box c2 type; KEGG: bac:BamMC406_4268 helicase C2; DEAD_2 domain-containing protein 2951130..2953487 Variovorax paradoxus S110 7971019 YP_002944693.1 CDS Vapar_2807 NC_012791.1 2953456 2954064 D PFAM: 2OG-Fe(II) oxygenase; KEGG: pzu:PHZ_c3220 DNA alkylation damage repair protein AlkB; 2OG-Fe(II) oxygenase 2953456..2954064 Variovorax paradoxus S110 7971020 YP_002944694.1 CDS Vapar_2808 NC_012791.1 2954028 2954741 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: nmu:Nmul_A1286 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein complement(2954028..2954741) Variovorax paradoxus S110 7971021 YP_002944695.1 CDS Vapar_2809 NC_012791.1 2954784 2954981 R KEGG: aav:Aave_0015 hypothetical protein; hypothetical protein complement(2954784..2954981) Variovorax paradoxus S110 7971022 YP_002944696.1 CDS Vapar_2810 NC_012791.1 2955409 2956806 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase 2955409..2956806 Variovorax paradoxus S110 7971023 YP_002944697.1 CDS Vapar_2811 NC_012791.1 2956790 2958022 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 2956790..2958022 Variovorax paradoxus S110 7971024 YP_002944698.1 CDS Vapar_2812 NC_012791.1 2958019 2958819 D KEGG: bpt:Bpet0009 hypothetical protein; TIGRFAM: dethiobiotin synthase; PFAM: cobyrinic acid ac-diamide synthase; dethiobiotin synthase 2958019..2958819 Variovorax paradoxus S110 7971025 YP_002944699.1 CDS Vapar_2813 NC_012791.1 2958802 2959851 R PFAM: aldo/keto reductase; KEGG: bpy:Bphyt_5452 aldo/keto reductase; aldo/keto reductase complement(2958802..2959851) Variovorax paradoxus S110 7971026 YP_002944700.1 CDS Vapar_2814 NC_012791.1 2960090 2961082 D PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB2415 AraC family transcriptional regulator; AraC family transcriptional regulator 2960090..2961082 Variovorax paradoxus S110 7971027 YP_002944701.1 CDS Vapar_2815 NC_012791.1 2961103 2961546 R PFAM: UspA domain protein; KEGG: dia:Dtpsy_0997 UspA domain protein; UspA domain-containing protein complement(2961103..2961546) Variovorax paradoxus S110 7971028 YP_002944702.1 CDS Vapar_2816 NC_012791.1 2961652 2963985 D TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; haloacid dehalogenase; KEGG: aav:Aave_1521 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2961652..2963985 Variovorax paradoxus S110 7971029 YP_002944703.1 CDS Vapar_2817 NC_012791.1 2963985 2964122 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: aav:Aave_1522 cytochrome oxidase maturation protein, cbb3-type; cytochrome oxidase maturation protein, cbb3-type 2963985..2964122 Variovorax paradoxus S110 7971030 YP_002944704.1 CDS Vapar_2818 NC_012791.1 2964188 2965627 D CcoN; FixN; cbb3-type cytochrome C oxidase subunit I 2964188..2965627 Variovorax paradoxus S110 7971031 YP_002944705.1 CDS Vapar_2819 NC_012791.1 2965637 2966266 D CcoO; FixO; cbb3-type cytochrome C oxidase subunit II 2965637..2966266 Variovorax paradoxus S110 7971032 YP_002944706.1 CDS Vapar_2820 NC_012791.1 2966280 2966420 D PFAM: Cbb3-type cytochrome oxidase component; KEGG: rfr:Rfer_1932 Cbb3-type cytochrome oxidase component; Cbb3-type cytochrome oxidase component 2966280..2966420 Variovorax paradoxus S110 7971033 YP_002944707.1 CDS Vapar_2821 NC_012791.1 2966440 2967351 D TIGRFAM: cytochrome C oxidase cbb3-type, subunit III; PFAM: cytochrome C class I; KEGG: dac:Daci_2778 cytochrome C oxidase cbb3-type, subunit III; cytochrome C oxidase cbb3-type subunit III 2966440..2967351 Variovorax paradoxus S110 7971034 YP_002944708.1 CDS Vapar_2822 NC_012791.1 2967370 2968830 D TIGRFAM: cytochrome C oxidase accessory protein CcoG; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding; cytochrome C oxidase accessory protein CcoG 2967370..2968830 Variovorax paradoxus S110 7971035 YP_002944709.1 CDS Vapar_2823 NC_012791.1 2968843 2969139 D KEGG: pol:Bpro_4300 hypothetical protein; hypothetical protein 2968843..2969139 Variovorax paradoxus S110 7971036 YP_002944710.1 CDS Vapar_2824 NC_012791.1 2969136 2970548 D KEGG: aav:Aave_1531 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 2969136..2970548 Variovorax paradoxus S110 7971037 YP_002944711.1 CDS Vapar_2825 NC_012791.1 2970551 2971243 D KEGG: pol:Bpro_1209 hypothetical protein; hypothetical protein 2970551..2971243 Variovorax paradoxus S110 7971038 YP_002944712.1 CDS Vapar_2826 NC_012791.1 2971257 2973608 R PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: sus:Acid_4925 phosphoketolase; phosphoketolase complement(2971257..2973608) Variovorax paradoxus S110 7971039 YP_002944713.1 CDS Vapar_2827 NC_012791.1 2973601 2973831 R PFAM: transport-associated; KEGG: reh:H16_A2017 lipoprotein; transport-associated complement(2973601..2973831) Variovorax paradoxus S110 7971040 YP_002944714.1 CDS Vapar_2828 NC_012791.1 2974079 2974300 D hypothetical protein 2974079..2974300 Variovorax paradoxus S110 7971041 YP_002944715.1 CDS Vapar_2829 NC_012791.1 2974318 2974827 R PFAM: UspA domain protein; KEGG: rfr:Rfer_0916 hypothetical protein; UspA domain-containing protein complement(2974318..2974827) Variovorax paradoxus S110 7971042 YP_002944716.1 CDS Vapar_2830 NC_012791.1 2975017 2975601 D PFAM: hemerythrin HHE cation binding domain protein; KEGG: lch:Lcho_0219 hemerythrin HHE cation binding domain-containing protein; hemerythrin HHE cation binding domain-containing protein 2975017..2975601 Variovorax paradoxus S110 7971043 YP_002944717.1 CDS Vapar_2831 NC_012791.1 2975598 2976467 R KEGG: har:HEAR2350 signal peptide; signal peptide complement(2975598..2976467) Variovorax paradoxus S110 7971044 YP_002944718.1 CDS Vapar_2832 NC_012791.1 2976558 2977955 R KEGG: dia:Dtpsy_3361 hypothetical protein; hypothetical protein complement(2976558..2977955) Variovorax paradoxus S110 7971045 YP_002944719.1 CDS Vapar_2833 NC_012791.1 2977952 2978794 R KEGG: dia:Dtpsy_3360 hypothetical protein; hypothetical protein complement(2977952..2978794) Variovorax paradoxus S110 7970722 YP_002944720.1 CDS Vapar_2834 NC_012791.1 2978914 2979429 R KEGG: pol:Bpro_2877 methylation; methylation protein complement(2978914..2979429) Variovorax paradoxus S110 7970723 YP_002944721.1 CDS Vapar_2835 NC_012791.1 2979443 2982568 R KEGG: pol:Bpro_2878 type 4 fimbrial biogenesis PilY1-related protein signal peptide; type 4 fimbrial biogenesis PilY1-like protein signal peptide complement(2979443..2982568) Variovorax paradoxus S110 7970724 YP_002944722.1 CDS Vapar_2836 NC_012791.1 2982615 2983154 R KEGG: pol:Bpro_2879 transmembrane protein; transmembrane protein complement(2982615..2983154) Variovorax paradoxus S110 7970725 YP_002944723.1 CDS Vapar_2837 NC_012791.1 2983178 2984350 R KEGG: pol:Bpro_2880 type 4 fimbrial biogenesis PilW-related protein transmembrane; type 4 fimbrial biogenesis PilW-like protein transmembrane complement(2983178..2984350) Variovorax paradoxus S110 7970726 YP_002944724.1 CDS Vapar_2838 NC_012791.1 2984347 2984946 R TIGRFAM: type IV pilus modification protein PilV; KEGG: pol:Bpro_2881 type 4 fimbrial biogenesis related transmembrane protein; type IV pilus modification protein PilV complement(2984347..2984946) Variovorax paradoxus S110 7970727 YP_002944725.1 CDS Vapar_2839 NC_012791.1 2984940 2985350 R KEGG: pol:Bpro_2882 methylation; methylation protein complement(2984940..2985350) Variovorax paradoxus S110 7970728 YP_002944726.1 CDS Vapar_2840 NC_012791.1 2985654 2985914 D hypothetical protein 2985654..2985914 Variovorax paradoxus S110 7970729 YP_002944727.1 CDS Vapar_2841 NC_012791.1 2985942 2986184 D KEGG: aav:Aave_3721 hypothetical protein; hypothetical protein 2985942..2986184 Variovorax paradoxus S110 7970730 YP_002944728.1 CDS Vapar_2842 NC_012791.1 2986319 2986627 D KEGG: proteophosphoglycan ppg4; proteophosphoglycan ppg4 2986319..2986627 Variovorax paradoxus S110 7970731 YP_002944729.1 CDS Vapar_2843 NC_012791.1 2986666 2987307 D KEGG: pol:Bpro_1359 hypothetical protein; hypothetical protein 2986666..2987307 Variovorax paradoxus S110 7970732 YP_002944730.1 CDS Vapar_2844 NC_012791.1 2987560 2991633 D TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Pertactin; KEGG: rme:Rmet_0614 outer membrane autotransporter barrel; outer membrane autotransporter barrel domain-containing protein 2987560..2991633 Variovorax paradoxus S110 7970733 YP_002944731.1 CDS Vapar_2845 NC_012791.1 2991658 2993391 R PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; protein phosphatase 2C-like; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; tyrosine protein kinase; KEGG: bja:bll2800 bifunctional serine/threonine kinase and phosphatase; serine/threonine protein kinase complement(2991658..2993391) Variovorax paradoxus S110 7970734 YP_002944732.1 CDS Vapar_2846 NC_012791.1 2993416 2994228 R PFAM: formate/nitrite transporter; KEGG: mno:Mnod_7925 formate/nitrite transporter; formate/nitrite transporter complement(2993416..2994228) Variovorax paradoxus S110 7970735 YP_002944733.1 CDS Vapar_2847 NC_012791.1 2994291 2995115 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: aav:Aave_2103 uroporphyrinogen-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(2994291..2995115) Variovorax paradoxus S110 7970736 YP_002944734.1 CDS Vapar_2848 NC_012791.1 2995130 2995561 R TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3278 assimilatory nitrite reductase (NAD(P)H) small subunit; nitrite reductase (NAD(P)H), small subunit complement(2995130..2995561) Variovorax paradoxus S110 7970737 YP_002944735.1 CDS Vapar_2849 NC_012791.1 2995581 2998043 R TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: pol:Bpro_3276 assimilatory nitrite reductase (NAD(P)H) large subunit precursor; nitrite reductase (NAD(P)H), large subunit complement(2995581..2998043) Variovorax paradoxus S110 7970738 YP_002944736.1 CDS Vapar_2850 NC_012791.1 2998413 2998619 D PFAM: protein of unknown function DUF1458; KEGG: pna:Pnap_0234 hypothetical protein; hypothetical protein 2998413..2998619 Variovorax paradoxus S110 7970739 YP_002944737.1 CDS Vapar_2851 NC_012791.1 2998673 2999095 R PFAM: protein of unknown function UPF0047; KEGG: pzu:PHZ_c0766 hypothetical protein; hypothetical protein complement(2998673..2999095) Variovorax paradoxus S110 7970740 YP_002944738.1 CDS Vapar_2852 NC_012791.1 2999280 2999660 D PFAM: cupin; KEGG: mlo:mll8342 hypothetical protein; cupin 2999280..2999660 Variovorax paradoxus S110 7970741 YP_002944739.1 CDS Vapar_2853 NC_012791.1 2999854 3000339 R KEGG: har:HEAR1611 signal peptide; signal peptide complement(2999854..3000339) Variovorax paradoxus S110 7970742 YP_002944740.1 CDS Vapar_2854 NC_012791.1 3000453 3001130 R KEGG: pol:Bpro_2515 ankyrin; ankyrin complement(3000453..3001130) Variovorax paradoxus S110 7970743 YP_002944741.1 CDS Vapar_2855 NC_012791.1 3001127 3001936 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: ajs:Ajs_1720 TatD family hydrolase; hydrolase, TatD family complement(3001127..3001936) Variovorax paradoxus S110 7970744 YP_002944742.1 CDS Vapar_2856 NC_012791.1 3002056 3002436 R PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(3002056..3002436) Variovorax paradoxus S110 7970745 YP_002944743.1 CDS Vapar_2857 NC_012791.1 3002433 3003455 R KEGG: aav:Aave_3411 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(3002433..3003455) Variovorax paradoxus S110 7970746 YP_002944744.1 CDS Vapar_2858 NC_012791.1 3003452 3004114 R KEGG: dac:Daci_3388 dTMP kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase complement(3003452..3004114) Variovorax paradoxus S110 7970747 YP_002944745.1 CDS Vapar_2859 NC_012791.1 3004111 3005133 R PFAM: aminodeoxychorismate lyase; KEGG: rfr:Rfer_2254 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(3004111..3005133) Variovorax paradoxus S110 7970748 YP_002944746.1 CDS Vapar_2860 NC_012791.1 3005256 3006182 D TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: rfr:Rfer_2253 glycine cleavage T protein (aminomethyl transferase); folate-binding protein YgfZ 3005256..3006182 Variovorax paradoxus S110 7970749 YP_002944747.1 CDS Vapar_2861 NC_012791.1 3006320 3007267 D KEGG: sml:Smlt0344 hypothetical protein; hypothetical protein 3006320..3007267 Variovorax paradoxus S110 7970750 YP_002944748.1 CDS Vapar_2862 NC_012791.1 3007287 3008165 R PFAM: thioesterase superfamily protein; GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2524 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein complement(3007287..3008165) Variovorax paradoxus S110 7970751 YP_002944749.1 CDS Vapar_2863 NC_012791.1 3008162 3009139 R PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: pna:Pnap_1944 alpha/beta hydrolase domain-containing protein; alpha/beta hydrolase fold-3 domain-containing protein complement(3008162..3009139) Variovorax paradoxus S110 7970752 YP_002944750.1 CDS Vapar_2864 NC_012791.1 3009209 3010345 D PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2526 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 3009209..3010345 Variovorax paradoxus S110 7970753 YP_002944751.1 CDS Vapar_2865 NC_012791.1 3010729 3013071 D TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: bbr:BB0793 hypothetical protein; type VI secretion system Vgr family protein 3010729..3013071 Variovorax paradoxus S110 7970754 YP_002944752.1 CDS Vapar_2866 NC_012791.1 3013075 3013518 D KEGG: bbr:BB0794 hypothetical protein; hypothetical protein 3013075..3013518 Variovorax paradoxus S110 7970755 YP_002944753.1 CDS Vapar_2867 NC_012791.1 3013526 3016171 D PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein; pentapeptide repeat-containing protein 3013526..3016171 Variovorax paradoxus S110 7970756 YP_002944754.1 CDS Vapar_2868 NC_012791.1 3016168 3017280 D PFAM: pentapeptide repeat protein; KEGG: bbr:BB0796 hypothetical protein; pentapeptide repeat-containing protein 3016168..3017280 Variovorax paradoxus S110 7970757 YP_002944755.1 CDS Vapar_2869 NC_012791.1 3017277 3018011 D KEGG: bpt:Bpet4111 hypothetical protein; hypothetical protein 3017277..3018011 Variovorax paradoxus S110 7970758 YP_002944756.1 CDS Vapar_2870 NC_012791.1 3018027 3018413 D KEGG: spe:Spro_4188 hypothetical protein; hypothetical protein 3018027..3018413 Variovorax paradoxus S110 7970759 YP_002944757.1 CDS Vapar_2871 NC_012791.1 3018419 3019336 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2668 uncharacterized protein UPF0065; hypothetical protein complement(3018419..3019336) Variovorax paradoxus S110 7970760 YP_002944758.1 CDS Vapar_2872 NC_012791.1 3019494 3020570 R KEGG: dia:Dtpsy_1995 hypothetical protein; hypothetical protein complement(3019494..3020570) Variovorax paradoxus S110 7970761 YP_002944759.1 CDS Vapar_2873 NC_012791.1 3020575 3020982 R PFAM: PilT protein domain protein; KEGG: dar:Daro_2534 PilT protein, N-terminal; PilT protein domain-containing protein complement(3020575..3020982) Variovorax paradoxus S110 7970762 YP_002944760.1 CDS Vapar_2874 NC_012791.1 3020991 3021248 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: neu:NE2111 hypothetical protein; prevent-host-death family protein complement(3020991..3021248) Variovorax paradoxus S110 7970763 YP_002944761.1 CDS Vapar_2875 NC_012791.1 3021316 3023691 R PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: ajs:Ajs_1707 RNA-binding S1 domain-containing protein; RNA binding S1 domain-containing protein complement(3021316..3023691) Variovorax paradoxus S110 7970764 YP_002944762.1 CDS Vapar_2876 NC_012791.1 3023878 3024615 D PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: vei:Veis_3567 GntR domain-containing protein; GntR family transcriptional regulator 3023878..3024615 Variovorax paradoxus S110 7970765 YP_002944763.1 CDS Vapar_2877 NC_012791.1 3024683 3025513 D PFAM: extracellular solute-binding protein family 3; KEGG: vei:Veis_3566 extracellular solute-binding protein; family 3 extracellular solute-binding protein 3024683..3025513 Variovorax paradoxus S110 7970766 YP_002944764.1 CDS Vapar_2878 NC_012791.1 3025558 3026412 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: vei:Veis_3566 extracellular solute-binding protein; family 3 extracellular solute-binding protein 3025558..3026412 Variovorax paradoxus S110 7970767 YP_002944765.1 CDS Vapar_2879 NC_012791.1 3026417 3027454 D PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: vei:Veis_3565 alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 3026417..3027454 Variovorax paradoxus S110 7970768 YP_002944766.1 CDS Vapar_2880 NC_012791.1 3027504 3028169 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3564 fis family transcriptional regulator; polar amino acid ABC transporter inner membrane subunit 3027504..3028169 Variovorax paradoxus S110 7970769 YP_002944767.1 CDS Vapar_2881 NC_012791.1 3028186 3028845 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3563 polar amino acid ABC transporter inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 3028186..3028845 Variovorax paradoxus S110 7970770 YP_002944768.1 CDS Vapar_2882 NC_012791.1 3028842 3029627 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_3562 ABC transporter; ABC transporter 3028842..3029627 Variovorax paradoxus S110 7970771 YP_002944769.1 CDS Vapar_2883 NC_012791.1 3029676 3030887 D PFAM: mandelate racemase/muconate lactonizing protein; KEGG: vei:Veis_3561 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein 3029676..3030887 Variovorax paradoxus S110 7970772 YP_002944770.1 CDS Vapar_2884 NC_012791.1 3030893 3032410 D PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vei:Veis_3560 mannitol dehydrogenase domain-containing protein; Mannitol dehydrogenase domain-containing protein 3030893..3032410 Variovorax paradoxus S110 7970773 YP_002944771.1 CDS Vapar_2885 NC_012791.1 3032449 3032943 D KEGG: rfr:Rfer_0625 hypothetical protein; hypothetical protein 3032449..3032943 Variovorax paradoxus S110 7970774 YP_002944772.1 CDS Vapar_2886 NC_012791.1 3033003 3033365 D KEGG: dal:Dalk_1996 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 3033003..3033365 Variovorax paradoxus S110 7970775 YP_002944773.1 CDS Vapar_2887 NC_012791.1 3033362 3033841 D KEGG: rfr:Rfer_0178 MarR family transcriptional regulator; AsnC family transcriptional regulator 3033362..3033841 Variovorax paradoxus S110 7970776 YP_002944774.1 CDS Vapar_2888 NC_012791.1 3033811 3034386 D KEGG: azc:AZC_0517 hypothetical protein; hypothetical protein 3033811..3034386 Variovorax paradoxus S110 7970777 YP_002944775.1 CDS Vapar_2889 NC_012791.1 3034383 3035798 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rso:RS03157 hypothetical protein; MATE efflux family protein 3034383..3035798 Variovorax paradoxus S110 7970778 YP_002944776.1 CDS Vapar_2890 NC_012791.1 3035821 3036297 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bph:Bphy_4083 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase complement(3035821..3036297) Variovorax paradoxus S110 7970779 YP_002944777.1 CDS Vapar_2891 NC_012791.1 3036362 3037981 R TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sus:Acid_0667 EmrB/QacA family drug resistance transporter; EmrB/QacA subfamily drug resistance transporter complement(3036362..3037981) Variovorax paradoxus S110 7970780 YP_002944778.1 CDS Vapar_2892 NC_012791.1 3038141 3038773 R PFAM: protein of unknown function DUF330; KEGG: mms:mma_1055 hypothetical protein; hypothetical protein complement(3038141..3038773) Variovorax paradoxus S110 7970781 YP_002944779.1 CDS Vapar_2893 NC_012791.1 3038770 3040416 R PFAM: hypothetical protein; KEGG: mms:mma_1054 paraquat-inducible protein B; hypothetical protein complement(3038770..3040416) Variovorax paradoxus S110 7970782 YP_002944780.1 CDS Vapar_2894 NC_012791.1 3040413 3041129 R PFAM: paraquat-inducible protein A; KEGG: mms:mma_1053 paraquat-inducible protein A; paraquat-inducible protein A complement(3040413..3041129) Variovorax paradoxus S110 7970783 YP_002944781.1 CDS Vapar_2895 NC_012791.1 3041126 3041767 R PFAM: paraquat-inducible protein A; KEGG: mms:mma_1052 hypothetical protein; paraquat-inducible protein A complement(3041126..3041767) Variovorax paradoxus S110 7970784 YP_002944782.1 CDS Vapar_2896 NC_012791.1 3041788 3043218 R PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_3366 major facilitator transporter; major facilitator superfamily protein complement(3041788..3043218) Variovorax paradoxus S110 7970785 YP_002944783.1 CDS Vapar_2897 NC_012791.1 3043233 3044423 R TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_3365 Bcr/CflA subfamily drug resistance transporter; Bcr/CflA subfamily drug resistance transporter complement(3043233..3044423) Variovorax paradoxus S110 7970786 YP_002944784.1 CDS Vapar_2898 NC_012791.1 3044664 3046529 D PFAM: peptidase M48 Ste24p; KEGG: aav:Aave_1993 peptidase M48, Ste24p; peptidase M48 Ste24p 3044664..3046529 Variovorax paradoxus S110 7970787 YP_002944785.1 CDS Vapar_2899 NC_012791.1 3046549 3047163 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bpa:BPP0245 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(3046549..3047163) Variovorax paradoxus S110 7970788 YP_002944786.1 CDS Vapar_2900 NC_012791.1 3047160 3048332 R PFAM: major facilitator superfamily MFS_1; KEGG: ppg:PputGB1_3110 major facilitator transporter; major facilitator superfamily protein complement(3047160..3048332) Variovorax paradoxus S110 7970789 YP_002944787.1 CDS Vapar_2901 NC_012791.1 3048411 3049325 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pfl:PFL_5000 LysR family transcriptional regulator; LysR family transcriptional regulator 3048411..3049325 Variovorax paradoxus S110 7970790 YP_002944788.1 CDS Vapar_2902 NC_012791.1 3049393 3050613 D PFAM: major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_3134 major facilitator superfamily MFS_1; major facilitator superfamily protein 3049393..3050613 Variovorax paradoxus S110 7970791 YP_002944789.1 CDS Vapar_2903 NC_012791.1 3050628 3051203 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pol:Bpro_2560 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA/protein-cysteine methyltransferase complement(3050628..3051203) Variovorax paradoxus S110 7970792 YP_002944790.1 CDS Vapar_2904 NC_012791.1 3051225 3054302 R PFAM: FAD linked oxidase; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dac:Daci_3054 D-lactate dehydrogenase (cytochrome); D-lactate dehydrogenase (cytochrome) complement(3051225..3054302) Variovorax paradoxus S110 7970793 YP_002944791.1 CDS Vapar_2905 NC_012791.1 3054319 3055014 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dac:Daci_3053 GntR family transcriptional regulator; GntR family transcriptional regulator complement(3054319..3055014) Variovorax paradoxus S110 7970794 YP_002944792.1 CDS Vapar_2906 NC_012791.1 3055136 3056380 D PFAM: aminotransferase class V; KEGG: dac:Daci_3052 serine--glyoxylate transaminase; class V aminotransferase 3055136..3056380 Variovorax paradoxus S110 7970795 YP_002944793.1 CDS Vapar_2907 NC_012791.1 3056438 3057421 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_0560 twin-arginine translocation pathway signal; hypothetical protein 3056438..3057421 Variovorax paradoxus S110 7970796 YP_002944794.1 CDS Vapar_2908 NC_012791.1 3057745 3058503 D KEGG: pol:Bpro_0561 2-keto-4-pentenoate hydratase-like; 2-keto-4-pentenoate hydratase-like protein 3057745..3058503 Variovorax paradoxus S110 7970797 YP_002944795.1 CDS Vapar_2909 NC_012791.1 3058452 3059414 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_4251 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3058452..3059414) Variovorax paradoxus S110 7970798 YP_002944796.1 CDS Vapar_2910 NC_012791.1 3059509 3060702 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4250 major facilitator superfamily MFS_1; major facilitator superfamily protein 3059509..3060702 Variovorax paradoxus S110 7970799 YP_002944797.1 CDS Vapar_2911 NC_012791.1 3060742 3061773 D PFAM: aldo/keto reductase; KEGG: pol:Bpro_4249 aldo/keto reductase; aldo/keto reductase 3060742..3061773 Variovorax paradoxus S110 7970800 YP_002944798.1 CDS Vapar_2912 NC_012791.1 3061740 3062459 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sal:Sala_0365 (acyl-carrier protein) phosphodiesterase; NAD(P)H dehydrogenase (quinone) complement(3061740..3062459) Variovorax paradoxus S110 7970801 YP_002944799.1 CDS Vapar_2913 NC_012791.1 3062560 3063480 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mch:Mchl_1999 LysR family transcriptional regulator; LysR family transcriptional regulator 3062560..3063480 Variovorax paradoxus S110 7970802 YP_002944800.1 CDS Vapar_2914 NC_012791.1 3063800 3064705 R probable dehydrogenase; hypothetical protein complement(3063800..3064705) Variovorax paradoxus S110 7972190 YP_002944801.1 CDS Vapar_2915 NC_012791.1 3064824 3065762 R KEGG: rfr:Rfer_2490 glutathione S-transferase-related protein; glutathione S-transferase-like protein complement(3064824..3065762) Variovorax paradoxus S110 7972191 YP_002944802.1 CDS Vapar_2916 NC_012791.1 3065795 3067435 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pna:Pnap_1847 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein complement(3065795..3067435) Variovorax paradoxus S110 7972192 YP_002944803.1 CDS Vapar_2917 NC_012791.1 3067468 3068484 R PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: dia:Dtpsy_2006 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase zinc-binding domain-containing protein complement(3067468..3068484) Variovorax paradoxus S110 7972193 YP_002944804.1 CDS Vapar_2918 NC_012791.1 3068507 3068971 R PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2566 phenylacetic acid degradation-related protein; thioesterase superfamily protein complement(3068507..3068971) Variovorax paradoxus S110 7972194 YP_002944805.1 CDS Vapar_2919 NC_012791.1 3069329 3070123 R Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase complement(3069329..3070123) Variovorax paradoxus S110 7972195 YP_002944806.1 CDS Vapar_2920 NC_012791.1 3070155 3070457 R PFAM: stress responsive alpha-beta barrel domain protein; KEGG: bte:BTH_I2146 hypothetical protein; stress responsive alpha-beta barrel domain-containing protein complement(3070155..3070457) Variovorax paradoxus S110 7972196 YP_002944807.1 CDS Vapar_2921 NC_012791.1 3070480 3070716 R KEGG: pol:Bpro_2569 hypothetical protein; hypothetical protein complement(3070480..3070716) Variovorax paradoxus S110 7972197 YP_002944808.1 CDS Vapar_2922 NC_012791.1 3070719 3072572 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_2570 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(3070719..3072572) Variovorax paradoxus S110 7972198 YP_002944809.1 CDS Vapar_2923 NC_012791.1 3072709 3073884 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3072709..3073884) Variovorax paradoxus S110 7972199 YP_002944810.1 CDS Vapar_2924 NC_012791.1 3073928 3075403 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rpi:Rpic_4704 peptidase M20; hypothetical protein complement(3073928..3075403) Variovorax paradoxus S110 7972200 YP_002944811.1 CDS Vapar_2925 NC_012791.1 3075426 3077531 R PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: aav:Aave_2880 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase; NAD-binding 3-hydroxyacyl-CoA dehydrogenase complement(3075426..3077531) Variovorax paradoxus S110 7972201 YP_002944812.1 CDS Vapar_2926 NC_012791.1 3077684 3078379 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_2574 ABC transporter; ABC transporter complement(3077684..3078379) Variovorax paradoxus S110 7972202 YP_002944813.1 CDS Vapar_2927 NC_012791.1 3078633 3079409 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_2575 ABC transporter; ABC transporter complement(3078633..3079409) Variovorax paradoxus S110 7972203 YP_002944814.1 CDS Vapar_2928 NC_012791.1 3079409 3080737 R PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2023 inner-membrane translocator; inner-membrane translocator complement(3079409..3080737) Variovorax paradoxus S110 7972204 YP_002944815.1 CDS Vapar_2929 NC_012791.1 3080742 3081695 R PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2024 inner-membrane translocator; inner-membrane translocator complement(3080742..3081695) Variovorax paradoxus S110 7972205 YP_002944816.1 CDS Vapar_2930 NC_012791.1 3081777 3083015 R PFAM: extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2025 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(3081777..3083015) Variovorax paradoxus S110 7972206 YP_002944817.1 CDS Vapar_2931 NC_012791.1 3083216 3084445 R KEGG: dac:Daci_3308 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(3083216..3084445) Variovorax paradoxus S110 7972207 YP_002944818.1 CDS Vapar_2932 NC_012791.1 3084586 3086229 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(3084586..3086229) Variovorax paradoxus S110 7972208 YP_002944819.1 CDS Vapar_2933 NC_012791.1 3086360 3088162 R PFAM: carboxylesterase type B; KEGG: dac:Daci_3304 carboxylesterase type B; carboxylesterase type B complement(3086360..3088162) Variovorax paradoxus S110 7972209 YP_002944820.1 CDS Vapar_2934 NC_012791.1 3088363 3089439 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dac:Daci_3303 AraC family transcriptional regulator; AraC family transcriptional regulator 3088363..3089439 Variovorax paradoxus S110 7972210 YP_002944821.1 CDS Vapar_2935 NC_012791.1 3089505 3090989 D PFAM: protein of unknown function UPF0061; KEGG: rfr:Rfer_2395 hypothetical protein; hypothetical protein 3089505..3090989 Variovorax paradoxus S110 7972211 YP_002944822.1 CDS Vapar_2936 NC_012791.1 3090986 3091396 D KEGG: aav:Aave_2948 methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 3090986..3091396 Variovorax paradoxus S110 7972212 YP_002944823.1 CDS Vapar_2937 NC_012791.1 3091425 3091964 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 3091425..3091964 Variovorax paradoxus S110 7972213 YP_002944824.1 CDS Vapar_2938 NC_012791.1 3091961 3092242 D PFAM: BolA family protein; KEGG: dac:Daci_3299 BolA family protein; BolA family protein 3091961..3092242 Variovorax paradoxus S110 7972214 YP_002944825.1 CDS Vapar_2939 NC_012791.1 3092376 3093161 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rfr:Rfer_2399 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3092376..3093161 Variovorax paradoxus S110 7972215 YP_002944826.1 CDS Vapar_2940 NC_012791.1 3093231 3097265 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(3093231..3097265) Variovorax paradoxus S110 7972216 YP_002944827.1 CDS Vapar_2941 NC_012791.1 3097461 3098285 D KEGG: aav:Aave_3100 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase, type I 3097461..3098285 Variovorax paradoxus S110 7972217 YP_002944828.1 CDS Vapar_2942 NC_012791.1 3098320 3100926 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3098320..3100926 Variovorax paradoxus S110 7972218 YP_002944829.1 CDS Vapar_2943 NC_012791.1 3101015 3102667 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 3101015..3102667 Variovorax paradoxus S110 7972219 YP_002944830.1 CDS Vapar_2944 NC_012791.1 3102683 3103741 R TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2326 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane subunit complement(3102683..3103741) Variovorax paradoxus S110 7972220 YP_002944831.1 CDS Vapar_2945 NC_012791.1 3103738 3104736 R TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lch:Lcho_2137 polar amino acid ABC transporter inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(3103738..3104736) Variovorax paradoxus S110 7972221 YP_002944832.1 CDS Vapar_2946 NC_012791.1 3104733 3105767 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: azo:azo1331 amino acid-binding protein; family 3 extracellular solute-binding protein complement(3104733..3105767) Variovorax paradoxus S110 7972222 YP_002944833.1 CDS Vapar_2947 NC_012791.1 3105937 3106332 D PFAM: DoxX family protein; KEGG: bpt:Bpet2480 hypothetical protein; DoxX family protein 3105937..3106332 Variovorax paradoxus S110 7972223 YP_002944834.1 CDS Vapar_2948 NC_012791.1 3106383 3106922 R KEGG: pol:Bpro_2590 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(3106383..3106922) Variovorax paradoxus S110 7972224 YP_002944835.1 CDS Vapar_2949 NC_012791.1 3106956 3107396 R KEGG: oan:Oant_2490 conserved hypothetical membrane spanning protein; hypothetical protein complement(3106956..3107396) Variovorax paradoxus S110 7972225 YP_002944836.1 CDS Vapar_2950 NC_012791.1 3107504 3109588 R KEGG: pol:Bpro_2592 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; DNA-binding protein; DNA ligase, NAD-dependent complement(3107504..3109588) Variovorax paradoxus S110 7972226 YP_002944837.1 CDS Vapar_2951 NC_012791.1 3109611 3110714 R SMART: ZipA FtsZ-binding region; KEGG: rfr:Rfer_2200 hypothetical protein; ZipA FtsZ-binding protein complement(3109611..3110714) Variovorax paradoxus S110 7972227 YP_002944838.1 CDS Vapar_2952 NC_012791.1 3110727 3114242 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: rfr:Rfer_2199 chromosome segregation protein SMC; chromosome segregation protein SMC complement(3110727..3114242) Variovorax paradoxus S110 7972228 YP_002944839.1 CDS Vapar_2953 NC_012791.1 3114356 3115117 D KEGG: pol:Bpro_4259 lipoprotein; lipoprotein 3114356..3115117 Variovorax paradoxus S110 7972229 YP_002944840.1 CDS Vapar_2954 NC_012791.1 3115178 3115507 D KEGG: bpt:Bpet2254 transcriptional regulator; addiction module antidote protein 3115178..3115507 Variovorax paradoxus S110 7972230 YP_002944841.1 CDS Vapar_2955 NC_012791.1 3115504 3116802 D TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bpt:Bpet2255 hypothetical protein; HipA N-terminal domain-containing protein 3115504..3116802 Variovorax paradoxus S110 7972231 YP_002944842.1 CDS Vapar_2956 NC_012791.1 3116868 3117560 D KEGG: mpt:Mpe_A0426 mobilization protein MobD; mobilization protein MobD 3116868..3117560 Variovorax paradoxus S110 7972232 YP_002944843.1 CDS Vapar_2957 NC_012791.1 3117561 3118076 R PFAM: Disulphide bond formation protein DsbB; KEGG: dac:Daci_4586 disulphide bond formation protein DsbB; Disulfide bond formation protein DsbB complement(3117561..3118076) Variovorax paradoxus S110 7972233 YP_002944844.1 CDS Vapar_2958 NC_012791.1 3118061 3119158 R KEGG: pol:Bpro_2379 sulfate transport system permease protein 1; TIGRFAM: sulfate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA; sulfate ABC transporter ATPase complement(3118061..3119158) Variovorax paradoxus S110 7972234 YP_002944845.1 CDS Vapar_2959 NC_012791.1 3119249 3120142 R TIGRFAM: sulfate ABC transporter inner membrane subunit CysW; sulfate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_2547 sulfate ABC transporter inner membrane subunit CysW; sulfate ABC transporter inner membrane subunit CysW complement(3119249..3120142) Variovorax paradoxus S110 7972235 YP_002944846.1 CDS Vapar_2960 NC_012791.1 3120144 3121031 R TIGRFAM: sulfate ABC transporter inner membrane subunit CysT; sulfate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2377 sulfate ABC transporter permease protein CysT; sulfate ABC transporter inner membrane protein complement(3120144..3121031) Variovorax paradoxus S110 7972236 YP_002944847.1 CDS Vapar_2961 NC_012791.1 3121032 3122048 R TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pol:Bpro_2376 thiosulfate-binding protein; sulfate ABC transporter periplasmic sulfate-binding protein complement(3121032..3122048) Variovorax paradoxus S110 7972237 YP_002944848.1 CDS Vapar_2962 NC_012791.1 3122045 3122620 R PFAM: protein of unknown function DUF1234; KEGG: aav:Aave_2544 hypothetical protein; hypothetical protein complement(3122045..3122620) Variovorax paradoxus S110 7972238 YP_002944849.1 CDS Vapar_2963 NC_012791.1 3122641 3123282 R PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: pol:Bpro_2374 1-Cys peroxiredoxin; Peroxidase complement(3122641..3123282) Variovorax paradoxus S110 7972239 YP_002944850.1 CDS Vapar_2964 NC_012791.1 3123395 3124309 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_2373 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3123395..3124309) Variovorax paradoxus S110 7972240 YP_002944851.1 CDS Vapar_2965 NC_012791.1 3124440 3125087 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rfr:Rfer_0809 (acyl-carrier protein) phosphodiesterase; NAD(P)H dehydrogenase (quinone) 3124440..3125087 Variovorax paradoxus S110 7972241 YP_002944852.1 CDS Vapar_2966 NC_012791.1 3125165 3125722 R PFAM: NADPH-dependent FMN reductase; KEGG: nmu:Nmul_A1574 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(3125165..3125722) Variovorax paradoxus S110 7972242 YP_002944853.1 CDS Vapar_2967 NC_012791.1 3125904 3126839 D KEGG: msl:Msil_2600 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 3125904..3126839 Variovorax paradoxus S110 7972243 YP_002944854.1 CDS Vapar_2968 NC_012791.1 3126856 3127533 D KEGG: scl:sce8944 hypothetical protein; hypothetical protein 3126856..3127533 Variovorax paradoxus S110 7972244 YP_002944855.1 CDS Vapar_2969 NC_012791.1 3127547 3128914 R PFAM: tryptophan halogenase; monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1332 oxidoreductase, FAD-binding; tryptophan halogenase complement(3127547..3128914) Variovorax paradoxus S110 7972245 YP_002944856.1 CDS Vapar_2970 NC_012791.1 3128988 3129902 R PFAM: transferase hexapeptide repeat containing protein; KEGG: pna:Pnap_0539 serine O-acetyltransferase; serine O-acetyltransferase complement(3128988..3129902) Variovorax paradoxus S110 7972246 YP_002944857.1 CDS Vapar_2971 NC_012791.1 3130042 3130257 R PFAM: TOBE domain protein; KEGG: aav:Aave_3040 TOBE domain-containing protein; TOBE domain-containing protein complement(3130042..3130257) Variovorax paradoxus S110 7972247 YP_002944858.1 CDS Vapar_2972 NC_012791.1 3130320 3131609 R KEGG: mpt:Mpe_A0028 O-acetylhomoserine aminocarboxypropyltransferase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(3130320..3131609) Variovorax paradoxus S110 7972248 YP_002944859.1 CDS Vapar_2973 NC_012791.1 3131646 3132476 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aav:Aave_3041 ABC transporter-related protein; ABC transporter complement(3131646..3132476) Variovorax paradoxus S110 7972249 YP_002944860.1 CDS Vapar_2974 NC_012791.1 3132473 3133447 R KEGG: mms:mma_2619 sulfonate/nitrate transport system substrate-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; PFAM: substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein complement(3132473..3133447) Variovorax paradoxus S110 7972250 YP_002944861.1 CDS Vapar_2975 NC_012791.1 3133459 3134313 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_2417 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(3133459..3134313) Variovorax paradoxus S110 7972251 YP_002944862.1 CDS Vapar_2976 NC_012791.1 3134326 3135495 R catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase complement(3134326..3135495) Variovorax paradoxus S110 7972252 YP_002944863.1 CDS Vapar_2977 NC_012791.1 3135518 3135667 R hypothetical protein complement(3135518..3135667) Variovorax paradoxus S110 7972253 YP_002944864.1 CDS Vapar_2978 NC_012791.1 3135667 3136626 R TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: rfr:Rfer_1779 ABC transporter substrate-binding protein, aliphatic sulphonates; aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein complement(3135667..3136626) Variovorax paradoxus S110 7972254 YP_002944865.1 CDS Vapar_2979 NC_012791.1 3136668 3136802 R hypothetical protein complement(3136668..3136802) Variovorax paradoxus S110 7972255 YP_002944866.1 CDS Vapar_2980 NC_012791.1 3136921 3137439 R PFAM: NADPH-dependent FMN reductase; KEGG: pna:Pnap_2421 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(3136921..3137439) Variovorax paradoxus S110 7972256 YP_002944867.1 CDS Vapar_2981 NC_012791.1 3137555 3138592 R TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: aav:Aave_3046 sulfate ABC transporter periplasmic sulfate-binding protein; sulfate ABC transporter periplasmic sulfate-binding protein complement(3137555..3138592) Variovorax paradoxus S110 7972257 YP_002944868.1 CDS Vapar_2982 NC_012791.1 3138730 3139002 D PFAM: Fe(II) trafficking protein YggX; KEGG: pol:Bpro_2344 hypothetical protein; hypothetical protein 3138730..3139002 Variovorax paradoxus S110 7972258 YP_002944869.1 CDS Vapar_2983 NC_012791.1 3139010 3140872 D TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: pol:Bpro_2343 protein of unknown function DUF752; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC 3139010..3140872 Variovorax paradoxus S110 7972259 YP_002944870.1 CDS Vapar_2984 NC_012791.1 3140897 3141805 D PFAM: transglutaminase; transglutaminase domain protein; SMART: transglutaminase; KEGG: pna:Pnap_1061 transglutaminase domain-containing protein; transglutaminase 3140897..3141805 Variovorax paradoxus S110 7972260 YP_002944871.1 CDS Vapar_2985 NC_012791.1 3141991 3143496 D KEGG: dac:Daci_5148 hypothetical protein; hypothetical protein 3141991..3143496 Variovorax paradoxus S110 7972261 YP_002944872.1 CDS Vapar_2986 NC_012791.1 3143585 3144073 D KEGG: azc:AZC_1720 hypothetical protein; hypothetical protein 3143585..3144073 Variovorax paradoxus S110 7972262 YP_002944873.1 CDS Vapar_2987 NC_012791.1 3144080 3145576 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: rpi:Rpic_0294 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(3144080..3145576) Variovorax paradoxus S110 7972263 YP_002944874.1 CDS Vapar_2988 NC_012791.1 3145576 3146304 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rpi:Rpic_0295 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(3145576..3146304) Variovorax paradoxus S110 7972264 YP_002944875.1 CDS Vapar_2989 NC_012791.1 3146402 3147034 D KEGG: dac:Daci_3135 thiosulfate reductase cytochrome b subunit (membrane anchoring protein); thiosulfate reductase cytochrome b subunit (membrane anchoring protein) 3146402..3147034 Variovorax paradoxus S110 7972265 YP_002944876.1 CDS Vapar_2990 NC_012791.1 3147036 3147827 D PFAM: oxidoreductase molybdopterin binding; KEGG: dac:Daci_3134 oxidoreductase molybdopterin binding; oxidoreductase molybdopterin binding 3147036..3147827 Variovorax paradoxus S110 7972266 YP_002944877.1 CDS Vapar_2991 NC_012791.1 3147930 3148181 D TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: pol:Bpro_0540 hypothetical protein; pentapeptide MXKDX repeat-containing protein 3147930..3148181 Variovorax paradoxus S110 7972267 YP_002944878.1 CDS Vapar_2992 NC_012791.1 3148274 3148975 D KEGG: msl:Msil_0646 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 3148274..3148975 Variovorax paradoxus S110 7972268 YP_002944879.1 CDS Vapar_2993 NC_012791.1 3148982 3150013 R PFAM: fructose-bisphosphate aldolase class-I; KEGG: mmw:Mmwyl1_1951 fructose-bisphosphate aldolase; Fructose-bisphosphate aldolase complement(3148982..3150013) Variovorax paradoxus S110 7972269 YP_002944880.1 CDS Vapar_2994 NC_012791.1 3150069 3151241 R PFAM: FAD dependent oxidoreductase; KEGG: rso:RS02147 hypothetical protein; FAD dependent oxidoreductase complement(3150069..3151241) Variovorax paradoxus S110 7972270 YP_002944881.1 CDS Vapar_2995 NC_012791.1 3151329 3152222 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reu:Reut_B5533 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 3151329..3152222 Variovorax paradoxus S110 7971782 YP_002944882.1 CDS Vapar_2996 NC_012791.1 3152443 3153114 D KEGG: aav:Aave_4248 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 3152443..3153114 Variovorax paradoxus S110 7973716 YP_002944883.1 CDS Vapar_2997 NC_012791.1 3153111 3153674 D hypothetical protein 3153111..3153674 Variovorax paradoxus S110 7973717 YP_002944884.1 CDS Vapar_2998 NC_012791.1 3153774 3154232 D PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_2951 acetyltransferase; GCN5-like N-acetyltransferaser 3153774..3154232 Variovorax paradoxus S110 7973718 YP_002944885.1 CDS Vapar_2999 NC_012791.1 3154255 3154707 R PFAM: transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: dia:Dtpsy_0035 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(3154255..3154707) Variovorax paradoxus S110 7973719 YP_002944886.1 CDS Vapar_3000 NC_012791.1 3154953 3155918 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: vei:Veis_4588 RpiR family transcriptional regulator; RpiR family transcriptional regulator 3154953..3155918 Variovorax paradoxus S110 7973720 YP_002944887.1 CDS Vapar_3001 NC_012791.1 3155915 3156877 D PFAM: peptidase T2 asparaginase 2; KEGG: vei:Veis_4589 peptidase T2, asparaginase 2; beta-aspartyl-peptidase 3155915..3156877 Variovorax paradoxus S110 7973721 YP_002944888.1 CDS Vapar_3002 NC_012791.1 3156903 3158780 D KEGG: vei:Veis_4590 oligopeptide/dipeptide ABC transporter ATPase; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 3156903..3158780 Variovorax paradoxus S110 7973722 YP_002944889.1 CDS Vapar_3003 NC_012791.1 3158851 3160401 D PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_4591 extracellular solute-binding protein; family 5 extracellular solute-binding protein 3158851..3160401 Variovorax paradoxus S110 7973723 YP_002944890.1 CDS Vapar_3004 NC_012791.1 3160539 3161459 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4592 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 3160539..3161459 Variovorax paradoxus S110 7973724 YP_002944891.1 CDS Vapar_3005 NC_012791.1 3161470 3162390 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4593 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 3161470..3162390 Variovorax paradoxus S110 7973725 YP_002944892.1 CDS Vapar_3006 NC_012791.1 3162403 3163455 D PFAM: peptidase S58 DmpA; KEGG: vei:Veis_4594 peptidase S58, DmpA; peptidase S58 DmpA 3162403..3163455 Variovorax paradoxus S110 7973726 YP_002944893.1 CDS Vapar_3007 NC_012791.1 3163474 3164295 D PFAM: peptidase M55 D-aminopeptidase; KEGG: vei:Veis_4595 peptidase M55, D-aminopeptidase; peptidase M55 D-aminopeptidase 3163474..3164295 Variovorax paradoxus S110 7973727 YP_002944894.1 CDS Vapar_3008 NC_012791.1 3164904 3166418 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane; hypothetical protein complement(3164904..3166418) Variovorax paradoxus S110 7973728 YP_002944895.1 CDS Vapar_3009 NC_012791.1 3166420 3166956 R KEGG: pol:Bpro_2010 hypothetical protein; hypothetical protein complement(3166420..3166956) Variovorax paradoxus S110 7973729 YP_002944896.1 CDS Vapar_3010 NC_012791.1 3167136 3168095 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2009 uncharacterized protein UPF0065; hypothetical protein complement(3167136..3168095) Variovorax paradoxus S110 7973730 YP_002944897.1 CDS Vapar_3011 NC_012791.1 3168223 3168903 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pol:Bpro_2008 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 3168223..3168903 Variovorax paradoxus S110 7973731 YP_002944898.1 CDS Vapar_3012 NC_012791.1 3168900 3170321 D PFAM: Two-component sensor kinase domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pna:Pnap_1232 integral membrane sensor signal transduction histidine kinase; histidine kinase 3168900..3170321 Variovorax paradoxus S110 7973732 YP_002944899.1 CDS Vapar_3014 NC_012791.1 3170810 3171616 D PFAM: protein of unknown function DUF344; KEGG: mpt:Mpe_A3289 polyphosphate:AMP phosphotransferase; hypothetical protein 3170810..3171616 Variovorax paradoxus S110 7973734 YP_002944900.1 CDS Vapar_3015 NC_012791.1 3171635 3172306 R KEGG: dia:Dtpsy_0101 hypothetical protein; hypothetical protein complement(3171635..3172306) Variovorax paradoxus S110 7973735 YP_002944901.1 CDS Vapar_3016 NC_012791.1 3172446 3173558 R PFAM: regulatory protein LysR; KEGG: mpt:Mpe_A3707 periplasmic-binding protein; molybdate metabolism LysR family transcriptional regulator complement(3172446..3173558) Variovorax paradoxus S110 7973736 YP_002944902.1 CDS Vapar_3017 NC_012791.1 3173682 3174146 D PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: bbr:BB1323 formate dehydrogenase subunit gamma; NADH dehydrogenase (ubiquinone) 24 kDa subunit 3173682..3174146 Variovorax paradoxus S110 7973737 YP_002944903.1 CDS Vapar_3018 NC_012791.1 3174143 3175702 D PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mpt:Mpe_A3709 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 3174143..3175702 Variovorax paradoxus S110 7973738 YP_002944904.1 CDS Vapar_3019 NC_012791.1 3175725 3178598 D TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: mpt:Mpe_A3710 NAD-dependent formate dehydrogenase subunit alpha; formate dehydrogenase subunit alpha 3175725..3178598 Variovorax paradoxus S110 7973739 YP_002944905.1 CDS Vapar_3020 NC_012791.1 3178595 3179431 D TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: bav:BAV0815 formate dehydrogenase associated protein; formate dehydrogenase family accessory protein FdhD 3178595..3179431 Variovorax paradoxus S110 7973740 YP_002944906.1 CDS Vapar_3021 NC_012791.1 3179443 3179667 D KEGG: rme:Rmet_0557 formate dehydrogenase subunit delta; formate dehydrogenase subunit delta 3179443..3179667 Variovorax paradoxus S110 7973741 YP_002944907.1 CDS Vapar_3022 NC_012791.1 3179684 3180700 R KEGG: mpt:Mpe_A2793 fructose-bisphosphate aldolase; TIGRFAM: fructose-bisphosphate aldolase, class II, Calvin cycle subtype; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase, class II, Calvin cycle subtype complement(3179684..3180700) Variovorax paradoxus S110 7973742 YP_002944908.1 CDS Vapar_3023 NC_012791.1 3180741 3181922 R PFAM: phosphoglycerate kinase; KEGG: mpt:Mpe_A2792 phosphoglycerate kinase; phosphoglycerate kinase complement(3180741..3181922) Variovorax paradoxus S110 7973743 YP_002944909.1 CDS Vapar_3024 NC_012791.1 3181919 3183958 R TIGRFAM: transketolase; PFAM: transketolase central region; transketolase; KEGG: mpt:Mpe_A2790 transketolase; transketolase complement(3181919..3183958) Variovorax paradoxus S110 7973744 YP_002944910.1 CDS Vapar_3025 NC_012791.1 3184014 3184892 R PFAM: phosphoribulokinase/uridine kinase; KEGG: mpt:Mpe_A2789 phosphoribulokinase; phosphoribulokinase complement(3184014..3184892) Variovorax paradoxus S110 7973745 YP_002944911.1 CDS Vapar_3026 NC_012791.1 3184943 3186019 R PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: mpt:Mpe_A2788 D-fructose 1,6-bisphosphatase; Inositol phosphatase/fructose-16-bisphosphatase complement(3184943..3186019) Variovorax paradoxus S110 7973746 YP_002944912.1 CDS Vapar_3027 NC_012791.1 3186038 3186769 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A2787 phosphoglycolate phosphatase; HAD superfamily hydrolase complement(3186038..3186769) Variovorax paradoxus S110 7973747 YP_002944913.1 CDS Vapar_3028 NC_012791.1 3186766 3187470 R KEGG: mpt:Mpe_A2786 ribulose-5-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(3186766..3187470) Variovorax paradoxus S110 7973748 YP_002944914.1 CDS Vapar_3029 NC_012791.1 3187471 3188274 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: mpt:Mpe_A2785 haloacid dehalogenase; HAD superfamily hydrolase complement(3187471..3188274) Variovorax paradoxus S110 7973749 YP_002944915.1 CDS Vapar_3030 NC_012791.1 3188271 3189203 R KEGG: mpt:Mpe_A2784 AAA type ATPase; TIGRFAM: CbbX protein; PFAM: ATPase AAA; SMART: ATPase AAA; CbbX protein complement(3188271..3189203) Variovorax paradoxus S110 7973750 YP_002944916.1 CDS Vapar_3031 NC_012791.1 3189240 3189659 R PFAM: ribulose bisphosphate carboxylase small chain; KEGG: mpt:Mpe_A2783 ribulose 1,5-bisphosphate carboxylase small subunit; Ribulose-bisphosphate carboxylase complement(3189240..3189659) Variovorax paradoxus S110 7973751 YP_002944917.1 CDS rbcL NC_012791.1 3189692 3191158 R type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase complement(3189692..3191158) Variovorax paradoxus S110 7973752 YP_002944918.1 CDS Vapar_3033 NC_012791.1 3191279 3192256 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mpt:Mpe_A2781 LysR family transcriptional regulator; LysR family transcriptional regulator 3191279..3192256 Variovorax paradoxus S110 7973753 YP_002944919.1 CDS Vapar_3034 NC_012791.1 3192275 3194500 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo2978 TonB-dependent receptor; TonB-dependent receptor complement(3192275..3194500) Variovorax paradoxus S110 7973754 YP_002944920.1 CDS Vapar_3035 NC_012791.1 3194583 3195599 R PFAM: conserved hypothetical protein; KEGG: lch:Lcho_1801 hypothetical protein; hypothetical protein complement(3194583..3195599) Variovorax paradoxus S110 7973755 YP_002944921.1 CDS Vapar_3036 NC_012791.1 3195596 3196483 R PFAM: ABC transporter; KEGG: lch:Lcho_1796 ABC-2 type transporter; ABC transporter complement(3195596..3196483) Variovorax paradoxus S110 7973756 YP_002944922.1 CDS Vapar_3037 NC_012791.1 3196465 3197646 R KEGG: lch:Lcho_1795 hypothetical protein; hypothetical protein complement(3196465..3197646) Variovorax paradoxus S110 7973757 YP_002944923.1 CDS Vapar_3038 NC_012791.1 3197643 3198641 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: lch:Lcho_3851 YVTN beta-propeller repeat-containing protein; 40-residue YVTN family beta-propeller repeat-containing protein complement(3197643..3198641) Variovorax paradoxus S110 7973758 YP_002944924.1 CDS Vapar_3039 NC_012791.1 3198681 3199394 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mpt:Mpe_A2589 ABC efflux transporter ATP-binding protein; ABC transporter complement(3198681..3199394) Variovorax paradoxus S110 7973759 YP_002944925.1 CDS Vapar_3040 NC_012791.1 3199919 3201745 D KEGG: mpt:Mpe_A3393 methanol dehydrogenase protein, large subunit; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; PQQ-dependent dehydrogenase 3199919..3201745 Variovorax paradoxus S110 7973760 YP_002944926.1 CDS Vapar_3041 NC_012791.1 3201860 3202264 D KEGG: mpt:Mpe_A3394 hypothetical protein; hypothetical protein 3201860..3202264 Variovorax paradoxus S110 7973761 YP_002944927.1 CDS Vapar_3042 NC_012791.1 3202261 3203151 D SMART: extracellular solute-binding protein family 3; KEGG: mpt:Mpe_A3395 MxaJ protein; family 3 extracellular solute-binding protein 3202261..3203151 Variovorax paradoxus S110 7973762 YP_002944928.1 CDS Vapar_3043 NC_012791.1 3203178 3203861 D KEGG: lch:Lcho_3109 hypothetical protein; hypothetical protein 3203178..3203861 Variovorax paradoxus S110 7973763 YP_002944929.1 CDS Vapar_3044 NC_012791.1 3203945 3204271 D KEGG: lch:Lcho_3110 hypothetical protein; hypothetical protein 3203945..3204271 Variovorax paradoxus S110 7973764 YP_002944930.1 CDS Vapar_3045 NC_012791.1 3204336 3205277 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; KEGG: mpt:Mpe_A3013 hypothetical protein; 40-residue YVTN family beta-propeller repeat-containing protein 3204336..3205277 Variovorax paradoxus S110 7973765 YP_002944931.1 CDS Vapar_3046 NC_012791.1 3205335 3205880 D KEGG: mpt:Mpe_A3014 MxaD protein; MxaD protein 3205335..3205880 Variovorax paradoxus S110 7973766 YP_002944932.1 CDS Vapar_3047 NC_012791.1 3205902 3206921 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A3278 MoxR protein; ATPase 3205902..3206921 Variovorax paradoxus S110 7973767 YP_002944933.1 CDS Vapar_3048 NC_012791.1 3206926 3207801 D KEGG: mpt:Mpe_A3277 hypothetical protein; hypothetical protein 3206926..3207801 Variovorax paradoxus S110 7973768 YP_002944934.1 CDS Vapar_3049 NC_012791.1 3207798 3208724 D KEGG: mpt:Mpe_A3276 hypothetical protein; hypothetical protein 3207798..3208724 Variovorax paradoxus S110 7973769 YP_002944935.1 CDS Vapar_3050 NC_012791.1 3208740 3209744 D PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: mpt:Mpe_A3275 MxaC protein; von Willebrand factor type A 3208740..3209744 Variovorax paradoxus S110 7973770 YP_002944936.1 CDS Vapar_3051 NC_012791.1 3209741 3210292 D KEGG: mpt:Mpe_A3274 hypothetical protein; hypothetical protein 3209741..3210292 Variovorax paradoxus S110 7973771 YP_002944937.1 CDS Vapar_3052 NC_012791.1 3210289 3211287 D KEGG: mpt:Mpe_A3273 MxaL protein; MxaL protein 3210289..3211287 Variovorax paradoxus S110 7973772 YP_002944938.1 CDS Vapar_3053 NC_012791.1 3211271 3212428 R TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: radical SAM protein; KEGG: azo:azo1190 pyrroloquinoline quinone biosynthesis protein PqqE; pyrroloquinoline quinone biosynthesis protein PqqE complement(3211271..3212428) Variovorax paradoxus S110 7973773 YP_002944939.1 CDS Vapar_3054 NC_012791.1 3212425 3212718 R PFAM: coenzyme PQQ synthesis D; KEGG: dar:Daro_1701 coenzyme PQQ synthesis D; coenzyme PQQ synthesis D complement(3212425..3212718) Variovorax paradoxus S110 7973774 YP_002944940.1 CDS Vapar_3055 NC_012791.1 3212715 3213479 R Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC complement(3212715..3213479) Variovorax paradoxus S110 7973775 YP_002944941.1 CDS Vapar_3056 NC_012791.1 3213499 3214422 R possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB complement(3213499..3214422) Variovorax paradoxus S110 7973776 YP_002944942.1 CDS Vapar_3057 NC_012791.1 3214505 3214579 R TIGRFAM: coenzyme PQQ biosynthesis protein A; PFAM: coenzyme PQQ biosynthesis protein A; KEGG: bcj:BCAM2364 coenzyme PQQ synthesis protein A; coenzyme PQQ biosynthesis protein A complement(3214505..3214579) Variovorax paradoxus S110 7973777 YP_002944943.1 CDS Vapar_3058 NC_012791.1 3214751 3215740 D PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_1698 prolyl aminopeptidase; prolyl aminopeptidase 3214751..3215740 Variovorax paradoxus S110 7973778 YP_002944944.1 CDS Vapar_3059 NC_012791.1 3215737 3217116 D KEGG: mpt:Mpe_A3044 methanol utilization control sensor protein MoxY, PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; histidine kinase 3215737..3217116 Variovorax paradoxus S110 7973779 YP_002944945.1 CDS Vapar_3060 NC_012791.1 3217113 3217760 D PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: mpt:Mpe_A3043 LuxR family DNA binding response regulator; two component LuxR family transcriptional regulator 3217113..3217760 Variovorax paradoxus S110 7973780 YP_002944946.1 CDS Vapar_3061 NC_012791.1 3217761 3218429 R TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: mpt:Mpe_A2629 hydrolase protein; HAD superfamily hydrolase complement(3217761..3218429) Variovorax paradoxus S110 7973781 YP_002944947.1 CDS Vapar_3062 NC_012791.1 3218467 3220359 R TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: chorismate binding-like; aminotransferase class IV; KEGG: mpt:Mpe_A2628 chorismate binding enzyme; para-aminobenzoate synthase subunit I complement(3218467..3220359) Variovorax paradoxus S110 7973782 YP_002944948.1 CDS Vapar_3063 NC_012791.1 3220362 3220895 R TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mpt:Mpe_A2627 formaldehyde-activating enzyme; formaldehyde-activating enzyme complement(3220362..3220895) Variovorax paradoxus S110 7973783 YP_002944949.1 CDS Vapar_3064 NC_012791.1 3220940 3221770 R KEGG: mpt:Mpe_A2626 formylmethanofuran dehydrogenase, subunit C; TIGRFAM: formylmethanofuran dehydrogenase subunit C; PFAM: glutamate synthase subunit alpha domain protein; formylmethanofuran dehydrogenase subunit C complement(3220940..3221770) Variovorax paradoxus S110 7973784 YP_002944950.1 CDS Vapar_3065 NC_012791.1 3221767 3222720 R catalyzes the transfer of a formyl group from formylmethanofuran to tetrahydromethanopterin tetrahydromethanopterin; formylmethanofuran--tetrahydromethanopterin formyltransferase complement(3221767..3222720) Variovorax paradoxus S110 7973785 YP_002944951.1 CDS Vapar_3066 NC_012791.1 3222717 3224402 R TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: amidohydrolase; KEGG: mpt:Mpe_A2624 formylmethanofuran dehydrogenase, subunit A; formylmethanofuran dehydrogenase subunit A complement(3222717..3224402) Variovorax paradoxus S110 7973786 YP_002944952.1 CDS Vapar_3067 NC_012791.1 3224399 3225631 R KEGG: mpt:Mpe_A2623 formylmethanofuran dehydrogenase, subunit B; formylmethanofuran dehydrogenase subunit B complement(3224399..3225631) Variovorax paradoxus S110 7973787 YP_002944953.1 CDS Vapar_3068 NC_012791.1 3225864 3226589 R PFAM: histidine biosynthesis protein; KEGG: lch:Lcho_3137 histidine biosynthesis protein; histidine biosynthesis protein complement(3225864..3226589) Variovorax paradoxus S110 7973788 YP_002944954.1 CDS Vapar_3069 NC_012791.1 3226628 3227620 D PFAM: protein of unknown function DUF201; KEGG: mpt:Mpe_A2621 hypothetical protein; hypothetical protein 3226628..3227620 Variovorax paradoxus S110 7973789 YP_002944955.1 CDS Vapar_3070 NC_012791.1 3227607 3228707 D TIGRFAM: H4MPT-linked C1 transfer pathway protein; PFAM: Hydantoinase/oxoprolinase; KEGG: lch:Lcho_3139 H4MPT-linked C1 transfer pathway protein; H4MPT-linked C1 transfer pathway protein 3227607..3228707 Variovorax paradoxus S110 7973790 YP_002944956.1 CDS Vapar_3071 NC_012791.1 3228707 3229126 D KEGG: lch:Lcho_3140 aspartate/glutamate/uridylate kinase; aspartokinase uridylate kinase-like kinase 3228707..3229126 Variovorax paradoxus S110 7973791 YP_002944957.1 CDS Vapar_3072 NC_012791.1 3229117 3229305 D KEGG: mpt:Mpe_A2619 uncharacterized kinase; kinase 3229117..3229305 Variovorax paradoxus S110 7973792 YP_002944958.1 CDS Vapar_3073 NC_012791.1 3229336 3230040 R PFAM: protein of unknown function DUF556; KEGG: mpt:Mpe_A2618 hypothetical protein; hypothetical protein complement(3229336..3230040) Variovorax paradoxus S110 7973793 YP_002944959.1 CDS Vapar_3074 NC_012791.1 3230037 3230618 R PFAM: protein of unknown function DUF447; KEGG: lch:Lcho_3142 hypothetical protein; hypothetical protein complement(3230037..3230618) Variovorax paradoxus S110 7973794 YP_002944960.1 CDS Vapar_3075 NC_012791.1 3230615 3232102 R PFAM: dihydropteroate synthase DHPS; KEGG: mpt:Mpe_A2616 pterin-binding domain-containing protein; dihydropteroate synthase DHPS complement(3230615..3232102) Variovorax paradoxus S110 7973795 YP_002944961.1 CDS Vapar_3076 NC_012791.1 3232081 3232734 R PFAM: flavoprotein; KEGG: mpt:Mpe_A2615 DNA/pantothenate metabolism flavolike protein; flavoprotein complement(3232081..3232734) Variovorax paradoxus S110 7973796 YP_002944962.1 CDS Vapar_3077 NC_012791.1 3232753 3234801 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: lch:Lcho_3145 fis family GAF modulated sigma54 specific transcriptional regulator; Fis family GAF modulated sigma-54 specific transcriptional regulator complement(3232753..3234801) Variovorax paradoxus S110 7971946 YP_002944963.1 CDS Vapar_3078 NC_012791.1 3235111 3235542 D PFAM: dihydroneopterin aldolase; KEGG: mpt:Mpe_A2613 dihydroneopterin aldolase-like protein; dihydroneopterin aldolase 3235111..3235542 Variovorax paradoxus S110 7974287 YP_002944964.1 CDS Vapar_3079 NC_012791.1 3235607 3236119 R TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mpt:Mpe_A2612 formaldehyde-activating enzyme; formaldehyde-activating enzyme complement(3235607..3236119) Variovorax paradoxus S110 7974288 YP_002944965.1 CDS Vapar_3080 NC_012791.1 3236203 3237150 R PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: mpt:Mpe_A2611 ATP:dephospho-CoA triphosphoribosyl transferase; triphosphoribosyl-dephospho-CoA protein complement(3236203..3237150) Variovorax paradoxus S110 7974289 YP_002944966.1 CDS Vapar_3081 NC_012791.1 3237150 3238103 R TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; KEGG: lch:Lcho_3149 alpha-L-glutamate ligase; RimK family alpha-L-glutamate ligase complement(3237150..3238103) Variovorax paradoxus S110 7974290 YP_002944967.1 CDS Vapar_3082 NC_012791.1 3238106 3239113 R catalyzes the reversible formation of methenyl-H(4)methanopterin from N(5)-formyl-H(4)methanopterin; N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase complement(3238106..3239113) Variovorax paradoxus S110 7974291 YP_002944968.1 CDS Vapar_3083 NC_012791.1 3239110 3240252 R PFAM: protein of unknown function DUF201; KEGG: mpt:Mpe_A2608 hypothetical protein; hypothetical protein complement(3239110..3240252) Variovorax paradoxus S110 7974292 YP_002944969.1 CDS Vapar_3084 NC_012791.1 3240267 3241184 R PFAM: methylene-tetrahydromethanopterin dehydrogenase; KEGG: mpt:Mpe_A2607 methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase; methylenetetrahydrofolate dehydrogenase (NADP(+)) complement(3240267..3241184) Variovorax paradoxus S110 7974293 YP_002944970.1 CDS Vapar_3085 NC_012791.1 3241244 3242290 R TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; KEGG: lch:Lcho_3153 beta-ribofuranosylaminobenzene 5'-phosphate synthase; beta-ribofuranosylaminobenzene 5'-phosphate synthase family complement(3241244..3242290) Variovorax paradoxus S110 7974294 YP_002944971.1 CDS Vapar_3086 NC_012791.1 3242639 3243907 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(3242639..3243907) Variovorax paradoxus S110 7974296 YP_002944972.1 CDS Vapar_3087 NC_012791.1 3243978 3244955 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dia:Dtpsy_2087 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase complement(3243978..3244955) Variovorax paradoxus S110 7974297 YP_002944973.1 CDS Vapar_3088 NC_012791.1 3244980 3245960 R KEGG: pol:Bpro_2863 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit alpha; PFAM: acetyl-CoA carboxylase subunit alpha; acetyl-CoA carboxylase, carboxyl transferase subunit alpha complement(3244980..3245960) Variovorax paradoxus S110 7974298 YP_002944974.1 CDS Vapar_3089 NC_012791.1 3245977 3246630 R PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: rfr:Rfer_1350 HhH-GPD; HhH-GPD family protein complement(3245977..3246630) Variovorax paradoxus S110 7974299 YP_002944975.1 CDS cysS NC_012791.1 3246648 3248027 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(3246648..3248027) Variovorax paradoxus S110 7974300 YP_002944976.1 CDS Vapar_3091 NC_012791.1 3248220 3248810 D PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: rfr:Rfer_1348 tetratricopeptide TPR_2; hypothetical protein 3248220..3248810 Variovorax paradoxus S110 7974301 YP_002944977.1 CDS Vapar_3092 NC_012791.1 3248895 3249494 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dia:Dtpsy_2093 peptidyl-prolyl cis-trans isomerase cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3248895..3249494 Variovorax paradoxus S110 7974302 YP_002944978.1 CDS Vapar_3093 NC_012791.1 3249525 3250037 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pol:Bpro_2868 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3249525..3250037 Variovorax paradoxus S110 7974303 YP_002944979.1 CDS Vapar_3094 NC_012791.1 3250075 3250845 D TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: pol:Bpro_2869 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase 3250075..3250845 Variovorax paradoxus S110 7974304 YP_002944980.1 CDS Vapar_3095 NC_012791.1 3250853 3251644 D PFAM: protein of unknown function DUF980; KEGG: pol:Bpro_2870 protein of unknown function DUF980; hypothetical protein 3250853..3251644 Variovorax paradoxus S110 7974305 YP_002944981.1 CDS Vapar_3096 NC_012791.1 3251717 3254641 R KEGG: vei:Veis_3631 hypothetical protein; hypothetical protein complement(3251717..3254641) Variovorax paradoxus S110 7974306 YP_002944982.1 CDS Vapar_3097 NC_012791.1 3254770 3258597 R PFAM: protein of unknown function DUF748; KEGG: pol:Bpro_2872 protein of unknown function DUF748; hypothetical protein complement(3254770..3258597) Variovorax paradoxus S110 7974307 YP_002944983.1 CDS Vapar_3098 NC_012791.1 3258899 3259066 R hypothetical protein complement(3258899..3259066) Variovorax paradoxus S110 7974308 YP_002944984.1 CDS Vapar_3099 NC_012791.1 3259221 3260039 D PFAM: lytic transglycosylase catalytic; KEGG: aav:Aave_2991 lytic transglycosylase, catalytic; lytic transglycosylase 3259221..3260039 Variovorax paradoxus S110 7974309 YP_002944985.1 CDS glyA NC_012791.1 3260225 3261469 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3260225..3261469 Variovorax paradoxus S110 7974310 YP_002944986.1 CDS Vapar_3101 NC_012791.1 3261489 3261932 D PFAM: ATP-cone domain protein; KEGG: pol:Bpro_2875 hypothetical protein; ATP-cone domain-containing protein 3261489..3261932 Variovorax paradoxus S110 7974311 YP_002944987.1 CDS Vapar_3102 NC_012791.1 3261948 3262394 R KEGG: dac:Daci_5198 fimbrial protein pilin; fimbrial protein pilin complement(3261948..3262394) Variovorax paradoxus S110 7974312 YP_002944988.1 CDS Vapar_3103 NC_012791.1 3262434 3265781 R KEGG: pna:Pnap_2913 type 4 fimbrial biogenesis protein PilY1; type 4 fimbrial biogenesis protein PilY1 complement(3262434..3265781) Variovorax paradoxus S110 7974313 YP_002944989.1 CDS Vapar_3104 NC_012791.1 3265832 3266518 R KEGG: dac:Daci_5190 hypothetical protein; hypothetical protein complement(3265832..3266518) Variovorax paradoxus S110 7974314 YP_002944990.1 CDS Vapar_3105 NC_012791.1 3266515 3267324 R KEGG: pna:Pnap_2911 Tfp pilus assembly protein PilW-like protein; Tfp pilus assembly protein PilW-like protein complement(3266515..3267324) Variovorax paradoxus S110 7974315 YP_002944991.1 CDS Vapar_3106 NC_012791.1 3267321 3267878 R TIGRFAM: type IV pilus modification protein PilV; KEGG: ajs:Ajs_3183 type IV pilus modification protein PilV; type IV pilus modification protein PilV complement(3267321..3267878) Variovorax paradoxus S110 7974316 YP_002944992.1 CDS Vapar_3107 NC_012791.1 3267872 3268303 R KEGG: ajs:Ajs_3181 N-terminal methylation site; N-terminal methylation site complement(3267872..3268303) Variovorax paradoxus S110 7974317 YP_002944993.1 CDS Vapar_3108 NC_012791.1 3268580 3269707 D KEGG: pna:Pnap_2915 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; riboflavin biosynthesis protein RibD 3268580..3269707 Variovorax paradoxus S110 7974318 YP_002944994.1 CDS Vapar_3109 NC_012791.1 3269715 3270428 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3269715..3270428 Variovorax paradoxus S110 7974319 YP_002944995.1 CDS Vapar_3110 NC_012791.1 3270425 3271579 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: pol:Bpro_2885 GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3270425..3271579 Variovorax paradoxus S110 7974320 YP_002944996.1 CDS Vapar_3111 NC_012791.1 3271585 3272055 D KEGG: ajs:Ajs_2767 riboflavin synthase subunit beta; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 3271585..3272055 Variovorax paradoxus S110 7974321 YP_002944997.1 CDS Vapar_3112 NC_012791.1 3272052 3272597 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: aav:Aave_2230 NusB antitermination factor; NusB antitermination factor 3272052..3272597 Variovorax paradoxus S110 7974322 YP_002944998.1 CDS Vapar_3113 NC_012791.1 3272594 3273790 D PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dia:Dtpsy_2259 aminotransferase class I and II; aminotransferase 3272594..3273790 Variovorax paradoxus S110 7974323 YP_002944999.1 CDS Vapar_3114 NC_012791.1 3273787 3274245 D PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2889 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 3273787..3274245 Variovorax paradoxus S110 7974324 YP_002945000.1 CDS Vapar_3115 NC_012791.1 3274242 3274964 D TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: rfr:Rfer_2672 MotA/TolQ/ExbB proton channel; protein TolQ 3274242..3274964 Variovorax paradoxus S110 7974325 YP_002945001.1 CDS Vapar_3116 NC_012791.1 3274981 3275418 D PFAM: biopolymertransporter ExbD/TolR; KEGG: lch:Lcho_2942 biopolymer transport protein ExbD/TolR; biopolymertransporter ExbD/TolR 3274981..3275418 Variovorax paradoxus S110 7974326 YP_002945002.1 CDS Vapar_3117 NC_012791.1 3275422 3276351 D TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: dia:Dtpsy_2263 protein TolA; protein TolA 3275422..3276351 Variovorax paradoxus S110 7974327 YP_002945003.1 CDS Vapar_3118 NC_012791.1 3276397 3279915 R KEGG: dia:Dtpsy_1898 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(3276397..3279915) Variovorax paradoxus S110 7974328 YP_002945004.1 CDS Vapar_3119 NC_012791.1 3279978 3280769 D PFAM: rhodanese domainprotein; SMART: Rhodanese domain protein; KEGG: dac:Daci_4043 rhodanese domain-containing protein; rhodanese domain-containing protein 3279978..3280769 Variovorax paradoxus S110 7974329 YP_002945005.1 CDS Vapar_3120 NC_012791.1 3280801 3281724 R PFAM: pirin; KEGG: pol:Bpro_2897 pirin-like; pirin complement(3280801..3281724) Variovorax paradoxus S110 7974330 YP_002945006.1 CDS Vapar_3121 NC_012791.1 3281750 3282301 R KEGG: pol:Bpro_2899 flavodoxin; flavodoxin complement(3281750..3282301) Variovorax paradoxus S110 7974331 YP_002945007.1 CDS Vapar_3122 NC_012791.1 3282333 3282752 R PFAM: DoxX family protein; KEGG: dia:Dtpsy_1786 DoxX family protein; DoxX family protein complement(3282333..3282752) Variovorax paradoxus S110 7974332 YP_002945008.1 CDS Vapar_3123 NC_012791.1 3282834 3283535 R PFAM: pirin; KEGG: dia:Dtpsy_1785 pirin domain protein; pirin complement(3282834..3283535) Variovorax paradoxus S110 7974333 YP_002945009.1 CDS Vapar_3124 NC_012791.1 3283713 3284666 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rfr:Rfer_1907 LysR family transcriptional regulator; LysR family transcriptional regulator 3283713..3284666 Variovorax paradoxus S110 7974334 YP_002945010.1 CDS Vapar_3125 NC_012791.1 3284809 3285891 D KEGG: rfr:Rfer_1906 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3284809..3285891 Variovorax paradoxus S110 7974335 YP_002945011.1 CDS Vapar_3126 NC_012791.1 3285899 3286822 D PFAM: glutamyl-tRNA synthetase class Ic; KEGG: ajs:Ajs_1982 glutamate--tRNA ligase; glutamate--tRNA ligase 3285899..3286822 Variovorax paradoxus S110 7974336 YP_002945012.1 CDS Vapar_3127 NC_012791.1 3286822 3287580 D KEGG: ajs:Ajs_1981 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 3286822..3287580 Variovorax paradoxus S110 7974337 YP_002945013.1 CDS Vapar_3128 NC_012791.1 3287685 3288848 D PFAM: extracellular ligand-binding receptor; KEGG: pol:Bpro_0789 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3287685..3288848 Variovorax paradoxus S110 7974338 YP_002945014.1 CDS Vapar_3129 NC_012791.1 3288853 3289527 R PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: reh:H16_B1400 transcriptional regulator CRP family; Crp/Fnr family transcriptional regulator complement(3288853..3289527) Variovorax paradoxus S110 7974339 YP_002945015.1 CDS Vapar_3130 NC_012791.1 3289675 3290265 D KEGG: pfl:PFL_1586 hypothetical protein; hypothetical protein 3289675..3290265 Variovorax paradoxus S110 7974340 YP_002945016.1 CDS Vapar_3131 NC_012791.1 3290290 3291057 D PFAM: class II aldolase/adducin family protein; KEGG: pol:Bpro_0069 class II aldolase/adducin-like; class II aldolase/adducin family protein 3290290..3291057 Variovorax paradoxus S110 7974341 YP_002945017.1 CDS Vapar_3132 NC_012791.1 3291148 3292074 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B1211 LysR family transcriptional regulator; LysR family transcriptional regulator 3291148..3292074 Variovorax paradoxus S110 7974342 YP_002945018.1 CDS Vapar_3133 NC_012791.1 3292152 3293582 D catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 3292152..3293582 Variovorax paradoxus S110 7974343 YP_002945019.1 CDS Vapar_3134 NC_012791.1 3293566 3294792 D TIGRFAM: CitB domain protein; KEGG: pol:Bpro_0640 citrate utilization protein B; CitB domain-containing protein 3293566..3294792 Variovorax paradoxus S110 7974344 YP_002945020.1 CDS Vapar_3135 NC_012791.1 3294856 3295836 D PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5278 uncharacterized protein UPF0065; hypothetical protein 3294856..3295836 Variovorax paradoxus S110 7974345 YP_002945021.1 CDS Vapar_3136 NC_012791.1 3295906 3298185 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: sml:Smlt0449 periplasmic beta-glucosidase precursor; glycoside hydrolase family 3 domain-containing protein 3295906..3298185 Variovorax paradoxus S110 7974346 YP_002945022.1 CDS Vapar_3137 NC_012791.1 3298207 3298488 D hypothetical protein 3298207..3298488 Variovorax paradoxus S110 7974347 YP_002945023.1 CDS Vapar_3138 NC_012791.1 3298570 3298920 R KEGG: bpm:BURPS1710b_2862 alpha/beta fold family hydrolase; alpha/beta fold family hydrolase complement(3298570..3298920) Variovorax paradoxus S110 7974348 YP_002945024.1 CDS Vapar_3139 NC_012791.1 3299069 3299416 R TIGRFAM: regulatory protein, FmdB family; KEGG: dac:Daci_0180 FmdB family regulatory protein; FmdB family regulatory protein complement(3299069..3299416) Variovorax paradoxus S110 7974349 YP_002945025.1 CDS Vapar_3140 NC_012791.1 3299428 3300660 R PFAM: Acetamidase/Formamidase; KEGG: dac:Daci_0179 formamidase; Formamidase complement(3299428..3300660) Variovorax paradoxus S110 7974350 YP_002945026.1 CDS Vapar_3141 NC_012791.1 3300688 3301389 R KEGG: dac:Daci_0224 UreA ABC transporter ATP-binding protein UrtE; TIGRFAM: urea ABC transporter ATP-binding protein UrtE; PFAM: ABC transporter; SMART: ATPase AAA; urea ABC transporter ATP-binding protein UrtE complement(3300688..3301389) Variovorax paradoxus S110 7974351 YP_002945027.1 CDS Vapar_3142 NC_012791.1 3301694 3302437 R TIGRFAM: urea ABC transporter ATP-binding protein UrtD; PFAM: ABC transporter; KEGG: mpt:Mpe_A3590 branched-chain amino acid ABC transporter ATP-binding protein; urea ABC transporter ATP-binding protein UrtD complement(3301694..3302437) Variovorax paradoxus S110 7974352 YP_002945028.1 CDS Vapar_3143 NC_012791.1 3302460 3303665 R TIGRFAM: urea ABC transporter permease protein UrtC; PFAM: inner-membrane translocator; KEGG: dac:Daci_0222 UreA ABC transporter permease protein UrtC; urea ABC transporter permease complement(3302460..3303665) Variovorax paradoxus S110 7974353 YP_002945029.1 CDS Vapar_3144 NC_012791.1 3303697 3304611 R TIGRFAM: urea ABC transporter permease protein UrtB; PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A3588 branched-chain amino acid ABC transporter permease protein; urea ABC transporter permease complement(3303697..3304611) Variovorax paradoxus S110 7974354 YP_002945030.1 CDS Vapar_3145 NC_012791.1 3304752 3306020 R TIGRFAM: urea ABC transporter urea binding protein; KEGG: mpt:Mpe_A3587 branched-chain amino acid ABC transporter periplasmic amino acid-binding protein; urea ABC transporter urea binding protein complement(3304752..3306020) Variovorax paradoxus S110 7974355 YP_002945031.1 CDS Vapar_3146 NC_012791.1 3306239 3309661 D PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: mpt:Mpe_A3586 sensor histidine kinase/response regulator; histidine kinase 3306239..3309661 Variovorax paradoxus S110 7974356 YP_002945032.1 CDS Vapar_3147 NC_012791.1 3309639 3310547 D PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: pol:Bpro_0562 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3309639..3310547 Variovorax paradoxus S110 7974357 YP_002945033.1 CDS Vapar_3149 NC_012791.1 3311153 3312304 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: psb:Psyr_4439 sensor histidine kinase; histidine kinase complement(3311153..3312304) Variovorax paradoxus S110 7974359 YP_002945034.1 CDS Vapar_3150 NC_012791.1 3312432 3312716 D hypothetical protein 3312432..3312716 Variovorax paradoxus S110 7974360 YP_002945035.1 CDS Vapar_3151 NC_012791.1 3312702 3313613 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: rru:Rru_A3071 hypothetical protein; hypothetical protein complement(3312702..3313613) Variovorax paradoxus S110 7974361 YP_002945036.1 CDS Vapar_3152 NC_012791.1 3313652 3314425 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bmj:BMULJ_01033 AraC family transcriptional regulator; AraC family transcriptional regulator complement(3313652..3314425) Variovorax paradoxus S110 7974362 YP_002945037.1 CDS Vapar_3153 NC_012791.1 3314562 3315383 D PFAM: extracellular solute-binding protein family 1; KEGG: aav:Aave_3268 extracellular solute-binding protein; family 1 extracellular solute-binding protein 3314562..3315383 Variovorax paradoxus S110 7974363 YP_002945038.1 CDS Vapar_3154 NC_012791.1 3315442 3316191 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: pol:Bpro_3873 extracellular solute-binding protein, family 3; family 3 extracellular solute-binding protein 3315442..3316191 Variovorax paradoxus S110 7974364 YP_002945039.1 CDS Vapar_3155 NC_012791.1 3316393 3316803 R KEGG: bac:BamMC406_6554 hypothetical protein; hypothetical protein complement(3316393..3316803) Variovorax paradoxus S110 7974365 YP_002945040.1 CDS Vapar_3156 NC_012791.1 3316821 3319052 R PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: rpi:Rpic_4680 peptidase M1 membrane alanine aminopeptidase; membrane alanyl aminopeptidase complement(3316821..3319052) Variovorax paradoxus S110 7974366 YP_002945041.1 CDS Vapar_3157 NC_012791.1 3319693 3321006 R PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_0967 major facilitator transporter; major facilitator superfamily protein complement(3319693..3321006) Variovorax paradoxus S110 7974367 YP_002945042.1 CDS Vapar_3158 NC_012791.1 3321051 3322157 R KEGG: vei:Veis_1304 porin; porin complement(3321051..3322157) Variovorax paradoxus S110 7973390 YP_002945043.1 CDS Vapar_3159 NC_012791.1 3322194 3323162 R PFAM: ferredoxin; oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: pol:Bpro_3680 ferredoxin; ferredoxin complement(3322194..3323162) Variovorax paradoxus S110 7973391 YP_002945044.1 CDS Vapar_3160 NC_012791.1 3323181 3324224 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3681 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(3323181..3324224) Variovorax paradoxus S110 7973392 YP_002945045.1 CDS Vapar_3161 NC_012791.1 3324238 3324459 R KEGG: pae:PA3501 hypothetical protein; hypothetical protein complement(3324238..3324459) Variovorax paradoxus S110 7973393 YP_002945046.1 CDS Vapar_3162 NC_012791.1 3324491 3325654 R PFAM: monooxygenase FAD-binding; KEGG: dac:Daci_2905 monooxygenase FAD-binding; FAD-binding monooxygenase complement(3324491..3325654) Variovorax paradoxus S110 7973394 YP_002945047.1 CDS Vapar_3163 NC_012791.1 3325683 3326675 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_1798 hypothetical protein; hypothetical protein complement(3325683..3326675) Variovorax paradoxus S110 7973395 YP_002945048.1 CDS Vapar_3164 NC_012791.1 3326693 3327664 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_3684 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3326693..3327664) Variovorax paradoxus S110 7973396 YP_002945049.1 CDS Vapar_3165 NC_012791.1 3327661 3329139 R PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_3685 betaine-aldehyde dehydrogenase; betaine-aldehyde dehydrogenase complement(3327661..3329139) Variovorax paradoxus S110 7973397 YP_002945050.1 CDS Vapar_3166 NC_012791.1 3329153 3329947 R catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; L-aspartate dehydrogenase complement(3329153..3329947) Variovorax paradoxus S110 7973398 YP_002945051.1 CDS Vapar_3167 NC_012791.1 3329953 3331671 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: dac:Daci_0959 hypothetical protein; hypothetical protein complement(3329953..3331671) Variovorax paradoxus S110 7973399 YP_002945052.1 CDS Vapar_3168 NC_012791.1 3331664 3332515 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpi:Rpic_4505 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(3331664..3332515) Variovorax paradoxus S110 7973400 YP_002945053.1 CDS Vapar_3169 NC_012791.1 3332512 3333348 R PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: pol:Bpro_3689 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(3332512..3333348) Variovorax paradoxus S110 7973401 YP_002945054.1 CDS Vapar_3170 NC_012791.1 3333393 3334268 R PFAM: alpha/beta hydrolase fold; KEGG: pae:PA3509 hydrolase; alpha/beta hydrolase fold protein complement(3333393..3334268) Variovorax paradoxus S110 7973402 YP_002945055.1 CDS Vapar_3171 NC_012791.1 3334286 3334834 R PFAM: cupin; KEGG: rpi:Rpic_4508 cupin 2 conserved barrel domain protein; cupin complement(3334286..3334834) Variovorax paradoxus S110 7973403 YP_002945056.1 CDS Vapar_3172 NC_012791.1 3334869 3335684 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpi:Rpic_4509 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3334869..3335684) Variovorax paradoxus S110 7973404 YP_002945057.1 CDS Vapar_3173 NC_012791.1 3335694 3336680 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3683 twin-arginine translocation pathway signal; hypothetical protein complement(3335694..3336680) Variovorax paradoxus S110 7973405 YP_002945058.1 CDS Vapar_3174 NC_012791.1 3336868 3338124 R PFAM: FAD dependent oxidoreductase; KEGG: bja:blr2222 D-amino acid dehydrogenase small subunit; FAD dependent oxidoreductase complement(3336868..3338124) Variovorax paradoxus S110 7973406 YP_002945059.1 CDS Vapar_3175 NC_012791.1 3338182 3339216 R TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; KEGG: bcj:BCAL2751 Ketopantoate reductase; 2-dehydropantoate 2-reductase complement(3338182..3339216) Variovorax paradoxus S110 7973407 YP_002945060.1 CDS alaS NC_012791.1 3339216 3341840 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(3339216..3341840) Variovorax paradoxus S110 7973408 YP_002945061.1 CDS Vapar_3177 NC_012791.1 3342087 3342908 D KEGG: bcm:Bcenmc03_2701 hypothetical protein; hypothetical protein 3342087..3342908 Variovorax paradoxus S110 7973409 YP_002945062.1 CDS Vapar_3178 NC_012791.1 3343036 3343596 D hypothetical protein 3343036..3343596 Variovorax paradoxus S110 7973410 YP_002945063.1 CDS Vapar_3179 NC_012791.1 3343642 3343971 R KEGG: pol:Bpro_4210 hypothetical protein; hypothetical protein complement(3343642..3343971) Variovorax paradoxus S110 7973411 YP_002945064.1 CDS Vapar_3180 NC_012791.1 3343985 3344224 R hypothetical protein complement(3343985..3344224) Variovorax paradoxus S110 7973412 YP_002945065.1 CDS Vapar_3181 NC_012791.1 3344260 3344658 R hypothetical protein complement(3344260..3344658) Variovorax paradoxus S110 7973413 YP_002945066.1 CDS Vapar_3182 NC_012791.1 3344881 3345138 R hypothetical protein complement(3344881..3345138) Variovorax paradoxus S110 7973415 YP_002945067.1 CDS Vapar_3183 NC_012791.1 3345377 3346150 R KEGG: mes:Meso_2586 hypothetical protein; hypothetical protein complement(3345377..3346150) Variovorax paradoxus S110 7973416 YP_002945068.1 CDS Vapar_3184 NC_012791.1 3347015 3354379 D TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; beta-ketoacyl synthase ; aminotransferase class-III; acyl transferase; phosphopantetheine-binding; KEGG: bph:Bphy_1672 amino acid adenylation domain-containing protein; amino acid adenylation domain-containing protein 3347015..3354379 Variovorax paradoxus S110 7973417 YP_002945069.1 CDS Vapar_3185 NC_012791.1 3354376 3359382 D TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase; amino acid adenylation domain-containing protein 3354376..3359382 Variovorax paradoxus S110 7973418 YP_002945070.1 CDS Vapar_3186 NC_012791.1 3359389 3360150 D PFAM: 4'-phosphopantetheinyl transferase; KEGG: msl:Msil_3806 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 3359389..3360150 Variovorax paradoxus S110 7973419 YP_002945071.1 CDS Vapar_3187 NC_012791.1 3360147 3360965 D KEGG: tgr:Tgr7_2367 hypothetical protein; hypothetical protein 3360147..3360965 Variovorax paradoxus S110 7973420 YP_002945072.1 CDS Vapar_3188 NC_012791.1 3361009 3361896 D KEGG: azc:AZC_4428 hydrolase; hypothetical protein 3361009..3361896 Variovorax paradoxus S110 7973421 YP_002945073.1 CDS Vapar_3189 NC_012791.1 3361928 3363106 D PFAM: polysaccharide export protein; KEGG: pna:Pnap_3196 polysaccharide export protein; polysaccharide export protein 3361928..3363106 Variovorax paradoxus S110 7973422 YP_002945074.1 CDS Vapar_3190 NC_012791.1 3363152 3365446 D KEGG: pna:Pnap_3194 exopolysaccharide transport protein family; TIGRFAM: exopolysaccharide transport protein family; capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; exopolysaccharide transport family protein 3363152..3365446 Variovorax paradoxus S110 7973423 YP_002945075.1 CDS Vapar_3191 NC_012791.1 3365443 3366105 D PFAM: sugar transferase; KEGG: sil:SPO0838 sugar transferase; undecaprenyl-phosphate galactose phosphotransferase 3365443..3366105 Variovorax paradoxus S110 7973424 YP_002945076.1 CDS Vapar_3192 NC_012791.1 3366148 3367128 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: pnu:Pnuc_0303 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3366148..3367128 Variovorax paradoxus S110 7973425 YP_002945077.1 CDS Vapar_3193 NC_012791.1 3367177 3368505 D KEGG: msl:Msil_0459 hypothetical protein; hypothetical protein 3367177..3368505 Variovorax paradoxus S110 7973426 YP_002945078.1 CDS Vapar_3194 NC_012791.1 3368514 3369602 D PFAM: glycosyl transferase group 1; KEGG: xau:Xaut_3559 glycosyl transferase group 1; group 1 glycosyl transferase 3368514..3369602 Variovorax paradoxus S110 7973427 YP_002945079.1 CDS Vapar_3195 NC_012791.1 3369599 3370531 D hypothetical protein 3369599..3370531 Variovorax paradoxus S110 7973428 YP_002945080.1 CDS Vapar_3196 NC_012791.1 3370536 3371474 D hypothetical protein 3370536..3371474 Variovorax paradoxus S110 7973429 YP_002945081.1 CDS Vapar_3197 NC_012791.1 3371506 3372771 D PFAM: polysaccharide biosynthesis protein; KEGG: mrd:Mrad2831_5476 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3371506..3372771 Variovorax paradoxus S110 7973430 YP_002945082.1 CDS Vapar_3198 NC_012791.1 3372768 3374003 D PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_C1076 glycosyl transferase; group 1 glycosyl transferase 3372768..3374003 Variovorax paradoxus S110 7973431 YP_002945083.1 CDS Vapar_3199 NC_012791.1 3374063 3374851 D PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; response regulator receiver; KEGG: pna:Pnap_3628 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator 3374063..3374851 Variovorax paradoxus S110 7973432 YP_002945084.1 CDS Vapar_3200 NC_012791.1 3374891 3376429 D KEGG: pna:Pnap_3192 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 3374891..3376429 Variovorax paradoxus S110 7973433 YP_002945085.1 CDS Vapar_3201 NC_012791.1 3376459 3377058 D KEGG: mch:Mchl_3895 hypothetical protein; hypothetical protein 3376459..3377058 Variovorax paradoxus S110 7973434 YP_002945086.1 CDS Vapar_3202 NC_012791.1 3377152 3377382 D hypothetical protein 3377152..3377382 Variovorax paradoxus S110 7973435 YP_002945087.1 CDS Vapar_3203 NC_012791.1 3377394 3378326 R KEGG: pol:Bpro_2305 hypothetical protein; hypothetical protein complement(3377394..3378326) Variovorax paradoxus S110 7973436 YP_002945088.1 CDS Vapar_3204 NC_012791.1 3378406 3381762 R KEGG: pol:Bpro_2388 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(3378406..3381762) Variovorax paradoxus S110 7973437 YP_002945089.1 CDS Vapar_3205 NC_012791.1 3381755 3383104 R KEGG: dia:Dtpsy_1766 hypothetical protein; hypothetical protein complement(3381755..3383104) Variovorax paradoxus S110 7973438 YP_002945090.1 CDS Vapar_3206 NC_012791.1 3383073 3383879 R KEGG: rfr:Rfer_1225 hypothetical protein; hypothetical protein complement(3383073..3383879) Variovorax paradoxus S110 7973439 YP_002945091.1 CDS Vapar_3207 NC_012791.1 3383997 3385538 R KEGG: mpt:Mpe_A2271 hypothetical protein; hypothetical protein complement(3383997..3385538) Variovorax paradoxus S110 7973440 YP_002945092.1 CDS Vapar_3208 NC_012791.1 3385753 3386724 D PFAM: aldo/keto reductase; KEGG: bbr:BB2876 hypothetical protein; aldo/keto reductase 3385753..3386724 Variovorax paradoxus S110 7973441 YP_002945093.1 CDS Vapar_3209 NC_012791.1 3386738 3387703 R PFAM: conserved hypothetical protein; KEGG: bpt:Bpet2159 secreted protein; hypothetical protein complement(3386738..3387703) Variovorax paradoxus S110 7973442 YP_002945094.1 CDS Vapar_3210 NC_012791.1 3387716 3388843 R PFAM: porin Gram-negative type; KEGG: pol:Bpro_4383 porin precursor transmembrane protein; porin complement(3387716..3388843) Variovorax paradoxus S110 7973443 YP_002945095.1 CDS Vapar_3211 NC_012791.1 3388960 3390657 R PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: bch:Bcen2424_6629 dihydroxy-acid dehydratase; Dihydroxy-acid dehydratase complement(3388960..3390657) Variovorax paradoxus S110 7973444 YP_002945096.1 CDS Vapar_3212 NC_012791.1 3390654 3391106 R PFAM: protein of unknown function DUF126; KEGG: bch:Bcen2424_6625 hypothetical protein; hypothetical protein complement(3390654..3391106) Variovorax paradoxus S110 7973445 YP_002945097.1 CDS Vapar_3213 NC_012791.1 3391318 3392613 R PFAM: protein of unknown function DUF521; KEGG: bcm:Bcenmc03_6224 hypothetical protein; hypothetical protein complement(3391318..3392613) Variovorax paradoxus S110 7973446 YP_002945098.1 CDS Vapar_3214 NC_012791.1 3392658 3393500 R PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: bch:Bcen2424_1199 IclR family transcriptional regulator; IclR family transcriptional regulator complement(3392658..3393500) Variovorax paradoxus S110 7973447 YP_002945099.1 CDS Vapar_3215 NC_012791.1 3393569 3395020 R PFAM: FAD dependent oxidoreductase; KEGG: vei:Veis_3505 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3393569..3395020) Variovorax paradoxus S110 7973448 YP_002945100.1 CDS Vapar_3216 NC_012791.1 3395187 3396185 D PFAM: conserved hypothetical protein; KEGG: reu:Reut_B5251 hypothetical protein; hypothetical protein 3395187..3396185 Variovorax paradoxus S110 7973449 YP_002945101.1 CDS Vapar_3217 NC_012791.1 3396182 3397198 D PFAM: conserved hypothetical protein; KEGG: bbr:BB1727 hypothetical protein; hypothetical protein 3396182..3397198 Variovorax paradoxus S110 7973450 YP_002945102.1 CDS Vapar_3218 NC_012791.1 3397213 3398085 R PFAM: alpha/beta hydrolase fold; KEGG: bpt:Bpet1576 hypothetical protein; alpha/beta hydrolase fold protein complement(3397213..3398085) Variovorax paradoxus S110 7973451 YP_002945103.1 CDS Vapar_3219 NC_012791.1 3398114 3398944 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: aci:ACIAD2249 hypothetical protein; Extradiol ring-cleavage dioxygenase class III protein subunit B complement(3398114..3398944) Variovorax paradoxus S110 7973452 YP_002945104.1 CDS Vapar_3220 NC_012791.1 3399021 3399257 R hypothetical protein complement(3399021..3399257) Variovorax paradoxus S110 7973453 YP_002945105.1 CDS Vapar_3221 NC_012791.1 3399404 3400189 R PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rme:Rmet_1892 LuxR family transcriptional regulator; LuxR family transcriptional regulator complement(3399404..3400189) Variovorax paradoxus S110 7973454 YP_002945106.1 CDS Vapar_3222 NC_012791.1 3400358 3401515 D PFAM: regulatory protein LuxR; PAS fold-4 domain protein; SMART: regulatory protein LuxR; KEGG: pol:Bpro_1379 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 3400358..3401515 Variovorax paradoxus S110 7973455 YP_002945107.1 CDS Vapar_3223 NC_012791.1 3401626 3403488 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_2721 ABC transporter; ABC transporter 3401626..3403488 Variovorax paradoxus S110 7973456 YP_002945108.1 CDS Vapar_3224 NC_012791.1 3403607 3403717 D hypothetical protein 3403607..3403717 Variovorax paradoxus S110 7973457 YP_002945109.1 CDS Vapar_3225 NC_012791.1 3403862 3405271 D KEGG: eba:ebA138 hypothetical protein; hypothetical protein 3403862..3405271 Variovorax paradoxus S110 7973458 YP_002945110.1 CDS Vapar_3226 NC_012791.1 3405268 3406689 D PFAM: GTP-binding protein HSR1-related; KEGG: tmz:Tmz1t_0511 GTP-binding protein HSR1-related; HSR1-like GTP-binding protein 3405268..3406689 Variovorax paradoxus S110 7973459 YP_002945111.1 CDS Vapar_3227 NC_012791.1 3406835 3407194 D KEGG: rle:pRL120260 hypothetical protein; hypothetical protein 3406835..3407194 Variovorax paradoxus S110 7973460 YP_002945112.1 CDS Vapar_3228 NC_012791.1 3407297 3407917 D TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: aav:Aave_0747 Hly-III family protein; hemolysin III family channel protein 3407297..3407917 Variovorax paradoxus S110 7973461 YP_002945113.1 CDS Vapar_3229 NC_012791.1 3408001 3408447 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_5522 hypothetical protein; XRE family transcriptional regulator 3408001..3408447 Variovorax paradoxus S110 7973462 YP_002945114.1 CDS Vapar_3230 NC_012791.1 3408468 3409769 D PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: bbr:BB1554 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3408468..3409769 Variovorax paradoxus S110 7973463 YP_002945115.1 CDS Vapar_3231 NC_012791.1 3409791 3410690 R PFAM: beta-lactamase; KEGG: bcj:BCAM2165 beta-lactamase, class A; beta-lactamase complement(3409791..3410690) Variovorax paradoxus S110 7973464 YP_002945116.1 CDS Vapar_3232 NC_012791.1 3410856 3411197 D PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: mms:mma_1896 ArsR family transcriptional regulator; ArsR family transcriptional regulator 3410856..3411197 Variovorax paradoxus S110 7973465 YP_002945117.1 CDS Vapar_3233 NC_012791.1 3411227 3411763 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bbr:BB2401 hypothetical protein; Activator of Hsp90 ATPase 1 family protein 3411227..3411763 Variovorax paradoxus S110 7973466 YP_002945118.1 CDS Vapar_3234 NC_012791.1 3411854 3412495 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mms:mma_3189 phosphatidylserine synthase; CDP-alcohol phosphatidyltransferase 3411854..3412495 Variovorax paradoxus S110 7973467 YP_002945119.1 CDS Vapar_3235 NC_012791.1 3412522 3413163 D PFAM: phosphoglycerate mutase; KEGG: ara:Arad_14143 mannopine synthesis-like protein; phosphoglycerate mutase 3412522..3413163 Variovorax paradoxus S110 7973468 YP_002945120.1 CDS Vapar_3236 NC_012791.1 3413209 3414171 D PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: bav:BAV0873 curved DNA-binding protein; heat shock protein DnaJ domain-containing protein 3413209..3414171 Variovorax paradoxus S110 7973469 YP_002945121.1 CDS Vapar_3237 NC_012791.1 3414174 3414488 D KEGG: bav:BAV0874 hypothetical protein; hypothetical protein 3414174..3414488 Variovorax paradoxus S110 7973470 YP_002945122.1 CDS Vapar_3238 NC_012791.1 3414513 3415160 R KEGG: rso:RS03060 hypothetical protein; hypothetical protein complement(3414513..3415160) Variovorax paradoxus S110 7973633 YP_002945123.1 CDS Vapar_3239 NC_012791.1 3415171 3415827 R PFAM: OmpA/MotB domain protein; KEGG: azo:azo0281 hypothetical protein; hypothetical protein complement(3415171..3415827) Variovorax paradoxus S110 7973635 YP_002945124.1 CDS Vapar_3240 NC_012791.1 3415827 3417917 R PFAM: protein of unknown function DUF802; KEGG: bxe:Bxe_B0803 transmembrane protein; hypothetical protein complement(3415827..3417917) Variovorax paradoxus S110 7973636 YP_002945125.1 CDS Vapar_3241 NC_012791.1 3417910 3418608 R KEGG: bxe:Bxe_B0802 hypothetical protein; hypothetical protein complement(3417910..3418608) Variovorax paradoxus S110 7973637 YP_002945126.1 CDS Vapar_3242 NC_012791.1 3418736 3419269 R KEGG: bxe:Bxe_B1808 hypothetical protein; hypothetical protein complement(3418736..3419269) Variovorax paradoxus S110 7973638 YP_002945127.1 CDS Vapar_3243 NC_012791.1 3419266 3419493 R KEGG: rso:RS01914 hypothetical protein; hypothetical protein complement(3419266..3419493) Variovorax paradoxus S110 7973639 YP_002945128.1 CDS Vapar_3244 NC_012791.1 3419490 3419966 R PFAM: NUDIX hydrolase; KEGG: rlt:Rleg2_0614 NUDIX hydrolase; NUDIX hydrolase complement(3419490..3419966) Variovorax paradoxus S110 7973640 YP_002945129.1 CDS Vapar_3245 NC_012791.1 3420036 3420611 D KEGG: pzu:PHZ_c0575 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 3420036..3420611 Variovorax paradoxus S110 7973641 YP_002945130.1 CDS Vapar_3246 NC_012791.1 3420719 3421060 R KEGG: CLR6; predicted protein of CLR family; CLR family protein complement(3420719..3421060) Variovorax paradoxus S110 7973642 YP_002945131.1 CDS Vapar_3247 NC_012791.1 3421314 3422204 R KEGG: rle:pRL120479 hypothetical protein; hypothetical protein complement(3421314..3422204) Variovorax paradoxus S110 7973643 YP_002945132.1 CDS Vapar_3248 NC_012791.1 3422222 3424567 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase complement(3422222..3424567) Variovorax paradoxus S110 7973644 YP_002945133.1 CDS Vapar_3249 NC_012791.1 3424669 3425595 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_4448 LysR family transcriptional regulator; LysR family transcriptional regulator 3424669..3425595 Variovorax paradoxus S110 7973645 YP_002945134.1 CDS Vapar_3250 NC_012791.1 3425564 3426508 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bac:BamMC406_0449 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3425564..3426508) Variovorax paradoxus S110 7973646 YP_002945135.1 CDS Vapar_3251 NC_012791.1 3426645 3427937 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_0424 major facilitator transporter; major facilitator superfamily protein 3426645..3427937 Variovorax paradoxus S110 7973647 YP_002945136.1 CDS Vapar_3252 NC_012791.1 3427909 3428064 D hypothetical protein 3427909..3428064 Variovorax paradoxus S110 7973648 YP_002945137.1 CDS Vapar_3253 NC_012791.1 3428077 3428979 R KEGG: aav:Aave_2600 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(3428077..3428979) Variovorax paradoxus S110 7973649 YP_002945138.1 CDS Vapar_3254 NC_012791.1 3429014 3430129 R PFAM: enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_2472 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(3429014..3430129) Variovorax paradoxus S110 7973650 YP_002945139.1 CDS Vapar_3255 NC_012791.1 3430158 3431312 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: dac:Daci_3693 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein complement(3430158..3431312) Variovorax paradoxus S110 7973651 YP_002945140.1 CDS Vapar_3256 NC_012791.1 3431309 3431701 R PFAM: protein of unknown function DUF1311; KEGG: ajs:Ajs_2008 hypothetical protein; hypothetical protein complement(3431309..3431701) Variovorax paradoxus S110 7973652 YP_002945141.1 CDS Vapar_3257 NC_012791.1 3431698 3433221 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase [acylating]; methylmalonate-semialdehyde dehydrogenase complement(3431698..3433221) Variovorax paradoxus S110 7973653 YP_002945142.1 CDS Vapar_3258 NC_012791.1 3433362 3434258 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1814 LysR family transcriptional regulator; LysR family transcriptional regulator 3433362..3434258 Variovorax paradoxus S110 7973654 YP_002945143.1 CDS Vapar_3259 NC_012791.1 3434269 3434601 R KEGG: sal:Sala_1369 hypothetical protein; hypothetical protein complement(3434269..3434601) Variovorax paradoxus S110 7973655 YP_002945144.1 CDS Vapar_3260 NC_012791.1 3434614 3436008 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet2483 carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F complement(3434614..3436008) Variovorax paradoxus S110 7973656 YP_002945145.1 CDS Vapar_3261 NC_012791.1 3436090 3436728 R KEGG: aav:Aave_3126 butyryl-CoA:acetate CoA transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit beta; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit beta complement(3436090..3436728) Variovorax paradoxus S110 7973657 YP_002945146.1 CDS Vapar_3262 NC_012791.1 3436730 3437533 R KEGG: aav:Aave_3127 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, subunit alpha; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit alpha complement(3436730..3437533) Variovorax paradoxus S110 7973658 YP_002945147.1 CDS Vapar_3263 NC_012791.1 3437635 3438201 D PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; PAS domain containing protein; KEGG: pna:Pnap_2659 PAS/PAC sensor protein; LuxR family transcriptional regulator 3437635..3438201 Variovorax paradoxus S110 7973659 YP_002945148.1 CDS Vapar_3264 NC_012791.1 3438317 3438463 D hypothetical protein 3438317..3438463 Variovorax paradoxus S110 7973660 YP_002945149.1 CDS Vapar_3265 NC_012791.1 3438489 3439460 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B0613 probable extra-cytoplasmic solute receptor; hypothetical protein complement(3438489..3439460) Variovorax paradoxus S110 7973661 YP_002945150.1 CDS Vapar_3266 NC_012791.1 3439506 3439886 R KEGG: cti:RALTA_B2224 metallothiol transferase; metallothiol transferase complement(3439506..3439886) Variovorax paradoxus S110 7973662 YP_002945151.1 CDS Vapar_3267 NC_012791.1 3439883 3440866 R PFAM: pyruvate carboxyltransferase; KEGG: dac:Daci_2875 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(3439883..3440866) Variovorax paradoxus S110 7973663 YP_002945152.1 CDS Vapar_3268 NC_012791.1 3440863 3442038 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_A4852 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(3440863..3442038) Variovorax paradoxus S110 7973664 YP_002945153.1 CDS Vapar_3269 NC_012791.1 3442147 3443058 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B2225 transcription regulator, LysR family; LysR family transcriptional regulator 3442147..3443058 Variovorax paradoxus S110 7973665 YP_002945154.1 CDS Vapar_3270 NC_012791.1 3443092 3444042 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_5680 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3443092..3444042) Variovorax paradoxus S110 7973666 YP_002945155.1 CDS Vapar_3271 NC_012791.1 3444146 3445654 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: dac:Daci_0980 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3444146..3445654 Variovorax paradoxus S110 7973667 YP_002945156.1 CDS Vapar_3272 NC_012791.1 3445805 3446623 D KEGG: hypothetical protein; hypothetical protein 3445805..3446623 Variovorax paradoxus S110 7973668 YP_002945157.1 CDS mdoD NC_012791.1 3446845 3448443 D involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 3446845..3448443 Variovorax paradoxus S110 7973669 YP_002945158.1 CDS Vapar_3274 NC_012791.1 3448462 3448890 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dia:Dtpsy_1738 peptidylprolyl isomerase; peptidylprolyl isomerase complement(3448462..3448890) Variovorax paradoxus S110 7973670 YP_002945159.1 CDS Vapar_3275 NC_012791.1 3448993 3450414 D TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: rpd:RPD_2980 ethanolamine permease; ethanolamine transporter 3448993..3450414 Variovorax paradoxus S110 7973671 YP_002945160.1 CDS Vapar_3276 NC_012791.1 3450431 3451825 D PFAM: ethanolamine ammonia lyase large subunit; KEGG: rpd:RPD_2981 ethanolamine ammonia lyase large subunit; ethanolamine ammonia-lyase 3450431..3451825 Variovorax paradoxus S110 7973672 YP_002945161.1 CDS Vapar_3277 NC_012791.1 3451822 3452607 D catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 3451822..3452607 Variovorax paradoxus S110 7973673 YP_002945162.1 CDS Vapar_3278 NC_012791.1 3452677 3453021 D SMART: helix-turn-helix domain protein; KEGG: reu:Reut_C6143 hypothetical protein; XRE family transcriptional regulator 3452677..3453021 Variovorax paradoxus S110 7973674 YP_002945163.1 CDS Vapar_3279 NC_012791.1 3453011 3454273 D PFAM: HipA domain protein; KEGG: nwi:Nwi_2079 hypothetical protein; HipA domain-containing protein 3453011..3454273 Variovorax paradoxus S110 7973675 YP_002945164.1 CDS Vapar_3280 NC_012791.1 3454378 3455646 D KEGG: aci:ACIAD1456 hypothetical protein; hypothetical protein 3454378..3455646 Variovorax paradoxus S110 7973676 YP_002945165.1 CDS Vapar_3281 NC_012791.1 3455708 3456286 D TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: dia:Dtpsy_1757 uncharacterized peroxidase-related enzyme; peroxidase-like protein 3455708..3456286 Variovorax paradoxus S110 7973677 YP_002945166.1 CDS Vapar_3282 NC_012791.1 3456291 3458042 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: ajs:Ajs_1955 sulfatase; sulfatase complement(3456291..3458042) Variovorax paradoxus S110 7973678 YP_002945167.1 CDS Vapar_3283 NC_012791.1 3458100 3458669 R PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: dac:Daci_0931 phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(3458100..3458669) Variovorax paradoxus S110 7973679 YP_002945168.1 CDS Vapar_3284 NC_012791.1 3458656 3459384 R KEGG: aav:Aave_4579 PAP2 (acid phosphatase) superfamily protein; PAP2 (acid phosphatase) superfamily protein complement(3458656..3459384) Variovorax paradoxus S110 7973680 YP_002945169.1 CDS Vapar_3285 NC_012791.1 3459542 3460216 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: dia:Dtpsy_1754 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 3459542..3460216 Variovorax paradoxus S110 7973681 YP_002945170.1 CDS Vapar_3286 NC_012791.1 3460213 3461565 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_1952 integral membrane sensor signal transduction histidine kinase; histidine kinase 3460213..3461565 Variovorax paradoxus S110 7973682 YP_002945171.1 CDS Vapar_3287 NC_012791.1 3461575 3461997 R PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_1898 thioesterase superfamily; thioesterase superfamily protein complement(3461575..3461997) Variovorax paradoxus S110 7973683 YP_002945172.1 CDS Vapar_3288 NC_012791.1 3462019 3462801 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_3017 short chain dehydrogenase; short chain dehydrogenase complement(3462019..3462801) Variovorax paradoxus S110 7973684 YP_002945173.1 CDS Vapar_3289 NC_012791.1 3462920 3464623 D PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase; KEGG: dia:Dtpsy_1751 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 3462920..3464623 Variovorax paradoxus S110 7973685 YP_002945174.1 CDS Vapar_3290 NC_012791.1 3464938 3468591 R PFAM: Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; Hydantoinase/oxoprolinase; KEGG: mpt:Mpe_A2968 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase complement(3464938..3468591) Variovorax paradoxus S110 7973686 YP_002945175.1 CDS Vapar_3291 NC_012791.1 3468626 3469918 R PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: dac:Daci_4975 major facilitator transporter; major facilitator superfamily protein complement(3468626..3469918) Variovorax paradoxus S110 7973687 YP_002945176.1 CDS Vapar_3292 NC_012791.1 3469962 3470777 R PFAM: protein of unknown function DUF1445; KEGG: pol:Bpro_1776 hypothetical protein; hypothetical protein complement(3469962..3470777) Variovorax paradoxus S110 7973688 YP_002945177.1 CDS Vapar_3293 NC_012791.1 3470869 3471774 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_1775 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3470869..3471774) Variovorax paradoxus S110 7973689 YP_002945178.1 CDS Vapar_3294 NC_012791.1 3471813 3472859 D PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: rfr:Rfer_0451 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3471813..3472859 Variovorax paradoxus S110 7973690 YP_002945179.1 CDS Vapar_3295 NC_012791.1 3472923 3473894 D TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ajs:Ajs_1941 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP 3472923..3473894 Variovorax paradoxus S110 7973691 YP_002945180.1 CDS Vapar_3296 NC_012791.1 3473891 3474385 D PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pol:Bpro_1870 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter DctQ component 3473891..3474385 Variovorax paradoxus S110 7973692 YP_002945181.1 CDS Vapar_3297 NC_012791.1 3474382 3475659 D TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; citrate transporter; KEGG: dia:Dtpsy_1742 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM 3474382..3475659 Variovorax paradoxus S110 7973693 YP_002945182.1 CDS Vapar_3298 NC_012791.1 3475752 3476360 D KEGG: pna:Pnap_2682 hypothetical protein; hypothetical protein 3475752..3476360 Variovorax paradoxus S110 7973694 YP_002945183.1 CDS Vapar_3299 NC_012791.1 3476656 3477834 D TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: dia:Dtpsy_1741 glycine cleavage system T protein; glycine cleavage system T protein 3476656..3477834 Variovorax paradoxus S110 7973695 YP_002945184.1 CDS Vapar_3300 NC_012791.1 3477881 3478252 D TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: pna:Pnap_2684 glycine cleavage system H protein; glycine cleavage system H protein 3477881..3478252 Variovorax paradoxus S110 7973696 YP_002945185.1 CDS Vapar_3301 NC_012791.1 3478302 3481208 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3478302..3481208 Variovorax paradoxus S110 7973697 YP_002945186.1 CDS Vapar_3302 NC_012791.1 3481219 3481467 R hypothetical protein complement(3481219..3481467) Variovorax paradoxus S110 7973698 YP_002945187.1 CDS Vapar_3303 NC_012791.1 3481563 3482510 R KEGG: dac:Daci_2496 hypothetical protein; hypothetical protein complement(3481563..3482510) Variovorax paradoxus S110 7973699 YP_002945188.1 CDS Vapar_3304 NC_012791.1 3482638 3483315 R PFAM: phospholipase/carboxylesterase; KEGG: aav:Aave_2306 phospholipase/carboxylesterase; phospholipase/carboxylesterase complement(3482638..3483315) Variovorax paradoxus S110 7973700 YP_002945189.1 CDS Vapar_3305 NC_012791.1 3483320 3484378 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: mpt:Mpe_A3247 dioxygenase; 2-nitropropane dioxygenase NPD complement(3483320..3484378) Variovorax paradoxus S110 7973701 YP_002945190.1 CDS Vapar_3306 NC_012791.1 3484449 3485132 R KEGG: swi:Swit_2748 hypothetical protein; hypothetical protein complement(3484449..3485132) Variovorax paradoxus S110 7973702 YP_002945191.1 CDS Vapar_3307 NC_012791.1 3485182 3486066 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: lch:Lcho_4269 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3485182..3486066) Variovorax paradoxus S110 7973703 YP_002945192.1 CDS Vapar_3308 NC_012791.1 3486182 3486931 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: lch:Lcho_4270 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3486182..3486931 Variovorax paradoxus S110 7973704 YP_002945193.1 CDS Vapar_3309 NC_012791.1 3486991 3488022 D TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr2170 ABC transporter substrate-binding protein; TRAP dicarboxylate transporter subunit DctP 3486991..3488022 Variovorax paradoxus S110 7973705 YP_002945194.1 CDS Vapar_3310 NC_012791.1 3488054 3489943 D TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; tripartite ATP-independent periplasmic transporter DctQ component; citrate transporter; KEGG: bja:blr2171 ABC transporter permease; TRAP dicarboxylate transporter subunit DctM 3488054..3489943 Variovorax paradoxus S110 7973706 YP_002945195.1 CDS Vapar_3311 NC_012791.1 3490036 3490875 D PFAM: transketolase; KEGG: lch:Lcho_4274 transketolase domain-containing protein; transketolase 3490036..3490875 Variovorax paradoxus S110 7973707 YP_002945196.1 CDS Vapar_3312 NC_012791.1 3490875 3491873 D PFAM: transketolase; transketolase domain protein; KEGG: lch:Lcho_4275 transketolase; transketolase 3490875..3491873 Variovorax paradoxus S110 7973708 YP_002945197.1 CDS Vapar_3313 NC_012791.1 3491870 3492793 D PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rpd:RPD_1854 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 3491870..3492793 Variovorax paradoxus S110 7973709 YP_002945198.1 CDS Vapar_3314 NC_012791.1 3492788 3493534 R PFAM: DTW domain containing protein; KEGG: dia:Dtpsy_3320 DTW domain containing protein; DTW domain containing protein complement(3492788..3493534) Variovorax paradoxus S110 7973710 YP_002945199.1 CDS Vapar_3315 NC_012791.1 3493590 3494801 R PFAM: protein of unknown function DUF1501; KEGG: dac:Daci_6011 hypothetical protein; hypothetical protein complement(3493590..3494801) Variovorax paradoxus S110 7973711 YP_002945200.1 CDS Vapar_3316 NC_012791.1 3494825 3496426 R PFAM: hypothetical protein; KEGG: dac:Daci_6010 hypothetical protein; hypothetical protein complement(3494825..3496426) Variovorax paradoxus S110 7973712 YP_002945201.1 CDS Vapar_3317 NC_012791.1 3496432 3496902 R KEGG: cvi:CV_1685 hypothetical protein; hypothetical protein complement(3496432..3496902) Variovorax paradoxus S110 7973713 YP_002945202.1 CDS Vapar_3318 NC_012791.1 3497025 3497708 R PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_0115 DsbA oxidoreductase; DSBA oxidoreductase complement(3497025..3497708) Variovorax paradoxus S110 7973714 YP_002945203.1 CDS Vapar_3319 NC_012791.1 3497747 3499156 R PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: mno:Mnod_0121 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(3497747..3499156) Variovorax paradoxus S110 7973715 YP_002945204.1 CDS Vapar_3320 NC_012791.1 3499187 3501079 R PFAM: xylose isomerase; KEGG: pst:PSPTO_2346 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(3499187..3501079) Variovorax paradoxus S110 7970558 YP_002945205.1 CDS Vapar_3321 NC_012791.1 3501222 3501986 R PFAM: alpha/beta hydrolase fold; KEGG: pna:Pnap_2121 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(3501222..3501986) Variovorax paradoxus S110 7970559 YP_002945206.1 CDS Vapar_3322 NC_012791.1 3501983 3503203 R TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rpi:Rpic_4301 major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter complement(3501983..3503203) Variovorax paradoxus S110 7970560 YP_002945207.1 CDS Vapar_3323 NC_012791.1 3503200 3503628 R PFAM: carboxymuconolactone decarboxylase; KEGG: pol:Bpro_1856 4-carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(3503200..3503628) Variovorax paradoxus S110 7970561 YP_002945208.1 CDS Vapar_3324 NC_012791.1 3503628 3504836 R TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: pol:Bpro_1855 3-carboxy-cis,cis-muconate cycloisomerase; 3-carboxy-cis,cis-muconate cycloisomerase complement(3503628..3504836) Variovorax paradoxus S110 7970562 YP_002945209.1 CDS Vapar_3325 NC_012791.1 3504936 3505769 R PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; UBA/THIF-type NAD/FAD binding protein; KEGG: bph:Bphy_6410 shikimate dehydrogenase substrate binding subunit; shikimate dehydrogenase substrate binding domain-containing protein complement(3504936..3505769) Variovorax paradoxus S110 7970563 YP_002945210.1 CDS Vapar_3326 NC_012791.1 3505786 3506796 R TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4499 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(3505786..3506796) Variovorax paradoxus S110 7970564 YP_002945211.1 CDS Vapar_3327 NC_012791.1 3506847 3508127 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; C4-dicarboxylate anaerobic carrier; KEGG: lch:Lcho_0415 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(3506847..3508127) Variovorax paradoxus S110 7970565 YP_002945212.1 CDS Vapar_3328 NC_012791.1 3508143 3508694 R PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: lch:Lcho_0414 tripartite ATP-independent periplasmic transporter DctQ; tripartite ATP-independent periplasmic transporter DctQ component complement(3508143..3508694) Variovorax paradoxus S110 7970566 YP_002945213.1 CDS Vapar_3329 NC_012791.1 3508727 3509650 R PFAM: shikimate dehydrogenase substrate binding domain protein; KEGG: pol:Bpro_1847 shikimate dehydrogenase; shikimate dehydrogenase substrate binding domain-containing protein complement(3508727..3509650) Variovorax paradoxus S110 7970567 YP_002945214.1 CDS Vapar_3330 NC_012791.1 3509851 3510645 D PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: dac:Daci_4439 IclR family transcriptional regulator; IclR family transcriptional regulator 3509851..3510645 Variovorax paradoxus S110 7970568 YP_002945215.1 CDS Vapar_3331 NC_012791.1 3510719 3511729 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_3271 hypothetical protein; hypothetical protein 3510719..3511729 Variovorax paradoxus S110 7970569 YP_002945216.1 CDS Vapar_3332 NC_012791.1 3511754 3512419 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: dac:Daci_3802 two component transcriptional regulator; winged helix family two component transcriptional regulator 3511754..3512419 Variovorax paradoxus S110 7970570 YP_002945217.1 CDS Vapar_3333 NC_012791.1 3512416 3513822 D PFAM: Two-component sensor kinase domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_1451 histidine kinase; histidine kinase 3512416..3513822 Variovorax paradoxus S110 7970571 YP_002945218.1 CDS Vapar_3334 NC_012791.1 3513840 3514859 D PFAM: conserved hypothetical protein; KEGG: dac:Daci_3804 hypothetical protein; hypothetical protein 3513840..3514859 Variovorax paradoxus S110 7970572 YP_002945219.1 CDS Vapar_3335 NC_012791.1 3515056 3515532 D KEGG: bbt:BBta_4129 hypothetical protein; hypothetical protein 3515056..3515532 Variovorax paradoxus S110 7970573 YP_002945220.1 CDS Vapar_3336 NC_012791.1 3515539 3515877 R KEGG: bra:BRADO6759 hypothetical protein; hypothetical protein complement(3515539..3515877) Variovorax paradoxus S110 7970574 YP_002945221.1 CDS Vapar_3337 NC_012791.1 3515928 3516821 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: xau:Xaut_2433 2-hydroxy-3-oxopropionate reductase; 2-hydroxy-3-oxopropionate reductase complement(3515928..3516821) Variovorax paradoxus S110 7970575 YP_002945222.1 CDS Vapar_3338 NC_012791.1 3516824 3517585 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSp0947 gluconate 5-dehydrogenase oxidoreductase protein; short-chain dehydrogenase/reductase SDR complement(3516824..3517585) Variovorax paradoxus S110 7970576 YP_002945223.1 CDS Vapar_3339 NC_012791.1 3517752 3518705 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: bur:Bcep18194_A3727 D-isomer specific 2-hydroxyacid dehydrogenase; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 3517752..3518705 Variovorax paradoxus S110 7970577 YP_002945224.1 CDS Vapar_3340 NC_012791.1 3518718 3519788 D PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: bcm:Bcenmc03_0609 alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 3518718..3519788 Variovorax paradoxus S110 7970578 YP_002945225.1 CDS Vapar_3341 NC_012791.1 3519807 3520817 R PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: bbt:BBta_0778 LacI family transcription regulator; LacI family transcriptional regulator complement(3519807..3520817) Variovorax paradoxus S110 7970579 YP_002945226.1 CDS Vapar_3342 NC_012791.1 3521049 3521981 D PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: reh:H16_A3012 gluconolactonase; gluconolactonase 3521049..3521981 Variovorax paradoxus S110 7970580 YP_002945227.1 CDS Vapar_3343 NC_012791.1 3521978 3523495 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_2713 ABC transporter; ABC transporter 3521978..3523495 Variovorax paradoxus S110 7970581 YP_002945228.1 CDS Vapar_3344 NC_012791.1 3523492 3524583 D PFAM: inner-membrane translocator; KEGG: vei:Veis_2712 inner-membrane translocator; inner-membrane translocator 3523492..3524583 Variovorax paradoxus S110 7970582 YP_002945229.1 CDS Vapar_3345 NC_012791.1 3524612 3525733 D KEGG: vei:Veis_2711 sugar ABC transporter substrate-binding protein; sugar ABC transporter substrate-binding protein 3524612..3525733 Variovorax paradoxus S110 7970583 YP_002945230.1 CDS Vapar_3346 NC_012791.1 3525824 3526447 D SMART: cytochrome b561 / ferric reductase transmembrane; KEGG: reh:H16_A3010 cytochrome b561 / ferric reductase transmembranedomain; cytochrome b561 / ferric reductase transmembrane 3525824..3526447 Variovorax paradoxus S110 7970584 YP_002945231.1 CDS Vapar_3347 NC_012791.1 3526474 3527505 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sme:SM_b20972 sugar uptake ABC transporter ATP-binding protein; ABC transporter 3526474..3527505 Variovorax paradoxus S110 7970585 YP_002945232.1 CDS Vapar_3348 NC_012791.1 3527600 3528931 D PFAM: extracellular solute-binding protein family 1; KEGG: rde:RD1_3720 sugar ABC transporter periplasmic binding protein; family 1 extracellular solute-binding protein 3527600..3528931 Variovorax paradoxus S110 7970586 YP_002945233.1 CDS Vapar_3349 NC_012791.1 3528951 3529826 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_3719 sugar ABC transporter permease protein; sugar ABC transporter permease 3528951..3529826 Variovorax paradoxus S110 7970587 YP_002945234.1 CDS Vapar_3350 NC_012791.1 3529823 3530647 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_3718 sugar ABC transporter permease protein; sugar ABC transporter permease 3529823..3530647 Variovorax paradoxus S110 7970588 YP_002945235.1 CDS Vapar_3351 NC_012791.1 3530719 3531942 R PFAM: ROK family protein; KEGG: pol:Bpro_3207 hypothetical protein; ROK family protein complement(3530719..3531942) Variovorax paradoxus S110 7970589 YP_002945236.1 CDS Vapar_3352 NC_012791.1 3531935 3532732 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pna:Pnap_2605 ABC transporter; ABC transporter complement(3531935..3532732) Variovorax paradoxus S110 7970590 YP_002945237.1 CDS Vapar_3353 NC_012791.1 3532732 3533691 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_3204 inner-membrane translocator; inner-membrane translocator complement(3532732..3533691) Variovorax paradoxus S110 7970591 YP_002945238.1 CDS Vapar_3354 NC_012791.1 3533708 3534712 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pna:Pnap_2602 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(3533708..3534712) Variovorax paradoxus S110 7970592 YP_002945239.1 CDS Vapar_3355 NC_012791.1 3534908 3535411 R KEGG: bac:BamMC406_6425 pentapeptide repeat-containing protein; pentapeptide repeat-containing protein complement(3534908..3535411) Variovorax paradoxus S110 7970593 YP_002945240.1 CDS Vapar_3356 NC_012791.1 3535794 3537152 D KEGG: hypothetical protein; hypothetical protein 3535794..3537152 Variovorax paradoxus S110 7970594 YP_002945241.1 CDS Vapar_3357 NC_012791.1 3537248 3538438 R PFAM: major facilitator superfamily MFS_1; nucleoside:H symporter; KEGG: reu:Reut_A1258 MFS family nucleoside/H(+) symporter; major facilitator superfamily protein complement(3537248..3538438) Variovorax paradoxus S110 7970595 YP_002945242.1 CDS Vapar_3358 NC_012791.1 3538438 3539550 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(3538438..3539550) Variovorax paradoxus S110 7970596 YP_002945243.1 CDS Vapar_3359 NC_012791.1 3539583 3539768 R hypothetical protein complement(3539583..3539768) Variovorax paradoxus S110 7970597 YP_002945244.1 CDS Vapar_3360 NC_012791.1 3539848 3540318 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pol:Bpro_1366 hypothetical protein; Activator of Hsp90 ATPase 1 family protein complement(3539848..3540318) Variovorax paradoxus S110 7970598 YP_002945245.1 CDS Vapar_3362 NC_012791.1 3540415 3540648 D hypothetical protein 3540415..3540648 Variovorax paradoxus S110 7970600 YP_002945246.1 CDS Vapar_3363 NC_012791.1 3540782 3541204 D PFAM: cupin; KEGG: pol:Bpro_1841 cupin 2, conserved barrel; cupin 3540782..3541204 Variovorax paradoxus S110 7970601 YP_002945247.1 CDS Vapar_3364 NC_012791.1 3541383 3541964 D KEGG: dac:Daci_2400 ArsR family transcriptional regulator; ArsR family transcriptional regulator 3541383..3541964 Variovorax paradoxus S110 7970602 YP_002945248.1 CDS Vapar_3365 NC_012791.1 3541976 3542125 R TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: mms:mma_2012 cyd operon protein YbgT; cyd operon protein YbgT complement(3541976..3542125) Variovorax paradoxus S110 7970603 YP_002945249.1 CDS Vapar_3366 NC_012791.1 3542140 3543294 R TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: mms:mma_2013 cytochrome bd-I oxidase subunit II; cytochrome d ubiquinol oxidase subunit II complement(3542140..3543294) Variovorax paradoxus S110 7970604 YP_002945250.1 CDS Vapar_3367 NC_012791.1 3543291 3544895 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: mms:mma_2014 cytochrome bd-I oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I complement(3543291..3544895) Variovorax paradoxus S110 7970605 YP_002945251.1 CDS Vapar_3368 NC_012791.1 3544946 3546652 R KEGG: mms:mma_2015 ATP-binding component of cytochrome-related transport system; TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter; SMART: ATPase AAA; cysteine ABC transporter permease/ATP-binding protein CydC complement(3544946..3546652) Variovorax paradoxus S110 7970606 YP_002945252.1 CDS Vapar_3369 NC_012791.1 3546649 3548355 R KEGG: mms:mma_2016 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter; SMART: ATPase AAA; cysteine ABC transporter permease/ATP-binding protein CydD complement(3546649..3548355) Variovorax paradoxus S110 7970607 YP_002945253.1 CDS Vapar_3370 NC_012791.1 3548517 3549629 R PFAM: acyltransferase 3; KEGG: ajs:Ajs_2806 acyltransferase 3; acyltransferase 3 complement(3548517..3549629) Variovorax paradoxus S110 7970608 YP_002945254.1 CDS Vapar_3371 NC_012791.1 3549680 3550642 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: pol:Bpro_3140 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase NPD complement(3549680..3550642) Variovorax paradoxus S110 7970609 YP_002945255.1 CDS Vapar_3372 NC_012791.1 3550724 3552514 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(3550724..3552514) Variovorax paradoxus S110 7970610 YP_002945256.1 CDS Vapar_3373 NC_012791.1 3552589 3553521 R PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit; KEGG: vei:Veis_4692 electron transfer flavoprotein, subunit alpha; electron transfer flavoprotein subunit alpha complement(3552589..3553521) Variovorax paradoxus S110 7970611 YP_002945257.1 CDS Vapar_3374 NC_012791.1 3553535 3554284 R PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: dac:Daci_2390 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein alpha/beta-subunit complement(3553535..3554284) Variovorax paradoxus S110 7970612 YP_002945258.1 CDS Vapar_3375 NC_012791.1 3554424 3555704 R PFAM: MscS Mechanosensitive ion channel; KEGG: aav:Aave_2167 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(3554424..3555704) Variovorax paradoxus S110 7970613 YP_002945259.1 CDS Vapar_3376 NC_012791.1 3555744 3556697 R PFAM: histone deacetylase superfamily; KEGG: ajs:Ajs_2813 histone deacetylase superfamily protein; histone deacetylase complement(3555744..3556697) Variovorax paradoxus S110 7970614 YP_002945260.1 CDS Vapar_3377 NC_012791.1 3556784 3557704 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pna:Pnap_1219 ATPase; ATPase 3556784..3557704 Variovorax paradoxus S110 7970615 YP_002945261.1 CDS Vapar_3378 NC_012791.1 3557730 3558701 D PFAM: protein of unknown function DUF58; KEGG: aav:Aave_2162 hypothetical protein; hypothetical protein 3557730..3558701 Variovorax paradoxus S110 7970616 YP_002945262.1 CDS Vapar_3379 NC_012791.1 3558748 3560769 D PFAM: transglutaminase; SMART: transglutaminase; KEGG: pol:Bpro_3148 transglutaminase-like; transglutaminase 3558748..3560769 Variovorax paradoxus S110 7970617 YP_002945263.1 CDS Vapar_3380 NC_012791.1 3560822 3561913 D TIGRFAM: lytic murein transglycosylase B; KEGG: pna:Pnap_1216 lytic murein transglycosylase B; lytic murein transglycosylase B 3560822..3561913 Variovorax paradoxus S110 7970618 YP_002945264.1 CDS Vapar_3381 NC_012791.1 3561918 3562544 D KEGG: dac:Daci_5253 hypothetical protein; hypothetical protein 3561918..3562544 Variovorax paradoxus S110 7970619 YP_002945265.1 CDS Vapar_3382 NC_012791.1 3562576 3563079 R KEGG: rfr:Rfer_3976 hypothetical protein; hypothetical protein complement(3562576..3563079) Variovorax paradoxus S110 7970620 YP_002945266.1 CDS Vapar_3383 NC_012791.1 3563076 3564155 R PFAM: beta-ketoacyl synthase; KEGG: rfr:Rfer_3977 beta-ketoacyl synthase; beta-ketoacyl synthase complement(3563076..3564155) Variovorax paradoxus S110 7970621 YP_002945267.1 CDS Vapar_3384 NC_012791.1 3564152 3564430 R PFAM: phosphopantetheine-binding; KEGG: dar:Daro_2373 acyl carrier protein; phosphopantetheine-binding complement(3564152..3564430) Variovorax paradoxus S110 7970622 YP_002945268.1 CDS Vapar_3385 NC_012791.1 3564427 3565584 R PFAM: ABC transporter; KEGG: rfr:Rfer_3970 hypothetical protein; ABC transporter complement(3564427..3565584) Variovorax paradoxus S110 7970623 YP_002945269.1 CDS Vapar_3386 NC_012791.1 3565594 3566502 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rfr:Rfer_3971 ABC transporter; ABC transporter complement(3565594..3566502) Variovorax paradoxus S110 7970624 YP_002945270.1 CDS Vapar_3387 NC_012791.1 3566841 3567821 R KEGG: rfr:Rfer_3972 hypothetical protein; hypothetical protein complement(3566841..3567821) Variovorax paradoxus S110 7970625 YP_002945271.1 CDS Vapar_3388 NC_012791.1 3567818 3568213 R KEGG: rfr:Rfer_3973 hypothetical protein; hypothetical protein complement(3567818..3568213) Variovorax paradoxus S110 7970626 YP_002945272.1 CDS Vapar_3389 NC_012791.1 3568216 3569349 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(3568216..3569349) Variovorax paradoxus S110 7970627 YP_002945273.1 CDS Vapar_3390 NC_012791.1 3569339 3570271 R KEGG: rfr:Rfer_3975 hypothetical protein; hypothetical protein complement(3569339..3570271) Variovorax paradoxus S110 7970628 YP_002945274.1 CDS Vapar_3391 NC_012791.1 3570483 3572216 R KEGG: dac:Daci_1030 extracellular solute-binding protein; extracellular solute-binding protein complement(3570483..3572216) Variovorax paradoxus S110 7970629 YP_002945275.1 CDS Vapar_3392 NC_012791.1 3572331 3572639 R KEGG: rfr:Rfer_3672 integral membrane protein; integral membrane protein complement(3572331..3572639) Variovorax paradoxus S110 7970630 YP_002945276.1 CDS Vapar_3393 NC_012791.1 3572655 3573467 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0379 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(3572655..3573467) Variovorax paradoxus S110 7970631 YP_002945277.1 CDS Vapar_3394 NC_012791.1 3573796 3574686 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_1027 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(3573796..3574686) Variovorax paradoxus S110 7970632 YP_002945278.1 CDS Vapar_3395 NC_012791.1 3574683 3575753 R PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: pol:Bpro_0479 ABC transporter; ABC transporter complement(3574683..3575753) Variovorax paradoxus S110 7970633 YP_002945279.1 CDS Vapar_3396 NC_012791.1 3575755 3576828 R PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: ajs:Ajs_0384 ABC transporter; ABC transporter complement(3575755..3576828) Variovorax paradoxus S110 7970634 YP_002945280.1 CDS glpD NC_012791.1 3576828 3578501 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(3576828..3578501) Variovorax paradoxus S110 7970635 YP_002945281.1 CDS Vapar_3398 NC_012791.1 3578623 3579390 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; regulatory protein Crp; KEGG: aav:Aave_0603 DeoR family transcriptional regulator; DeoR family transcriptional regulator 3578623..3579390 Variovorax paradoxus S110 7970636 YP_002945282.1 CDS Vapar_3399 NC_012791.1 3579769 3581262 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: dia:Dtpsy_0373 glycerol kinase; glycerol kinase 3579769..3581262 Variovorax paradoxus S110 7970637 YP_002945283.1 CDS Vapar_3400 NC_012791.1 3581284 3581745 R PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: dia:Dtpsy_1934 SH3 type 3 domain protein; hypothetical protein complement(3581284..3581745) Variovorax paradoxus S110 7970638 YP_002945284.1 CDS Vapar_3401 NC_012791.1 3581781 3583625 D PFAM: sulfatase; KEGG: aav:Aave_4610 sulfatase; sulfatase 3581781..3583625 Variovorax paradoxus S110 7970639 YP_002945285.1 CDS Vapar_3402 NC_012791.1 3583650 3584606 R PFAM: protein of unknown function DUF403; KEGG: pol:Bpro_3156 protein of unknown function DUF403; hypothetical protein complement(3583650..3584606) Variovorax paradoxus S110 7971781 YP_002945286.1 CDS Vapar_3403 NC_012791.1 3584618 3586111 R PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pna:Pnap_1206 hypothetical protein; hypothetical protein complement(3584618..3586111) Variovorax paradoxus S110 7972514 YP_002945287.1 CDS Vapar_3404 NC_012791.1 3586203 3588446 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: rfr:Rfer_2476 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 complement(3586203..3588446) Variovorax paradoxus S110 7972515 YP_002945288.1 CDS Vapar_3405 NC_012791.1 3588809 3592351 D PFAM: transglutaminase; transglutaminase domain protein; SMART: transglutaminase; KEGG: pol:Bpro_3159 transglutaminase-like; transglutaminase 3588809..3592351 Variovorax paradoxus S110 7972516 YP_002945289.1 CDS Vapar_3406 NC_012791.1 3592436 3595171 D PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: rfr:Rfer_2497 hypothetical protein; hypothetical protein 3592436..3595171 Variovorax paradoxus S110 7972517 YP_002945290.1 CDS Vapar_3407 NC_012791.1 3595219 3596199 D PFAM: transglutaminase; transglutaminase domain protein; SMART: transglutaminase; KEGG: pol:Bpro_3161 transglutaminase-like; transglutaminase 3595219..3596199 Variovorax paradoxus S110 7972518 YP_002945291.1 CDS Vapar_3408 NC_012791.1 3596196 3596654 D PFAM: endoribonuclease L-PSP; KEGG: rfr:Rfer_2506 endoribonuclease L-PSP; endoribonuclease L-PSP 3596196..3596654 Variovorax paradoxus S110 7972519 YP_002945292.1 CDS Vapar_3409 NC_012791.1 3596680 3597339 R KEGG: bbt:BBta_3190 hypothetical protein; hypothetical protein complement(3596680..3597339) Variovorax paradoxus S110 7972520 YP_002945293.1 CDS Vapar_3410 NC_012791.1 3597384 3598838 R PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: reu:Reut_B5143 major facilitator transporter; major facilitator superfamily protein complement(3597384..3598838) Variovorax paradoxus S110 7972521 YP_002945294.1 CDS Vapar_3411 NC_012791.1 3599047 3599883 R PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; regulatory protein LacI; KEGG: bxe:Bxe_C1233 RpiR family transcriptional regulator; RpiR family transcriptional regulator complement(3599047..3599883) Variovorax paradoxus S110 7972522 YP_002945295.1 CDS Vapar_3412 NC_012791.1 3599934 3600962 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: pna:Pnap_1493 regulatory protein, LacI; LacI family transcriptional regulator complement(3599934..3600962) Variovorax paradoxus S110 7972523 YP_002945296.1 CDS Vapar_3413 NC_012791.1 3600970 3601956 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: pna:Pnap_1485 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(3600970..3601956) Variovorax paradoxus S110 7972524 YP_002945297.1 CDS Vapar_3414 NC_012791.1 3601959 3602912 R PFAM: PfkB domain protein; KEGG: pol:Bpro_1737 PfkB; PfkB domain-containing protein complement(3601959..3602912) Variovorax paradoxus S110 7972525 YP_002945298.1 CDS Vapar_3415 NC_012791.1 3602923 3603666 R PFAM: xylose isomerase; KEGG: pna:Pnap_1487 xylose isomerase domain-containing protein; xylose isomerase complement(3602923..3603666) Variovorax paradoxus S110 7972526 YP_002945299.1 CDS Vapar_3416 NC_012791.1 3603666 3604421 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pna:Pnap_1488 ABC transporter; ABC transporter complement(3603666..3604421) Variovorax paradoxus S110 7972527 YP_002945300.1 CDS Vapar_3417 NC_012791.1 3604449 3605255 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: pna:Pnap_1489 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(3604449..3605255) Variovorax paradoxus S110 7972528 YP_002945301.1 CDS Vapar_3418 NC_012791.1 3605306 3605959 R TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_1491 polar amino acid ABC transporter inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(3605306..3605959) Variovorax paradoxus S110 7972529 YP_002945302.1 CDS Vapar_3419 NC_012791.1 3605989 3606660 R TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_1492 polar amino acid ABC transporter inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(3605989..3606660) Variovorax paradoxus S110 7972530 YP_002945303.1 CDS Vapar_3420 NC_012791.1 3606796 3608496 D KEGG: pol:Bpro_2832 hypothetical protein; hypothetical protein 3606796..3608496 Variovorax paradoxus S110 7972531 YP_002945304.1 CDS Vapar_3421 NC_012791.1 3608501 3609031 R PFAM: isochorismatase hydrolase; KEGG: vfm:VFMJ11_A0729 isochorismatase hydrolase; isochorismatase hydrolase complement(3608501..3609031) Variovorax paradoxus S110 7972532 YP_002945305.1 CDS Vapar_3422 NC_012791.1 3609104 3610696 R KEGG: dol:Dole_1972 hypothetical protein; hypothetical protein complement(3609104..3610696) Variovorax paradoxus S110 7972533 YP_002945306.1 CDS Vapar_3423 NC_012791.1 3610895 3611998 D KEGG: smt:Smal_1708 hypothetical protein; hypothetical protein 3610895..3611998 Variovorax paradoxus S110 7972534 YP_002945307.1 CDS Vapar_3424 NC_012791.1 3612011 3612199 R hypothetical protein complement(3612011..3612199) Variovorax paradoxus S110 7972535 YP_002945308.1 CDS Vapar_3425 NC_012791.1 3612199 3614595 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3612199..3614595) Variovorax paradoxus S110 7972536 YP_002945309.1 CDS Vapar_3426 NC_012791.1 3614642 3615763 R PFAM: Kelch repeat-containing protein; Kelch repeat protein; SMART: Kelch repeat-containing protein; KEGG: mex:Mext_0574 kelch repeat-containing protein; Kelch repeat-containing protein complement(3614642..3615763) Variovorax paradoxus S110 7972537 YP_002945310.1 CDS Vapar_3427 NC_012791.1 3615807 3616694 R PFAM: lytic transglycosylase catalytic; KEGG: pol:Bpro_3164 lytic transglycosylase, catalytic; lytic transglycosylase complement(3615807..3616694) Variovorax paradoxus S110 7972538 YP_002945311.1 CDS Vapar_3428 NC_012791.1 3616721 3618718 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3616721..3618718) Variovorax paradoxus S110 7972539 YP_002945312.1 CDS Vapar_3429 NC_012791.1 3618897 3620120 D PFAM: major facilitator superfamily MFS_1; KEGG: pna:Pnap_1198 major facilitator superfamily transporter; major facilitator superfamily protein 3618897..3620120 Variovorax paradoxus S110 7972540 YP_002945313.1 CDS Vapar_3430 NC_012791.1 3620144 3620284 D KEGG: ajs:Ajs_1012 hypothetical protein; hypothetical protein 3620144..3620284 Variovorax paradoxus S110 7972541 YP_002945314.1 CDS Vapar_3431 NC_012791.1 3620290 3620859 D PFAM: methyltransferase type 11; KEGG: aav:Aave_1338 methyltransferase type 11; type 11 methyltransferase 3620290..3620859 Variovorax paradoxus S110 7972542 YP_002945315.1 CDS Vapar_3432 NC_012791.1 3620939 3621829 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 3620939..3621829 Variovorax paradoxus S110 7972543 YP_002945316.1 CDS Vapar_3433 NC_012791.1 3621975 3623069 D PFAM: NlpBDapX family lipoprotein; KEGG: rfr:Rfer_2096 NlpBDapX lipoprotein; NlpBDapX family lipoprotein 3621975..3623069 Variovorax paradoxus S110 7972544 YP_002945317.1 CDS Vapar_3434 NC_012791.1 3623075 3623851 D PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_3172 beta-lactamase-like; beta-lactamase domain-containing protein 3623075..3623851 Variovorax paradoxus S110 7972545 YP_002945318.1 CDS Vapar_3435 NC_012791.1 3623933 3624208 R KEGG: ajs:Ajs_1007 hypothetical protein; hypothetical protein complement(3623933..3624208) Variovorax paradoxus S110 7972546 YP_002945319.1 CDS Vapar_3436 NC_012791.1 3624302 3624817 R KEGG: rfr:Rfer_2643 hypothetical protein; hypothetical protein complement(3624302..3624817) Variovorax paradoxus S110 7972547 YP_002945320.1 CDS Vapar_3437 NC_012791.1 3624807 3625952 R PFAM: cupin; KEGG: aav:Aave_1332 cupin 4 family protein; cupin complement(3624807..3625952) Variovorax paradoxus S110 7972548 YP_002945321.1 CDS Vapar_3438 NC_012791.1 3625967 3626491 D KEGG: dia:Dtpsy_0919 fkbp-type peptidyl-prolyl cis-trans isomerase; fkbp-type peptidyl-prolyl cis-trans isomerase 3625967..3626491 Variovorax paradoxus S110 7972549 YP_002945322.1 CDS Vapar_3439 NC_012791.1 3626570 3627070 R PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3177 17 kDa surface antigen; 17 kDa surface antigen complement(3626570..3627070) Variovorax paradoxus S110 7972550 YP_002945323.1 CDS dut NC_012791.1 3627245 3627691 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(3627245..3627691) Variovorax paradoxus S110 7972551 YP_002945324.1 CDS Vapar_3441 NC_012791.1 3627694 3628143 R KEGG: azo:azo1418 cobalt-zinc-cadmium resistance protein; hypothetical protein complement(3627694..3628143) Variovorax paradoxus S110 7972552 YP_002945325.1 CDS Vapar_3442 NC_012791.1 3628143 3629366 R KEGG: dia:Dtpsy_0916 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase complement(3628143..3629366) Variovorax paradoxus S110 7972553 YP_002945326.1 CDS pyrG NC_012791.1 3629490 3631169 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3629490..3631169 Variovorax paradoxus S110 7972554 YP_002945327.1 CDS Vapar_3444 NC_012791.1 3631166 3632023 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3631166..3632023 Variovorax paradoxus S110 7972555 YP_002945328.1 CDS Vapar_3445 NC_012791.1 3632020 3632310 D PFAM: protein of unknown function DUF1330; KEGG: dac:Daci_5107 hypothetical protein; hypothetical protein 3632020..3632310 Variovorax paradoxus S110 7972556 YP_002945329.1 CDS Vapar_3446 NC_012791.1 3632345 3633628 D KEGG: pol:Bpro_3184 phosphopyruvate hydratase; TIGRFAM: enolase; PFAM: enolase; enolase 3632345..3633628 Variovorax paradoxus S110 7972557 YP_002945330.1 CDS Vapar_3447 NC_012791.1 3633646 3633924 D PFAM: septum formation initiator; KEGG: aav:Aave_1321 cell division protein FtsB; septum formation initiator 3633646..3633924 Variovorax paradoxus S110 7972558 YP_002945331.1 CDS Vapar_3448 NC_012791.1 3634024 3634650 D TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: mpt:Mpe_A2849 transporter; nicotinamide mononucleotide transporter PnuC 3634024..3634650 Variovorax paradoxus S110 7972559 YP_002945332.1 CDS Vapar_3449 NC_012791.1 3634647 3635348 D KEGG: rfr:Rfer_3247 transcriptional regulatory protein NadR; NAD metabolism ATPase/kinase-like protein 3634647..3635348 Variovorax paradoxus S110 7972560 YP_002945333.1 CDS Vapar_3450 NC_012791.1 3635352 3636317 D KEGG: reh:H16_B1029 hypothetical protein; hypothetical protein 3635352..3636317 Variovorax paradoxus S110 7972561 YP_002945334.1 CDS Vapar_3451 NC_012791.1 3636371 3637378 R PFAM: Hsp33 protein; KEGG: aav:Aave_1319 HSP33 protein; Hsp33 protein complement(3636371..3637378) Variovorax paradoxus S110 7972562 YP_002945335.1 CDS Vapar_3452 NC_012791.1 3637413 3637937 R KEGG: hypothetical protein; hypothetical protein complement(3637413..3637937) Variovorax paradoxus S110 7972563 YP_002945336.1 CDS Vapar_3453 NC_012791.1 3637975 3638787 D PFAM: protein of unknown function DUF455; KEGG: aav:Aave_1317 hypothetical protein; hypothetical protein 3637975..3638787 Variovorax paradoxus S110 7972564 YP_002945337.1 CDS Vapar_3454 NC_012791.1 3638797 3639273 R PFAM: MaoC domain protein dehydratase; KEGG: azo:azo0191 hypothetical protein; MaoC domain-containing protein dehydratase complement(3638797..3639273) Variovorax paradoxus S110 7972565 YP_002945338.1 CDS Vapar_3455 NC_012791.1 3639313 3640446 R TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase; KEGG: bpt:Bpet2191 3-ketoacyl-CoA thiolase; acetyl-CoA acetyltransferase complement(3639313..3640446) Variovorax paradoxus S110 7972566 YP_002945339.1 CDS Vapar_3456 NC_012791.1 3640540 3641130 R PFAM: regulatory protein TetR; KEGG: mms:mma_0920 TetR family transcriptional regulator; TetR family transcriptional regulator complement(3640540..3641130) Variovorax paradoxus S110 7972567 YP_002945340.1 CDS Vapar_3457 NC_012791.1 3641175 3642131 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0989 hypothetical protein; hypothetical protein complement(3641175..3642131) Variovorax paradoxus S110 7972568 YP_002945341.1 CDS Vapar_3458 NC_012791.1 3642181 3643092 R TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase; KEGG: pol:Bpro_3191 tyrosine recombinase XerD subunit; tyrosine recombinase XerD complement(3642181..3643092) Variovorax paradoxus S110 7972569 YP_002945342.1 CDS Vapar_3459 NC_012791.1 3643162 3644136 R PFAM: conserved hypothetical protein; KEGG: dia:Dtpsy_0902 hypothetical protein; hypothetical protein complement(3643162..3644136) Variovorax paradoxus S110 7972570 YP_002945343.1 CDS Vapar_3460 NC_012791.1 3644243 3645160 D PFAM: Auxin Efflux Carrier; KEGG: pna:Pnap_1173 auxin efflux carrier; auxin efflux carrier 3644243..3645160 Variovorax paradoxus S110 7972571 YP_002945344.1 CDS Vapar_3461 NC_012791.1 3645157 3646245 R TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_0985 iron-sulfur cluster binding protein; iron-sulfur cluster binding protein complement(3645157..3646245) Variovorax paradoxus S110 7972572 YP_002945345.1 CDS Vapar_3462 NC_012791.1 3646231 3646740 D PFAM: protein of unknown function UPF0079; KEGG: dac:Daci_5126 hypothetical protein; hypothetical protein 3646231..3646740 Variovorax paradoxus S110 7972573 YP_002945346.1 CDS Vapar_3463 NC_012791.1 3646737 3648293 D KEGG: dac:Daci_5127 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase 3646737..3648293 Variovorax paradoxus S110 7972574 YP_002945347.1 CDS Vapar_3464 NC_012791.1 3648475 3648717 D PFAM: 17 kDa surface antigen; KEGG: sun:SUN_0363 hypothetical protein; 17 kDa surface antigen 3648475..3648717 Variovorax paradoxus S110 7972575 YP_002945348.1 CDS Vapar_3465 NC_012791.1 3648790 3649458 R PFAM: SNARE associated Golgi protein; KEGG: dac:Daci_5129 SNARE associated Golgi protein; hypothetical protein complement(3648790..3649458) Variovorax paradoxus S110 7972576 YP_002945349.1 CDS Vapar_3466 NC_012791.1 3649627 3651495 D TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: pol:Bpro_3209 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 3649627..3651495 Variovorax paradoxus S110 7972577 YP_002945350.1 CDS Vapar_3467 NC_012791.1 3651681 3652679 D KEGG: pol:Bpro_3210 hypothetical protein; hypothetical protein 3651681..3652679 Variovorax paradoxus S110 7972578 YP_002945351.1 CDS Vapar_3468 NC_012791.1 3652713 3653702 D KEGG: aav:Aave_1294 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 3652713..3653702 Variovorax paradoxus S110 7972579 YP_002945352.1 CDS Vapar_3469 NC_012791.1 3653699 3654349 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dia:Dtpsy_2458 ABC transporter; ABC transporter 3653699..3654349 Variovorax paradoxus S110 7972580 YP_002945353.1 CDS Vapar_3470 NC_012791.1 3654355 3655311 R PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pol:Bpro_3215 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta complement(3654355..3655311) Variovorax paradoxus S110 7972581 YP_002945354.1 CDS Vapar_3471 NC_012791.1 3655426 3656130 D PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_1715 transcriptional regulator, GntR family; GntR family transcriptional regulator 3655426..3656130 Variovorax paradoxus S110 7972582 YP_002945355.1 CDS Vapar_3472 NC_012791.1 3656127 3657032 D PFAM: phytanoyl-CoA dioxygenase; KEGG: pol:Bpro_1714 phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase 3656127..3657032 Variovorax paradoxus S110 7972583 YP_002945356.1 CDS Vapar_3473 NC_012791.1 3657037 3658398 D PFAM: oxidoreductase domain protein; SAF domain protein; homoserine dehydrogenase NAD-binding; dihydrodipicolinate reductase; KEGG: pol:Bpro_1713 oxidoreductase-like; oxidoreductase domain-containing protein 3657037..3658398 Variovorax paradoxus S110 7972584 YP_002945357.1 CDS Vapar_3474 NC_012791.1 3658547 3658918 D PFAM: YCII-related; KEGG: ara:Arad_3753 hypothetical protein; YCII-like protein 3658547..3658918 Variovorax paradoxus S110 7972585 YP_002945358.1 CDS Vapar_3475 NC_012791.1 3658915 3660144 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: mlo:mlr4613 ECF family RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 3658915..3660144 Variovorax paradoxus S110 7972586 YP_002945359.1 CDS Vapar_3476 NC_012791.1 3660164 3661588 R PFAM: beta-lactamase; KEGG: sus:Acid_7087 beta-lactamase; beta-lactamase complement(3660164..3661588) Variovorax paradoxus S110 7972587 YP_002945360.1 CDS Vapar_3477 NC_012791.1 3661620 3664274 D PFAM: protein of unknown function DUF214; KEGG: pna:Pnap_1153 hypothetical protein; hypothetical protein 3661620..3664274 Variovorax paradoxus S110 7972588 YP_002945361.1 CDS Vapar_3478 NC_012791.1 3664862 3667405 R PFAM: peptidase S45 penicillin amidase; KEGG: rme:Rmet_5635 peptidase S45, penicillin amidase; peptidase S45 penicillin amidase complement(3664862..3667405) Variovorax paradoxus S110 7972589 YP_002945362.1 CDS Vapar_3479 NC_012791.1 3667505 3668581 D PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dia:Dtpsy_2461 pyridoxal-5'-phosphate-dependent protein beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 3667505..3668581 Variovorax paradoxus S110 7972590 YP_002945363.1 CDS Vapar_3480 NC_012791.1 3668581 3669657 D KEGG: pol:Bpro_3228 secreted hydrolase-like; secreted hydrolase-like protein 3668581..3669657 Variovorax paradoxus S110 7972591 YP_002945364.1 CDS Vapar_3481 NC_012791.1 3669760 3670215 D hypothetical protein 3669760..3670215 Variovorax paradoxus S110 7972592 YP_002945365.1 CDS Vapar_3482 NC_012791.1 3670300 3672135 D PFAM: 5'-nucleotidase domain protein; metallophosphoesterase; KEGG: har:HEAR1476 5'-nucleotidase family protein precursor; 5'-nucleotidase domain-containing protein 3670300..3672135 Variovorax paradoxus S110 7972593 YP_002945366.1 CDS Vapar_3483 NC_012791.1 3672188 3673174 R PFAM: inner-membrane translocator; KEGG: aav:Aave_1285 inner-membrane translocator; inner-membrane translocator complement(3672188..3673174) Variovorax paradoxus S110 7972594 YP_002945367.1 CDS Vapar_3484 NC_012791.1 3673180 3674055 R PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2464 inner-membrane translocator; inner-membrane translocator complement(3673180..3674055) Variovorax paradoxus S110 7972109 YP_002945368.1 CDS Vapar_3485 NC_012791.1 3674139 3675335 R PFAM: extracellular ligand-binding receptor; KEGG: ajs:Ajs_3119 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(3674139..3675335) Variovorax paradoxus S110 7972110 YP_002945369.1 CDS Vapar_3486 NC_012791.1 3675392 3676108 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ajs:Ajs_3121 ABC transporter; ABC transporter complement(3675392..3676108) Variovorax paradoxus S110 7972111 YP_002945370.1 CDS Vapar_3487 NC_012791.1 3676110 3676880 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dac:Daci_5164 ABC transporter; ABC transporter complement(3676110..3676880) Variovorax paradoxus S110 7972112 YP_002945371.1 CDS Vapar_3488 NC_012791.1 3677063 3678298 D PFAM: N-acylglucosamine 2-epimerase; KEGG: lch:Lcho_0453 N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase 3677063..3678298 Variovorax paradoxus S110 7972113 YP_002945372.1 CDS Vapar_3489 NC_012791.1 3678315 3679877 R TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3234 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter complement(3678315..3679877) Variovorax paradoxus S110 7972114 YP_002945373.1 CDS Vapar_3490 NC_012791.1 3679908 3681254 R PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3235 secretion protein HlyD; secretion protein HlyD family protein complement(3679908..3681254) Variovorax paradoxus S110 7972115 YP_002945374.1 CDS Vapar_3491 NC_012791.1 3681294 3682775 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3236 RND efflux system, outer membrane lipoprotein, NodT; NodT family RND efflux system outer membrane lipoprotein complement(3681294..3682775) Variovorax paradoxus S110 7972116 YP_002945375.1 CDS Vapar_3492 NC_012791.1 3682768 3683304 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pol:Bpro_3237 MarR family transcriptional regulator; MarR family transcriptional regulator complement(3682768..3683304) Variovorax paradoxus S110 7972117 YP_002945376.1 CDS Vapar_3493 NC_012791.1 3683381 3685165 D PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: pol:Bpro_3238 ABC transporter; ABC transporter 3683381..3685165 Variovorax paradoxus S110 7972118 YP_002945377.1 CDS Vapar_3494 NC_012791.1 3685184 3685657 R PFAM: protein of unknown function DUF1178; KEGG: mpt:Mpe_A1419 hypothetical protein; hypothetical protein complement(3685184..3685657) Variovorax paradoxus S110 7972119 YP_002945378.1 CDS Vapar_3495 NC_012791.1 3685665 3686279 R PFAM: NUDIX hydrolase; KEGG: bpt:Bpet3178 ADP-ribose pyrophosphatase; NUDIX hydrolase complement(3685665..3686279) Variovorax paradoxus S110 7972120 YP_002945379.1 CDS Vapar_3496 NC_012791.1 3686276 3686584 R KEGG: pol:Bpro_3242 transmembrane protein; transmembrane protein complement(3686276..3686584) Variovorax paradoxus S110 7972121 YP_002945380.1 CDS Vapar_3497 NC_012791.1 3686601 3688088 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(3686601..3688088) Variovorax paradoxus S110 7972122 YP_002945381.1 CDS Vapar_3498 NC_012791.1 3688196 3689671 R KEGG: pol:Bpro_3244 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(3688196..3689671) Variovorax paradoxus S110 7972123 YP_002945382.1 CDS Vapar_3499 NC_012791.1 3689697 3691727 R KEGG: pol:Bpro_3245 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; proton-translocating NADH-quinone oxidoreductase subunit L complement(3689697..3691727) Variovorax paradoxus S110 7972124 YP_002945383.1 CDS Vapar_3500 NC_012791.1 3691735 3692043 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: rfr:Rfer_1503 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L complement(3691735..3692043) Variovorax paradoxus S110 7972125 YP_002945384.1 CDS Vapar_3501 NC_012791.1 3692040 3692696 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: pol:Bpro_3247 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(3692040..3692696) Variovorax paradoxus S110 7972126 YP_002945385.1 CDS Vapar_3502 NC_012791.1 3692735 3693280 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(3692735..3693280) Variovorax paradoxus S110 7972127 YP_002945386.1 CDS Vapar_3503 NC_012791.1 3693298 3694374 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: pol:Bpro_3249 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) complement(3693298..3694374) Variovorax paradoxus S110 7972128 YP_002945387.1 CDS Vapar_3504 NC_012791.1 3694371 3696533 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(3694371..3696533) Variovorax paradoxus S110 7972129 YP_002945388.1 CDS Vapar_3505 NC_012791.1 3696553 3697893 R KEGG: pol:Bpro_3251 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F complement(3696553..3697893) Variovorax paradoxus S110 7972130 YP_002945389.1 CDS Vapar_3506 NC_012791.1 3697893 3698441 R TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: dac:Daci_5176 NADH-quinone oxidoreductase, E subunit; NADH-quinone oxidoreductase, E subunit complement(3697893..3698441) Variovorax paradoxus S110 7972131 YP_002945390.1 CDS Vapar_3507 NC_012791.1 3698452 3699705 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(3698452..3699705) Variovorax paradoxus S110 7972132 YP_002945391.1 CDS Vapar_3508 NC_012791.1 3699707 3700318 R KEGG: pna:Pnap_1426 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C complement(3699707..3700318) Variovorax paradoxus S110 7972133 YP_002945392.1 CDS Vapar_3509 NC_012791.1 3700332 3700811 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(3700332..3700811) Variovorax paradoxus S110 7972134 YP_002945393.1 CDS Vapar_3510 NC_012791.1 3700827 3701186 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: lch:Lcho_1501 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 complement(3700827..3701186) Variovorax paradoxus S110 7972135 YP_002945394.1 CDS secG NC_012791.1 3701457 3701870 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pna:Pnap_1423 preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(3701457..3701870) Variovorax paradoxus S110 7972137 YP_002945395.1 CDS tpiA NC_012791.1 3701910 3702695 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(3701910..3702695) Variovorax paradoxus S110 7972138 YP_002945396.1 CDS Vapar_3513 NC_012791.1 3702689 3703687 R TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_1421 alcohol dehydrogenase; NAD(P)H quinone oxidoreductase complement(3702689..3703687) Variovorax paradoxus S110 7972139 YP_002945397.1 CDS Vapar_3514 NC_012791.1 3703781 3706099 R KEGG: aav:Aave_1259 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; polynucleotide phosphorylase/polyadenylase complement(3703781..3706099) Variovorax paradoxus S110 7972140 YP_002945398.1 CDS rpsO NC_012791.1 3706316 3706582 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3706316..3706582) Variovorax paradoxus S110 7972141 YP_002945399.1 CDS Vapar_3516 NC_012791.1 3706814 3707971 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(3706814..3707971) Variovorax paradoxus S110 7972142 YP_002945400.1 CDS Vapar_3517 NC_012791.1 3707983 3709263 R KEGG: rfr:Rfer_1487 transporter signal peptide protein; transporter signal peptide protein complement(3707983..3709263) Variovorax paradoxus S110 7972143 YP_002945401.1 CDS Vapar_3518 NC_012791.1 3709386 3709757 D PFAM: heat shock protein Hsp20; KEGG: pol:Bpro_3264 heat shock protein HSP20; heat shock protein Hsp20 3709386..3709757 Variovorax paradoxus S110 7972144 YP_002945402.1 CDS Vapar_3519 NC_012791.1 3709949 3710704 D KEGG: har:HEAR2872 hypothetical protein; hypothetical protein 3709949..3710704 Variovorax paradoxus S110 7972145 YP_002945403.1 CDS Vapar_3520 NC_012791.1 3710643 3711701 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(3710643..3711701) Variovorax paradoxus S110 7972146 YP_002945404.1 CDS Vapar_3521 NC_012791.1 3711779 3713059 D PFAM: nitrate and nitrite sensing domain protein; ANTAR domain protein; KEGG: dac:Daci_2378 response regulator receiver/ANTAR domain-containing protein; ANTAR domain-containing protein with unknown sensor 3711779..3713059 Variovorax paradoxus S110 7972147 YP_002945405.1 CDS Vapar_3522 NC_012791.1 3713406 3714650 D KEGG: pol:Bpro_3267 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 3713406..3714650 Variovorax paradoxus S110 7972148 YP_002945406.1 CDS Vapar_3523 NC_012791.1 3714664 3715593 D TIGRFAM: nitrate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_2376 nitrate ABC transporter inner membrane subunit; nitrate ABC transporter inner membrane subunit 3714664..3715593 Variovorax paradoxus S110 7972149 YP_002945407.1 CDS Vapar_3524 NC_012791.1 3715590 3716399 D KEGG: pna:Pnap_1412 nitrate ABC transporter ATPase subunits C and D; TIGRFAM: nitrate ABC transporter ATPases C and D; PFAM: ABC transporter; SMART: ATPase AAA; nitrate ABC transporter ATPases C and D 3715590..3716399 Variovorax paradoxus S110 7972150 YP_002945408.1 CDS Vapar_3525 NC_012791.1 3716425 3717726 R PFAM: ANTAR domain protein; KEGG: mpt:Mpe_A2314 response regulator; ANTAR domain-containing protein with unknown sensor complement(3716425..3717726) Variovorax paradoxus S110 7972151 YP_002945409.1 CDS Vapar_3526 NC_012791.1 3717984 3719249 D PFAM: major facilitator superfamily MFS_1; KEGG: pna:Pnap_1411 major facilitator superfamily transporter; major facilitator superfamily protein 3717984..3719249 Variovorax paradoxus S110 7972152 YP_002945410.1 CDS Vapar_3527 NC_012791.1 3719267 3720967 R PFAM: tyrosine protein kinase; protein phosphatase 2C-like; stage II sporulation E family protein; SMART: serine/threonine protein kinase; protein phosphatase 2C domain protein; tyrosine protein kinase; KEGG: mpt:Mpe_A2316 serine/threonine protein kinase; serine/threonine protein kinase complement(3719267..3720967) Variovorax paradoxus S110 7972153 YP_002945411.1 CDS Vapar_3528 NC_012791.1 3721040 3723502 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: pol:Bpro_3276 assimilatory nitrite reductase (NAD(P)H) large subunit precursor; nitrite reductase (NAD(P)H), large subunit 3721040..3723502 Variovorax paradoxus S110 7972154 YP_002945412.1 CDS Vapar_3529 NC_012791.1 3723522 3723980 D TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pna:Pnap_1405 nitrite reductase (NAD(P)H), small subunit; nitrite reductase (NAD(P)H), small subunit 3723522..3723980 Variovorax paradoxus S110 7972155 YP_002945413.1 CDS Vapar_3530 NC_012791.1 3724004 3726799 D PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; molydopterin dinucleotide-binding region; KEGG: pol:Bpro_3279 assimilatory nitrate reductase (NADH) subunit alpha apoprotein; molybdopterin oxidoreductase 3724004..3726799 Variovorax paradoxus S110 7972156 YP_002945414.1 CDS Vapar_3531 NC_012791.1 3726847 3727752 D PFAM: glycosyl transferase, family 3-like; KEGG: vei:Veis_2293 hypothetical protein; glycosyl transferase family protein 3726847..3727752 Variovorax paradoxus S110 7972157 YP_002945415.1 CDS Vapar_3532 NC_012791.1 3727749 3728555 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dia:Dtpsy_2332 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 3727749..3728555 Variovorax paradoxus S110 7972158 YP_002945416.1 CDS Vapar_3533 NC_012791.1 3728694 3729812 D PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: pol:Bpro_1011 ABC transporter; ABC transporter 3728694..3729812 Variovorax paradoxus S110 7972159 YP_002945417.1 CDS Vapar_3534 NC_012791.1 3729901 3731169 D KEGG: pol:Bpro_1010 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 3729901..3731169 Variovorax paradoxus S110 7972160 YP_002945418.1 CDS Vapar_3535 NC_012791.1 3731174 3732091 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2471 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 3731174..3732091 Variovorax paradoxus S110 7972161 YP_002945419.1 CDS Vapar_3536 NC_012791.1 3732431 3733321 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1008 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 3732431..3733321 Variovorax paradoxus S110 7972162 YP_002945420.1 CDS Vapar_3537 NC_012791.1 3733433 3734563 D PFAM: fatty acid hydroxylase; KEGG: aav:Aave_2098 sterol desaturase; fatty acid hydroxylase 3733433..3734563 Variovorax paradoxus S110 7972163 YP_002945421.1 CDS Vapar_3538 NC_012791.1 3734563 3735354 D KEGG: ypg:YpAngola_A3877 hypothetical protein; hypothetical protein 3734563..3735354 Variovorax paradoxus S110 7972164 YP_002945422.1 CDS Vapar_3539 NC_012791.1 3735384 3736592 D PFAM: HI0933 family protein; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: dia:Dtpsy_2335 HI0933 family protein; hypothetical protein 3735384..3736592 Variovorax paradoxus S110 7972165 YP_002945423.1 CDS rpsU NC_012791.1 3736743 3736955 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3736743..3736955 Variovorax paradoxus S110 7972166 YP_002945424.1 CDS Vapar_3541 NC_012791.1 3737063 3737515 D KEGG: aav:Aave_2091 GatB/YqeY domain-containing protein; GatB/YqeY domain-containing protein 3737063..3737515 Variovorax paradoxus S110 7972167 YP_002945425.1 CDS Vapar_3542 NC_012791.1 3737515 3737988 D PFAM: NUDIX hydrolase; KEGG: pen:PSEEN3674 hydrolase, MutT/NUDIX family; NUDIX hydrolase 3737515..3737988 Variovorax paradoxus S110 7972168 YP_002945426.1 CDS Vapar_3543 NC_012791.1 3738013 3738825 R PFAM: protein of unknown function DUF81; KEGG: bbr:BB1250 hypothetical protein; hypothetical protein complement(3738013..3738825) Variovorax paradoxus S110 7972169 YP_002945427.1 CDS Vapar_3544 NC_012791.1 3738883 3739788 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_2444 LysR family transcriptional regulator; LysR family transcriptional regulator 3738883..3739788 Variovorax paradoxus S110 7972170 YP_002945428.1 CDS Vapar_3545 NC_012791.1 3739813 3740355 R PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: pae:PA0145 hypothetical protein; nucleoside 2-deoxyribosyltransferase complement(3739813..3740355) Variovorax paradoxus S110 7972171 YP_002945429.1 CDS Vapar_3546 NC_012791.1 3740426 3740701 D KEGG: bph:Bphy_5182 hypothetical protein; hypothetical protein 3740426..3740701 Variovorax paradoxus S110 7972172 YP_002945430.1 CDS Vapar_3547 NC_012791.1 3740705 3741175 R KEGG: pol:Bpro_0272 cupin region; cupin region complement(3740705..3741175) Variovorax paradoxus S110 7972173 YP_002945431.1 CDS Vapar_3548 NC_012791.1 3741246 3741605 R PFAM: globin; KEGG: lch:Lcho_0052 globin; globin complement(3741246..3741605) Variovorax paradoxus S110 7972174 YP_002945432.1 CDS Vapar_3549 NC_012791.1 3741726 3744794 R PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sus:Acid_5780 serine/threonine protein kinase; LuxR family transcriptional regulator complement(3741726..3744794) Variovorax paradoxus S110 7972175 YP_002945433.1 CDS Vapar_3550 NC_012791.1 3744866 3745807 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pol:Bpro_1731 AraC family transcriptional regulator; AraC family transcriptional regulator complement(3744866..3745807) Variovorax paradoxus S110 7972176 YP_002945434.1 CDS Vapar_3551 NC_012791.1 3746024 3746818 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_1732 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 3746024..3746818 Variovorax paradoxus S110 7972177 YP_002945435.1 CDS Vapar_3552 NC_012791.1 3746835 3748205 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: dia:Dtpsy_0971 peptidase U62 modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(3746835..3748205) Variovorax paradoxus S110 7972178 YP_002945436.1 CDS Vapar_3553 NC_012791.1 3748311 3748967 D PFAM: protein of unknown function DUF615; KEGG: dia:Dtpsy_0970 protein of unknown function DUF615; hypothetical protein 3748311..3748967 Variovorax paradoxus S110 7972179 YP_002945437.1 CDS Vapar_3554 NC_012791.1 3748964 3749548 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dac:Daci_2321 molybdenum cofactor synthesis domain-containing protein; molybdenum cofactor synthesis domain-containing protein 3748964..3749548 Variovorax paradoxus S110 7972180 YP_002945438.1 CDS Vapar_3555 NC_012791.1 3749538 3752726 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_1849 CzcA family heavy metal efflux protein; CzcA family heavy metal efflux pump complement(3749538..3752726) Variovorax paradoxus S110 7972181 YP_002945439.1 CDS Vapar_3556 NC_012791.1 3752736 3754037 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mms:mma_1793 CzcB family cobalt/zinc/cadmium efflux transporter membrane fusion protein; RND family efflux transporter MFP subunit complement(3752736..3754037) Variovorax paradoxus S110 7972182 YP_002945440.1 CDS Vapar_3557 NC_012791.1 3754055 3755383 R PFAM: outer membrane efflux protein; KEGG: har:HEAR1614 cobalt-zinc-cadmium resistance protein CzcC precursor (cation efflux system protein CzcC); outer membrane efflux protein complement(3754055..3755383) Variovorax paradoxus S110 7972183 YP_002945441.1 CDS Vapar_3558 NC_012791.1 3755487 3755861 R KEGG: dar:Daro_2621 hypothetical protein; hypothetical protein complement(3755487..3755861) Variovorax paradoxus S110 7972184 YP_002945442.1 CDS Vapar_3559 NC_012791.1 3756024 3756701 D KEGG: bpa:BPP3998 two-component response regulator; TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; two component heavy metal response transcriptional regulator, winged helix family 3756024..3756701 Variovorax paradoxus S110 7972185 YP_002945443.1 CDS Vapar_3560 NC_012791.1 3756698 3758032 D KEGG: tmz:Tmz1t_2389 heavy metal sensor kinase; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; heavy metal sensor signal transduction histidine kinase 3756698..3758032 Variovorax paradoxus S110 7972186 YP_002945444.1 CDS Vapar_3561 NC_012791.1 3758040 3759302 R PFAM: sodium/hydrogen exchanger; KEGG: xac:XAC0254 Na+/H+-exchanging protein; sodium/hydrogen exchanger complement(3758040..3759302) Variovorax paradoxus S110 7972187 YP_002945445.1 CDS Vapar_3562 NC_012791.1 3759388 3761676 R TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: pna:Pnap_4001 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(3759388..3761676) Variovorax paradoxus S110 7972188 YP_002945446.1 CDS Vapar_3563 NC_012791.1 3761741 3762214 D KEGG: mpt:Mpe_A1657 transcriptional regulator; TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 3761741..3762214 Variovorax paradoxus S110 7972189 YP_002945447.1 CDS Vapar_3564 NC_012791.1 3762394 3763164 R TIGRFAM: serine O-acetyltransferase; KEGG: aav:Aave_2076 serine O-acetyltransferase; serine O-acetyltransferase complement(3762394..3763164) Variovorax paradoxus S110 7972676 YP_002945448.1 CDS Vapar_3565 NC_012791.1 3763245 3763976 R TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: aav:Aave_2075 tRNA/rRNA methyltransferase (SpoU); TrmH family RNA methyltransferase complement(3763245..3763976) Variovorax paradoxus S110 7970640 YP_002945449.1 CDS Vapar_3566 NC_012791.1 3764098 3765159 D PFAM: inositol monophosphatase; KEGG: dia:Dtpsy_0963 inositol-phosphate phosphatase; inositol monophosphatase 3764098..3765159 Variovorax paradoxus S110 7970641 YP_002945450.1 CDS Vapar_3567 NC_012791.1 3765159 3767399 D PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: aav:Aave_2243 protein of unknown function DUF893, YccS/YhfK; hypothetical protein 3765159..3767399 Variovorax paradoxus S110 7970642 YP_002945451.1 CDS Vapar_3568 NC_012791.1 3767399 3768460 D PFAM: MscS Mechanosensitive ion channel; KEGG: reu:Reut_B4345 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 3767399..3768460 Variovorax paradoxus S110 7970643 YP_002945452.1 CDS Vapar_3569 NC_012791.1 3768480 3768938 R PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: cvi:CV_1714 AsnC family transcriptional regulator; AsnC family transcriptional regulator complement(3768480..3768938) Variovorax paradoxus S110 7970644 YP_002945453.1 CDS Vapar_3570 NC_012791.1 3769046 3769669 D PFAM: lysine exporter (LYSE/YGGA); KEGG: bcj:BCAM1596 LysE family transporter; lysine exporter LysE/YggA 3769046..3769669 Variovorax paradoxus S110 7970645 YP_002945454.1 CDS Vapar_3571 NC_012791.1 3769642 3770859 R PFAM: protein of unknown function DUF418; protein of unknown function DUF405; KEGG: bbr:BB3226 hypothetical protein; hypothetical protein complement(3769642..3770859) Variovorax paradoxus S110 7970646 YP_002945455.1 CDS Vapar_3572 NC_012791.1 3770856 3771824 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpi:Rpic_1317 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3770856..3771824) Variovorax paradoxus S110 7970647 YP_002945456.1 CDS Vapar_3573 NC_012791.1 3771950 3772960 D PFAM: conserved hypothetical protein; KEGG: dac:Daci_5403 hypothetical protein; hypothetical protein 3771950..3772960 Variovorax paradoxus S110 7970648 YP_002945457.1 CDS Vapar_3574 NC_012791.1 3772932 3773456 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dac:Daci_0294 MarR family transcriptional regulator; MarR family transcriptional regulator complement(3772932..3773456) Variovorax paradoxus S110 7970649 YP_002945458.1 CDS Vapar_3575 NC_012791.1 3773562 3774566 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B0202 probable extra-cytoplasmic solute receptor; hypothetical protein 3773562..3774566 Variovorax paradoxus S110 7970650 YP_002945459.1 CDS Vapar_3576 NC_012791.1 3774602 3775594 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_2295 hypothetical protein; hypothetical protein 3774602..3775594 Variovorax paradoxus S110 7970651 YP_002945460.1 CDS Vapar_3577 NC_012791.1 3775609 3776925 D PFAM: sulfatase; KEGG: vei:Veis_2294 sulfatase; sulfatase 3775609..3776925 Variovorax paradoxus S110 7970652 YP_002945461.1 CDS Vapar_3578 NC_012791.1 3776977 3777606 R KEGG: reh:H16_A1249 hypothetical protein; hypothetical protein complement(3776977..3777606) Variovorax paradoxus S110 7970653 YP_002945462.1 CDS Vapar_3579 NC_012791.1 3777679 3781002 R KEGG: reh:H16_A1248 predicted signal transduction protein containingCHASE, PAS, GGDEF and EAL domains; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; CHASE domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(3777679..3781002) Variovorax paradoxus S110 7970654 YP_002945463.1 CDS Vapar_3580 NC_012791.1 3781393 3782220 D PFAM: metal-dependent hydrolase HDOD; KEGG: rfr:Rfer_2482 signal transduction protein; signal transduction protein 3781393..3782220 Variovorax paradoxus S110 7970655 YP_002945464.1 CDS Vapar_3581 NC_012791.1 3782427 3784700 D KEGG: bxe:Bxe_B0345 hypothetical protein; hypothetical protein 3782427..3784700 Variovorax paradoxus S110 7970656 YP_002945465.1 CDS Vapar_3582 NC_012791.1 3784697 3786127 D PFAM: Di-haem cytochrome C peroxidase; KEGG: bxe:Bxe_B0346 cytochrome C peroxidase; Di-heme cytochrome C peroxidase 3784697..3786127 Variovorax paradoxus S110 7970657 YP_002945466.1 CDS Vapar_3583 NC_012791.1 3786145 3786753 D KEGG: bxe:Bxe_B0347 hypothetical protein; hypothetical protein 3786145..3786753 Variovorax paradoxus S110 7970658 YP_002945467.1 CDS Vapar_3584 NC_012791.1 3786758 3787648 D KEGG: bxe:Bxe_B0348 procollagen-proline,2-oxoglutarate-4-dioxygenase; PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase subunit alpha; Procollagen-proline dioxygenase 3786758..3787648 Variovorax paradoxus S110 7970659 YP_002945468.1 CDS Vapar_3585 NC_012791.1 3787747 3788358 D PFAM: transcriptional regulator PadR family protein; KEGG: mms:mma_1845 transcriptional regulator; PadR-like family transcriptional regulator 3787747..3788358 Variovorax paradoxus S110 7970660 YP_002945469.1 CDS Vapar_3586 NC_012791.1 3788377 3789216 D PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: mms:mma_1846 iron utilization protein; Siderophore-interacting protein 3788377..3789216 Variovorax paradoxus S110 7970661 YP_002945470.1 CDS Vapar_3587 NC_012791.1 3789356 3790333 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: dac:Daci_4421 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(3789356..3790333) Variovorax paradoxus S110 7970662 YP_002945471.1 CDS Vapar_3588 NC_012791.1 3790370 3790984 R hypothetical protein complement(3790370..3790984) Variovorax paradoxus S110 7970663 YP_002945472.1 CDS Vapar_3589 NC_012791.1 3791082 3793739 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3791082..3793739 Variovorax paradoxus S110 7970664 YP_002945473.1 CDS Vapar_3590 NC_012791.1 3793767 3794606 D PFAM: 20S proteasome A and subunit betas; KEGG: pna:Pnap_1358 20S proteasome, A and subunit betas; 20S proteasome subunit A and B 3793767..3794606 Variovorax paradoxus S110 7970665 YP_002945474.1 CDS Vapar_3591 NC_012791.1 3794624 3795433 D KEGG: pna:Pnap_1357 hypothetical protein; hypothetical protein 3794624..3795433 Variovorax paradoxus S110 7970666 YP_002945475.1 CDS Vapar_3592 NC_012791.1 3795448 3796155 D PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: reh:H16_B0621 response regulator, NarL-family; two component LuxR family transcriptional regulator 3795448..3796155 Variovorax paradoxus S110 7970667 YP_002945476.1 CDS Vapar_3593 NC_012791.1 3796184 3798412 R PFAM: YadA domain protein; Hep_Hag repeat-containing protein; Haemagluttinin domain protein; KEGG: bpl:BURPS1106A_2083 outer membrane protein; YadA domain-containing protein complement(3796184..3798412) Variovorax paradoxus S110 7970668 YP_002945477.1 CDS Vapar_3594 NC_012791.1 3798518 3800398 D PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rme:Rmet_0613 periplasmic sensor signal transduction histidine kinase; histidine kinase 3798518..3800398 Variovorax paradoxus S110 7970669 YP_002945478.1 CDS Vapar_3595 NC_012791.1 3800585 3801262 D PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: reh:H16_B0621 response regulator, NarL-family; two component LuxR family transcriptional regulator 3800585..3801262 Variovorax paradoxus S110 7970670 YP_002945479.1 CDS Vapar_3596 NC_012791.1 3801269 3803617 R PFAM: ferredoxin; FAD-binding 9 siderophore-interacting domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; cytochrome P450; KEGG: reh:H16_B1279 two domain protein: cytochrome P450; ferredoxin complement(3801269..3803617) Variovorax paradoxus S110 7970671 YP_002945480.1 CDS Vapar_3597 NC_012791.1 3803628 3804599 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B5277 hypothetical protein; hypothetical protein complement(3803628..3804599) Variovorax paradoxus S110 7970672 YP_002945481.1 CDS Vapar_3598 NC_012791.1 3804726 3805547 D PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: reh:H16_B1281 transcriptional regulator, IclR-family; IclR family transcriptional regulator 3804726..3805547 Variovorax paradoxus S110 7970673 YP_002945482.1 CDS Vapar_3599 NC_012791.1 3805569 3806393 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3805569..3806393) Variovorax paradoxus S110 7970674 YP_002945483.1 CDS Vapar_3600 NC_012791.1 3806474 3807130 R KEGG: dac:Daci_2801 Asp/Glu racemase; Asp/Glu racemase complement(3806474..3807130) Variovorax paradoxus S110 7970675 YP_002945484.1 CDS Vapar_3601 NC_012791.1 3807144 3808058 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dac:Daci_2798 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(3807144..3808058) Variovorax paradoxus S110 7970676 YP_002945485.1 CDS Vapar_3602 NC_012791.1 3808121 3809455 R PFAM: aminotransferase class-III; KEGG: vei:Veis_1705 hypothetical protein; hypothetical protein complement(3808121..3809455) Variovorax paradoxus S110 7970677 YP_002945486.1 CDS Vapar_3603 NC_012791.1 3809593 3810459 D PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: hypothetical protein; RpiR family transcriptional regulator 3809593..3810459 Variovorax paradoxus S110 7970678 YP_002945487.1 CDS Vapar_3604 NC_012791.1 3810567 3810932 D KEGG: pol:Bpro_2330 hypothetical protein; hypothetical protein 3810567..3810932 Variovorax paradoxus S110 7970679 YP_002945488.1 CDS Vapar_3605 NC_012791.1 3811018 3812526 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pna:Pnap_2594 RND efflux system outer membrane lipoprotein; NodT family RND efflux system outer membrane lipoprotein complement(3811018..3812526) Variovorax paradoxus S110 7970680 YP_002945489.1 CDS Vapar_3606 NC_012791.1 3812535 3815777 R PFAM: acriflavin resistance protein; KEGG: aav:Aave_2040 acriflavin resistance protein; acriflavin resistance protein complement(3812535..3815777) Variovorax paradoxus S110 7970681 YP_002945490.1 CDS Vapar_3607 NC_012791.1 3815774 3818965 R PFAM: acriflavin resistance protein; KEGG: pna:Pnap_2592 acriflavin resistance protein; acriflavin resistance protein complement(3815774..3818965) Variovorax paradoxus S110 7970682 YP_002945491.1 CDS Vapar_3608 NC_012791.1 3819009 3820346 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_2038 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit complement(3819009..3820346) Variovorax paradoxus S110 7970683 YP_002945492.1 CDS Vapar_3609 NC_012791.1 3820574 3821095 D KEGG: mmw:Mmwyl1_4380 hypothetical protein; hypothetical protein 3820574..3821095 Variovorax paradoxus S110 7970684 YP_002945493.1 CDS Vapar_3610 NC_012791.1 3821127 3822080 D PFAM: fatty acid hydroxylase; KEGG: rpi:Rpic_3502 fatty acid hydroxylase; fatty acid hydroxylase 3821127..3822080 Variovorax paradoxus S110 7970685 YP_002945494.1 CDS Vapar_3611 NC_012791.1 3822077 3822373 D KEGG: dac:Daci_2264 hypothetical protein; hypothetical protein 3822077..3822373 Variovorax paradoxus S110 7970686 YP_002945495.1 CDS Vapar_3612 NC_012791.1 3822370 3823437 D PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dia:Dtpsy_1070 histidine kinase internal region; signal transduction histidine kinase LytS 3822370..3823437 Variovorax paradoxus S110 7970687 YP_002945496.1 CDS Vapar_3613 NC_012791.1 3823434 3824279 D PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: vei:Veis_2282 response regulator receiver protein; LytTR family two component transcriptional regulator 3823434..3824279 Variovorax paradoxus S110 7970688 YP_002945497.1 CDS Vapar_3614 NC_012791.1 3824369 3824719 R KEGG: dia:Dtpsy_2105 hypothetical protein; hypothetical protein complement(3824369..3824719) Variovorax paradoxus S110 7970689 YP_002945498.1 CDS Vapar_3615 NC_012791.1 3824854 3826668 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3824854..3826668 Variovorax paradoxus S110 7970690 YP_002945499.1 CDS Vapar_3616 NC_012791.1 3826725 3826994 R hypothetical protein complement(3826725..3826994) Variovorax paradoxus S110 7970691 YP_002945500.1 CDS Vapar_3617 NC_012791.1 3827020 3827988 D PFAM: peptidase M23; KEGG: pna:Pnap_1342 peptidase M23B; peptidase M23 3827020..3827988 Variovorax paradoxus S110 7970692 YP_002945501.1 CDS Vapar_3618 NC_012791.1 3828021 3828311 D PFAM: DNA polymerase beta domain protein region; KEGG: pol:Bpro_5352 DNA polymerase, beta-like region; DNA polymerase beta domain-containing protein 3828021..3828311 Variovorax paradoxus S110 7970693 YP_002945502.1 CDS Vapar_3619 NC_012791.1 3828402 3829337 R PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: bav:BAV2950 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase complement(3828402..3829337) Variovorax paradoxus S110 7970694 YP_002945503.1 CDS Vapar_3620 NC_012791.1 3829460 3830440 R PFAM: beta-lactamase domain protein; KEGG: lch:Lcho_3845 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein complement(3829460..3830440) Variovorax paradoxus S110 7970695 YP_002945504.1 CDS Vapar_3621 NC_012791.1 3830513 3831715 R PFAM: Rh family protein/ammonium transporter; KEGG: pol:Bpro_4891 Rh-like protein/ammonium transporter; Rh family protein/ammonium transporter complement(3830513..3831715) Variovorax paradoxus S110 7970696 YP_002945505.1 CDS Vapar_3622 NC_012791.1 3831892 3832797 R PFAM: LytTr DNA-binding region; KEGG: xcb:XC_2338 regulatory protein; response regulator receiver protein complement(3831892..3832797) Variovorax paradoxus S110 7970697 YP_002945506.1 CDS Vapar_3623 NC_012791.1 3832928 3834169 D KEGG: xcb:XC_2341 inner membrane protein; inner membrane protein 3832928..3834169 Variovorax paradoxus S110 7970698 YP_002945507.1 CDS Vapar_3624 NC_012791.1 3834105 3834524 R PFAM: thioesterase superfamily protein; KEGG: rme:Rmet_4483 phenylacetic acid degradation-related protein; thioesterase superfamily protein complement(3834105..3834524) Variovorax paradoxus S110 7970699 YP_002945508.1 CDS Vapar_3625 NC_012791.1 3834745 3836373 D KEGG: aav:Aave_0431 hypothetical protein; hypothetical protein 3834745..3836373 Variovorax paradoxus S110 7970700 YP_002945509.1 CDS Vapar_3626 NC_012791.1 3836392 3836841 R PFAM: ferric-uptake regulator; KEGG: cti:RALTA_B0618 transcriptional regulator, Fur family; Fur family ferric uptake regulator complement(3836392..3836841) Variovorax paradoxus S110 7970701 YP_002945510.1 CDS Vapar_3627 NC_012791.1 3836873 3837382 R KEGG: hch:HCH_02935 hypothetical protein; hypothetical protein complement(3836873..3837382) Variovorax paradoxus S110 7970702 YP_002945511.1 CDS Vapar_3628 NC_012791.1 3837437 3838048 R PFAM: cyclic nucleotide-binding; KEGG: scl:sce4622 cAMP-binding protein; Crp/Fnr family transcriptional regulator complement(3837437..3838048) Variovorax paradoxus S110 7970703 YP_002945512.1 CDS Vapar_3629 NC_012791.1 3838045 3839007 R PFAM: GTP-binding protein HSR1-related; KEGG: rfr:Rfer_1388 GTP-binding; HSR1-like GTP-binding protein complement(3838045..3839007) Variovorax paradoxus S110 7970704 YP_002945513.1 CDS Vapar_3630 NC_012791.1 3839184 3839783 D KEGG: xac:XAC4267 hypothetical protein; hypothetical protein 3839184..3839783 Variovorax paradoxus S110 7970705 YP_002945514.1 CDS Vapar_3631 NC_012791.1 3839929 3840357 D PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: rfr:Rfer_0004 signal-transduction protein; signal transduction protein with CBS domains 3839929..3840357 Variovorax paradoxus S110 7970706 YP_002945515.1 CDS Vapar_3632 NC_012791.1 3840457 3840816 D KEGG: pol:Bpro_1902 ribosomal subunit interface protein; ribosomal subunit interface protein 3840457..3840816 Variovorax paradoxus S110 7970707 YP_002945516.1 CDS Vapar_3633 NC_012791.1 3840803 3841273 R PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rpi:Rpic_1968 MerR family transcriptional regulator; MerR family transcriptional regulator complement(3840803..3841273) Variovorax paradoxus S110 7970708 YP_002945517.1 CDS Vapar_3634 NC_012791.1 3841263 3841694 R PFAM: protein of unknown function DUF1486; KEGG: sal:Sala_1640 hypothetical protein; hypothetical protein complement(3841263..3841694) Variovorax paradoxus S110 7970709 YP_002945518.1 CDS Vapar_3635 NC_012791.1 3841798 3842721 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3841798..3842721) Variovorax paradoxus S110 7970710 YP_002945519.1 CDS Vapar_3636 NC_012791.1 3842828 3843208 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pna:Pnap_0923 response regulator receiver protein; response regulator receiver protein complement(3842828..3843208) Variovorax paradoxus S110 7970711 YP_002945520.1 CDS Vapar_3637 NC_012791.1 3843389 3844945 R KEGG: pol:Bpro_3399 glutamate-cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase; glutamate/cysteine ligase complement(3843389..3844945) Variovorax paradoxus S110 7970712 YP_002945521.1 CDS Vapar_3638 NC_012791.1 3845066 3845365 R PFAM: antibiotic biosynthesis monooxygenase; KEGG: sal:Sala_0828 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(3845066..3845365) Variovorax paradoxus S110 7970713 YP_002945522.1 CDS Vapar_3639 NC_012791.1 3845362 3846033 R PFAM: phospholipase/carboxylesterase; KEGG: pol:Bpro_3402 carboxylesterase; carboxylesterase complement(3845362..3846033) Variovorax paradoxus S110 7970714 YP_002945523.1 CDS Vapar_3640 NC_012791.1 3846144 3846611 D KEGG: cko:CKO_00930 hypothetical protein; hypothetical protein 3846144..3846611 Variovorax paradoxus S110 7970715 YP_002945524.1 CDS Vapar_3641 NC_012791.1 3846669 3847334 D PFAM: glutathione S-transferase domain; KEGG: dia:Dtpsy_1524 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein 3846669..3847334 Variovorax paradoxus S110 7970716 YP_002945525.1 CDS Vapar_3642 NC_012791.1 3847373 3848476 D KEGG: aav:Aave_0771 hypothetical protein; hypothetical protein 3847373..3848476 Variovorax paradoxus S110 7970717 YP_002945526.1 CDS Vapar_3643 NC_012791.1 3848492 3849289 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3848492..3849289) Variovorax paradoxus S110 7970718 YP_002945527.1 CDS Vapar_3644 NC_012791.1 3849350 3849775 R hypothetical protein complement(3849350..3849775) Variovorax paradoxus S110 7970719 YP_002945528.1 CDS Vapar_3645 NC_012791.1 3849849 3850121 R KEGG: pna:Pnap_4850 hypothetical protein; hypothetical protein complement(3849849..3850121) Variovorax paradoxus S110 7970720 YP_002945529.1 CDS Vapar_3646 NC_012791.1 3850221 3851417 D KEGG: met:M446_5908 hypothetical protein; hypothetical protein 3850221..3851417 Variovorax paradoxus S110 7973879 YP_002945530.1 CDS Vapar_3647 NC_012791.1 3851447 3851650 D KEGG: dac:Daci_2473 hypothetical protein; hypothetical protein 3851447..3851650 Variovorax paradoxus S110 7973880 YP_002945531.1 CDS Vapar_3648 NC_012791.1 3851684 3852592 R PFAM: protein of unknown function DUF808; KEGG: ppf:Pput_1575 hypothetical protein; hypothetical protein complement(3851684..3852592) Variovorax paradoxus S110 7973881 YP_002945532.1 CDS Vapar_3649 NC_012791.1 3852698 3853186 R PFAM: GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_2546 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferaser complement(3852698..3853186) Variovorax paradoxus S110 7973882 YP_002945533.1 CDS Vapar_3650 NC_012791.1 3853310 3853459 D hypothetical protein 3853310..3853459 Variovorax paradoxus S110 7973883 YP_002945534.1 CDS Vapar_3651 NC_012791.1 3853456 3853758 D KEGG: pol:Bpro_3456 hypothetical protein; hypothetical protein 3853456..3853758 Variovorax paradoxus S110 7973884 YP_002945535.1 CDS Vapar_3652 NC_012791.1 3853755 3854036 D PFAM: ferredoxin; KEGG: bpe:BP1195 ferredoxin; ferredoxin 3853755..3854036 Variovorax paradoxus S110 7973885 YP_002945536.1 CDS Vapar_3653 NC_012791.1 3854055 3855248 R PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: pna:Pnap_1281 major facilitator superfamily transporter; major facilitator superfamily protein complement(3854055..3855248) Variovorax paradoxus S110 7973886 YP_002945537.1 CDS Vapar_3654 NC_012791.1 3855425 3856102 D PFAM: pseudouridine synthase; KEGG: mca:MCA1592 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 3855425..3856102 Variovorax paradoxus S110 7973887 YP_002945538.1 CDS Vapar_3655 NC_012791.1 3856086 3856529 R PFAM: UspA domain protein; KEGG: dia:Dtpsy_1732 UspA domain protein; UspA domain-containing protein complement(3856086..3856529) Variovorax paradoxus S110 7973888 YP_002945539.1 CDS Vapar_3656 NC_012791.1 3856637 3857389 R KEGG: dia:Dtpsy_1731 hypothetical protein; hypothetical protein complement(3856637..3857389) Variovorax paradoxus S110 7973889 YP_002945540.1 CDS Vapar_3657 NC_012791.1 3857386 3857670 R PFAM: protein of unknown function DUF427; KEGG: pna:Pnap_1271 hypothetical protein; hypothetical protein complement(3857386..3857670) Variovorax paradoxus S110 7973890 YP_002945541.1 CDS Vapar_3658 NC_012791.1 3857931 3859082 R PFAM: Integrase catalytic region; KEGG: bxe:Bxe_A0541 transposase integrase; integrase catalytic subunit complement(3857931..3859082) Variovorax paradoxus S110 7973891 YP_002945542.1 CDS Vapar_3659 NC_012791.1 3859226 3860245 R TIGRFAM: methyltransferase; KEGG: mpt:Mpe_A1380 hypothetical protein; methyltransferase complement(3859226..3860245) Variovorax paradoxus S110 7973892 YP_002945543.1 CDS Vapar_3660 NC_012791.1 3860249 3861505 R PFAM: protein of unknown function DUF323; KEGG: bam:Bamb_0015 hypothetical protein; hypothetical protein complement(3860249..3861505) Variovorax paradoxus S110 7973893 YP_002945544.1 CDS Vapar_3661 NC_012791.1 3861685 3863031 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: mpt:Mpe_A2216 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3861685..3863031 Variovorax paradoxus S110 7973894 YP_002945545.1 CDS Vapar_3662 NC_012791.1 3863034 3863561 R PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: dia:Dtpsy_1359 nuclease (SNase domain protein); nuclease complement(3863034..3863561) Variovorax paradoxus S110 7973895 YP_002945546.1 CDS Vapar_3663 NC_012791.1 3863638 3865335 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(3863638..3865335) Variovorax paradoxus S110 7973896 YP_002945547.1 CDS Vapar_3664 NC_012791.1 3865571 3866011 D PFAM: OsmC family protein; KEGG: aav:Aave_0009 OsmC family protein; peroxiredoxin 3865571..3866011 Variovorax paradoxus S110 7973897 YP_002945548.1 CDS Vapar_3665 NC_012791.1 3866059 3867039 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3470 uncharacterized protein UPF0065; hypothetical protein 3866059..3867039 Variovorax paradoxus S110 7973898 YP_002945549.1 CDS Vapar_3666 NC_012791.1 3867451 3868233 D PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_3471 transcriptional regulator, GntR family; GntR family transcriptional regulator 3867451..3868233 Variovorax paradoxus S110 7973899 YP_002945550.1 CDS Vapar_3667 NC_012791.1 3868230 3869030 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: pol:Bpro_3472 extracellular solute-binding protein, family 3; family 3 extracellular solute-binding protein 3868230..3869030 Variovorax paradoxus S110 7973900 YP_002945551.1 CDS Vapar_3668 NC_012791.1 3869066 3869722 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3473 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane protein 3869066..3869722 Variovorax paradoxus S110 7973901 YP_002945552.1 CDS Vapar_3669 NC_012791.1 3869741 3870394 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3474 amino acid ABC transporter permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane protein 3869741..3870394 Variovorax paradoxus S110 7973902 YP_002945553.1 CDS Vapar_3670 NC_012791.1 3870378 3871145 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: lch:Lcho_3208 ABC transporter-related protein; ABC transporter 3870378..3871145 Variovorax paradoxus S110 7973903 YP_002945554.1 CDS Vapar_3671 NC_012791.1 3871166 3872131 R PFAM: protein of unknown function DUF72; KEGG: pfl:PFL_4743 hypothetical protein; hypothetical protein complement(3871166..3872131) Variovorax paradoxus S110 7973904 YP_002945555.1 CDS Vapar_3672 NC_012791.1 3872287 3872874 D KEGG: reu:Reut_B5249 transmembrane protein; transmembrane protein 3872287..3872874 Variovorax paradoxus S110 7973905 YP_002945556.1 CDS Vapar_3673 NC_012791.1 3872871 3873863 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rfr:Rfer_1116 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3872871..3873863 Variovorax paradoxus S110 7973906 YP_002945557.1 CDS Vapar_3674 NC_012791.1 3873860 3874138 D KEGG: dia:Dtpsy_3263 hypothetical protein; hypothetical protein 3873860..3874138 Variovorax paradoxus S110 7973907 YP_002945558.1 CDS Vapar_3675 NC_012791.1 3874152 3874619 D PFAM: protein of unknown function DUF411; KEGG: pna:Pnap_1259 hypothetical protein; hypothetical protein 3874152..3874619 Variovorax paradoxus S110 7973908 YP_002945559.1 CDS Vapar_3676 NC_012791.1 3874638 3875936 R PFAM: FAD dependent oxidoreductase; KEGG: bja:bll6812 dehydrogenase; D-amino-acid dehydrogenase complement(3874638..3875936) Variovorax paradoxus S110 7973909 YP_002945560.1 CDS Vapar_3677 NC_012791.1 3875977 3877029 D PFAM: peptidase S58 DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA; peptidase S58 DmpA 3875977..3877029 Variovorax paradoxus S110 7973910 YP_002945561.1 CDS Vapar_3678 NC_012791.1 3877037 3878431 D TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: aav:Aave_1803 TRAP transporter solute receptor TAXI family protein; TRAP transporter solute receptor, TAXI family 3877037..3878431 Variovorax paradoxus S110 7973911 YP_002945562.1 CDS Vapar_3680 NC_012791.1 3878875 3879333 D PFAM: carboxymuconolactone decarboxylase; KEGG: azo:azo3958 4-carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 3878875..3879333 Variovorax paradoxus S110 7973913 YP_002945563.1 CDS Vapar_3681 NC_012791.1 3879337 3880998 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(3879337..3880998) Variovorax paradoxus S110 7973914 YP_002945564.1 CDS Vapar_3682 NC_012791.1 3881298 3883103 D PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: aav:Aave_1798 DEAD/DEAH box helicase domain-containing protein; DEAD/DEAH box helicase domain-containing protein 3881298..3883103 Variovorax paradoxus S110 7973915 YP_002945565.1 CDS Vapar_3683 NC_012791.1 3883232 3884272 D PFAM: endonuclease/exonuclease/phosphatase; KEGG: par:Psyc_1330 endonuclease/exonuclease/phosphatase family protein; endonuclease/exonuclease/phosphatase 3883232..3884272 Variovorax paradoxus S110 7973916 YP_002945566.1 CDS Vapar_3684 NC_012791.1 3884282 3885349 R PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: vei:Veis_1240 ABC transporter; ABC transporter complement(3884282..3885349) Variovorax paradoxus S110 7973917 YP_002945567.1 CDS Vapar_3685 NC_012791.1 3885369 3886220 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1241 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(3885369..3886220) Variovorax paradoxus S110 7973918 YP_002945568.1 CDS Vapar_3686 NC_012791.1 3886303 3887178 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1242 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(3886303..3887178) Variovorax paradoxus S110 7973919 YP_002945569.1 CDS Vapar_3687 NC_012791.1 3887216 3888601 R PFAM: extracellular solute-binding protein family 1; KEGG: vei:Veis_1243 extracellular solute-binding protein; family 1 extracellular solute-binding protein complement(3887216..3888601) Variovorax paradoxus S110 7973920 YP_002945570.1 CDS Vapar_3688 NC_012791.1 3888703 3889449 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_3530 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3888703..3889449) Variovorax paradoxus S110 7973921 YP_002945571.1 CDS Vapar_3689 NC_012791.1 3889601 3891337 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 3889601..3891337 Variovorax paradoxus S110 7973922 YP_002945572.1 CDS Vapar_3690 NC_012791.1 3891339 3892247 D PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: pol:Bpro_3534 2-keto-3-deoxygalactonate kinase; 2-dehydro-3-deoxygalactonokinase 3891339..3892247 Variovorax paradoxus S110 7973923 YP_002945573.1 CDS Vapar_3691 NC_012791.1 3892244 3892885 D PFAM: KDPG and KHG aldolase; KEGG: pol:Bpro_3535 2-keto-3-deoxy-phosphogalactonate aldolase; KDPG and KHG aldolase 3892244..3892885 Variovorax paradoxus S110 7973924 YP_002945574.1 CDS Vapar_3692 NC_012791.1 3892978 3893661 D PFAM: class II aldolase/adducin family protein; KEGG: mpt:Mpe_A1036 hypothetical protein; hypothetical protein 3892978..3893661 Variovorax paradoxus S110 7973925 YP_002945575.1 CDS Vapar_3693 NC_012791.1 3893821 3894144 D KEGG: aav:Aave_4502 signal peptide protein; signal peptide protein 3893821..3894144 Variovorax paradoxus S110 7973926 YP_002945576.1 CDS Vapar_3694 NC_012791.1 3894173 3895591 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pol:Bpro_3542 MATE efflux family protein; MATE efflux family protein complement(3894173..3895591) Variovorax paradoxus S110 7973927 YP_002945577.1 CDS Vapar_3695 NC_012791.1 3895605 3896918 R PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_1902 major facilitator transporter; major facilitator superfamily protein complement(3895605..3896918) Variovorax paradoxus S110 7973928 YP_002945578.1 CDS Vapar_3696 NC_012791.1 3897008 3897463 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pol:Bpro_3545 MarR family transcriptional regulator; MarR family transcriptional regulator complement(3897008..3897463) Variovorax paradoxus S110 7973929 YP_002945579.1 CDS Vapar_3697 NC_012791.1 3897538 3898086 D PFAM: thioesterase superfamily protein; KEGG: bpy:Bphyt_5993 thioesterase superfamily protein; thioesterase superfamily protein 3897538..3898086 Variovorax paradoxus S110 7973930 YP_002945580.1 CDS Vapar_3698 NC_012791.1 3898107 3898802 D PFAM: nitroreductase; KEGG: rme:Rmet_5533 nitroreductase; nitroreductase 3898107..3898802 Variovorax paradoxus S110 7973931 YP_002945581.1 CDS Vapar_3699 NC_012791.1 3898920 3899984 D PFAM: extracellular solute-binding protein family 1; KEGG: bmj:BMULJ_01151 iron(III) transport system substrate-binding protein; family 1 extracellular solute-binding protein 3898920..3899984 Variovorax paradoxus S110 7973932 YP_002945582.1 CDS Vapar_3700 NC_012791.1 3900028 3901680 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_A4317 ABC spermidine/putrescine transporter inner membrane subunit; binding-protein-dependent transport systems inner membrane component 3900028..3901680 Variovorax paradoxus S110 7973933 YP_002945583.1 CDS Vapar_3701 NC_012791.1 3901677 3902363 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bmj:BMULJ_01149 iron(III) transport system ATP-binding protein; ABC transporter 3901677..3902363 Variovorax paradoxus S110 7973934 YP_002945584.1 CDS Vapar_3702 NC_012791.1 3902466 3903146 D PFAM: glutathione S-transferase domain; KEGG: sme:SMc00383 glutathione S-transferase protein; glutathione S-transferase domain-containing protein 3902466..3903146 Variovorax paradoxus S110 7973935 YP_002945585.1 CDS Vapar_3703 NC_012791.1 3903194 3903634 D KEGG: dac:Daci_3939 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 3903194..3903634 Variovorax paradoxus S110 7973936 YP_002945586.1 CDS Vapar_3704 NC_012791.1 3903913 3905070 D KEGG: pfo:Pfl01_3839 hypothetical protein; hypothetical protein 3903913..3905070 Variovorax paradoxus S110 7973937 YP_002945587.1 CDS Vapar_3705 NC_012791.1 3905067 3906128 D PFAM: acyltransferase 3; KEGG: bxe:Bxe_B1653 exopolysaccharide production protein ExoZ; acyltransferase 3 3905067..3906128 Variovorax paradoxus S110 7973938 YP_002945588.1 CDS Vapar_3706 NC_012791.1 3906156 3906884 R TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dia:Dtpsy_1029 haloacid dehalogenase, type II; haloacid dehalogenase, type II complement(3906156..3906884) Variovorax paradoxus S110 7973939 YP_002945589.1 CDS Vapar_3707 NC_012791.1 3906892 3907527 R KEGG: ajs:Ajs_2048 2-keto-3-deoxy-phosphogluconate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase complement(3906892..3907527) Variovorax paradoxus S110 7973940 YP_002945590.1 CDS Vapar_3708 NC_012791.1 3907544 3909370 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(3907544..3909370) Variovorax paradoxus S110 7973941 YP_002945591.1 CDS Vapar_3709 NC_012791.1 3909526 3910077 R PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_1878 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(3909526..3910077) Variovorax paradoxus S110 7973942 YP_002945592.1 CDS Vapar_3710 NC_012791.1 3910204 3910932 D PFAM: ChaC family protein; KEGG: dia:Dtpsy_1879 ChaC family protein; ChaC family protein 3910204..3910932 Variovorax paradoxus S110 7973943 YP_002945593.1 CDS Vapar_3711 NC_012791.1 3910929 3911471 D PFAM: superoxide dismutase copper/zinc binding; KEGG: pol:Bpro_3554 superoxide dismutase; superoxide dismutase copper/zinc binding 3910929..3911471 Variovorax paradoxus S110 7973944 YP_002945594.1 CDS Vapar_3712 NC_012791.1 3911476 3912042 R KEGG: dac:Daci_3943 hypothetical protein; hypothetical protein complement(3911476..3912042) Variovorax paradoxus S110 7973945 YP_002945595.1 CDS Vapar_3713 NC_012791.1 3912093 3912773 D KEGG: aav:Aave_2803 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase 3912093..3912773 Variovorax paradoxus S110 7973946 YP_002945596.1 CDS Vapar_3714 NC_012791.1 3912780 3913985 R PFAM: OmpA/MotB domain protein; KEGG: azo:azo3773 hypothetical protein; OmpA/MotB domain-containing protein complement(3912780..3913985) Variovorax paradoxus S110 7973947 YP_002945597.1 CDS Vapar_3715 NC_012791.1 3914010 3914378 D KEGG: hypothetical protein; hypothetical protein 3914010..3914378 Variovorax paradoxus S110 7973948 YP_002945598.1 CDS Vapar_3716 NC_012791.1 3914475 3915425 R PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_1684 auxin efflux carrier; auxin efflux carrier complement(3914475..3915425) Variovorax paradoxus S110 7973949 YP_002945599.1 CDS Vapar_3717 NC_012791.1 3915472 3917580 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_2807 TonB-dependent receptor; TonB-dependent receptor complement(3915472..3917580) Variovorax paradoxus S110 7973950 YP_002945600.1 CDS Vapar_3718 NC_012791.1 3917658 3918062 R KEGG: pol:Bpro_1682 hypothetical protein; hypothetical protein complement(3917658..3918062) Variovorax paradoxus S110 7973951 YP_002945601.1 CDS Vapar_3719 NC_012791.1 3918089 3918640 R KEGG: pna:Pnap_1135 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; peptide methionine sulfoxide reductase complement(3918089..3918640) Variovorax paradoxus S110 7973952 YP_002945602.1 CDS Vapar_3720 NC_012791.1 3918741 3919418 D PFAM: regulatory protein TetR; KEGG: pol:Bpro_1669 TetR family transcriptional regulator; TetR family transcriptional regulator 3918741..3919418 Variovorax paradoxus S110 7973953 YP_002945603.1 CDS Vapar_3721 NC_012791.1 3919509 3920186 D PFAM: methyltransferase type 11; methyltransferase type 12; protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: rfr:Rfer_2602 protein-L-isoaspartate(D-aspartate) O-methyltransferase; type 11 methyltransferase 3919509..3920186 Variovorax paradoxus S110 7973954 YP_002945604.1 CDS Vapar_3722 NC_012791.1 3920201 3920539 D SMART: rhodanese domainprotein; KEGG: dia:Dtpsy_1836 rhodanese domain protein; rhodanese domain-containing protein 3920201..3920539 Variovorax paradoxus S110 7973955 YP_002945605.1 CDS Vapar_3723 NC_012791.1 3920561 3922099 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 3920561..3922099 Variovorax paradoxus S110 7973956 YP_002945606.1 CDS Vapar_3724 NC_012791.1 3922115 3923491 R PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dia:Dtpsy_1831 three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein complement(3922115..3923491) Variovorax paradoxus S110 7973957 YP_002945607.1 CDS Vapar_3725 NC_012791.1 3923497 3924879 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: pol:Bpro_1639 phosphomannomutase; phosphomannomutase complement(3923497..3924879) Variovorax paradoxus S110 7973958 YP_002945608.1 CDS Vapar_3726 NC_012791.1 3924992 3926596 D PFAM: AlkA domain protein; Ada metal-binding domain protein; HhH-GPD family protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; KEGG: pen:PSEEN2569 DNA-3-methyladenine glycosylase II; AraC family transcriptional regulator 3924992..3926596 Variovorax paradoxus S110 7973959 YP_002945609.1 CDS Vapar_3727 NC_012791.1 3926603 3927097 D KEGG: pol:Bpro_1637 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; methylated-DNA/protein-cysteine methyltransferase 3926603..3927097 Variovorax paradoxus S110 7970884 YP_002945610.1 CDS Vapar_3728 NC_012791.1 3927133 3928107 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_1636 protein of unknown function DUF6, transmembrane; hypothetical protein 3927133..3928107 Variovorax paradoxus S110 7970885 YP_002945611.1 CDS Vapar_3729 NC_012791.1 3928082 3928735 R PFAM: protein of unknown function DUF1345; KEGG: pna:Pnap_1098 hypothetical protein; hypothetical protein complement(3928082..3928735) Variovorax paradoxus S110 7970886 YP_002945612.1 CDS Vapar_3730 NC_012791.1 3928957 3929796 D KEGG: xac:XAC3657 hypothetical protein; hypothetical protein 3928957..3929796 Variovorax paradoxus S110 7970887 YP_002945613.1 CDS Vapar_3731 NC_012791.1 3929895 3930785 D KEGG: mpt:Mpe_A2194 ABC-type phosphate/phosphonate transport system periplasmic component-like protein; ABC-type phosphate/phosphonate transport system periplasmic component-like protein 3929895..3930785 Variovorax paradoxus S110 7970888 YP_002945614.1 CDS Vapar_3732 NC_012791.1 3930832 3931536 D PFAM: glutathione S-transferase domain; KEGG: bcm:Bcenmc03_1655 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein 3930832..3931536 Variovorax paradoxus S110 7970889 YP_002945615.1 CDS Vapar_3733 NC_012791.1 3931777 3932400 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: dac:Daci_4750 ECF subfamily RNA polymerase sigma-24 factor; ECF subfamily RNA polymerase sigma-24 subunit 3931777..3932400 Variovorax paradoxus S110 7970890 YP_002945616.1 CDS Vapar_3734 NC_012791.1 3932416 3932634 D KEGG: dac:Daci_4751 anti-FecI sigma factor, FecR; anti-FecI sigma factor FecR 3932416..3932634 Variovorax paradoxus S110 7970891 YP_002945617.1 CDS Vapar_3735 NC_012791.1 3932645 3932881 R hypothetical protein complement(3932645..3932881) Variovorax paradoxus S110 7970892 YP_002945618.1 CDS Vapar_3736 NC_012791.1 3932878 3934569 R KEGG: aav:Aave_3724 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter; SMART: ATPase AAA; cyclic peptide transporter complement(3932878..3934569) Variovorax paradoxus S110 7970893 YP_002945619.1 CDS Vapar_3737 NC_012791.1 3934702 3935547 D PFAM: ferric iron reductase; KEGG: aav:Aave_3725 ferric iron reductase protein FhuF; ferric iron reductase 3934702..3935547 Variovorax paradoxus S110 7970894 YP_002945620.1 CDS Vapar_3738 NC_012791.1 3935645 3936490 D KEGG: aav:Aave_3726 hypothetical protein; hypothetical protein 3935645..3936490 Variovorax paradoxus S110 7970895 YP_002945621.1 CDS Vapar_3739 NC_012791.1 3936487 3937521 D KEGG: aav:Aave_3727 hypothetical protein; hypothetical protein 3936487..3937521 Variovorax paradoxus S110 7970896 YP_002945622.1 CDS Vapar_3740 NC_012791.1 3937565 3938884 D KEGG: dac:Daci_4749 L-lysine 6-monooxygenase (NADPH); L-lysine 6-monooxygenase (NADPH) 3937565..3938884 Variovorax paradoxus S110 7970897 YP_002945623.1 CDS Vapar_3741 NC_012791.1 3939045 3941216 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: aav:Aave_3728 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 3939045..3941216 Variovorax paradoxus S110 7970898 YP_002945624.1 CDS Vapar_3742 NC_012791.1 3941204 3945280 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: aav:Aave_3729 amino acid adenylation domain-containing protein; amino acid adenylation domain-containing protein complement(3941204..3945280) Variovorax paradoxus S110 7970899 YP_002945625.1 CDS Vapar_3743 NC_012791.1 3945277 3953157 R TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: aav:Aave_3730 amino acid adenylation domain-containing protein; amino acid adenylation domain-containing protein complement(3945277..3953157) Variovorax paradoxus S110 7970900 YP_002945626.1 CDS Vapar_3744 NC_012791.1 3953157 3956489 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: aav:Aave_3731 amino acid adenylation domain-containing protein; amino acid adenylation domain-containing protein complement(3953157..3956489) Variovorax paradoxus S110 7970901 YP_002945627.1 CDS Vapar_3745 NC_012791.1 3956486 3961048 R PFAM: KR domain protein; beta-ketoacyl synthase ; acyl transferase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: aav:Aave_3732 beta-ketoacyl synthase; KR domain-containing protein complement(3956486..3961048) Variovorax paradoxus S110 7970902 YP_002945628.1 CDS Vapar_3746 NC_012791.1 3961048 3966378 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: aav:Aave_3733 amino acid adenylation domain-containing protein; amino acid adenylation domain-containing protein complement(3961048..3966378) Variovorax paradoxus S110 7970903 YP_002945629.1 CDS Vapar_3747 NC_012791.1 3966399 3967391 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: dac:Daci_4757 taurine catabolism dioxygenase TauD/TfdA; Taurine catabolism dioxygenase TauD/TfdA complement(3966399..3967391) Variovorax paradoxus S110 7970904 YP_002945630.1 CDS Vapar_3748 NC_012791.1 3967388 3968077 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: dac:Daci_4758 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase complement(3967388..3968077) Variovorax paradoxus S110 7970905 YP_002945631.1 CDS Vapar_3749 NC_012791.1 3968055 3968795 R PFAM: Thioesterase; KEGG: dac:Daci_4759 thioesterase; Thioesterase complement(3968055..3968795) Variovorax paradoxus S110 7970906 YP_002945632.1 CDS Vapar_3750 NC_012791.1 3968801 3969058 R PFAM: MbtH domain protein; KEGG: aav:Aave_3736 MbtH domain-containing protein; MbtH domain-containing protein complement(3968801..3969058) Variovorax paradoxus S110 7970907 YP_002945633.1 CDS Vapar_3751 NC_012791.1 3969160 3969363 R KEGG: ppw:PputW619_4312 anti-FecI sigma factor, FecR; anti-FecI sigma factor FecR complement(3969160..3969363) Variovorax paradoxus S110 7970908 YP_002945634.1 CDS Vapar_3752 NC_012791.1 3969460 3970005 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: aav:Aave_3737 ECF subfamily RNA polymerase sigma-24 factor; ECF subfamily RNA polymerase sigma-24 subunit complement(3969460..3970005) Variovorax paradoxus S110 7970909 YP_002945635.1 CDS Vapar_3753 NC_012791.1 3970310 3971176 D KEGG: aav:Aave_3997 hypothetical protein; hypothetical protein 3970310..3971176 Variovorax paradoxus S110 7970910 YP_002945636.1 CDS Vapar_3754 NC_012791.1 3971157 3971741 R KEGG: dac:Daci_2123 lipoprotein; lipoprotein complement(3971157..3971741) Variovorax paradoxus S110 7970911 YP_002945637.1 CDS Vapar_3755 NC_012791.1 3972036 3973331 D TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: hypothetical protein; acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase 3972036..3973331 Variovorax paradoxus S110 7970912 YP_002945638.1 CDS Vapar_3756 NC_012791.1 3973450 3974691 D PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: bcm:Bcenmc03_4524 phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase 3973450..3974691 Variovorax paradoxus S110 7970913 YP_002945639.1 CDS Vapar_3757 NC_012791.1 3975177 3976565 R TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: rfr:Rfer_2681 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase complement(3975177..3976565) Variovorax paradoxus S110 7970917 YP_002945640.1 CDS Vapar_3758 NC_012791.1 3976573 3977793 R KEGG: pna:Pnap_1093 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-succinylhomoserine sulfhydrylase complement(3976573..3977793) Variovorax paradoxus S110 7970918 YP_002945641.1 CDS Vapar_3759 NC_012791.1 3977805 3979307 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(3977805..3979307) Variovorax paradoxus S110 7970919 YP_002945642.1 CDS Vapar_3760 NC_012791.1 3979320 3979805 R PFAM: colicin V production protein; KEGG: vei:Veis_3372 colicin V production protein; colicin V production protein complement(3979320..3979805) Variovorax paradoxus S110 7970920 YP_002945643.1 CDS Vapar_3761 NC_012791.1 3979824 3980696 R PFAM: sporulation domain protein; KEGG: dia:Dtpsy_2228 sporulation domain protein; sporulation domain-containing protein complement(3979824..3980696) Variovorax paradoxus S110 7970921 YP_002945644.1 CDS Vapar_3762 NC_012791.1 3980759 3982066 R TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dia:Dtpsy_2229 FolC bifunctional protein; FolC bifunctional protein complement(3980759..3982066) Variovorax paradoxus S110 7970922 YP_002945645.1 CDS Vapar_3763 NC_012791.1 3982124 3982498 D PFAM: arsenate reductase and related; KEGG: pna:Pnap_1087 arsenate reductase and related; arsenate reductase-like protein 3982124..3982498 Variovorax paradoxus S110 7970923 YP_002945646.1 CDS Vapar_3764 NC_012791.1 3982556 3983164 D KEGG: pna:Pnap_1086 17 kDa surface antigen; hypothetical protein 3982556..3983164 Variovorax paradoxus S110 7970924 YP_002945647.1 CDS Vapar_3765 NC_012791.1 3983300 3983626 D PFAM: protein of unknown function DUF1255; KEGG: eba:ebD86 hypothetical protein; hypothetical protein 3983300..3983626 Variovorax paradoxus S110 7970925 YP_002945648.1 CDS Vapar_3766 NC_012791.1 3983784 3985124 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3983784..3985124 Variovorax paradoxus S110 7970926 YP_002945649.1 CDS Vapar_3767 NC_012791.1 3985210 3986049 R KEGG: pol:Bpro_1598 hypothetical protein; hypothetical protein complement(3985210..3986049) Variovorax paradoxus S110 7970927 YP_002945650.1 CDS Vapar_3768 NC_012791.1 3986054 3987106 R KEGG: aav:Aave_1855 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase complement(3986054..3987106) Variovorax paradoxus S110 7970928 YP_002945651.1 CDS Vapar_3769 NC_012791.1 3987150 3987635 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 3987150..3987635 Variovorax paradoxus S110 7970929 YP_002945652.1 CDS Vapar_3770 NC_012791.1 3987643 3988284 D KEGG: pna:Pnap_1079 hypothetical protein; hypothetical protein 3987643..3988284 Variovorax paradoxus S110 7970930 YP_002945653.1 CDS Vapar_3771 NC_012791.1 3988294 3988647 R PFAM: endoribonuclease L-PSP; KEGG: bpd:BURPS668_1708 endoribonuclease L-PSP; endoribonuclease L-PSP complement(3988294..3988647) Variovorax paradoxus S110 7970931 YP_002945654.1 CDS Vapar_3772 NC_012791.1 3988656 3989291 R PFAM: protein of unknown function DUF205; KEGG: aav:Aave_1851 acyl-phosphate glycerol-3-phosphate acyltransferase; hypothetical protein complement(3988656..3989291) Variovorax paradoxus S110 7970932 YP_002945655.1 CDS Vapar_3773 NC_012791.1 3989340 3989831 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pna:Pnap_1077 YbaK/EbsC protein; ybaK/ebsC protein complement(3989340..3989831) Variovorax paradoxus S110 7970933 YP_002945656.1 CDS Vapar_3774 NC_012791.1 3989905 3990966 R PFAM: aldo/keto reductase; KEGG: pol:Bpro_1592 aldo/keto reductase; aldo/keto reductase complement(3989905..3990966) Variovorax paradoxus S110 7970934 YP_002945657.1 CDS Vapar_3775 NC_012791.1 3991082 3992011 D PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_2699 alpha/beta hydrolase; alpha/beta hydrolase fold protein 3991082..3992011 Variovorax paradoxus S110 7970935 YP_002945658.1 CDS Vapar_3776 NC_012791.1 3992025 3992717 R TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: pol:Bpro_4755 aspartate racemase; aspartate racemase complement(3992025..3992717) Variovorax paradoxus S110 7970936 YP_002945659.1 CDS Vapar_3777 NC_012791.1 3992829 3992948 D hypothetical protein 3992829..3992948 Variovorax paradoxus S110 7970937 YP_002945660.1 CDS Vapar_3778 NC_012791.1 3992966 3995356 D TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: bbr:BB0793 hypothetical protein; type VI secretion system Vgr family protein 3992966..3995356 Variovorax paradoxus S110 7970938 YP_002945661.1 CDS Vapar_3779 NC_012791.1 3995370 3995834 D KEGG: mca:MCA2764 lipoprotein; hypothetical protein 3995370..3995834 Variovorax paradoxus S110 7970939 YP_002945662.1 CDS Vapar_3780 NC_012791.1 3995831 3998431 D PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein; pentapeptide repeat-containing protein 3995831..3998431 Variovorax paradoxus S110 7970940 YP_002945663.1 CDS Vapar_3781 NC_012791.1 3998428 3999477 D PFAM: pentapeptide repeat protein; KEGG: bbr:BB0796 hypothetical protein; pentapeptide repeat-containing protein 3998428..3999477 Variovorax paradoxus S110 7970941 YP_002945664.1 CDS Vapar_3782 NC_012791.1 3999539 4000177 D KEGG: bpt:Bpet4111 hypothetical protein; hypothetical protein 3999539..4000177 Variovorax paradoxus S110 7970942 YP_002945665.1 CDS Vapar_3783 NC_012791.1 4000206 4000598 D KEGG: spe:Spro_4188 hypothetical protein; hypothetical protein 4000206..4000598 Variovorax paradoxus S110 7970943 YP_002945666.1 CDS Vapar_3785 NC_012791.1 4001288 4001644 R hypothetical protein complement(4001288..4001644) Variovorax paradoxus S110 7970945 YP_002945667.1 CDS Vapar_3786 NC_012791.1 4001671 4002492 R PFAM: NLPA lipoprotein; KEGG: dac:Daci_4596 NlpA lipoprotein; NLPA lipoprotein complement(4001671..4002492) Variovorax paradoxus S110 7970946 YP_002945668.1 CDS Vapar_3787 NC_012791.1 4002529 4003191 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_4597 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(4002529..4003191) Variovorax paradoxus S110 7970947 YP_002945669.1 CDS Vapar_3788 NC_012791.1 4003184 4004056 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dac:Daci_4598 ABC transporter; ABC transporter complement(4003184..4004056) Variovorax paradoxus S110 7970948 YP_002945670.1 CDS Vapar_3789 NC_012791.1 4004298 4005122 D TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rso:RSc3386 outermembrane signal peptide protein; lipoprotein, YaeC family 4004298..4005122 Variovorax paradoxus S110 7970949 YP_002945671.1 CDS Vapar_3790 NC_012791.1 4005327 4006535 D PFAM: filamentation induced by cAMP protein Fic; KEGG: pna:Pnap_4423 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic 4005327..4006535 Variovorax paradoxus S110 7970950 YP_002945672.1 CDS Vapar_3791 NC_012791.1 4006672 4007776 D KEGG: bpm:BURPS1710b_3602 hypothetical protein; hypothetical protein join(4006672..4006752,4006754..4007776) Variovorax paradoxus S110 7970951 YP_002945673.1 CDS Vapar_3792 NC_012791.1 4007780 4008469 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: rfr:Rfer_2702 HAD family hydrolase; HAD superfamily hydrolase 4007780..4008469 Variovorax paradoxus S110 7970952 YP_002945674.1 CDS pepN NC_012791.1 4008453 4011167 D TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: pol:Bpro_1587 peptidase M1, alanyl aminopeptidase; aminopeptidase N 4008453..4011167 Variovorax paradoxus S110 7970953 YP_002945675.1 CDS Vapar_3794 NC_012791.1 4011202 4011990 D hypothetical protein 4011202..4011990 Variovorax paradoxus S110 7970954 YP_002945676.1 CDS Vapar_3795 NC_012791.1 4012043 4013056 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 4012043..4013056 Variovorax paradoxus S110 7970955 YP_002945677.1 CDS Vapar_3796 NC_012791.1 4013203 4013463 R hypothetical protein complement(4013203..4013463) Variovorax paradoxus S110 7970957 YP_002945678.1 CDS Vapar_3797 NC_012791.1 4013484 4013747 R KEGG: bps:BPSL2574 hypothetical protein; hypothetical protein complement(4013484..4013747) Variovorax paradoxus S110 7970958 YP_002945679.1 CDS Vapar_3798 NC_012791.1 4013806 4014609 R hypothetical protein complement(4013806..4014609) Variovorax paradoxus S110 7970959 YP_002945680.1 CDS Vapar_3800 NC_012791.1 4015187 4015531 R KEGG: lch:Lcho_2196 hypothetical protein; hypothetical protein complement(4015187..4015531) Variovorax paradoxus S110 7970961 YP_002945681.1 CDS Vapar_3801 NC_012791.1 4015528 4015743 R KEGG: ajs:Ajs_3336 hypothetical protein; hypothetical protein complement(4015528..4015743) Variovorax paradoxus S110 7970962 YP_002945682.1 CDS Vapar_3802 NC_012791.1 4016198 4016983 D hypothetical protein 4016198..4016983 Variovorax paradoxus S110 7970963 YP_002945683.1 CDS Vapar_3803 NC_012791.1 4017019 4017621 R PFAM: PilT protein domain protein; KEGG: bxe:Bxe_A0368 nucleic acid-binding protein; PilT protein domain-containing protein complement(4017019..4017621) Variovorax paradoxus S110 7970964 YP_002945684.1 CDS Vapar_3804 NC_012791.1 4017621 4018364 R KEGG: bxe:Bxe_A0367 hypothetical protein; hypothetical protein complement(4017621..4018364) Variovorax paradoxus S110 7969661 YP_002945685.1 CDS Vapar_3805 NC_012791.1 4018602 4019954 R PFAM: integrase family protein; KEGG: pol:Bpro_1526 phage integrase; integrase family protein complement(4018602..4019954) Variovorax paradoxus S110 7969662 YP_002945686.1 CDS Vapar_3806 NC_012791.1 4020253 4020753 D KEGG: aav:Aave_2661 hypothetical protein; hypothetical protein 4020253..4020753 Variovorax paradoxus S110 7969663 YP_002945687.1 CDS Vapar_3807 NC_012791.1 4020900 4021202 R KEGG: pag:PLES_45221 hypothetical protein; hypothetical protein complement(4020900..4021202) Variovorax paradoxus S110 7969664 YP_002945688.1 CDS Vapar_3808 NC_012791.1 4021401 4022354 D PFAM: phosphate acetyl/butaryl transferase; KEGG: bph:Bphy_3685 phosphate butyryltransferase; phosphate acetyltransferase 4021401..4022354 Variovorax paradoxus S110 7969665 YP_002945689.1 CDS Vapar_3809 NC_012791.1 4022541 4025546 D PFAM: glycosyl transferase family 51; KEGG: lch:Lcho_3465 hypothetical protein; glycosyl transferase family protein 4022541..4025546 Variovorax paradoxus S110 7969666 YP_002945690.1 CDS Vapar_3810 NC_012791.1 4025699 4026472 D PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: mrd:Mrad2831_5461 2Fe-2S iron-sulfur cluster binding domain-containing protein; (2Fe-2S)-binding domain-containing protein 4025699..4026472 Variovorax paradoxus S110 7969667 YP_002945691.1 CDS Vapar_3811 NC_012791.1 4026469 4027461 D PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: sus:Acid_3649 molybdopterin dehydrogenase, FAD-binding; FAD-binding molybdopterin dehydrogenase 4026469..4027461 Variovorax paradoxus S110 7969668 YP_002945692.1 CDS Vapar_3812 NC_012791.1 4027458 4029635 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: smd:Smed_4735 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 4027458..4029635 Variovorax paradoxus S110 7969669 YP_002945693.1 CDS Vapar_3813 NC_012791.1 4029741 4030673 R PFAM: DMSO reductase anchor subunit (DmsC); KEGG: vei:Veis_3994 DMSO reductase anchor subunit (DmsC); DMSO reductase anchor subunit (DmsC) complement(4029741..4030673) Variovorax paradoxus S110 7969670 YP_002945694.1 CDS Vapar_3814 NC_012791.1 4030678 4031412 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mpt:Mpe_A0859 iron-sulfur cluster protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(4030678..4031412) Variovorax paradoxus S110 7969671 YP_002945695.1 CDS Vapar_3815 NC_012791.1 4031523 4034468 R PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: vei:Veis_3996 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(4031523..4034468) Variovorax paradoxus S110 7969672 YP_002945696.1 CDS Vapar_3816 NC_012791.1 4034553 4035494 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_3997 LysR family transcriptional regulator; LysR family transcriptional regulator 4034553..4035494 Variovorax paradoxus S110 7969673 YP_002945697.1 CDS Vapar_3817 NC_012791.1 4035511 4036281 R PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: vei:Veis_0894 UbiC transcription regulator-associated domain-containing protein; GntR family transcriptional regulator complement(4035511..4036281) Variovorax paradoxus S110 7969674 YP_002945698.1 CDS Vapar_3818 NC_012791.1 4036408 4036689 D KEGG: vei:Veis_0893 D-galactarate dehydratase/altronate hydrolase, N-terminal; D-galactarate dehydratase/altronate hydrolase, N-terminal 4036408..4036689 Variovorax paradoxus S110 7969675 YP_002945699.1 CDS Vapar_3819 NC_012791.1 4036744 4037919 D PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; KEGG: vei:Veis_0892 altronate dehydratase; altronate dehydratase 4036744..4037919 Variovorax paradoxus S110 7969676 YP_002945700.1 CDS Vapar_3820 NC_012791.1 4037933 4038874 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vei:Veis_0891 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 4037933..4038874 Variovorax paradoxus S110 7969677 YP_002945701.1 CDS Vapar_3821 NC_012791.1 4038871 4039872 D PFAM: malate/L-lactate dehydrogenase; KEGG: vei:Veis_0890 malate dehydrogenase (NADP(+)); malate/L-lactate dehydrogenase 4038871..4039872 Variovorax paradoxus S110 7969678 YP_002945702.1 CDS Vapar_3822 NC_012791.1 4039919 4040869 R PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: vei:Veis_4477 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(4039919..4040869) Variovorax paradoxus S110 7969679 YP_002945703.1 CDS Vapar_3823 NC_012791.1 4041101 4042093 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_0889 hypothetical protein; hypothetical protein 4041101..4042093 Variovorax paradoxus S110 7969680 YP_002945704.1 CDS Vapar_3824 NC_012791.1 4042077 4043234 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: hha:Hhal_2060 acetate kinase; acetate kinase complement(4042077..4043234) Variovorax paradoxus S110 7969681 YP_002945705.1 CDS Vapar_3825 NC_012791.1 4043279 4045102 R catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase complement(4043279..4045102) Variovorax paradoxus S110 7969682 YP_002945706.1 CDS Vapar_3826 NC_012791.1 4045261 4046097 D PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: vei:Veis_4000 regulatory proteins, IclR; IclR family transcriptional regulator 4045261..4046097 Variovorax paradoxus S110 7969683 YP_002945707.1 CDS Vapar_3827 NC_012791.1 4046124 4047107 D PFAM: ATPase associated with various cellular activities AAA_5; KEGG: bpy:Bphyt_4365 cobaltochelatase; Cobaltochelatase 4046124..4047107 Variovorax paradoxus S110 7969684 YP_002945708.1 CDS Vapar_3828 NC_012791.1 4047104 4048837 D PFAM: Cobalt chelatase CobT subunit; KEGG: bxe:Bxe_B0688 cobalamin biosynthesis CobT protein; Cobaltochelatase 4047104..4048837 Variovorax paradoxus S110 7969685 YP_002945709.1 CDS Vapar_3829 NC_012791.1 4049276 4050070 D PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: mpt:Mpe_A3670 IclR family transcriptional regulator; IclR family transcriptional regulator 4049276..4050070 Variovorax paradoxus S110 7969686 YP_002945710.1 CDS Vapar_3830 NC_012791.1 4050067 4051059 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_4279 hypothetical protein; hypothetical protein 4050067..4051059 Variovorax paradoxus S110 7969687 YP_002945711.1 CDS Vapar_3831 NC_012791.1 4051078 4052517 D KEGG: vei:Veis_4280 succinate-semialdehyde dehydrogenase (NAD(P)(+)); succinate-semialdehyde dehydrogenase (NAD(P)(+)) 4051078..4052517 Variovorax paradoxus S110 7969688 YP_002945712.1 CDS Vapar_3832 NC_012791.1 4052520 4054049 D PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_4281 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4052520..4054049 Variovorax paradoxus S110 7969689 YP_002945713.1 CDS Vapar_3833 NC_012791.1 4054046 4054849 D PFAM: protein of unknown function DUF81; KEGG: sit:TM1040_0154 hypothetical protein; hypothetical protein 4054046..4054849 Variovorax paradoxus S110 7969690 YP_002945714.1 CDS Vapar_3834 NC_012791.1 4054900 4055922 D KEGG: xom:XOO_3046 hypothetical protein; hypothetical protein 4054900..4055922 Variovorax paradoxus S110 7969691 YP_002945715.1 CDS Vapar_3835 NC_012791.1 4055954 4056769 R PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: dac:Daci_5946 IclR family transcriptional regulator; IclR family transcriptional regulator complement(4055954..4056769) Variovorax paradoxus S110 7969692 YP_002945716.1 CDS Vapar_3836 NC_012791.1 4056866 4058524 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: vei:Veis_4282 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 4056866..4058524 Variovorax paradoxus S110 7969693 YP_002945717.1 CDS Vapar_3837 NC_012791.1 4058521 4059834 D PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: vei:Veis_4283 major facilitator transporter; major facilitator superfamily protein 4058521..4059834 Variovorax paradoxus S110 7969694 YP_002945718.1 CDS Vapar_3838 NC_012791.1 4059940 4060425 R PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pna:Pnap_3341 response regulator receiver protein; LuxR family transcriptional regulator complement(4059940..4060425) Variovorax paradoxus S110 7969695 YP_002945719.1 CDS Vapar_3839 NC_012791.1 4060694 4060915 D KEGG: pna:Pnap_3342 hypothetical protein; hypothetical protein 4060694..4060915 Variovorax paradoxus S110 7969696 YP_002945720.1 CDS Vapar_3840 NC_012791.1 4061102 4061605 D PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: bpy:Bphyt_4959 (2Fe-2S)-binding domain protein; (2Fe-2S)-binding domain-containing protein 4061102..4061605 Variovorax paradoxus S110 7969697 YP_002945721.1 CDS Vapar_3841 NC_012791.1 4061602 4063851 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bcm:Bcenmc03_5950 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 4061602..4063851 Variovorax paradoxus S110 7969698 YP_002945722.1 CDS Vapar_3842 NC_012791.1 4063848 4065158 D PFAM: cytochrome C class I; KEGG: spe:Spro_2321 gluconate 2-dehydrogenase (acceptor); gluconate 2-dehydrogenase (acceptor) 4063848..4065158 Variovorax paradoxus S110 7969699 YP_002945723.1 CDS Vapar_3843 NC_012791.1 4065227 4066273 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pmy:Pmen_3099 LysR family transcriptional regulator; LysR family transcriptional regulator 4065227..4066273 Variovorax paradoxus S110 7969700 YP_002945724.1 CDS Vapar_3844 NC_012791.1 4066191 4067072 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4284 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(4066191..4067072) Variovorax paradoxus S110 7969701 YP_002945725.1 CDS Vapar_3845 NC_012791.1 4067065 4067853 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_4285 ABC transporter; ABC transporter complement(4067065..4067853) Variovorax paradoxus S110 7969702 YP_002945726.1 CDS Vapar_3846 NC_012791.1 4067859 4068872 R KEGG: vei:Veis_4286 taurine ABC transporter periplasmic binding protein; TIGRFAM: taurine ABC transporter periplasmic binding protein; PFAM: substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; taurine ABC transporter periplasmic binding protein complement(4067859..4068872) Variovorax paradoxus S110 7969703 YP_002945727.1 CDS Vapar_3847 NC_012791.1 4069143 4070294 R PFAM: Integrase catalytic region; KEGG: bxe:Bxe_A0541 transposase integrase; integrase catalytic subunit complement(4069143..4070294) Variovorax paradoxus S110 7969704 YP_002945728.1 CDS Vapar_3848 NC_012791.1 4070439 4071959 R PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: vei:Veis_4287 GntR family transcriptional regulator; GntR family transcriptional regulator complement(4070439..4071959) Variovorax paradoxus S110 7969705 YP_002945729.1 CDS Vapar_3849 NC_012791.1 4072077 4072499 D PFAM: protein of unknown function DUF1486; KEGG: pna:Pnap_4728 hypothetical protein; hypothetical protein 4072077..4072499 Variovorax paradoxus S110 7969706 YP_002945730.1 CDS Vapar_3850 NC_012791.1 4072527 4073975 D PFAM: FAD dependent oxidoreductase; KEGG: vei:Veis_4289 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4072527..4073975 Variovorax paradoxus S110 7969707 YP_002945731.1 CDS Vapar_3851 NC_012791.1 4074068 4074532 D PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr7421 acetyltransferase; GCN5-like N-acetyltransferaser 4074068..4074532 Variovorax paradoxus S110 7969708 YP_002945732.1 CDS Vapar_3852 NC_012791.1 4074550 4074900 R hypothetical protein complement(4074550..4074900) Variovorax paradoxus S110 7969709 YP_002945733.1 CDS Vapar_3853 NC_012791.1 4075156 4078323 D TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Pertactin; KEGG: rme:Rmet_0614 outer membrane autotransporter barrel; outer membrane autotransporter barrel domain-containing protein 4075156..4078323 Variovorax paradoxus S110 7969710 YP_002945734.1 CDS Vapar_3854 NC_012791.1 4078354 4079013 R KEGG: pnu:Pnuc_1366 hypothetical protein; hypothetical protein complement(4078354..4079013) Variovorax paradoxus S110 7969711 YP_002945735.1 CDS Vapar_3855 NC_012791.1 4079062 4080375 R PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: rfr:Rfer_3026 hypothetical protein; hypothetical protein complement(4079062..4080375) Variovorax paradoxus S110 7969712 YP_002945736.1 CDS apaH NC_012791.1 4080399 4081250 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 4080399..4081250 Variovorax paradoxus S110 7969713 YP_002945737.1 CDS Vapar_3857 NC_012791.1 4081261 4081977 R PFAM: GCN5-related N-acetyltransferase; KEGG: bcj:BCAM1700 acetyltransferase; GCN5-like N-acetyltransferaser complement(4081261..4081977) Variovorax paradoxus S110 7969714 YP_002945738.1 CDS Vapar_3858 NC_012791.1 4082109 4083584 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: bbr:BB2428 GntR family transcriptional regulator; GntR family transcriptional regulator with aminotransferase domain 4082109..4083584 Variovorax paradoxus S110 7969715 YP_002945739.1 CDS Vapar_3859 NC_012791.1 4083926 4086631 D TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_3347 rhs element Vgr protein; type VI secretion system Vgr family protein 4083926..4086631 Variovorax paradoxus S110 7969716 YP_002945740.1 CDS Vapar_3860 NC_012791.1 4086685 4088760 D SMART: phospholipase D/transphosphatidylase; KEGG: bac:BamMC406_6428 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 4086685..4088760 Variovorax paradoxus S110 7969717 YP_002945741.1 CDS Vapar_3861 NC_012791.1 4088851 4090206 D PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: bac:BamMC406_6427 Sel1 domain-containing protein; Sel1 domain-containing protein repeat-containing protein 4088851..4090206 Variovorax paradoxus S110 7969718 YP_002945742.1 CDS Vapar_3862 NC_012791.1 4090342 4091649 D PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: bac:BamMC406_6427 Sel1 domain-containing protein; Sel1 domain-containing protein repeat-containing protein 4090342..4091649 Variovorax paradoxus S110 7969719 YP_002945743.1 CDS Vapar_3863 NC_012791.1 4091771 4093090 D PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: bxe:Bxe_B2593 lipoprotein; Sel1 domain-containing protein repeat-containing protein 4091771..4093090 Variovorax paradoxus S110 7969720 YP_002945744.1 CDS Vapar_3864 NC_012791.1 4093167 4094285 D KEGG: rso:RS01955 hypothetical protein; hypothetical protein 4093167..4094285 Variovorax paradoxus S110 7969721 YP_002945745.1 CDS Vapar_3865 NC_012791.1 4094352 4095317 R TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: reh:H16_B0887 ABC-type transporter periplasmic component: TauT family; aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein complement(4094352..4095317) Variovorax paradoxus S110 7969722 YP_002945746.1 CDS Vapar_3866 NC_012791.1 4095347 4096513 R PFAM: cytochrome C class I; KEGG: dac:Daci_5620 cytochrome C, mono-and diheme variant-like protein; cytochrome C class I complement(4095347..4096513) Variovorax paradoxus S110 7969723 YP_002945747.1 CDS Vapar_3867 NC_012791.1 4096515 4097312 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rpi:Rpic_4457 ABC transporter; ABC transporter complement(4096515..4097312) Variovorax paradoxus S110 7969724 YP_002945748.1 CDS Vapar_3868 NC_012791.1 4097306 4098388 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_5618 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(4097306..4098388) Variovorax paradoxus S110 7969725 YP_002945749.1 CDS Vapar_3869 NC_012791.1 4098385 4099398 R PFAM: NMT1/THI5 like domain protein; KEGG: rpi:Rpic_4459 NMT1/THI5 like domain protein; NMT1/THI5 like domain-containing protein complement(4098385..4099398) Variovorax paradoxus S110 7969726 YP_002945750.1 CDS Vapar_3870 NC_012791.1 4099421 4100245 R PFAM: class II aldolase/adducin family protein; KEGG: rpi:Rpic_4460 class II aldolase/adducin family protein; hypothetical protein complement(4099421..4100245) Variovorax paradoxus S110 7969727 YP_002945751.1 CDS Vapar_3871 NC_012791.1 4100395 4101504 R PFAM: Luciferase-like monooxygenase; KEGG: reu:Reut_B5047 alkanesulfonate monooxygenase; Alkanesulfonate monooxygenase complement(4100395..4101504) Variovorax paradoxus S110 7969728 YP_002945752.1 CDS Vapar_3872 NC_012791.1 4101541 4102530 R SMART: extracellular solute-binding protein family 3; KEGG: bur:Bcep18194_C7086 ABC nitrate/sulfonate/bicarbonate transporter periplasmic ligand binding protein; family 3 extracellular solute-binding protein complement(4101541..4102530) Variovorax paradoxus S110 7969729 YP_002945753.1 CDS Vapar_3873 NC_012791.1 4102640 4103875 D PFAM: acyl-CoA dehydrogenase type 2 domain; acyl-CoA dehydrogenase domain protein; KEGG: cti:RALTA_B1563 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase type 2 domain-containing protein 4102640..4103875 Variovorax paradoxus S110 7969730 YP_002945754.1 CDS Vapar_3874 NC_012791.1 4103872 4104852 D KEGG: bph:Bphy_5227 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 4103872..4104852 Variovorax paradoxus S110 7969731 YP_002945755.1 CDS Vapar_3875 NC_012791.1 4104849 4105472 D PFAM: cysteine dioxygenase type I; KEGG: rme:Rmet_2216 cysteine dioxygenase type I; cysteine dioxygenase type I 4104849..4105472 Variovorax paradoxus S110 7969732 YP_002945756.1 CDS Vapar_3876 NC_012791.1 4105469 4107094 D PFAM: rhodanese domainprotein; SMART: Rhodanese domain protein; KEGG: reu:Reut_B5044 rhodanese-like protein; rhodanese domain-containing protein 4105469..4107094 Variovorax paradoxus S110 7969733 YP_002945757.1 CDS Vapar_3877 NC_012791.1 4107223 4107444 D KEGG: dac:Daci_4212 hypothetical protein; hypothetical protein 4107223..4107444 Variovorax paradoxus S110 7969734 YP_002945758.1 CDS Vapar_3878 NC_012791.1 4107460 4108920 R PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: pol:Bpro_1516 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein complement(4107460..4108920) Variovorax paradoxus S110 7969735 YP_002945759.1 CDS Vapar_3879 NC_012791.1 4109052 4109939 R PFAM: protein of unknown function zinc metallopeptidase KEGG: pna:Pnap_1057 protein of unknown function, zinc metallopeptidase; hypothetical protein complement(4109052..4109939) Variovorax paradoxus S110 7969736 YP_002945760.1 CDS Vapar_3880 NC_012791.1 4110039 4110605 R TIGRFAM: deoxycytidine triphosphate deaminase; KEGG: pol:Bpro_1505 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase complement(4110039..4110605) Variovorax paradoxus S110 7969737 YP_002945761.1 CDS Vapar_3881 NC_012791.1 4110688 4111974 R Catalyzes the deamination of guanine; guanine deaminase complement(4110688..4111974) Variovorax paradoxus S110 7969738 YP_002945762.1 CDS Vapar_3882 NC_012791.1 4112071 4113171 R PFAM: basic membrane lipoprotein; KEGG: rfr:Rfer_3296 basic membrane lipoprotein; basic membrane lipoprotein complement(4112071..4113171) Variovorax paradoxus S110 7969739 YP_002945763.1 CDS Vapar_3883 NC_012791.1 4113280 4115808 R PFAM: peptidase S45 penicillin amidase; KEGG: aav:Aave_1140 peptidase S45, penicillin amidase; peptidase S45 penicillin amidase complement(4113280..4115808) Variovorax paradoxus S110 7969740 YP_002945764.1 CDS Vapar_3884 NC_012791.1 4115904 4116710 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bmj:BMULJ_05769 AraC family transcriptional regulator; AraC family transcriptional regulator complement(4115904..4116710) Variovorax paradoxus S110 7969741 YP_002945765.1 CDS Vapar_3885 NC_012791.1 4116798 4117745 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_4400 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4116798..4117745) Variovorax paradoxus S110 7970314 YP_002945766.1 CDS Vapar_3886 NC_012791.1 4117843 4119156 D PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_4589 major facilitator superfamily transporter; major facilitator superfamily protein 4117843..4119156 Variovorax paradoxus S110 7970315 YP_002945767.1 CDS Vapar_3887 NC_012791.1 4119117 4120214 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(4119117..4120214) Variovorax paradoxus S110 7970316 YP_002945768.1 CDS Vapar_3888 NC_012791.1 4120335 4120622 D PFAM: cytochrome C class I; KEGG: aav:Aave_3038 cytochrome C, class I; cytochrome C class I 4120335..4120622 Variovorax paradoxus S110 7970317 YP_002945769.1 CDS Vapar_3889 NC_012791.1 4120644 4121546 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pmy:Pmen_2183 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4120644..4121546) Variovorax paradoxus S110 7970318 YP_002945770.1 CDS Vapar_3890 NC_012791.1 4121685 4122698 D PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: ppf:Pput_2862 alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 4121685..4122698 Variovorax paradoxus S110 7970319 YP_002945771.1 CDS Vapar_3891 NC_012791.1 4122723 4123907 R KEGG: aav:Aave_1137 hypothetical protein; hypothetical protein complement(4122723..4123907) Variovorax paradoxus S110 7970320 YP_002945772.1 CDS Vapar_3892 NC_012791.1 4123894 4124892 R PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_B2747 transcriptional regulator; AraC family transcriptional regulator complement(4123894..4124892) Variovorax paradoxus S110 7970321 YP_002945773.1 CDS Vapar_3893 NC_012791.1 4124940 4126097 D PFAM: ThiJ/PfpI domain protein; KEGG: pde:Pden_4364 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 4124940..4126097 Variovorax paradoxus S110 7970322 YP_002945774.1 CDS Vapar_3894 NC_012791.1 4126123 4127088 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_3515 hypothetical protein; hypothetical protein complement(4126123..4127088) Variovorax paradoxus S110 7970323 YP_002945775.1 CDS Vapar_3895 NC_012791.1 4127085 4127978 R PFAM: amidohydrolase 2; KEGG: dac:Daci_3514 amidohydrolase 2; amidohydrolase 2 complement(4127085..4127978) Variovorax paradoxus S110 7970324 YP_002945776.1 CDS Vapar_3896 NC_012791.1 4127988 4129181 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_3050 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(4127988..4129181) Variovorax paradoxus S110 7970325 YP_002945777.1 CDS Vapar_3897 NC_012791.1 4129200 4130198 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_3049 hypothetical protein; hypothetical protein complement(4129200..4130198) Variovorax paradoxus S110 7970326 YP_002945778.1 CDS Vapar_3898 NC_012791.1 4130232 4131104 R PFAM: HpcH/HpaI aldolase; KEGG: dac:Daci_3511 citrate (pro-3S)-lyase; citrate (pro-3S)-lyase complement(4130232..4131104) Variovorax paradoxus S110 7970327 YP_002945779.1 CDS Vapar_3899 NC_012791.1 4131161 4132078 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_3047 LysR family transcriptional regulator; LysR family transcriptional regulator 4131161..4132078 Variovorax paradoxus S110 7970328 YP_002945780.1 CDS Vapar_3900 NC_012791.1 4132127 4133299 R PFAM: basic membrane lipoprotein; KEGG: aav:Aave_1135 basic membrane lipoprotein; basic membrane lipoprotein complement(4132127..4133299) Variovorax paradoxus S110 7970329 YP_002945781.1 CDS Vapar_3901 NC_012791.1 4133349 4134269 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_1485 inner-membrane translocator; inner-membrane translocator complement(4133349..4134269) Variovorax paradoxus S110 7970330 YP_002945782.1 CDS Vapar_3902 NC_012791.1 4134463 4135614 R PFAM: inner-membrane translocator; KEGG: aav:Aave_1133 inner-membrane translocator; inner-membrane translocator complement(4134463..4135614) Variovorax paradoxus S110 7970331 YP_002945783.1 CDS Vapar_3903 NC_012791.1 4135607 4137142 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dac:Daci_2135 ABC transporter; ABC transporter complement(4135607..4137142) Variovorax paradoxus S110 7970332 YP_002945784.1 CDS Vapar_3904 NC_012791.1 4137243 4138604 R PFAM: xanthine/uracil/vitamin C permease; KEGG: dac:Daci_5908 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease complement(4137243..4138604) Variovorax paradoxus S110 7970333 YP_002945785.1 CDS Vapar_3905 NC_012791.1 4138706 4139689 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_1482 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4138706..4139689) Variovorax paradoxus S110 7970334 YP_002945786.1 CDS Vapar_3906 NC_012791.1 4139798 4142248 R KEGG: dac:Daci_5909 xanthine dehydrogenase, molybdopterin binding subunit; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; xanthine dehydrogenase, molybdopterin binding subunit complement(4139798..4142248) Variovorax paradoxus S110 7970335 YP_002945787.1 CDS Vapar_3907 NC_012791.1 4142251 4143879 R TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: dac:Daci_5910 xanthine dehydrogenase, small subunit; xanthine dehydrogenase, small subunit complement(4142251..4143879) Variovorax paradoxus S110 7970336 YP_002945788.1 CDS Vapar_3908 NC_012791.1 4144075 4145346 R PFAM: natural resistance-associated macrophage protein; KEGG: rfr:Rfer_1218 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein complement(4144075..4145346) Variovorax paradoxus S110 7970337 YP_002945789.1 CDS Vapar_3909 NC_012791.1 4145420 4146340 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_1024 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4145420..4146340) Variovorax paradoxus S110 7970338 YP_002945790.1 CDS Vapar_3910 NC_012791.1 4146419 4148578 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: mag:amb0179 indolepyruvate ferredoxin oxidoreductase; indolepyruvate ferredoxin oxidoreductase 4146419..4148578 Variovorax paradoxus S110 7970339 YP_002945791.1 CDS Vapar_3911 NC_012791.1 4148590 4150206 D Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit B 4148590..4150206 Variovorax paradoxus S110 7970340 YP_002945792.1 CDS Vapar_3912 NC_012791.1 4150223 4151428 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pna:Pnap_1020 FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 4150223..4151428 Variovorax paradoxus S110 7970341 YP_002945793.1 CDS Vapar_3913 NC_012791.1 4151467 4152522 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpd:RPD_1885 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP 4151467..4152522 Variovorax paradoxus S110 7970342 YP_002945794.1 CDS Vapar_3914 NC_012791.1 4152526 4153050 D KEGG: bra:BRADO0957 TrapT family, DctQ subunit C4-dicarboxylate transport; TRAP dicarboxylate transporter subunit DctQ 4152526..4153050 Variovorax paradoxus S110 7970343 YP_002945795.1 CDS Vapar_3915 NC_012791.1 4153047 4154348 D TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:blr7841 hypothetical protein; TRAP dicarboxylate transporter subunit DctM 4153047..4154348 Variovorax paradoxus S110 7970344 YP_002945796.1 CDS Vapar_3916 NC_012791.1 4154348 4154779 D PFAM: thioesterase superfamily protein; KEGG: lch:Lcho_0444 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 4154348..4154779 Variovorax paradoxus S110 7970345 YP_002945797.1 CDS Vapar_3917 NC_012791.1 4154789 4154992 D hypothetical protein 4154789..4154992 Variovorax paradoxus S110 7970346 YP_002945798.1 CDS Vapar_3918 NC_012791.1 4155343 4155549 D hypothetical protein 4155343..4155549 Variovorax paradoxus S110 7970347 YP_002945799.1 CDS Vapar_3919 NC_012791.1 4155759 4158491 D KEGG: pfl:PFL_4078 magnesium-transporting ATPase MgtA; TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; magnesium-translocating P-type ATPase 4155759..4158491 Variovorax paradoxus S110 7970348 YP_002945800.1 CDS Vapar_3920 NC_012791.1 4158866 4160308 R PFAM: aldehyde dehydrogenase; KEGG: bpy:Bphyt_2203 aldehyde dehydrogenase; aldehyde dehydrogenase (NAD(+)) complement(4158866..4160308) Variovorax paradoxus S110 7970349 YP_002945801.1 CDS Vapar_3921 NC_012791.1 4160488 4161828 R PFAM: MOFRL domain protein; KEGG: ajs:Ajs_1122 hydroxypyruvate reductase; hydroxypyruvate reductase complement(4160488..4161828) Variovorax paradoxus S110 7970350 YP_002945802.1 CDS Vapar_3922 NC_012791.1 4161907 4163112 R PFAM: protein of unknown function DUF989; KEGG: pol:Bpro_1430 transmembrane protein; hypothetical protein complement(4161907..4163112) Variovorax paradoxus S110 7970351 YP_002945803.1 CDS Vapar_3923 NC_012791.1 4163336 4164142 R TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_1429 protein of unknown function DUF182; xanthine dehydrogenase accessory protein XdhC complement(4163336..4164142) Variovorax paradoxus S110 7970352 YP_002945804.1 CDS Vapar_3924 NC_012791.1 4164166 4164708 D KEGG: dia:Dtpsy_1044 hypothetical protein; hypothetical protein 4164166..4164708 Variovorax paradoxus S110 7970353 YP_002945805.1 CDS Vapar_3925 NC_012791.1 4164713 4165063 R TIGRFAM: hydroxyisourate hydrolase; PFAM: transthyretin; KEGG: dac:Daci_2121 hydroxyisourate hydrolase; hydroxyisourate hydrolase complement(4164713..4165063) Variovorax paradoxus S110 7970354 YP_002945806.1 CDS Vapar_3926 NC_012791.1 4165146 4165820 D PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_1425 transcriptional regulator, GntR family; GntR family transcriptional regulator 4165146..4165820 Variovorax paradoxus S110 7970355 YP_002945807.1 CDS Vapar_3927 NC_012791.1 4165831 4166802 D KEGG: aav:Aave_1111 polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase; urate catabolism protein 4165831..4166802 Variovorax paradoxus S110 7970356 YP_002945808.1 CDS Vapar_3928 NC_012791.1 4166799 4168577 D bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia; bifunctional OHCU decarboxylase/allantoate amidohydrolase 4166799..4168577 Variovorax paradoxus S110 7970357 YP_002945809.1 CDS Vapar_3929 NC_012791.1 4168589 4169824 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; peptidase M20 4168589..4169824 Variovorax paradoxus S110 7970358 YP_002945810.1 CDS Vapar_3930 NC_012791.1 4169922 4170833 D PFAM: alpha/beta hydrolase fold; KEGG: bpa:BPP1032 hydrolase; alpha/beta hydrolase fold protein 4169922..4170833 Variovorax paradoxus S110 7970359 YP_002945811.1 CDS Vapar_3931 NC_012791.1 4170796 4172112 R PFAM: aminotransferase class V; KEGG: aav:Aave_0206 aminotransferase, class V; class V aminotransferase complement(4170796..4172112) Variovorax paradoxus S110 7970360 YP_002945812.1 CDS Vapar_3932 NC_012791.1 4172115 4173008 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: aav:Aave_0205 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(4172115..4173008) Variovorax paradoxus S110 7970361 YP_002945813.1 CDS Vapar_3933 NC_012791.1 4173151 4174071 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_0204 LysR family transcriptional regulator; LysR family transcriptional regulator 4173151..4174071 Variovorax paradoxus S110 7970362 YP_002945814.1 CDS Vapar_3934 NC_012791.1 4174068 4174547 D PFAM: nuclear protein SET; SMART: nuclear protein SET; SET-related domain protein; KEGG: bxe:Bxe_C1219 hypothetical protein; nuclear protein SET 4174068..4174547 Variovorax paradoxus S110 7970363 YP_002945815.1 CDS Vapar_3935 NC_012791.1 4174774 4176267 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: aav:Aave_1098 permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 4174774..4176267 Variovorax paradoxus S110 7970364 YP_002945816.1 CDS Vapar_3936 NC_012791.1 4176298 4177035 D PFAM: Asp/Glu/hydantoin racemase; KEGG: aav:Aave_1097 Asp/Glu racemase; Asp/Glu/hydantoin racemase 4176298..4177035 Variovorax paradoxus S110 7970365 YP_002945817.1 CDS Vapar_3937 NC_012791.1 4177085 4177840 D PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: aav:Aave_1096 GntR family transcriptional regulator; GntR family transcriptional regulator 4177085..4177840 Variovorax paradoxus S110 7970366 YP_002945818.1 CDS Vapar_3938 NC_012791.1 4177859 4178554 R PFAM: regulatory protein TetR; KEGG: spe:Spro_2373 TetR family transcriptional regulator; TetR family transcriptional regulator complement(4177859..4178554) Variovorax paradoxus S110 7970367 YP_002945819.1 CDS Vapar_3939 NC_012791.1 4178674 4179732 D PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NmrA family protein; KEGG: ppu:PP_2986 oxidoreductase; NAD-dependent epimerase/dehydratase 4178674..4179732 Variovorax paradoxus S110 7970368 YP_002945820.1 CDS Vapar_3940 NC_012791.1 4179749 4181005 D KEGG: swi:Swit_3412 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; hypothetical protein 4179749..4181005 Variovorax paradoxus S110 7970369 YP_002945821.1 CDS Vapar_3941 NC_012791.1 4181130 4182617 D TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: dac:Daci_2107 xanthine permease; xanthine permease 4181130..4182617 Variovorax paradoxus S110 7970370 YP_002945822.1 CDS Vapar_3942 NC_012791.1 4182625 4183482 R PFAM: aldo/keto reductase; KEGG: met:M446_3502 aldo/keto reductase; aldo/keto reductase complement(4182625..4183482) Variovorax paradoxus S110 7970371 YP_002945823.1 CDS Vapar_3943 NC_012791.1 4183568 4185748 D KEGG: rfr:Rfer_0922 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase 4183568..4185748 Variovorax paradoxus S110 7970372 YP_002945824.1 CDS Vapar_3944 NC_012791.1 4185745 4186359 D PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rfr:Rfer_0921 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator 4185745..4186359 Variovorax paradoxus S110 7970373 YP_002945825.1 CDS Vapar_3945 NC_012791.1 4186507 4187865 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: cti:RALTA_B0092 alpha-ketoglutarate permease (MFS family); metabolite/H+ symporter, major facilitator superfamily (MFS) 4186507..4187865 Variovorax paradoxus S110 7970374 YP_002945826.1 CDS Vapar_3946 NC_012791.1 4187887 4188843 R hypothetical protein complement(4187887..4188843) Variovorax paradoxus S110 7970375 YP_002945827.1 CDS Vapar_3947 NC_012791.1 4188840 4190177 R PFAM: glycosyl transferase family 2; KEGG: bar:GBAA3480 glycosyl transferase, group 2 family protein/polysaccharide deacetylase family protein; family 2 glycosyl transferase complement(4188840..4190177) Variovorax paradoxus S110 7970376 YP_002945828.1 CDS Vapar_3948 NC_012791.1 4190408 4191736 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 4190408..4191736 Variovorax paradoxus S110 7970377 YP_002945829.1 CDS Vapar_3949 NC_012791.1 4191746 4192450 D PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dac:Daci_0236 GntR family transcriptional regulator; GntR family transcriptional regulator 4191746..4192450 Variovorax paradoxus S110 7970378 YP_002945830.1 CDS Vapar_3950 NC_012791.1 4192537 4193619 D PFAM: protein of unknown function UPF0118; KEGG: mms:mma_3509 hypothetical protein; hypothetical protein 4192537..4193619 Variovorax paradoxus S110 7970379 YP_002945831.1 CDS Vapar_3951 NC_012791.1 4193788 4194219 D KEGG: rso:RS05215 hypothetical protein; hypothetical protein 4193788..4194219 Variovorax paradoxus S110 7970380 YP_002945832.1 CDS Vapar_3952 NC_012791.1 4194233 4195732 D PFAM: Carotenoid oxygenase; KEGG: rpi:Rpic_3919 carotenoid oxygenase; Carotenoid oxygenase 4194233..4195732 Variovorax paradoxus S110 7970381 YP_002945833.1 CDS Vapar_3953 NC_012791.1 4195751 4196653 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_2116 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4195751..4196653) Variovorax paradoxus S110 7970382 YP_002945834.1 CDS Vapar_3954 NC_012791.1 4196848 4198641 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 4196848..4198641 Variovorax paradoxus S110 7970383 YP_002945835.1 CDS Vapar_3955 NC_012791.1 4198658 4199437 D KEGG: dac:Daci_2118 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: xylose isomerase; hydroxypyruvate isomerase 4198658..4199437 Variovorax paradoxus S110 7970384 YP_002945836.1 CDS Vapar_3956 NC_012791.1 4199466 4200374 D KEGG: mpt:Mpe_A0975 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; 2-hydroxy-3-oxopropionate reductase 4199466..4200374 Variovorax paradoxus S110 7970385 YP_002945837.1 CDS Vapar_3957 NC_012791.1 4200378 4201712 R PFAM: tryptophan halogenase; monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: tbd:Tbd_2763 oxidoreductase, FAD-binding; tryptophan halogenase complement(4200378..4201712) Variovorax paradoxus S110 7970386 YP_002945838.1 CDS Vapar_3958 NC_012791.1 4201932 4204235 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 4201932..4204235 Variovorax paradoxus S110 7970387 YP_002945839.1 CDS Vapar_3959 NC_012791.1 4204429 4205463 D PFAM: NMT1/THI5 like domain protein; KEGG: dac:Daci_1138 NMT1/THI5-like domain-containing protein; NMT1/THI5 like domain-containing protein 4204429..4205463 Variovorax paradoxus S110 7970388 YP_002945840.1 CDS Vapar_3960 NC_012791.1 4205463 4206323 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aav:Aave_1092 ABC transporter-related protein; ABC transporter 4205463..4206323 Variovorax paradoxus S110 7970389 YP_002945841.1 CDS Vapar_3961 NC_012791.1 4206333 4207103 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1091 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 4206333..4207103 Variovorax paradoxus S110 7970390 YP_002945842.1 CDS Vapar_3962 NC_012791.1 4207114 4207590 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dac:Daci_1141 CMP/dCMP deaminase zinc-binding; zinc-binding CMP/dCMP deaminase 4207114..4207590 Variovorax paradoxus S110 7970391 YP_002945843.1 CDS Vapar_3963 NC_012791.1 4207598 4207822 R KEGG: azo:azo1065 hypothetical protein; hypothetical protein complement(4207598..4207822) Variovorax paradoxus S110 7970392 YP_002945844.1 CDS Vapar_3964 NC_012791.1 4207866 4208762 R PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: kpn:KPN_02997 hypothetical protein; Aspartyl/Asparaginyl beta-hydroxylase complement(4207866..4208762) Variovorax paradoxus S110 7970393 YP_002945845.1 CDS Vapar_3965 NC_012791.1 4208905 4209303 R PFAM: OsmC family protein; KEGG: pol:Bpro_2898 OsmC-like protein; OsmC family protein complement(4208905..4209303) Variovorax paradoxus S110 7970394 YP_002945846.1 CDS Vapar_3966 NC_012791.1 4209358 4209825 R PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: dac:Daci_3118 AsnC family transcriptional regulator; AsnC family transcriptional regulator complement(4209358..4209825) Variovorax paradoxus S110 7974531 YP_002945847.1 CDS Vapar_3967 NC_012791.1 4209955 4211256 D catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 4209955..4211256 Variovorax paradoxus S110 7974532 YP_002945848.1 CDS Vapar_3968 NC_012791.1 4211457 4212539 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: bbt:BBta_1261 hypothetical protein; Rieske (2Fe-2S) domain-containing protein complement(4211457..4212539) Variovorax paradoxus S110 7974533 YP_002945849.1 CDS Vapar_3969 NC_012791.1 4212836 4213876 D PFAM: NMT1/THI5 like domain protein; KEGG: dac:Daci_1136 NMT1/THI5-like domain-containing protein; NMT1/THI5 like domain-containing protein 4212836..4213876 Variovorax paradoxus S110 7974534 YP_002945850.1 CDS Vapar_3970 NC_012791.1 4213873 4214403 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: aav:Aave_1083 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 4213873..4214403 Variovorax paradoxus S110 7974535 YP_002945851.1 CDS Vapar_3971 NC_012791.1 4214443 4215273 D PFAM: Urease accessory protein UreD; KEGG: aav:Aave_1082 urease accessory protein UreD; Urease accessory protein UreD 4214443..4215273 Variovorax paradoxus S110 7974536 YP_002945852.1 CDS Vapar_3972 NC_012791.1 4215278 4216150 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_4138 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4215278..4216150) Variovorax paradoxus S110 7974537 YP_002945853.1 CDS Vapar_3973 NC_012791.1 4216259 4216849 D KEGG: vei:Veis_4137 hypothetical protein; hypothetical protein 4216259..4216849 Variovorax paradoxus S110 7974538 YP_002945854.1 CDS Vapar_3974 NC_012791.1 4216931 4218526 D SMART: rhodanese domainprotein; KEGG: vei:Veis_4136 rhodanese domain-containing protein; rhodanese domain-containing protein 4216931..4218526 Variovorax paradoxus S110 7974539 YP_002945855.1 CDS Vapar_3975 NC_012791.1 4218586 4219596 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_4135 hypothetical protein; hypothetical protein 4218586..4219596 Variovorax paradoxus S110 7974540 YP_002945856.1 CDS Vapar_3976 NC_012791.1 4219632 4220834 D TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: vei:Veis_4134 cystathionine beta-lyase; cystathionine beta-lyase 4219632..4220834 Variovorax paradoxus S110 7974541 YP_002945857.1 CDS Vapar_3977 NC_012791.1 4220852 4221688 R KEGG: reu:Reut_B3674 hypothetical protein; hypothetical protein complement(4220852..4221688) Variovorax paradoxus S110 7974542 YP_002945858.1 CDS Vapar_3978 NC_012791.1 4221703 4222035 R PFAM: protein of unknown function DUF1161; KEGG: mpt:Mpe_A3604 hypothetical protein; hypothetical protein complement(4221703..4222035) Variovorax paradoxus S110 7974543 YP_002945859.1 CDS Vapar_3979 NC_012791.1 4222160 4222579 R KEGG: dac:Daci_3683 hypothetical protein; hypothetical protein complement(4222160..4222579) Variovorax paradoxus S110 7974544 YP_002945860.1 CDS Vapar_3980 NC_012791.1 4222702 4224861 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_2953 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(4222702..4224861) Variovorax paradoxus S110 7974545 YP_002945861.1 CDS Vapar_3981 NC_012791.1 4225095 4225301 R PFAM: protein of unknown function DUF466; KEGG: bph:Bphy_6472 hypothetical protein; hypothetical protein complement(4225095..4225301) Variovorax paradoxus S110 7974546 YP_002945862.1 CDS Vapar_3982 NC_012791.1 4225315 4227381 R PFAM: carbon starvation protein CstA; KEGG: aav:Aave_4228 carbon starvation protein CstA; carbon starvation protein CstA complement(4225315..4227381) Variovorax paradoxus S110 7974547 YP_002945863.1 CDS Vapar_3983 NC_012791.1 4227508 4227912 R KEGG: smt:Smal_0572 hypothetical protein; hypothetical protein complement(4227508..4227912) Variovorax paradoxus S110 7974548 YP_002945864.1 CDS Vapar_3984 NC_012791.1 4228047 4228568 R PFAM: NLP/P60 protein; KEGG: ajs:Ajs_0001 NLP/P60 protein; NLP/P60 protein complement(4228047..4228568) Variovorax paradoxus S110 7974549 YP_002945865.1 CDS Vapar_3985 NC_012791.1 4228578 4229000 R PFAM: Domain of unknown function DUF1801; KEGG: pol:Bpro_1381 hypothetical protein; hypothetical protein complement(4228578..4229000) Variovorax paradoxus S110 7974550 YP_002945866.1 CDS Vapar_3986 NC_012791.1 4229117 4229677 D hypothetical protein 4229117..4229677 Variovorax paradoxus S110 7974551 YP_002945867.1 CDS Vapar_3987 NC_012791.1 4229674 4230867 D KEGG: scl:sce5075 hypothetical protein; hypothetical protein 4229674..4230867 Variovorax paradoxus S110 7974552 YP_002945868.1 CDS Vapar_3988 NC_012791.1 4230872 4231708 D PFAM: Extensin family protein; KEGG: pna:Pnap_1529 extensin family protein; Extensin family protein 4230872..4231708 Variovorax paradoxus S110 7974553 YP_002945869.1 CDS Vapar_3989 NC_012791.1 4231727 4232137 R KEGG: cak:Caul_4651 integral membrane sensor signal transduction histidine kinase; hypothetical protein complement(4231727..4232137) Variovorax paradoxus S110 7974554 YP_002945870.1 CDS Vapar_3990 NC_012791.1 4232375 4233943 D PFAM: beta-lactamase; KEGG: ade:Adeh_1749 beta-lactamase; beta-lactamase 4232375..4233943 Variovorax paradoxus S110 7974555 YP_002945871.1 CDS Vapar_3991 NC_012791.1 4233946 4234569 R PFAM: protein of unknown function DUF938; KEGG: rfr:Rfer_1812 hypothetical protein; hypothetical protein complement(4233946..4234569) Variovorax paradoxus S110 7974556 YP_002945872.1 CDS Vapar_3992 NC_012791.1 4234620 4235264 R PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: aav:Aave_4229 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator complement(4234620..4235264) Variovorax paradoxus S110 7974557 YP_002945873.1 CDS Vapar_3993 NC_012791.1 4235261 4236631 R KEGG: aav:Aave_4230 integral membrane sensor signal transduction histidine kinase; PFAM: Cache type 2 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase complement(4235261..4236631) Variovorax paradoxus S110 7974558 YP_002945874.1 CDS Vapar_3994 NC_012791.1 4236716 4237132 D KEGG: rpi:Rpic_3384 hypothetical protein; hypothetical protein 4236716..4237132 Variovorax paradoxus S110 7974559 YP_002945875.1 CDS Vapar_3995 NC_012791.1 4237165 4238103 R SMART: rhodanese domainprotein; KEGG: mpt:Mpe_A3647 hypothetical protein; rhodanese domain-containing protein complement(4237165..4238103) Variovorax paradoxus S110 7974560 YP_002945876.1 CDS Vapar_3996 NC_012791.1 4238144 4239154 R PFAM: aldo/keto reductase; KEGG: scl:sce2610 oxidoreductase; aldo/keto reductase complement(4238144..4239154) Variovorax paradoxus S110 7974561 YP_002945877.1 CDS Vapar_3997 NC_012791.1 4239223 4240764 R KEGG: pzu:PHZ_c2444 alkaline phosphatase D; alkaline phosphatase complement(4239223..4240764) Variovorax paradoxus S110 7974562 YP_002945878.1 CDS Vapar_3998 NC_012791.1 4240761 4241531 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rec:RHECIAT_CH0002889 glycerophosphoryl diester phosphodiesterase protein; glycerophosphoryl diester phosphodiesterase complement(4240761..4241531) Variovorax paradoxus S110 7974563 YP_002945879.1 CDS Vapar_3999 NC_012791.1 4241550 4242470 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL90113 permease component of ABC transporter protein; binding-protein-dependent transport systems inner membrane component complement(4241550..4242470) Variovorax paradoxus S110 7974564 YP_002945880.1 CDS Vapar_4000 NC_012791.1 4242495 4243403 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02751 sn-glycerol-3-phosphate ABC transporter permease protein; sn-glycerol-3-phosphate ABC transporter permease complement(4242495..4243403) Variovorax paradoxus S110 7974565 YP_002945881.1 CDS Vapar_4001 NC_012791.1 4243417 4244745 R PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL90111 periplasmic component of ABC transporter; ABC transporter periplasmic protein complement(4243417..4244745) Variovorax paradoxus S110 7974566 YP_002945882.1 CDS Vapar_4002 NC_012791.1 4244791 4246062 R PFAM: 3-dehydroquinate synthase; KEGG: bha:BH1862 L-arabinose utilization protein; glycerol-1-phosphate dehydrogenase (NAD(P)(+)) complement(4244791..4246062) Variovorax paradoxus S110 7974567 YP_002945883.1 CDS Vapar_4003 NC_012791.1 4246319 4247278 D PFAM: sugar-binding domain protein; KEGG: rec:RHECIAT_CH0002894 transcriptional regulator protein, DeoR family; DeoR family transcriptional regulator 4246319..4247278 Variovorax paradoxus S110 7974568 YP_002945884.1 CDS Vapar_4004 NC_012791.1 4247287 4248540 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: blue (type 1) copper domain protein; KEGG: bja:bll4706 hypothetical protein; 40-residue YVTN family beta-propeller repeat-containing protein complement(4247287..4248540) Variovorax paradoxus S110 7974569 YP_002945885.1 CDS Vapar_4005 NC_012791.1 4248677 4249240 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bpy:Bphyt_1784 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 4248677..4249240 Variovorax paradoxus S110 7974570 YP_002945886.1 CDS Vapar_4006 NC_012791.1 4249227 4249892 D KEGG: bid:Bind_0338 transmembrane anti-sigma factor; transmembrane anti-sigma factor 4249227..4249892 Variovorax paradoxus S110 7974571 YP_002945887.1 CDS Vapar_4007 NC_012791.1 4249898 4251157 R PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_3492 major facilitator superfamily transporter; major facilitator superfamily protein complement(4249898..4251157) Variovorax paradoxus S110 7974572 YP_002945888.1 CDS Vapar_4008 NC_012791.1 4251284 4251976 R KEGG: pol:Bpro_1397 ABC transporter; TIGRFAM: urea ABC transporter ATP-binding protein UrtE; PFAM: ABC transporter; SMART: ATPase AAA; urea ABC transporter ATP-binding protein UrtE complement(4251284..4251976) Variovorax paradoxus S110 7974573 YP_002945889.1 CDS Vapar_4009 NC_012791.1 4252487 4253365 R KEGG: pna:Pnap_1000 ABC transporter; TIGRFAM: urea ABC transporter ATP-binding protein UrtD; PFAM: ABC transporter; SMART: ATPase AAA; urea ABC transporter ATP-binding protein UrtD complement(4252487..4253365) Variovorax paradoxus S110 7974574 YP_002945890.1 CDS Vapar_4010 NC_012791.1 4253541 4254758 R TIGRFAM: urea ABC transporter permease protein UrtC; PFAM: inner-membrane translocator; KEGG: pol:Bpro_1395 inner-membrane translocator; urea ABC transporter permease complement(4253541..4254758) Variovorax paradoxus S110 7974575 YP_002945891.1 CDS Vapar_4011 NC_012791.1 4254755 4256302 R TIGRFAM: urea ABC transporter permease protein UrtB; PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3380 inner-membrane translocator; urea ABC transporter permease complement(4254755..4256302) Variovorax paradoxus S110 7974576 YP_002945892.1 CDS Vapar_4012 NC_012791.1 4256500 4257768 R TIGRFAM: urea ABC transporter urea binding protein; KEGG: aav:Aave_3500 twin-arginine translocation pathway signal; urea ABC transporter urea binding protein complement(4256500..4257768) Variovorax paradoxus S110 7974577 YP_002945893.1 CDS Vapar_4013 NC_012791.1 4257887 4258579 R KEGG: nha:Nham_1574 hypothetical protein; hypothetical protein complement(4257887..4258579) Variovorax paradoxus S110 7974578 YP_002945894.1 CDS Vapar_4014 NC_012791.1 4258706 4259035 R KEGG: pol:Bpro_1735 hypothetical protein; hypothetical protein complement(4258706..4259035) Variovorax paradoxus S110 7974579 YP_002945895.1 CDS Vapar_4015 NC_012791.1 4259082 4260560 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1808 transporter; major facilitator superfamily protein complement(4259082..4260560) Variovorax paradoxus S110 7974580 YP_002945896.1 CDS Vapar_4016 NC_012791.1 4260637 4261023 R KEGG: bja:bll3019 hypothetical protein; hypothetical protein complement(4260637..4261023) Variovorax paradoxus S110 7974581 YP_002945897.1 CDS Vapar_4017 NC_012791.1 4261138 4262064 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mmw:Mmwyl1_2496 helix-turn-helix domain-containing protein; AraC family transcriptional regulator 4261138..4262064 Variovorax paradoxus S110 7974582 YP_002945898.1 CDS Vapar_4018 NC_012791.1 4262061 4263128 R KEGG: azo:azo0570 hypothetical protein; hypothetical protein complement(4262061..4263128) Variovorax paradoxus S110 7974583 YP_002945899.1 CDS Vapar_4019 NC_012791.1 4263177 4264097 R PFAM: protein of unknown function DUF344; KEGG: vei:Veis_1774 hypothetical protein; hypothetical protein complement(4263177..4264097) Variovorax paradoxus S110 7974584 YP_002945900.1 CDS Vapar_4020 NC_012791.1 4264247 4265281 D PFAM: Mg2 transporter protein CorA family protein; KEGG: dac:Daci_3048 Mg2 transporter protein CorA family protein; Mg2 transporter protein CorA family protein 4264247..4265281 Variovorax paradoxus S110 7974585 YP_002945901.1 CDS Vapar_4021 NC_012791.1 4265379 4266236 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pol:Bpro_1005 PHP-like; PHP domain-containing protein 4265379..4266236 Variovorax paradoxus S110 7974586 YP_002945902.1 CDS Vapar_4022 NC_012791.1 4266233 4267210 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_1004 transmembrane protein; hypothetical protein 4266233..4267210 Variovorax paradoxus S110 7974587 YP_002945903.1 CDS Vapar_4023 NC_012791.1 4267226 4267861 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: aav:Aave_3708 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 4267226..4267861 Variovorax paradoxus S110 7974588 YP_002945904.1 CDS Vapar_4024 NC_012791.1 4267905 4268576 D PFAM: peptidase M50; KEGG: aav:Aave_3710 peptidase M50; peptidase M50 4267905..4268576 Variovorax paradoxus S110 7974589 YP_002945905.1 CDS Vapar_4025 NC_012791.1 4268593 4269924 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 4268593..4269924 Variovorax paradoxus S110 7974590 YP_002945906.1 CDS Vapar_4026 NC_012791.1 4269997 4270599 D PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: pol:Bpro_1000 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4269997..4270599 Variovorax paradoxus S110 7974591 YP_002945907.1 CDS Vapar_4027 NC_012791.1 4270776 4272191 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_0999 periplasmic sensor signal transduction histidine kinase; histidine kinase complement(4270776..4272191) Variovorax paradoxus S110 7974592 YP_002945908.1 CDS Vapar_4028 NC_012791.1 4272576 4273907 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(4272576..4273907) Variovorax paradoxus S110 7974594 YP_002945909.1 CDS Vapar_4029 NC_012791.1 4273969 4274370 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: pae:PA1353 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 4273969..4274370 Variovorax paradoxus S110 7974595 YP_002945910.1 CDS Vapar_4030 NC_012791.1 4274483 4275445 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(4274483..4275445) Variovorax paradoxus S110 7974596 YP_002945911.1 CDS ispH NC_012791.1 4275442 4276410 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(4275442..4276410) Variovorax paradoxus S110 7974597 YP_002945912.1 CDS Vapar_4032 NC_012791.1 4276445 4276888 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: aav:Aave_3772 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(4276445..4276888) Variovorax paradoxus S110 7974598 YP_002945913.1 CDS Vapar_4033 NC_012791.1 4276998 4277675 D TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: dia:Dtpsy_2777 DNA repair protein RadC; DNA repair protein RadC 4276998..4277675 Variovorax paradoxus S110 7974599 YP_002945914.1 CDS Vapar_4034 NC_012791.1 4277675 4278331 D PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: dia:Dtpsy_2779 Smr protein/MutS2; Smr protein/MutS2 4277675..4278331 Variovorax paradoxus S110 7974600 YP_002945915.1 CDS Vapar_4035 NC_012791.1 4278345 4279568 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bav:BAV2072 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(4278345..4279568) Variovorax paradoxus S110 7974601 YP_002945916.1 CDS Vapar_4036 NC_012791.1 4279598 4280017 R PFAM: globin; KEGG: pna:Pnap_0847 globin; globin complement(4279598..4280017) Variovorax paradoxus S110 7974602 YP_002945917.1 CDS Vapar_4037 NC_012791.1 4280044 4281240 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(4280044..4281240) Variovorax paradoxus S110 7974603 YP_002945918.1 CDS Vapar_4038 NC_012791.1 4281431 4282258 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: pae:PA4195 binding protein component of ABC transporter; family 3 extracellular solute-binding protein 4281431..4282258 Variovorax paradoxus S110 7974604 YP_002945919.1 CDS Vapar_4039 NC_012791.1 4282349 4283044 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pag:PLES_07331 permease of ABC transporter; polar amino acid ABC transporter inner membrane subunit 4282349..4283044 Variovorax paradoxus S110 7974605 YP_002945920.1 CDS Vapar_4040 NC_012791.1 4283058 4283780 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA4193 ABC transporter permease; polar amino acid ABC transporter inner membrane subunit 4283058..4283780 Variovorax paradoxus S110 7974606 YP_002945921.1 CDS Vapar_4041 NC_012791.1 4283777 4284520 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pag:PLES_07351 ATP-binding component of ABC transporter; ABC transporter 4283777..4284520 Variovorax paradoxus S110 7974607 YP_002945922.1 CDS Vapar_4042 NC_012791.1 4284522 4285541 D PFAM: 2OG-Fe(II) oxygenase; KEGG: pag:PLES_07361 iron/ascorbate oxidoreductase; 2OG-Fe(II) oxygenase 4284522..4285541 Variovorax paradoxus S110 7974608 YP_002945923.1 CDS Vapar_4043 NC_012791.1 4285484 4285819 R hypothetical protein complement(4285484..4285819) Variovorax paradoxus S110 7974609 YP_002945924.1 CDS Vapar_4044 NC_012791.1 4285816 4286502 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: bpm:BURPS1710b_1218 hydrolase; HAD superfamily hydrolase complement(4285816..4286502) Variovorax paradoxus S110 7974610 YP_002945925.1 CDS Vapar_4045 NC_012791.1 4286584 4287924 R PFAM: general substrate transporter; KEGG: mpt:Mpe_A1745 membrane transport protein; general substrate transporter complement(4286584..4287924) Variovorax paradoxus S110 7974611 YP_002945926.1 CDS Vapar_4046 NC_012791.1 4288100 4289128 D TIGRFAM: ubiquinol oxidase subunit II; PFAM: COX aromatic rich domain protein; cytochrome C oxidase subunit II; KEGG: mpt:Mpe_A1744 cytochrome o ubiquinol oxidase chain II protein; ubiquinol oxidase subunit II 4288100..4289128 Variovorax paradoxus S110 7974368 YP_002945927.1 CDS Vapar_4047 NC_012791.1 4289125 4291137 D KEGG: mpt:Mpe_A1743 cytochrome-c oxidase; TIGRFAM: cytochrome o ubiquinol oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 4289125..4291137 Variovorax paradoxus S110 7974369 YP_002945928.1 CDS Vapar_4048 NC_012791.1 4291130 4291795 D TIGRFAM: cytochrome o ubiquinol oxidase subunit III; PFAM: cytochrome C oxidase subunit III; KEGG: mpt:Mpe_A1742 cytochrome ubiquinol oxidase subunit III; cytochrome o ubiquinol oxidase subunit III 4291130..4291795 Variovorax paradoxus S110 7974370 YP_002945929.1 CDS Vapar_4049 NC_012791.1 4291792 4292181 D TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: bbr:BB1307 cytochrome ubiquinol oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 4291792..4292181 Variovorax paradoxus S110 7974371 YP_002945930.1 CDS Vapar_4050 NC_012791.1 4292178 4293035 D PFAM: Surfeit locus 1 family protein; KEGG: bbt:BBta_2034 SURF1 family protein; Surfeit locus 1 family protein 4292178..4293035 Variovorax paradoxus S110 7974372 YP_002945931.1 CDS Vapar_4051 NC_012791.1 4293019 4294416 D PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: mms:mma_2635 two-component sensor histidine kinase; histidine kinase 4293019..4294416 Variovorax paradoxus S110 7974373 YP_002945932.1 CDS Vapar_4052 NC_012791.1 4294413 4294961 D PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; KEGG: mpt:Mpe_A1738 two-component response regulator; two component Fis family transcriptional regulator 4294413..4294961 Variovorax paradoxus S110 7974374 YP_002945933.1 CDS Vapar_4053 NC_012791.1 4294963 4295625 D TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: net:Neut_0487 channel protein, hemolysin III family protein; hemolysin III family channel protein 4294963..4295625 Variovorax paradoxus S110 7974375 YP_002945934.1 CDS Vapar_4054 NC_012791.1 4295934 4296158 R PFAM: SlyX family protein; KEGG: bbr:BB1266 hypothetical protein; SlyX family protein complement(4295934..4296158) Variovorax paradoxus S110 7974376 YP_002945935.1 CDS Vapar_4055 NC_012791.1 4296163 4297647 R KEGG: xau:Xaut_0674 hypothetical protein; hypothetical protein complement(4296163..4297647) Variovorax paradoxus S110 7974377 YP_002945936.1 CDS Vapar_4056 NC_012791.1 4297738 4300254 R PFAM: protein of unknown function DUF214; KEGG: aav:Aave_3824 hypothetical protein; hypothetical protein complement(4297738..4300254) Variovorax paradoxus S110 7974378 YP_002945937.1 CDS Vapar_4057 NC_012791.1 4300301 4301173 R KEGG: rfr:Rfer_3256 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD complement(4300301..4301173) Variovorax paradoxus S110 7974379 YP_002945938.1 CDS Vapar_4058 NC_012791.1 4301170 4301583 R KEGG: pol:Bpro_0941 hypothetical protein; hypothetical protein complement(4301170..4301583) Variovorax paradoxus S110 7974380 YP_002945939.1 CDS Vapar_4059 NC_012791.1 4301580 4302806 R TIGRFAM: formate dehydrogenase, subunit gamma; KEGG: pna:Pnap_0837 formate dehydrogenase, subunit gamma; formate dehydrogenase subunit gamma complement(4301580..4302806) Variovorax paradoxus S110 7974381 YP_002945940.1 CDS Vapar_4060 NC_012791.1 4302818 4303072 R KEGG: dia:Dtpsy_2789 lipoprotein; lipoprotein complement(4302818..4303072) Variovorax paradoxus S110 7974382 YP_002945941.1 CDS Vapar_4061 NC_012791.1 4303069 4303692 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pna:Pnap_0835 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(4303069..4303692) Variovorax paradoxus S110 7974383 YP_002945942.1 CDS Vapar_4062 NC_012791.1 4303702 4306692 R PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: pna:Pnap_0834 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(4303702..4306692) Variovorax paradoxus S110 7974384 YP_002945943.1 CDS Vapar_4063 NC_012791.1 4306708 4306938 R KEGG: pol:Bpro_0936 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal complement(4306708..4306938) Variovorax paradoxus S110 7974385 YP_002945944.1 CDS Vapar_4064 NC_012791.1 4307050 4307667 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: pol:Bpro_0935 cytoplasmic chaperone TorD; cytoplasmic chaperone TorD family protein complement(4307050..4307667) Variovorax paradoxus S110 7974386 YP_002945945.1 CDS Vapar_4065 NC_012791.1 4307664 4309805 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_3467 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(4307664..4309805) Variovorax paradoxus S110 7974387 YP_002945946.1 CDS Vapar_4067 NC_012791.1 4310387 4310956 R KEGG: bbr:BB2117 hypothetical protein; hypothetical protein complement(4310387..4310956) Variovorax paradoxus S110 7974389 YP_002945947.1 CDS Vapar_4068 NC_012791.1 4310976 4311770 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bxe:Bxe_B1481 ABC molybdate transporter ATPase; ABC transporter complement(4310976..4311770) Variovorax paradoxus S110 7974390 YP_002945948.1 CDS Vapar_4069 NC_012791.1 4311767 4312516 R TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_B1480 ABC molybdate transporter periplasmic ligand binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(4311767..4312516) Variovorax paradoxus S110 7974391 YP_002945949.1 CDS Vapar_4070 NC_012791.1 4312546 4313229 R TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B1479 ABC molybdate transporter inner membrane subunit; molybdate ABC transporter inner membrane subunit complement(4312546..4313229) Variovorax paradoxus S110 7974392 YP_002945950.1 CDS Vapar_4071 NC_012791.1 4313343 4313690 R PFAM: regulatory protein LysR; KEGG: pol:Bpro_2496 transcriptional regulator, ModE family; ModE family transcriptional regulator complement(4313343..4313690) Variovorax paradoxus S110 7974393 YP_002945951.1 CDS Vapar_4072 NC_012791.1 4313774 4316647 R TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: pnu:Pnuc_1109 formate dehydrogenase, subunit alpha; formate dehydrogenase subunit alpha complement(4313774..4316647) Variovorax paradoxus S110 7974394 YP_002945952.1 CDS Vapar_4073 NC_012791.1 4316732 4318570 R PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: pna:Pnap_0825 NADH dehydrogenase (quinone); Respiratory-chain NADH dehydrogenase domain 51 kDa subunit complement(4316732..4318570) Variovorax paradoxus S110 7974395 YP_002945953.1 CDS Vapar_4074 NC_012791.1 4318729 4319655 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pna:Pnap_0823 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4318729..4319655) Variovorax paradoxus S110 7974396 YP_002945954.1 CDS Vapar_4075 NC_012791.1 4319689 4320780 R PFAM: protein of unknown function DUF59; KEGG: pol:Bpro_0931 iron sulfur binding protein; hypothetical protein complement(4319689..4320780) Variovorax paradoxus S110 7974397 YP_002945955.1 CDS Vapar_4076 NC_012791.1 4320885 4322078 D PFAM: patatin; KEGG: vei:Veis_4479 patatin; patatin 4320885..4322078 Variovorax paradoxus S110 7974398 YP_002945956.1 CDS Vapar_4077 NC_012791.1 4322128 4322814 R PFAM: protein of unknown function DUF480; KEGG: dar:Daro_2469 hypothetical protein; hypothetical protein complement(4322128..4322814) Variovorax paradoxus S110 7974399 YP_002945957.1 CDS Vapar_4078 NC_012791.1 4322862 4323578 R KEGG: rsq:Rsph17025_2923 periplasmic protein-like protein; periplasmic protein-like protein complement(4322862..4323578) Variovorax paradoxus S110 7974400 YP_002945958.1 CDS Vapar_4079 NC_012791.1 4323605 4324636 R PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: rfr:Rfer_2380 isocitrate dehydrogenase (NAD+); isocitrate dehydrogenase (NAD(+)) complement(4323605..4324636) Variovorax paradoxus S110 7974401 YP_002945959.1 CDS Vapar_4080 NC_012791.1 4324759 4325397 R KEGG: pen:PSEEN4849 transferase; LpxA family; transferase; LpxA family complement(4324759..4325397) Variovorax paradoxus S110 7974402 YP_002945960.1 CDS metG NC_012791.1 4325470 4327584 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 4325470..4327584 Variovorax paradoxus S110 7974403 YP_002945961.1 CDS Vapar_4082 NC_012791.1 4327610 4328281 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dac:Daci_2767 GntR family transcriptional regulator; GntR family transcriptional regulator complement(4327610..4328281) Variovorax paradoxus S110 7974404 YP_002945962.1 CDS Vapar_4083 NC_012791.1 4328340 4329095 D PFAM: enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_2768 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4328340..4329095 Variovorax paradoxus S110 7974405 YP_002945963.1 CDS Vapar_4084 NC_012791.1 4329152 4330102 R PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: vei:Veis_4477 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(4329152..4330102) Variovorax paradoxus S110 7974406 YP_002945964.1 CDS Vapar_4085 NC_012791.1 4330333 4331307 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_1257 hypothetical protein; hypothetical protein 4330333..4331307 Variovorax paradoxus S110 7974407 YP_002945965.1 CDS Vapar_4086 NC_012791.1 4331304 4332476 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_1258 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 4331304..4332476 Variovorax paradoxus S110 7974408 YP_002945966.1 CDS Vapar_4087 NC_012791.1 4332499 4332723 D KEGG: dia:Dtpsy_2807 hypothetical protein; hypothetical protein 4332499..4332723 Variovorax paradoxus S110 7974409 YP_002945967.1 CDS Vapar_4088 NC_012791.1 4332796 4334472 D PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; KEGG: pna:Pnap_0960 sulfate transporter; sulfate transporter 4332796..4334472 Variovorax paradoxus S110 7974410 YP_002945968.1 CDS Vapar_4089 NC_012791.1 4334469 4334942 R KEGG: pna:Pnap_0959 lipoprotein; lipoprotein complement(4334469..4334942) Variovorax paradoxus S110 7974411 YP_002945969.1 CDS Vapar_4090 NC_012791.1 4335012 4335218 D KEGG: pol:Bpro_0907 hypothetical protein; hypothetical protein 4335012..4335218 Variovorax paradoxus S110 7974412 YP_002945970.1 CDS Vapar_4091 NC_012791.1 4335287 4336123 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: pol:Bpro_0906 condensin subunit ScpA; chromosome segregation and condensation protein ScpA 4335287..4336123 Variovorax paradoxus S110 7974413 YP_002945971.1 CDS Vapar_4092 NC_012791.1 4336153 4337724 D TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: dia:Dtpsy_2816 L-aspartate oxidase; L-aspartate oxidase 4336153..4337724 Variovorax paradoxus S110 7974414 YP_002945972.1 CDS panB NC_012791.1 4337799 4338692 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 4337799..4338692 Variovorax paradoxus S110 7974415 YP_002945973.1 CDS panC NC_012791.1 4338708 4339559 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 4338708..4339559 Variovorax paradoxus S110 7974416 YP_002945974.1 CDS Vapar_4095 NC_012791.1 4339556 4340194 D KEGG: aav:Aave_3844 hypothetical protein; hypothetical protein 4339556..4340194 Variovorax paradoxus S110 7974417 YP_002945975.1 CDS Vapar_4096 NC_012791.1 4340212 4340574 D PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: vei:Veis_1235 6-pyruvoyl tetrahydropterin synthase; hypothetical protein 4340212..4340574 Variovorax paradoxus S110 7974418 YP_002945976.1 CDS Vapar_4097 NC_012791.1 4340704 4341828 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(4340704..4341828) Variovorax paradoxus S110 7974419 YP_002945977.1 CDS Vapar_4098 NC_012791.1 4341837 4342715 R KEGG: dia:Dtpsy_2821 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(4341837..4342715) Variovorax paradoxus S110 7974420 YP_002945978.1 CDS gpsA NC_012791.1 4342778 4343791 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(4342778..4343791) Variovorax paradoxus S110 7974421 YP_002945979.1 CDS Vapar_4100 NC_012791.1 4343816 4344280 R TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: aav:Aave_3855 preprotein translocase subunit SecB; protein-export protein SecB complement(4343816..4344280) Variovorax paradoxus S110 7974422 YP_002945980.1 CDS Vapar_4101 NC_012791.1 4344409 4344669 R TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: dac:Daci_1815 glutaredoxin 3; glutaredoxin 3 complement(4344409..4344669) Variovorax paradoxus S110 7974423 YP_002945981.1 CDS Vapar_4102 NC_012791.1 4344691 4345107 R PFAM: rhodanese domainprotein; SMART: Rhodanese domain protein; KEGG: pol:Bpro_0887 rhodanese-like; rhodanese domain-containing protein complement(4344691..4345107) Variovorax paradoxus S110 7974424 YP_002945982.1 CDS Vapar_4103 NC_012791.1 4345180 4345923 D KEGG: aav:Aave_3858 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase; phosphoglycerate mutase 1 family 4345180..4345923 Variovorax paradoxus S110 7974425 YP_002945983.1 CDS Vapar_4104 NC_012791.1 4346025 4347470 D KEGG: aav:Aave_3859 C-terminal processing peptidase-3; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease 4346025..4347470 Variovorax paradoxus S110 7974426 YP_002945984.1 CDS Vapar_4105 NC_012791.1 4347505 4348260 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rfr:Rfer_1307 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 4347505..4348260 Variovorax paradoxus S110 7974427 YP_002945985.1 CDS Vapar_4106 NC_012791.1 4348274 4350283 R PFAM: AsmA family protein; KEGG: pol:Bpro_0883 AsmA; AsmA family protein complement(4348274..4350283) Variovorax paradoxus S110 7974428 YP_002945986.1 CDS Vapar_4107 NC_012791.1 4350517 4350930 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like); response regulator receiver protein 4350517..4350930 Variovorax paradoxus S110 7974429 YP_002945987.1 CDS Vapar_4108 NC_012791.1 4350962 4351594 R PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: aav:Aave_3862 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator complement(4350962..4351594) Variovorax paradoxus S110 7974430 YP_002945988.1 CDS Vapar_4109 NC_012791.1 4351726 4353045 D KEGG: pol:Bpro_0880 multi-sensor signal transduction histidine kinase; PFAM: CHASE3 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase 4351726..4353045 Variovorax paradoxus S110 7974431 YP_002945989.1 CDS Vapar_4110 NC_012791.1 4353237 4353401 D PFAM: protein of unknown function DUF1328; KEGG: mpt:Mpe_A2904 hypothetical protein; hypothetical protein 4353237..4353401 Variovorax paradoxus S110 7974432 YP_002945990.1 CDS Vapar_4111 NC_012791.1 4353456 4353830 D KEGG: aav:Aave_3865 hypothetical protein; hypothetical protein 4353456..4353830 Variovorax paradoxus S110 7974433 YP_002945991.1 CDS Vapar_4112 NC_012791.1 4353878 4354261 D KEGG: pna:Pnap_0918 hypothetical protein; hypothetical protein 4353878..4354261 Variovorax paradoxus S110 7974434 YP_002945992.1 CDS Vapar_4113 NC_012791.1 4354248 4354745 D KEGG: pna:Pnap_0917 hypothetical protein; hypothetical protein 4354248..4354745 Variovorax paradoxus S110 7974435 YP_002945993.1 CDS Vapar_4114 NC_012791.1 4354742 4355302 D PFAM: Ferritin Dps family protein; rubrerythrin; KEGG: aav:Aave_3866 ferritin, Dps family protein; Ferritin Dps family protein 4354742..4355302 Variovorax paradoxus S110 7974436 YP_002945994.1 CDS Vapar_4115 NC_012791.1 4355388 4355888 R PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: dia:Dtpsy_1600 transport-associated; transport-associated complement(4355388..4355888) Variovorax paradoxus S110 7974437 YP_002945995.1 CDS Vapar_4116 NC_012791.1 4356020 4356856 R KEGG: pna:Pnap_0914 hypothetical protein; hypothetical protein complement(4356020..4356856) Variovorax paradoxus S110 7974438 YP_002945996.1 CDS Vapar_4117 NC_012791.1 4356859 4357740 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: aav:Aave_3629 hypothetical protein; hypothetical protein complement(4356859..4357740) Variovorax paradoxus S110 7974439 YP_002945997.1 CDS Vapar_4118 NC_012791.1 4357756 4358178 R PFAM: BLUF domain protein; KEGG: pol:Bpro_0870 sensors of blue-light using FAD; BLUF domain-containing protein complement(4357756..4358178) Variovorax paradoxus S110 7974440 YP_002945998.1 CDS Vapar_4119 NC_012791.1 4358181 4358912 R PFAM: GTP cyclohydrolase I; KEGG: pol:Bpro_0869 GTP cyclohydrolase; GTP cyclohydrolase I complement(4358181..4358912) Variovorax paradoxus S110 7974441 YP_002945999.1 CDS Vapar_4120 NC_012791.1 4358977 4359729 R PFAM: endonuclease/exonuclease/phosphatase; KEGG: aav:Aave_3633 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(4358977..4359729) Variovorax paradoxus S110 7974442 YP_002946000.1 CDS Vapar_4121 NC_012791.1 4359726 4360199 R PFAM: NUDIX hydrolase; KEGG: lch:Lcho_4015 NUDIX hydrolase; NUDIX hydrolase complement(4359726..4360199) Variovorax paradoxus S110 7974443 YP_002946001.1 CDS Vapar_4122 NC_012791.1 4360207 4362012 R TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dia:Dtpsy_0803 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase complement(4360207..4362012) Variovorax paradoxus S110 7974444 YP_002946002.1 CDS Vapar_4123 NC_012791.1 4362047 4362667 R PFAM: protein of unknown function DUF502; KEGG: dac:Daci_5454 hypothetical protein; hypothetical protein complement(4362047..4362667) Variovorax paradoxus S110 7974445 YP_002946003.1 CDS Vapar_4124 NC_012791.1 4362678 4363016 R TIGRFAM: regulatory protein, FmdB family; KEGG: aav:Aave_3639 FmdB family regulatory protein; FmdB family regulatory protein complement(4362678..4363016) Variovorax paradoxus S110 7974446 YP_002946004.1 CDS Vapar_4125 NC_012791.1 4363105 4364544 R PFAM: Na+/solute symporter; KEGG: dac:Daci_5457 Na+/solute symporter; Na+/solute symporter complement(4363105..4364544) Variovorax paradoxus S110 7974447 YP_002946005.1 CDS ubiB NC_012791.1 4364557 4366122 R an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB complement(4364557..4366122) Variovorax paradoxus S110 7974448 YP_002946006.1 CDS Vapar_4127 NC_012791.1 4366119 4366691 R KEGG: aav:Aave_3642 hypothetical protein; hypothetical protein complement(4366119..4366691) Variovorax paradoxus S110 7971864 YP_002946007.1 CDS Vapar_4128 NC_012791.1 4366740 4367753 R PFAM: import inner membrane translocase subunit Tim44; KEGG: pna:Pnap_0782 import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 complement(4366740..4367753) Variovorax paradoxus S110 7971865 YP_002946008.1 CDS Vapar_4129 NC_012791.1 4367788 4368519 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: aav:Aave_3644 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase complement(4367788..4368519) Variovorax paradoxus S110 7971866 YP_002946009.1 CDS Vapar_4130 NC_012791.1 4368675 4369088 R PFAM: protein of unknown function DUF971; KEGG: rfr:Rfer_1290 hypothetical protein; hypothetical protein complement(4368675..4369088) Variovorax paradoxus S110 7971867 YP_002946010.1 CDS Vapar_4131 NC_012791.1 4369088 4369525 R PFAM: histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein; histidine triad (HIT) protein complement(4369088..4369525) Variovorax paradoxus S110 7971868 YP_002946011.1 CDS Vapar_4132 NC_012791.1 4369522 4373400 R PFAM: FAD linked oxidase; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pol:Bpro_0858 FAD linked oxidase-like; FAD linked oxidase complement(4369522..4373400) Variovorax paradoxus S110 7971869 YP_002946012.1 CDS Vapar_4133 NC_012791.1 4373607 4374839 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: pna:Pnap_1854 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(4373607..4374839) Variovorax paradoxus S110 7971870 YP_002946013.1 CDS Vapar_4134 NC_012791.1 4375066 4376379 D PFAM: extracellular solute-binding protein family 1; KEGG: aav:Aave_3650 extracellular solute-binding protein; family 1 extracellular solute-binding protein 4375066..4376379 Variovorax paradoxus S110 7971871 YP_002946014.1 CDS Vapar_4135 NC_012791.1 4376479 4377360 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3651 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 4376479..4377360 Variovorax paradoxus S110 7971872 YP_002946015.1 CDS Vapar_4136 NC_012791.1 4377394 4378245 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0855 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 4377394..4378245 Variovorax paradoxus S110 7971873 YP_002946016.1 CDS Vapar_4137 NC_012791.1 4378386 4379393 D PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: aav:Aave_3653 ABC transporter-related protein; ABC transporter 4378386..4379393 Variovorax paradoxus S110 7971874 YP_002946017.1 CDS Vapar_4138 NC_012791.1 4379396 4380145 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dia:Dtpsy_0787 glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 4379396..4380145 Variovorax paradoxus S110 7971875 YP_002946018.1 CDS Vapar_4139 NC_012791.1 4380220 4382667 D PFAM: MscS Mechanosensitive ion channel; KEGG: aav:Aave_3656 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 4380220..4382667 Variovorax paradoxus S110 7971876 YP_002946019.1 CDS Vapar_4140 NC_012791.1 4382793 4383941 D TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: reh:H16_B0252 flagellar biosynthesis protein FlhB; flagellar biosynthetic protein FlhB 4382793..4383941 Variovorax paradoxus S110 7971877 YP_002946020.1 CDS flhA NC_012791.1 4383938 4386031 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 4383938..4386031 Variovorax paradoxus S110 7971878 YP_002946021.1 CDS flhF NC_012791.1 4386028 4388382 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 4386028..4388382 Variovorax paradoxus S110 7971879 YP_002946022.1 CDS Vapar_4143 NC_012791.1 4388379 4389281 D KEGG: bph:Bphy_2961 flagellar biosynthesis protein FlhG; flagellar biosynthesis protein FlhG 4388379..4389281 Variovorax paradoxus S110 7971880 YP_002946023.1 CDS Vapar_4144 NC_012791.1 4389256 4389987 D TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; KEGG: bmn:BMA10247_3132 flagellar biosynthesis sigma factor; RNA polymerase sigma-28 subunit FliA/WhiG 4389256..4389987 Variovorax paradoxus S110 7971881 YP_002946024.1 CDS Vapar_4145 NC_012791.1 4390028 4391074 R KEGG: scl:sce0815 hypothetical protein; hypothetical protein complement(4390028..4391074) Variovorax paradoxus S110 7971882 YP_002946025.1 CDS Vapar_4146 NC_012791.1 4391071 4391901 R hypothetical protein complement(4391071..4391901) Variovorax paradoxus S110 7971883 YP_002946026.1 CDS Vapar_4147 NC_012791.1 4392108 4392548 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rle:RL2545 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(4392108..4392548) Variovorax paradoxus S110 7971884 YP_002946027.1 CDS Vapar_4148 NC_012791.1 4392590 4393018 R PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_B0771 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferaser complement(4392590..4393018) Variovorax paradoxus S110 7971885 YP_002946028.1 CDS Vapar_4149 NC_012791.1 4393055 4393594 R PFAM: protein of unknown function DUF925; KEGG: cvi:CV_4214 hypothetical protein; hypothetical protein complement(4393055..4393594) Variovorax paradoxus S110 7971886 YP_002946029.1 CDS Vapar_4150 NC_012791.1 4393673 4394329 R PFAM: Chemotaxis phosphatase CheZ; KEGG: reh:H16_B0245 chemotaxis regulator CheZ; chemotaxis phosphatase, CheZ complement(4393673..4394329) Variovorax paradoxus S110 7971887 YP_002946030.1 CDS Vapar_4151 NC_012791.1 4394331 4394729 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rme:Rmet_3694 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(4394331..4394729) Variovorax paradoxus S110 7971888 YP_002946031.1 CDS Vapar_4152 NC_012791.1 4394756 4395835 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(4394756..4395835) Variovorax paradoxus S110 7971889 YP_002946032.1 CDS Vapar_4153 NC_012791.1 4395832 4396485 R PFAM: CheD family protein; KEGG: reu:Reut_B5611 chemoreceptor glutamine deamidase CheD; CheD, stimulates methylation of MCP protein complement(4395832..4396485) Variovorax paradoxus S110 7971890 YP_002946033.1 CDS Vapar_4154 NC_012791.1 4396482 4397303 R KEGG: rme:Rmet_3691 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; MCP methyltransferase, CheR-type complement(4396482..4397303) Variovorax paradoxus S110 7971891 YP_002946034.1 CDS Vapar_4155 NC_012791.1 4397316 4398632 R PFAM: metal-dependent hydrolase HDOD; KEGG: har:HEAR1309 hypothetical protein; signal transduction protein complement(4397316..4398632) Variovorax paradoxus S110 7971892 YP_002946035.1 CDS Vapar_4156 NC_012791.1 4398660 4400714 R PFAM: CheY binding; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: rme:Rmet_3689 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(4398660..4400714) Variovorax paradoxus S110 7971893 YP_002946036.1 CDS Vapar_4157 NC_012791.1 4400758 4401705 R PFAM: OmpA/MotB domain protein; KEGG: bbr:BB2544 flagellar motor protein MotB; OmpA/MotB domain-containing protein complement(4400758..4401705) Variovorax paradoxus S110 7971894 YP_002946037.1 CDS Vapar_4158 NC_012791.1 4401724 4402584 R KEGG: rme:Rmet_3687 chemotaxis MotA protein; chemotaxis MotA protein complement(4401724..4402584) Variovorax paradoxus S110 7971895 YP_002946038.1 CDS Vapar_4159 NC_012791.1 4402648 4403256 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC complement(4402648..4403256) Variovorax paradoxus S110 7971896 YP_002946039.1 CDS Vapar_4160 NC_012791.1 4403253 4403609 R PFAM: flagellar transcriptional activator; KEGG: bvi:Bcep1808_0210 transcriptional activator FlhD; flagellar transcriptional activator complement(4403253..4403609) Variovorax paradoxus S110 7971897 YP_002946040.1 CDS Vapar_4161 NC_012791.1 4403793 4404086 R KEGG: reh:H16_B2366 flagellar biosynthesis protein; flagellar biosynthesis protein complement(4403793..4404086) Variovorax paradoxus S110 7971898 YP_002946041.1 CDS Vapar_4162 NC_012791.1 4404083 4405243 R KEGG: bam:Bamb_3105 hypothetical protein; hypothetical protein complement(4404083..4405243) Variovorax paradoxus S110 7971899 YP_002946042.1 CDS Vapar_4163 NC_012791.1 4405268 4405546 R KEGG: bac:BamMC406_2972 hypothetical protein; hypothetical protein complement(4405268..4405546) Variovorax paradoxus S110 7971900 YP_002946043.1 CDS Vapar_4164 NC_012791.1 4405629 4406051 R TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: eca:ECA1729 flagellar protein FliS; flagellar protein FliS complement(4405629..4406051) Variovorax paradoxus S110 7971901 YP_002946044.1 CDS Vapar_4165 NC_012791.1 4406075 4407523 R PFAM: flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook-associated protein 2 domain protein; KEGG: rme:Rmet_5254 flagellar hook-associated 2-like protein; flagellar hook-associated 2 domain-containing protein complement(4406075..4407523) Variovorax paradoxus S110 7971902 YP_002946045.1 CDS Vapar_4166 NC_012791.1 4407677 4408915 R structural flagella protein; flagellin complement(4407677..4408915) Variovorax paradoxus S110 7971903 YP_002946046.1 CDS Vapar_4167 NC_012791.1 4409082 4409399 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: reh:H16_B2367 flagellar hook-basal body complex protein; flagellar hook-basal body complex subunit FliE complement(4409082..4409399) Variovorax paradoxus S110 7971904 YP_002946047.1 CDS fliF NC_012791.1 4409692 4411374 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 4409692..4411374 Variovorax paradoxus S110 7971905 YP_002946048.1 CDS Vapar_4169 NC_012791.1 4411371 4412366 D TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: cti:RALTA_B2145 FliG: flagellar biosynthesis protein; motor switch protein; flagellar motor switch protein FliG 4411371..4412366 Variovorax paradoxus S110 7971906 YP_002946049.1 CDS Vapar_4170 NC_012791.1 4412353 4413066 D PFAM: flagellar assembly protein FliH; KEGG: rme:Rmet_5263 flagellar assembly protein H; flagellar assembly protein FliH 4412353..4413066 Variovorax paradoxus S110 7971907 YP_002946050.1 CDS Vapar_4171 NC_012791.1 4413071 4414507 D KEGG: reu:Reut_B5100 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; SMART: ATPase AAA; FliI/YscN family ATPase 4413071..4414507 Variovorax paradoxus S110 7971908 YP_002946051.1 CDS Vapar_4172 NC_012791.1 4414534 4414989 D TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: bpt:Bpet2143 flagellar biosynthesis chaperone FliJ; flagellar export protein FliJ 4414534..4414989 Variovorax paradoxus S110 7971909 YP_002946052.1 CDS Vapar_4173 NC_012791.1 4414995 4416353 D PFAM: flagellar hook-length control protein; KEGG: reh:H16_B2373 flagellar hook-length control protein; flagellar hook-length control protein 4414995..4416353 Variovorax paradoxus S110 7971910 YP_002946053.1 CDS Vapar_4174 NC_012791.1 4416461 4416958 D PFAM: flagellar basal body-associated protein FliL; KEGG: reh:H16_B0567 flagellar basal body-associated protein; flagellar basal body-associated protein FliL 4416461..4416958 Variovorax paradoxus S110 7971911 YP_002946054.1 CDS Vapar_4175 NC_012791.1 4416980 4417981 D TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: rme:Rmet_5298 flagellar motor switch protein FliM; flagellar motor switch protein FliM 4416980..4417981 Variovorax paradoxus S110 7971912 YP_002946055.1 CDS Vapar_4176 NC_012791.1 4417974 4418441 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: bpt:Bpet2139 flagellar motor switch protein FliN; flagellar motor switch protein FliN 4417974..4418441 Variovorax paradoxus S110 7971913 YP_002946056.1 CDS Vapar_4177 NC_012791.1 4418438 4418926 D PFAM: flagellar biosynthesis protein FliO; KEGG: reu:Reut_B5882 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein FliO 4418438..4418926 Variovorax paradoxus S110 7971914 YP_002946057.1 CDS Vapar_4178 NC_012791.1 4418923 4419684 D TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: reu:Reut_B5881 flagellar biosynthesis protein FliP; flagellar biosynthetic protein FliP 4418923..4419684 Variovorax paradoxus S110 7971915 YP_002946058.1 CDS Vapar_4179 NC_012791.1 4419694 4419963 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: efe:EFER_1934 flagellar biosynthesis protein; flagellar biosynthetic protein FliQ 4419694..4419963 Variovorax paradoxus S110 7971916 YP_002946059.1 CDS Vapar_4180 NC_012791.1 4419976 4420770 D TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: reh:H16_B0561 flagellar biosynthesis protein; flagellar biosynthetic protein FliR 4419976..4420770 Variovorax paradoxus S110 7971917 YP_002946060.1 CDS flgL NC_012791.1 4420790 4422001 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL complement(4420790..4422001) Variovorax paradoxus S110 7971918 YP_002946061.1 CDS flgK NC_012791.1 4422042 4424000 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(4422042..4424000) Variovorax paradoxus S110 7971919 YP_002946062.1 CDS Vapar_4183 NC_012791.1 4424110 4425660 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: mms:mma_0314 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4424110..4425660) Variovorax paradoxus S110 7971920 YP_002946063.1 CDS Vapar_4184 NC_012791.1 4425699 4427741 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dia:Dtpsy_3481 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4425699..4427741) Variovorax paradoxus S110 7971921 YP_002946064.1 CDS Vapar_4185 NC_012791.1 4427764 4429503 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: cti:RALTA_B0243 MCP: methyl-accepting chemotaxis protein, chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4427764..4429503) Variovorax paradoxus S110 7971922 YP_002946065.1 CDS Vapar_4186 NC_012791.1 4429525 4431258 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dia:Dtpsy_0178 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4429525..4431258) Variovorax paradoxus S110 7971923 YP_002946066.1 CDS Vapar_4187 NC_012791.1 4431339 4431854 R PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: mms:mma_2094 CheW purine-binding chemotaxis protein; CheW protein complement(4431339..4431854) Variovorax paradoxus S110 7971924 YP_002946067.1 CDS Vapar_4188 NC_012791.1 4431875 4433575 R PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: aav:Aave_2643 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(4431875..4433575) Variovorax paradoxus S110 7971925 YP_002946068.1 CDS Vapar_4189 NC_012791.1 4433662 4435341 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: mms:mma_0161 methyl-accepting chemotaxis transducer transmembrane protein; methyl-accepting chemotaxis sensory transducer complement(4433662..4435341) Variovorax paradoxus S110 7971926 YP_002946069.1 CDS Vapar_4190 NC_012791.1 4435366 4435875 R PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: mms:mma_2094 CheW purine-binding chemotaxis protein; CheW protein complement(4435366..4435875) Variovorax paradoxus S110 7971927 YP_002946070.1 CDS Vapar_4191 NC_012791.1 4435886 4436869 R KEGG: rme:Rmet_3742 peptidoglycan hydrolase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ complement(4435886..4436869) Variovorax paradoxus S110 7971928 YP_002946071.1 CDS Vapar_4192 NC_012791.1 4436878 4438011 R PFAM: flagellar P-ring protein; KEGG: reu:Reut_B5632 flagellar basal body P-ring protein; flagellar P-ring protein complement(4436878..4438011) Variovorax paradoxus S110 7971929 YP_002946072.1 CDS Vapar_4193 NC_012791.1 4438011 4438694 R PFAM: flagellar L-ring protein; KEGG: cti:RALTA_B0283 FlgH: flagellar L-ring protein ; signal peptide; flagellar L-ring protein complement(4438011..4438694) Variovorax paradoxus S110 7971930 YP_002946073.1 CDS Vapar_4194 NC_012791.1 4438691 4439473 R TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: reu:Reut_B5630 flagellar basal body rod protein FlgG; flagellar basal-body rod protein FlgG complement(4438691..4439473) Variovorax paradoxus S110 7971931 YP_002946074.1 CDS flgF NC_012791.1 4439514 4440260 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF complement(4439514..4440260) Variovorax paradoxus S110 7971932 YP_002946075.1 CDS Vapar_4196 NC_012791.1 4440268 4441482 R PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cti:RALTA_B0280 FlgE: flagellar hook protein; flagellar basal body FlaE domain-containing protein complement(4440268..4441482) Variovorax paradoxus S110 7971933 YP_002946076.1 CDS Vapar_4197 NC_012791.1 4441575 4442261 R PFAM: flagellar hook capping protein; KEGG: reu:Reut_B5627 flagellar basal body rod modification protein; flagellar hook capping protein complement(4441575..4442261) Variovorax paradoxus S110 7971934 YP_002946077.1 CDS Vapar_4198 NC_012791.1 4442285 4442701 R TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: bav:BAV1689 flagellar basal-body rod protein; flagellar basal-body rod protein FlgC complement(4442285..4442701) Variovorax paradoxus S110 7971935 YP_002946078.1 CDS Vapar_4199 NC_012791.1 4442719 4443129 R TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: eta:ETA_20410 flagellar basal-body rod protein; flagellar basal-body rod protein FlgB complement(4442719..4443129) Variovorax paradoxus S110 7971936 YP_002946079.1 CDS Vapar_4200 NC_012791.1 4443296 4444009 D TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: cti:RALTA_B0276 FlgA: flagella basal body P-ring formation protein ; signal peptide; flagella basal body P-ring formation protein FlgA 4443296..4444009 Variovorax paradoxus S110 7971937 YP_002946080.1 CDS Vapar_4201 NC_012791.1 4444196 4444381 D PFAM: anti-sigma-28 factor FlgM family protein; KEGG: bph:Bphy_2946 anti-sigma-28 factor, FlgM; anti-sigma-28 factor,FlgM 4444196..4444381 Variovorax paradoxus S110 7971938 YP_002946081.1 CDS Vapar_4202 NC_012791.1 4444387 4444833 D PFAM: FlgN family protein; KEGG: bmj:BMULJ_00209 flagella synthesis protein; FlgN family protein 4444387..4444833 Variovorax paradoxus S110 7971939 YP_002946082.1 CDS Vapar_4203 NC_012791.1 4444843 4445613 R PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: tmz:Tmz1t_1763 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator complement(4444843..4445613) Variovorax paradoxus S110 7971940 YP_002946083.1 CDS Vapar_4204 NC_012791.1 4445768 4446043 R KEGG: ajs:Ajs_0853 hypothetical protein; hypothetical protein complement(4445768..4446043) Variovorax paradoxus S110 7971941 YP_002946084.1 CDS hemA NC_012791.1 4446178 4447449 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 4446178..4447449 Variovorax paradoxus S110 7971942 YP_002946085.1 CDS prfA NC_012791.1 4447551 4448639 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 4447551..4448639 Variovorax paradoxus S110 7971943 YP_002946086.1 CDS Vapar_4207 NC_012791.1 4448636 4449487 D KEGG: vei:Veis_1555 HemK family modification methylase; TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; HemK family modification methylase 4448636..4449487 Variovorax paradoxus S110 7971944 YP_002946087.1 CDS Vapar_4208 NC_012791.1 4449517 4449849 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: dia:Dtpsy_0778 glutaredoxin-like protein; glutaredoxin-like protein 4449517..4449849 Variovorax paradoxus S110 7973225 YP_002946088.1 CDS Vapar_4209 NC_012791.1 4449864 4450364 D PFAM: cupin; Cupin domain protein; KEGG: pol:Bpro_3463 cupin 2, conserved barrel; cupin 4449864..4450364 Variovorax paradoxus S110 7971292 YP_002946089.1 CDS Vapar_4210 NC_012791.1 4450510 4451793 D PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: pna:Pnap_0743 hypothetical protein; hypothetical protein 4450510..4451793 Variovorax paradoxus S110 7971293 YP_002946090.1 CDS Vapar_4211 NC_012791.1 4451801 4452460 R PFAM: lytic transglycosylase catalytic; KEGG: aav:Aave_3669 lytic transglycosylase, catalytic; lytic transglycosylase complement(4451801..4452460) Variovorax paradoxus S110 7971294 YP_002946091.1 CDS Vapar_4212 NC_012791.1 4452457 4454202 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(4452457..4454202) Variovorax paradoxus S110 7971295 YP_002946092.1 CDS Vapar_4213 NC_012791.1 4454349 4455020 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 4454349..4455020 Variovorax paradoxus S110 7971296 YP_002946093.1 CDS Vapar_4214 NC_012791.1 4455037 4455567 D PFAM: protein of unknown function CNP1-like; KEGG: rfr:Rfer_1272 hypothetical protein; hypothetical protein 4455037..4455567 Variovorax paradoxus S110 7971297 YP_002946094.1 CDS Vapar_4215 NC_012791.1 4455633 4456772 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(4455633..4456772) Variovorax paradoxus S110 7971298 YP_002946095.1 CDS obgE NC_012791.1 4456811 4457899 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(4456811..4457899) Variovorax paradoxus S110 7971299 YP_002946096.1 CDS rpmA NC_012791.1 4457970 4458227 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(4457970..4458227) Variovorax paradoxus S110 7971300 YP_002946097.1 CDS Vapar_4218 NC_012791.1 4458240 4458551 R TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: aav:Aave_3675 50S ribosomal protein L21P; 50S ribosomal protein L21 complement(4458240..4458551) Variovorax paradoxus S110 7971301 YP_002946098.1 CDS Vapar_4219 NC_012791.1 4458695 4459732 D PFAM: polyprenyl synthetase; KEGG: dia:Dtpsy_0769 polyprenyl synthetase; trans-hexaprenyltranstransferase 4458695..4459732 Variovorax paradoxus S110 7971302 YP_002946099.1 CDS Vapar_4220 NC_012791.1 4459972 4461705 D KEGG: aav:Aave_3680 type IV-A pilus assembly ATPase PilB; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; general secretory system protein E; SMART: ATPase AAA; type IV-A pilus assembly ATPase PilB 4459972..4461705 Variovorax paradoxus S110 7971304 YP_002946100.1 CDS Vapar_4221 NC_012791.1 4461735 4462964 D PFAM: type II secretion system protein; KEGG: ajs:Ajs_0804 type II secretion system protein; type II secretion system protein 4461735..4462964 Variovorax paradoxus S110 7971305 YP_002946101.1 CDS Vapar_4222 NC_012791.1 4462964 4463929 D PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: mpt:Mpe_A0507 signal peptidase; Prepilin peptidase 4462964..4463929 Variovorax paradoxus S110 7971306 YP_002946102.1 CDS Vapar_4223 NC_012791.1 4463940 4464545 D KEGG: lch:Lcho_0547 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 4463940..4464545 Variovorax paradoxus S110 7971307 YP_002946103.1 CDS Vapar_4224 NC_012791.1 4464624 4466117 D PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: mca:MCA0615 alginate O-acetyltransferase; membrane bound O-acyl transferase MBOAT family protein 4464624..4466117 Variovorax paradoxus S110 7971308 YP_002946104.1 CDS Vapar_4225 NC_012791.1 4466124 4467143 D KEGG: mca:MCA0616 hypothetical protein; hypothetical protein 4466124..4467143 Variovorax paradoxus S110 7971309 YP_002946105.1 CDS Vapar_4226 NC_012791.1 4467180 4467935 D PFAM: protein of unknown function DUF1342; KEGG: pol:Bpro_0845 hypothetical protein; hypothetical protein 4467180..4467935 Variovorax paradoxus S110 7971310 YP_002946106.1 CDS Vapar_4227 NC_012791.1 4467997 4468209 D PFAM: protein of unknown function DUF329; KEGG: pol:Bpro_0846 protein of unknown function DUF329; hypothetical protein 4467997..4468209 Variovorax paradoxus S110 7971311 YP_002946107.1 CDS Vapar_4228 NC_012791.1 4468215 4470170 R PFAM: acyltransferase 3; KEGG: sus:Acid_1188 acyltransferase 3; acyltransferase 3 complement(4468215..4470170) Variovorax paradoxus S110 7971312 YP_002946108.1 CDS Vapar_4229 NC_012791.1 4470232 4470684 R PFAM: NUDIX hydrolase; KEGG: dac:Daci_5494 NUDIX hydrolase; NUDIX hydrolase complement(4470232..4470684) Variovorax paradoxus S110 7971313 YP_002946109.1 CDS Vapar_4230 NC_012791.1 4470681 4471556 R PFAM: protein of unknown function DUF815; KEGG: aav:Aave_3687 hypothetical protein; hypothetical protein complement(4470681..4471556) Variovorax paradoxus S110 7971314 YP_002946110.1 CDS Vapar_4231 NC_012791.1 4471553 4472782 R KEGG: aav:Aave_3688 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ complement(4471553..4472782) Variovorax paradoxus S110 7971315 YP_002946111.1 CDS Vapar_4232 NC_012791.1 4472813 4475605 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(4472813..4475605) Variovorax paradoxus S110 7971316 YP_002946112.1 CDS Vapar_4233 NC_012791.1 4475801 4476109 D KEGG: aav:Aave_3691 hypothetical protein; hypothetical protein 4475801..4476109 Variovorax paradoxus S110 7971317 YP_002946113.1 CDS Vapar_4234 NC_012791.1 4476150 4477136 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B0302 probable extra-cytoplasmic solute receptor; hypothetical protein complement(4476150..4477136) Variovorax paradoxus S110 7971318 YP_002946114.1 CDS Vapar_4235 NC_012791.1 4477169 4478368 R PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cti:RALTA_B1800 pyridoxal-5'-phosphate-dependent enzyme, beta family; threonine synthase; pyridoxal-5'-phosphate-dependent protein subunit beta complement(4477169..4478368) Variovorax paradoxus S110 7971319 YP_002946115.1 CDS Vapar_4236 NC_012791.1 4478469 4479389 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcj:BCAM0464 LysR family regulatory protein; LysR family transcriptional regulator 4478469..4479389 Variovorax paradoxus S110 7971320 YP_002946116.1 CDS Vapar_4237 NC_012791.1 4479418 4480014 R KEGG: bav:BAV0737 exported protein; hypothetical protein complement(4479418..4480014) Variovorax paradoxus S110 7971321 YP_002946117.1 CDS Vapar_4238 NC_012791.1 4480213 4481283 R PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: pna:Pnap_0979 response regulator receiver protein; two component LuxR family transcriptional regulator complement(4480213..4481283) Variovorax paradoxus S110 7971322 YP_002946118.1 CDS Vapar_4239 NC_012791.1 4481296 4484931 R PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: aav:Aave_3525 integral membrane sensor hybrid histidine kinase; histidine kinase complement(4481296..4484931) Variovorax paradoxus S110 7971323 YP_002946119.1 CDS ureA NC_012791.1 4485038 4485340 D UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 4485038..4485340 Variovorax paradoxus S110 7971324 YP_002946120.1 CDS Vapar_4241 NC_012791.1 4485370 4485969 D PFAM: HupE/UreJ protein; KEGG: aav:Aave_3527 HupE/UreJ protein; HupE/UreJ protein 4485370..4485969 Variovorax paradoxus S110 7971325 YP_002946121.1 CDS Vapar_4242 NC_012791.1 4485978 4486283 D KEGG: pna:Pnap_0975 urease subunit beta; TIGRFAM: urease, subunit beta; PFAM: Urease subunit beta; urease subunit beta 4485978..4486283 Variovorax paradoxus S110 7971326 YP_002946122.1 CDS ureC NC_012791.1 4486287 4488005 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 4486287..4488005 Variovorax paradoxus S110 7971327 YP_002946123.1 CDS Vapar_4244 NC_012791.1 4488009 4488413 R TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: rfr:Rfer_3404 death-on-curing protein; death-on-curing family protein complement(4488009..4488413) Variovorax paradoxus S110 7971328 YP_002946124.1 CDS Vapar_4245 NC_012791.1 4488410 4488637 R TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: mno:Mnod_8344 addiction module antidote; addiction module antidote complement(4488410..4488637) Variovorax paradoxus S110 7971329 YP_002946125.1 CDS Vapar_4246 NC_012791.1 4488709 4489290 D PFAM: UreE urease accessory domain protein; KEGG: aav:Aave_3531 UreE urease accessory domain-containing protein; UreE urease accessory domain-containing protein 4488709..4489290 Variovorax paradoxus S110 7971330 YP_002946126.1 CDS Vapar_4247 NC_012791.1 4489621 4490292 D PFAM: Urease accessory protein UreF; KEGG: pol:Bpro_1348 urease accessory protein UreF; Urease accessory protein UreF 4489621..4490292 Variovorax paradoxus S110 7971331 YP_002946127.1 CDS Vapar_4248 NC_012791.1 4490311 4490961 D TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: aav:Aave_3533 urease accessory protein UreG; urease accessory protein UreG 4490311..4490961 Variovorax paradoxus S110 7971332 YP_002946128.1 CDS Vapar_4249 NC_012791.1 4490971 4491510 R KEGG: rfr:Rfer_1148 hypothetical protein; hypothetical protein complement(4490971..4491510) Variovorax paradoxus S110 7971333 YP_002946129.1 CDS Vapar_4250 NC_012791.1 4491590 4492213 R KEGG: afw:Anae109_2387 histidine kinase; hypothetical protein complement(4491590..4492213) Variovorax paradoxus S110 7971334 YP_002946130.1 CDS Vapar_4251 NC_012791.1 4492227 4492511 R KEGG: DIAPH3; diaphanous homolog 3 (Drosophila) ; K05745 diaphanous 3; hypothetical protein complement(4492227..4492511) Variovorax paradoxus S110 7971335 YP_002946131.1 CDS Vapar_4252 NC_012791.1 4492589 4493746 R KEGG: vei:Veis_4644 porin; porin complement(4492589..4493746) Variovorax paradoxus S110 7971336 YP_002946132.1 CDS Vapar_4253 NC_012791.1 4493948 4494616 D KEGG: pna:Pnap_4223 hypothetical protein; hypothetical protein 4493948..4494616 Variovorax paradoxus S110 7971337 YP_002946133.1 CDS Vapar_4254 NC_012791.1 4494691 4497093 D TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dac:Daci_4940 outer membrane protein assembly complex, YaeT protein; outer membrane protein assembly complex, YaeT protein 4494691..4497093 Variovorax paradoxus S110 7971338 YP_002946134.1 CDS Vapar_4255 NC_012791.1 4497110 4497790 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: dac:Daci_3145 two component transcriptional regulator; winged helix family two component transcriptional regulator 4497110..4497790 Variovorax paradoxus S110 7971339 YP_002946135.1 CDS Vapar_4256 NC_012791.1 4497751 4498032 R hypothetical protein complement(4497751..4498032) Variovorax paradoxus S110 7971340 YP_002946136.1 CDS Vapar_4257 NC_012791.1 4498029 4498364 R hypothetical protein complement(4498029..4498364) Variovorax paradoxus S110 7971341 YP_002946137.1 CDS Vapar_4258 NC_012791.1 4498463 4500052 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dia:Dtpsy_0978 histidine kinase; histidine kinase 4498463..4500052 Variovorax paradoxus S110 7971342 YP_002946138.1 CDS Vapar_4259 NC_012791.1 4500049 4500741 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: aav:Aave_1493 two component transcriptional regulator; winged helix family two component transcriptional regulator 4500049..4500741 Variovorax paradoxus S110 7971343 YP_002946139.1 CDS Vapar_4260 NC_012791.1 4500873 4501319 D PFAM: UspA domain protein; KEGG: rfr:Rfer_1926 hypothetical protein; UspA domain-containing protein 4500873..4501319 Variovorax paradoxus S110 7971344 YP_002946140.1 CDS Vapar_4261 NC_012791.1 4501513 4503522 D PFAM: AsmA family protein; KEGG: mms:mma_3643 AsmA protein; AsmA family protein 4501513..4503522 Variovorax paradoxus S110 7971345 YP_002946141.1 CDS Vapar_4262 NC_012791.1 4503561 4503818 R KEGG: nar:Saro_2649 general secretion pathway L; general secretion pathway L complement(4503561..4503818) Variovorax paradoxus S110 7971346 YP_002946142.1 CDS Vapar_4263 NC_012791.1 4503847 4504092 R hypothetical protein complement(4503847..4504092) Variovorax paradoxus S110 7971347 YP_002946143.1 CDS Vapar_4264 NC_012791.1 4504085 4504492 R KEGG: acr:Acry_1738 response regulator receiver protein; hypothetical protein complement(4504085..4504492) Variovorax paradoxus S110 7971348 YP_002946144.1 CDS Vapar_4265 NC_012791.1 4504551 4504691 R KEGG: bcm:Bcenmc03_6453 lipoprotein; lipoprotein complement(4504551..4504691) Variovorax paradoxus S110 7971349 YP_002946145.1 CDS Vapar_4266 NC_012791.1 4505014 4505295 D PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: mca:MCA0532 DNA-binding protein HU-beta; histone family protein DNA-binding protein 4505014..4505295 Variovorax paradoxus S110 7971350 YP_002946146.1 CDS Vapar_4267 NC_012791.1 4505317 4508724 R KEGG: bpl:BURPS1106A_A0996 glycosyl transferase, group 2 family protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: glycosyl transferase family 2; outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein complement(4505317..4508724) Variovorax paradoxus S110 7971351 YP_002946147.1 CDS Vapar_4268 NC_012791.1 4508712 4510061 R KEGG: reu:Reut_B5235 hypothetical protein; hypothetical protein complement(4508712..4510061) Variovorax paradoxus S110 7971352 YP_002946148.1 CDS Vapar_4269 NC_012791.1 4510105 4511406 R KEGG: reu:Reut_B5234 hypothetical protein; hypothetical protein complement(4510105..4511406) Variovorax paradoxus S110 7971353 YP_002946149.1 CDS Vapar_4270 NC_012791.1 4511877 4512776 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gur:Gura_3006 methyltransferase type 11; type 11 methyltransferase complement(4511877..4512776) Variovorax paradoxus S110 7971354 YP_002946150.1 CDS Vapar_4271 NC_012791.1 4512946 4513704 R PFAM: enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_3772 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(4512946..4513704) Variovorax paradoxus S110 7971355 YP_002946151.1 CDS Vapar_4272 NC_012791.1 4513701 4514882 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_3771 formyl-CoA transferase; Formyl-CoA transferase complement(4513701..4514882) Variovorax paradoxus S110 7971356 YP_002946152.1 CDS Vapar_4273 NC_012791.1 4514887 4515861 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_3770 hypothetical protein; hypothetical protein complement(4514887..4515861) Variovorax paradoxus S110 7971357 YP_002946153.1 CDS Vapar_4274 NC_012791.1 4515995 4516888 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_3769 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4515995..4516888) Variovorax paradoxus S110 7971358 YP_002946154.1 CDS Vapar_4275 NC_012791.1 4516908 4517615 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_0549 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4516908..4517615) Variovorax paradoxus S110 7971359 YP_002946155.1 CDS Vapar_4276 NC_012791.1 4517679 4518434 R PFAM: Asp/Glu/hydantoin racemase; KEGG: pol:Bpro_0552 Asp/Glu racemase; Asp/Glu/hydantoin racemase complement(4517679..4518434) Variovorax paradoxus S110 7971360 YP_002946156.1 CDS Vapar_4277 NC_012791.1 4518457 4519884 R catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase complement(4518457..4519884) Variovorax paradoxus S110 7971361 YP_002946157.1 CDS Vapar_4278 NC_012791.1 4519940 4520668 R PFAM: Asp/Glu/hydantoin racemase; KEGG: rme:Rmet_3887 Asp/Glu racemase; Asp/Glu/hydantoin racemase complement(4519940..4520668) Variovorax paradoxus S110 7971362 YP_002946158.1 CDS Vapar_4279 NC_012791.1 4520677 4521879 R PFAM: beta-lactamase; KEGG: reu:Reut_A0047 beta-lactamase; beta-lactamase complement(4520677..4521879) Variovorax paradoxus S110 7971363 YP_002946159.1 CDS Vapar_4280 NC_012791.1 4521909 4523228 R PFAM: major facilitator superfamily MFS_1; KEGG: rpi:Rpic_4020 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(4521909..4523228) Variovorax paradoxus S110 7971364 YP_002946160.1 CDS Vapar_4282 NC_012791.1 4524005 4525795 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(4524005..4525795) Variovorax paradoxus S110 7971366 YP_002946161.1 CDS Vapar_4283 NC_012791.1 4526063 4526593 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bbr:BB0268 MarR family transcriptional regulator; MarR family transcriptional regulator complement(4526063..4526593) Variovorax paradoxus S110 7971367 YP_002946162.1 CDS Vapar_4284 NC_012791.1 4526678 4527484 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: reh:H16_B0812 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold protein complement(4526678..4527484) Variovorax paradoxus S110 7971368 YP_002946163.1 CDS Vapar_4285 NC_012791.1 4527606 4528823 R PFAM: [2Fe-2S]-binding domain protein; carbon monoxide dehydrogenase subunit G; ferredoxin; KEGG: bbr:BB0283 iron-sulfur binding protein; (2Fe-2S)-binding domain-containing protein complement(4527606..4528823) Variovorax paradoxus S110 7971369 YP_002946164.1 CDS Vapar_4286 NC_012791.1 4528830 4529681 R PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: reu:Reut_B3791 molybdopterin dehydrogenase, FAD-binding; FAD-binding molybdopterin dehydrogenase complement(4528830..4529681) Variovorax paradoxus S110 7971370 YP_002946165.1 CDS Vapar_4287 NC_012791.1 4529678 4532059 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: bbr:BB0281 oxidoreductase, large chain; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(4529678..4532059) Variovorax paradoxus S110 7971371 YP_002946166.1 CDS Vapar_4288 NC_012791.1 4532527 4532844 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bbr:BB0279 ferredoxin; Rieske (2Fe-2S) domain-containing protein 4532527..4532844 Variovorax paradoxus S110 7971372 YP_002946167.1 CDS Vapar_4289 NC_012791.1 4532841 4534094 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bpe:BP0585 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4532841..4534094 Variovorax paradoxus S110 7970476 YP_002946168.1 CDS Vapar_4290 NC_012791.1 4534124 4535431 D PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, subunit alpha-like; KEGG: bbr:BB0277 ring hydroxylating subunit alpha; Rieske (2Fe-2S) domain-containing protein 4534124..4535431 Variovorax paradoxus S110 7970477 YP_002946169.1 CDS Vapar_4291 NC_012791.1 4535428 4535943 D PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: bbr:BB0276 ring hydroxylating subunit beta; aromatic-ring-hydroxylating dioxygenase subunit beta 4535428..4535943 Variovorax paradoxus S110 7970478 YP_002946170.1 CDS Vapar_4292 NC_012791.1 4535961 4536956 D PFAM: amidohydrolase 2; KEGG: reh:H16_B0810 amidohydrolase family protein; amidohydrolase 2 4535961..4536956 Variovorax paradoxus S110 7970479 YP_002946171.1 CDS Vapar_4293 NC_012791.1 4536980 4538023 D KEGG: reu:Reut_B3788 hypothetical protein; hypothetical protein 4536980..4538023 Variovorax paradoxus S110 7970480 YP_002946172.1 CDS Vapar_4294 NC_012791.1 4538020 4538661 D PFAM: isochorismatase hydrolase; KEGG: bpe:BP1958 isochorismatase; isochorismatase hydrolase 4538020..4538661 Variovorax paradoxus S110 7970481 YP_002946173.1 CDS Vapar_4295 NC_012791.1 4538742 4539920 D PFAM: extracellular ligand-binding receptor; KEGG: rle:RL3906 solute-binding component of ABC transporter; extracellular ligand-binding receptor 4538742..4539920 Variovorax paradoxus S110 7970482 YP_002946174.1 CDS Vapar_4296 NC_012791.1 4539936 4540805 D PFAM: inner-membrane translocator; KEGG: bcs:BCAN_B0649 hypothetical protein; inner-membrane translocator 4539936..4540805 Variovorax paradoxus S110 7970483 YP_002946175.1 CDS Vapar_4297 NC_012791.1 4540802 4541815 D PFAM: inner-membrane translocator; KEGG: vei:Veis_1363 inner-membrane translocator; inner-membrane translocator 4540802..4541815 Variovorax paradoxus S110 7970484 YP_002946176.1 CDS Vapar_4298 NC_012791.1 4541812 4542576 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003686 probable branched-chain amino acid ABC transporter ATP-binding protein; ABC transporter 4541812..4542576 Variovorax paradoxus S110 7970485 YP_002946177.1 CDS Vapar_4299 NC_012791.1 4542557 4543279 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azc:AZC_1436 branched-chain amino acid ABC transporter ATP-binding protein; ABC transporter 4542557..4543279 Variovorax paradoxus S110 7970486 YP_002946178.1 CDS Vapar_4300 NC_012791.1 4543316 4544557 D PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_1554 major facilitator transporter; major facilitator superfamily protein 4543316..4544557 Variovorax paradoxus S110 7970487 YP_002946179.1 CDS Vapar_4301 NC_012791.1 4544583 4545455 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: swi:Swit_1725 LysR family transcriptional regulator; LysR family transcriptional regulator 4544583..4545455 Variovorax paradoxus S110 7970488 YP_002946180.1 CDS Vapar_4302 NC_012791.1 4545477 4546337 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: kpe:KPK_B0017 hypothetical protein; hypothetical protein complement(4545477..4546337) Variovorax paradoxus S110 7970489 YP_002946181.1 CDS Vapar_4303 NC_012791.1 4546337 4547215 R PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: kpe:KPK_B0016 RpiR family transcriptional regulator; RpiR family transcriptional regulator complement(4546337..4547215) Variovorax paradoxus S110 7970490 YP_002946182.1 CDS Vapar_4304 NC_012791.1 4547304 4548200 D KEGG: bmj:BMULJ_05446 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 4547304..4548200 Variovorax paradoxus S110 7970491 YP_002946183.1 CDS Vapar_4305 NC_012791.1 4548309 4549292 R PFAM: conserved hypothetical protein; KEGG: cti:RALTA_B1327 conserved hypothetical protein; exported protein; UPF0065; hypothetical protein complement(4548309..4549292) Variovorax paradoxus S110 7970492 YP_002946184.1 CDS Vapar_4306 NC_012791.1 4549412 4550188 R PFAM: enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_4267 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(4549412..4550188) Variovorax paradoxus S110 7970493 YP_002946185.1 CDS Vapar_4307 NC_012791.1 4550198 4551388 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet0470 acyl-CoA transferases/carnitine dehydratase family protein; L-carnitine dehydratase/bile acid-inducible protein F complement(4550198..4551388) Variovorax paradoxus S110 7970494 YP_002946186.1 CDS Vapar_4308 NC_012791.1 4551437 4552216 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mno:Mnod_3482 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(4551437..4552216) Variovorax paradoxus S110 7970495 YP_002946187.1 CDS Vapar_4309 NC_012791.1 4552227 4553363 R PFAM: thiolase; KEGG: reh:H16_B1903 probable lipid-transfer protein; Propanoyl-CoA C-acyltransferase complement(4552227..4553363) Variovorax paradoxus S110 7970496 YP_002946188.1 CDS Vapar_4310 NC_012791.1 4553365 4553724 R PFAM: protein of unknown function DUF35; KEGG: mno:Mnod_3484 protein of unknown function DUF35; hypothetical protein complement(4553365..4553724) Variovorax paradoxus S110 7970497 YP_002946189.1 CDS Vapar_4311 NC_012791.1 4553912 4555057 D PFAM: protein of unknown function DUF453; KEGG: rsk:RSKD131_4240 methylitaconate delta2-delta3-isomerase; hypothetical protein 4553912..4555057 Variovorax paradoxus S110 7970498 YP_002946190.1 CDS Vapar_4312 NC_012791.1 4555087 4555863 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cak:Caul_3063 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4555087..4555863 Variovorax paradoxus S110 7970499 YP_002946191.1 CDS Vapar_4313 NC_012791.1 4555913 4556707 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: smt:Smal_2252 AraC family transcriptional regulator; AraC family transcriptional regulator complement(4555913..4556707) Variovorax paradoxus S110 7970500 YP_002946192.1 CDS Vapar_4314 NC_012791.1 4556871 4557635 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ajs:Ajs_3085 IstB ATP binding domain-containing protein; IstB domain-containing protein ATP-binding protein complement(4556871..4557635) Variovorax paradoxus S110 7970501 YP_002946193.1 CDS Vapar_4315 NC_012791.1 4557632 4559245 R PFAM: Integrase catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit complement(4557632..4559245) Variovorax paradoxus S110 7970502 YP_002946194.1 CDS Vapar_4316 NC_012791.1 4559690 4561708 D PFAM: Fusaric acid resistance protein conserved region; KEGG: bbr:BB3081 hypothetical protein; fusaric acid resistance protein 4559690..4561708 Variovorax paradoxus S110 7970503 YP_002946195.1 CDS Vapar_4317 NC_012791.1 4561705 4561917 D PFAM: protein of unknown function DUF1656; KEGG: bav:BAV2023 component of multidrug efflux system; hypothetical protein 4561705..4561917 Variovorax paradoxus S110 7970504 YP_002946196.1 CDS Vapar_4318 NC_012791.1 4561938 4562921 D PFAM: secretion protein HlyD family protein; KEGG: bpt:Bpet2608 HlyD family secretion protein; secretion protein HlyD family protein 4561938..4562921 Variovorax paradoxus S110 7970505 YP_002946197.1 CDS Vapar_4319 NC_012791.1 4562927 4564378 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bav:BAV2025 outer membrane multidrug efflux protein; NodT family RND efflux system outer membrane lipoprotein 4562927..4564378 Variovorax paradoxus S110 7970506 YP_002946198.1 CDS Vapar_4320 NC_012791.1 4564465 4565370 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_7085 LysR family transcriptional regulator; LysR family transcriptional regulator 4564465..4565370 Variovorax paradoxus S110 7970507 YP_002946199.1 CDS Vapar_4321 NC_012791.1 4566126 4567730 D KEGG: har:HEAR1734 GGDEF domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 4566126..4567730 Variovorax paradoxus S110 7970508 YP_002946200.1 CDS Vapar_4323 NC_012791.1 4568358 4569617 R KEGG: dia:Dtpsy_0856 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(4568358..4569617) Variovorax paradoxus S110 7970511 YP_002946201.1 CDS Vapar_4324 NC_012791.1 4569621 4570226 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(4569621..4570226) Variovorax paradoxus S110 7970512 YP_002946202.1 CDS Vapar_4325 NC_012791.1 4570238 4570969 R KEGG: dia:Dtpsy_0858 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH complement(4570238..4570969) Variovorax paradoxus S110 7970513 YP_002946203.1 CDS Vapar_4326 NC_012791.1 4571032 4571946 R PFAM: protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: pol:Bpro_1338 protein serine/threonine phosphatases; protein serine/threonine phosphatase complement(4571032..4571946) Variovorax paradoxus S110 7970514 YP_002946204.1 CDS Vapar_4327 NC_012791.1 4571943 4572950 R PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: pol:Bpro_1337 serine/threonine protein kinase; serine/threonine protein kinase complement(4571943..4572950) Variovorax paradoxus S110 7970515 YP_002946205.1 CDS Vapar_4328 NC_012791.1 4573042 4573956 D PFAM: domain of unknown function DUF1732; YicC domain protein; KEGG: rfr:Rfer_1626 hypothetical protein; hypothetical protein 4573042..4573956 Variovorax paradoxus S110 7970516 YP_002946206.1 CDS gmk NC_012791.1 4573965 4574585 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4573965..4574585 Variovorax paradoxus S110 7970517 YP_002946207.1 CDS Vapar_4330 NC_012791.1 4574616 4574819 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and subunit alphas; DNA-directed RNA polymerase subunit omega 4574616..4574819 Variovorax paradoxus S110 7970518 YP_002946208.1 CDS Vapar_4331 NC_012791.1 4574921 4577179 D KEGG: aav:Aave_3585 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 4574921..4577179 Variovorax paradoxus S110 7970519 YP_002946209.1 CDS Vapar_4332 NC_012791.1 4577196 4577768 R TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: aav:Aave_3586 transcription elongation factor GreB; transcription elongation factor GreB complement(4577196..4577768) Variovorax paradoxus S110 7970520 YP_002946210.1 CDS Vapar_4333 NC_012791.1 4577808 4578869 R KEGG: acr:Acry_2758 hypothetical protein; hypothetical protein complement(4577808..4578869) Variovorax paradoxus S110 7970521 YP_002946211.1 CDS Vapar_4334 NC_012791.1 4578866 4579459 R KEGG: bte:BTH_I1816 adenylylsulfate kinase; TIGRFAM: adenylylsulfate kinase; PFAM: adenylylsulfate kinase; adenylylsulfate kinase complement(4578866..4579459) Variovorax paradoxus S110 7970522 YP_002946212.1 CDS hrcA NC_012791.1 4580000 4581010 R negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(4580000..4581010) Variovorax paradoxus S110 7970525 YP_002946213.1 CDS ppnK NC_012791.1 4581039 4581950 D catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein 4581039..4581950 Variovorax paradoxus S110 7970526 YP_002946214.1 CDS Vapar_4337 NC_012791.1 4581952 4583631 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rfr:Rfer_1652 DNA repair protein RecN; DNA repair protein RecN 4581952..4583631 Variovorax paradoxus S110 7970527 YP_002946215.1 CDS Vapar_4338 NC_012791.1 4583631 4584509 D PFAM: conserved hypothetical protein; KEGG: rfr:Rfer_1653 hypothetical protein; hypothetical protein 4583631..4584509 Variovorax paradoxus S110 7970528 YP_002946216.1 CDS Vapar_4339 NC_012791.1 4584525 4585586 R KEGG: ajs:Ajs_0901 A/G-specific DNA-adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; A/G-specific adenine glycosylase complement(4584525..4585586) Variovorax paradoxus S110 7970529 YP_002946217.1 CDS Vapar_4340 NC_012791.1 4585594 4587561 R KEGG: pol:Bpro_1298 hypothetical protein; hypothetical protein complement(4585594..4587561) Variovorax paradoxus S110 7970530 YP_002946218.1 CDS Vapar_4341 NC_012791.1 4587651 4588463 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(4587651..4588463) Variovorax paradoxus S110 7970531 YP_002946219.1 CDS Vapar_4342 NC_012791.1 4588535 4590385 D SMART: hypothetical protein; KEGG: pna:Pnap_0902 tetratricopeptide domain-containing protein; hypothetical protein 4588535..4590385 Variovorax paradoxus S110 7970532 YP_002946220.1 CDS Vapar_4343 NC_012791.1 4590382 4590906 D KEGG: pol:Bpro_1295 lipoprotein; lipoprotein 4590382..4590906 Variovorax paradoxus S110 7970533 YP_002946221.1 CDS ipk NC_012791.1 4590903 4591793 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 4590903..4591793 Variovorax paradoxus S110 7970534 YP_002946222.1 CDS Vapar_4345 NC_012791.1 4592076 4593047 D KEGG: vei:Veis_0951 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 4592076..4593047 Variovorax paradoxus S110 7970536 YP_002946223.1 CDS Vapar_4346 NC_012791.1 4593144 4593818 D TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: pol:Bpro_1292 50S ribosomal protein L25P; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 4593144..4593818 Variovorax paradoxus S110 7970537 YP_002946224.1 CDS Vapar_4347 NC_012791.1 4593892 4594524 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 4593892..4594524 Variovorax paradoxus S110 7970538 YP_002946225.1 CDS Vapar_4348 NC_012791.1 4594576 4595070 D KEGG: rfr:Rfer_1663 hypothetical protein; hypothetical protein 4594576..4595070 Variovorax paradoxus S110 7970539 YP_002946226.1 CDS Vapar_4349 NC_012791.1 4595056 4595343 R KEGG: pol:Bpro_1283 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin, iron-sulfur binding complement(4595056..4595343) Variovorax paradoxus S110 7970540 YP_002946227.1 CDS Vapar_4350 NC_012791.1 4595416 4596366 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0135 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 4595416..4596366 Variovorax paradoxus S110 7970541 YP_002946228.1 CDS Vapar_4351 NC_012791.1 4596363 4597238 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0136 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 4596363..4597238 Variovorax paradoxus S110 7970542 YP_002946229.1 CDS Vapar_4352 NC_012791.1 4597244 4598233 D KEGG: vei:Veis_0137 oligopeptide/dipeptide ABC transporter ATPase; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 4597244..4598233 Variovorax paradoxus S110 7970543 YP_002946230.1 CDS Vapar_4353 NC_012791.1 4598230 4599060 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_0138 ABC transporter; ABC transporter 4598230..4599060 Variovorax paradoxus S110 7970544 YP_002946231.1 CDS Vapar_4354 NC_012791.1 4599170 4600663 D PFAM: extracellular solute-binding protein family 5; KEGG: dia:Dtpsy_0816 extracellular solute-binding protein family 5; family 5 extracellular solute-binding protein 4599170..4600663 Variovorax paradoxus S110 7970545 YP_002946232.1 CDS Vapar_4355 NC_012791.1 4600868 4602355 D PFAM: extracellular solute-binding protein family 5; KEGG: dia:Dtpsy_0816 extracellular solute-binding protein family 5; family 5 extracellular solute-binding protein 4600868..4602355 Variovorax paradoxus S110 7970546 YP_002946233.1 CDS Vapar_4356 NC_012791.1 4602352 4603770 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 4602352..4603770 Variovorax paradoxus S110 7970547 YP_002946234.1 CDS Vapar_4357 NC_012791.1 4604066 4604695 R PFAM: protein of unknown function DUF161; KEGG: aav:Aave_3836 hypothetical protein; hypothetical protein complement(4604066..4604695) Variovorax paradoxus S110 7970548 YP_002946235.1 CDS Vapar_4358 NC_012791.1 4604733 4605602 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_3463 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4604733..4605602) Variovorax paradoxus S110 7970549 YP_002946236.1 CDS Vapar_4359 NC_012791.1 4605715 4606113 D PFAM: 4-oxalocrotonate tautomerase; KEGG: aav:Aave_3464 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 4605715..4606113 Variovorax paradoxus S110 7970550 YP_002946237.1 CDS Vapar_4360 NC_012791.1 4606145 4607503 D KEGG: cti:RALTA_B1962 hypothetical protein; hypothetical protein 4606145..4607503 Variovorax paradoxus S110 7970551 YP_002946238.1 CDS Vapar_4361 NC_012791.1 4607610 4609205 D PFAM: D-aminoacylase domain protein; amidohydrolase; amidohydrolase; KEGG: swd:Swoo_3252 N-acyl-D-amino-acid deacylase; N-acyl-D-amino-acid deacylase 4607610..4609205 Variovorax paradoxus S110 7970552 YP_002946239.1 CDS Vapar_4362 NC_012791.1 4609212 4609904 R PFAM: phosphoglycerate mutase; KEGG: vei:Veis_1484 phosphoglycerate mutase; phosphoglycerate mutase complement(4609212..4609904) Variovorax paradoxus S110 7970553 YP_002946240.1 CDS Vapar_4363 NC_012791.1 4610012 4610731 D PFAM: alpha/beta hydrolase fold; Thioesterase; KEGG: mag:amb2701 hydrolase or acyltransferase; alpha/beta hydrolase fold protein 4610012..4610731 Variovorax paradoxus S110 7970554 YP_002946241.1 CDS Vapar_4364 NC_012791.1 4610719 4611378 R KEGG: cti:RALTA_A0071 pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase) (C15 exopeptidase); TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I; pyrrolidone-carboxylate peptidase complement(4610719..4611378) Variovorax paradoxus S110 7970555 YP_002946242.1 CDS Vapar_4365 NC_012791.1 4611387 4612127 R PFAM: LamB/YcsF family protein; KEGG: reu:Reut_A0089 hypothetical protein; LamB/YcsF family protein complement(4611387..4612127) Variovorax paradoxus S110 7970556 YP_002946243.1 CDS Vapar_4366 NC_012791.1 4612198 4613196 R KEGG: bte:BTH_I0229 UreA amidolyase-related protein; TIGRFAM: urea amidolyase related protein; PFAM: allophanate hydrolase subunit 2; SMART: allophanate hydrolase subunit 2; urea amidolyase-like protein complement(4612198..4613196) Variovorax paradoxus S110 7973308 YP_002946244.1 CDS Vapar_4367 NC_012791.1 4613193 4613840 R PFAM: allophanate hydrolase subunit 1; SMART: allophanate hydrolase subunit 1; KEGG: rso:RSc2171 hypothetical protein; allophanate hydrolase subunit 1 complement(4613193..4613840) Variovorax paradoxus S110 7974041 YP_002946245.1 CDS Vapar_4368 NC_012791.1 4613851 4614354 R KEGG: aav:Aave_3869 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(4613851..4614354) Variovorax paradoxus S110 7974042 YP_002946246.1 CDS Vapar_4369 NC_012791.1 4614398 4615060 R TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase KEGG: dac:Daci_1802 methyltransferase; methyltransferase complement(4614398..4615060) Variovorax paradoxus S110 7974043 YP_002946247.1 CDS Vapar_4370 NC_012791.1 4615088 4615723 R PFAM: lysine exporter (LYSE/YGGA); KEGG: rpi:Rpic_2011 lysine exporter protein (LysE/YggA); lysine exporter LysE/YggA complement(4615088..4615723) Variovorax paradoxus S110 7974044 YP_002946248.1 CDS Vapar_4371 NC_012791.1 4615805 4616722 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 4615805..4616722 Variovorax paradoxus S110 7974045 YP_002946249.1 CDS Vapar_4372 NC_012791.1 4616734 4618080 R PFAM: peptidase M16 domain protein; KEGG: rfr:Rfer_1670 peptidase M16-like; peptidase M16 domain-containing protein complement(4616734..4618080) Variovorax paradoxus S110 7974046 YP_002946250.1 CDS Vapar_4373 NC_012791.1 4618098 4619519 R PFAM: peptidase M16 domain protein; KEGG: vei:Veis_4762 peptidase M16 domain-containing protein; peptidase M16 domain-containing protein complement(4618098..4619519) Variovorax paradoxus S110 7974047 YP_002946251.1 CDS Vapar_4374 NC_012791.1 4619957 4620865 D KEGG: aav:Aave_3874 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle-docking protein FtsY 4619957..4620865 Variovorax paradoxus S110 7974048 YP_002946252.1 CDS Vapar_4375 NC_012791.1 4620890 4621921 R KEGG: bam:Bamb_5150 hypothetical protein; hypothetical protein complement(4620890..4621921) Variovorax paradoxus S110 7974049 YP_002946253.1 CDS Vapar_4376 NC_012791.1 4622071 4623852 R PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: lch:Lcho_4096 histidine kinase; histidine kinase complement(4622071..4623852) Variovorax paradoxus S110 7974050 YP_002946254.1 CDS Vapar_4377 NC_012791.1 4623863 4624576 R PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: rru:Rru_A3229 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator complement(4623863..4624576) Variovorax paradoxus S110 7974051 YP_002946255.1 CDS Vapar_4378 NC_012791.1 4624744 4625208 D PFAM: protein of unknown function DUF962; KEGG: pol:Bpro_1273 protein of unknown function DUF962; hypothetical protein 4624744..4625208 Variovorax paradoxus S110 7974052 YP_002946256.1 CDS Vapar_4379 NC_012791.1 4625356 4626297 D TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: aav:Aave_3894 RNA polymerase, sigma 32 subunit, RpoH; RNA polymerase sigma-32 subunit RpoH 4625356..4626297 Variovorax paradoxus S110 7974053 YP_002946257.1 CDS Vapar_4380 NC_012791.1 4626345 4627184 R KEGG: dac:Daci_3654 hypothetical protein; hypothetical protein complement(4626345..4627184) Variovorax paradoxus S110 7974054 YP_002946258.1 CDS Vapar_4381 NC_012791.1 4627195 4627824 R PFAM: electron transport protein SCO1/SenC; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: rfr:Rfer_1690 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(4627195..4627824) Variovorax paradoxus S110 7974055 YP_002946259.1 CDS Vapar_4382 NC_012791.1 4627833 4628738 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(4627833..4628738) Variovorax paradoxus S110 7974056 YP_002946260.1 CDS Vapar_4383 NC_012791.1 4628735 4629955 R PFAM: cytochrome oxidase assembly; KEGG: aav:Aave_3900 cytochrome oxidase assembly; cytochrome oxidase assembly complement(4628735..4629955) Variovorax paradoxus S110 7974057 YP_002946261.1 CDS Vapar_4384 NC_012791.1 4629962 4630645 R KEGG: ajs:Ajs_3529 hypothetical protein; hypothetical protein complement(4629962..4630645) Variovorax paradoxus S110 7974058 YP_002946262.1 CDS Vapar_4385 NC_012791.1 4630629 4631363 R KEGG: pna:Pnap_0884 transmembrane cytochrome oxidase; transmembrane cytochrome oxidase complement(4630629..4631363) Variovorax paradoxus S110 7974059 YP_002946263.1 CDS Vapar_4386 NC_012791.1 4631475 4631696 D KEGG: pol:Bpro_1250 transmembrane protein; transmembrane protein 4631475..4631696 Variovorax paradoxus S110 7974060 YP_002946264.1 CDS Vapar_4387 NC_012791.1 4631771 4632652 R PFAM: cytochrome C oxidase subunit III; KEGG: pol:Bpro_1249 cytochrome C oxidase subunit III; cytochrome-c oxidase complement(4631771..4632652) Variovorax paradoxus S110 7974061 YP_002946265.1 CDS Vapar_4388 NC_012791.1 4632723 4632932 R KEGG: pol:Bpro_1248 hypothetical protein; hypothetical protein complement(4632723..4632932) Variovorax paradoxus S110 7974062 YP_002946266.1 CDS Vapar_4389 NC_012791.1 4632929 4633555 R involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein complement(4632929..4633555) Variovorax paradoxus S110 7974063 YP_002946267.1 CDS Vapar_4390 NC_012791.1 4633584 4633709 R KEGG: ajs:Ajs_3535 hypothetical protein; hypothetical protein complement(4633584..4633709) Variovorax paradoxus S110 7974064 YP_002946268.1 CDS Vapar_4391 NC_012791.1 4633732 4635363 R KEGG: ajs:Ajs_3536 cytochrome-c oxidase; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I complement(4633732..4635363) Variovorax paradoxus S110 7974065 YP_002946269.1 CDS Vapar_4392 NC_012791.1 4635410 4636588 R TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome C class I; KEGG: vei:Veis_1380 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II complement(4635410..4636588) Variovorax paradoxus S110 7974066 YP_002946270.1 CDS Vapar_4393 NC_012791.1 4636649 4637125 R KEGG: pol:Bpro_1244 transmembrane protein; transmembrane protein complement(4636649..4637125) Variovorax paradoxus S110 7974067 YP_002946271.1 CDS Vapar_4394 NC_012791.1 4637293 4638207 R KEGG: aav:Aave_3908 biotin synthesis protein BioC; biotin synthesis protein BioC complement(4637293..4638207) Variovorax paradoxus S110 7974068 YP_002946272.1 CDS Vapar_4395 NC_012791.1 4638231 4638947 D KEGG: rfr:Rfer_1678 ComF family protein; ComF family protein 4638231..4638947 Variovorax paradoxus S110 7974069 YP_002946273.1 CDS Vapar_4396 NC_012791.1 4638967 4639428 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rfr:Rfer_1677 tRNA/rRNA methyltransferase (SpoU); TrmH family RNA methyltransferase 4638967..4639428 Variovorax paradoxus S110 7974070 YP_002946274.1 CDS Vapar_4397 NC_012791.1 4639438 4639908 R PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_1240 MaoC-like dehydratase; enoyl-CoA hydratase complement(4639438..4639908) Variovorax paradoxus S110 7974071 YP_002946275.1 CDS Vapar_4398 NC_012791.1 4639961 4640581 R PFAM: cobyrinic acid ac-diamide synthase; KEGG: rfr:Rfer_1675 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(4639961..4640581) Variovorax paradoxus S110 7974072 YP_002946276.1 CDS Vapar_4399 NC_012791.1 4640674 4641369 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pol:Bpro_1238 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 4640674..4641369 Variovorax paradoxus S110 7974073 YP_002946277.1 CDS Vapar_4400 NC_012791.1 4641372 4643222 D TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: pol:Bpro_1237 glutathione-regulated potassium-efflux system protein KefC; potassium efflux system protein 4641372..4643222 Variovorax paradoxus S110 7974074 YP_002946278.1 CDS Vapar_4401 NC_012791.1 4643250 4644116 R PFAM: amidohydrolase 2; KEGG: dac:Daci_4537 amidohydrolase 2; amidohydrolase 2 complement(4643250..4644116) Variovorax paradoxus S110 7974075 YP_002946279.1 CDS Vapar_4402 NC_012791.1 4644221 4644994 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4644221..4644994 Variovorax paradoxus S110 7974076 YP_002946280.1 CDS Vapar_4403 NC_012791.1 4644991 4646844 D catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 4644991..4646844 Variovorax paradoxus S110 7974077 YP_002946281.1 CDS Vapar_4404 NC_012791.1 4646870 4647655 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_3114 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4646870..4647655 Variovorax paradoxus S110 7974078 YP_002946282.1 CDS Vapar_4405 NC_012791.1 4647705 4648694 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0604 hypothetical protein; hypothetical protein 4647705..4648694 Variovorax paradoxus S110 7974079 YP_002946283.1 CDS Vapar_4406 NC_012791.1 4648702 4650471 D PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: pol:Bpro_3118 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 4648702..4650471 Variovorax paradoxus S110 7974080 YP_002946284.1 CDS Vapar_4407 NC_012791.1 4650512 4651003 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pna:Pnap_0603 MarR family transcriptional regulator; MarR family transcriptional regulator 4650512..4651003 Variovorax paradoxus S110 7974081 YP_002946285.1 CDS Vapar_4408 NC_012791.1 4651039 4651215 D hypothetical protein 4651039..4651215 Variovorax paradoxus S110 7974082 YP_002946286.1 CDS Vapar_4409 NC_012791.1 4651271 4651933 R PFAM: regulatory protein TetR; KEGG: pol:Bpro_4769 TetR family transcriptional regulator; TetR family transcriptional regulator complement(4651271..4651933) Variovorax paradoxus S110 7974083 YP_002946287.1 CDS Vapar_4410 NC_012791.1 4652062 4652499 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: aav:Aave_4614 3-demethylubiquinone-9 3-methyltransferase; glyoxalase/bleomycin resistance protein/dioxygenase 4652062..4652499 Variovorax paradoxus S110 7974084 YP_002946288.1 CDS Vapar_4411 NC_012791.1 4652541 4653068 D KEGG: mms:mma_1843 hypothetical protein; hypothetical protein 4652541..4653068 Variovorax paradoxus S110 7974085 YP_002946289.1 CDS Vapar_4412 NC_012791.1 4653088 4653507 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: bpt:Bpet2934 PhnB protein; glyoxalase/bleomycin resistance protein/dioxygenase 4653088..4653507 Variovorax paradoxus S110 7974086 YP_002946290.1 CDS Vapar_4413 NC_012791.1 4653544 4655037 D TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_7158 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter 4653544..4655037 Variovorax paradoxus S110 7974087 YP_002946291.1 CDS Vapar_4414 NC_012791.1 4655102 4655461 D PFAM: protein of unknown function DUF1428; KEGG: oca:OCAR_4758 RNA signal recognition particle 4.5S RNA; hypothetical protein 4655102..4655461 Variovorax paradoxus S110 7974088 YP_002946292.1 CDS Vapar_4415 NC_012791.1 4655486 4656244 R PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_1586 hypothetical protein; hypothetical protein complement(4655486..4656244) Variovorax paradoxus S110 7974089 YP_002946293.1 CDS Vapar_4416 NC_012791.1 4656445 4656918 D PFAM: DoxX family protein; KEGG: rme:Rmet_1594 DoxX; DoxX family protein 4656445..4656918 Variovorax paradoxus S110 7974090 YP_002946294.1 CDS Vapar_4417 NC_012791.1 4656931 4657707 R PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: dac:Daci_5739 cyclic nucleotide-binding protein; Crp/Fnr family transcriptional regulator complement(4656931..4657707) Variovorax paradoxus S110 7974091 YP_002946295.1 CDS Vapar_4418 NC_012791.1 4657706 4659349 D PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: dac:Daci_5738 adenylate/guanylate cyclase; adenylate/guanylate cyclase 4657706..4659349 Variovorax paradoxus S110 7974092 YP_002946296.1 CDS Vapar_4419 NC_012791.1 4659375 4660412 R KEGG: dac:Daci_0680 RNA 3'-phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-phosphate cyclase complement(4659375..4660412) Variovorax paradoxus S110 7974093 YP_002946297.1 CDS Vapar_4420 NC_012791.1 4660409 4660792 R KEGG: hch:HCH_10017 hypothetical protein; hypothetical protein complement(4660409..4660792) Variovorax paradoxus S110 7974094 YP_002946298.1 CDS Vapar_4421 NC_012791.1 4660796 4662019 R PFAM: protein of unknown function UPF0027; KEGG: pna:Pnap_0498 hypothetical protein; hypothetical protein complement(4660796..4662019) Variovorax paradoxus S110 7974095 YP_002946299.1 CDS Vapar_4422 NC_012791.1 4662053 4663201 R PFAM: band 7 protein; SMART: band 7 protein; KEGG: pol:Bpro_1471 band 7 protein; hypothetical protein complement(4662053..4663201) Variovorax paradoxus S110 7974096 YP_002946300.1 CDS Vapar_4423 NC_012791.1 4663909 4665522 D PFAM: regulator of RNA terminal phosphate cyclase; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dac:Daci_0675 regulator of RNA terminal phosphate cyclase; Sigma 54 interacting domain-containing protein 4663909..4665522 Variovorax paradoxus S110 7974097 YP_002946301.1 CDS Vapar_4424 NC_012791.1 4665559 4666506 D PFAM: ornithine cyclodeaminase/mu-crystallin; shikimate/quinate 5-dehydrogenase; KEGG: bpe:BP1505 ornithine cyclodeaminase; ornithine cyclodeaminase 4665559..4666506 Variovorax paradoxus S110 7974098 YP_002946302.1 CDS Vapar_4425 NC_012791.1 4666648 4666890 D hypothetical protein 4666648..4666890 Variovorax paradoxus S110 7974099 YP_002946303.1 CDS Vapar_4426 NC_012791.1 4666936 4668726 R PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; cytochrome C biogenesis protein transmembrane region; redoxin; KEGG: oca:OCAR_6268 cytochrome C biogenesis protein, transmembrane region; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(4666936..4668726) Variovorax paradoxus S110 7974100 YP_002946304.1 CDS Vapar_4427 NC_012791.1 4668730 4670106 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mms:mma_3325 two-component sensor histidine kinase; histidine kinase complement(4668730..4670106) Variovorax paradoxus S110 7974101 YP_002946305.1 CDS Vapar_4428 NC_012791.1 4670158 4670577 R PFAM: OsmC family protein; KEGG: bur:Bcep18194_A4882 OsmC-like protein; OsmC family protein complement(4670158..4670577) Variovorax paradoxus S110 7974102 YP_002946306.1 CDS Vapar_4429 NC_012791.1 4670782 4671525 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: reh:H16_B1785 response regulator, OmpR-family; winged helix family two component transcriptional regulator 4670782..4671525 Variovorax paradoxus S110 7974103 YP_002946307.1 CDS Vapar_4430 NC_012791.1 4671594 4671845 D hypothetical protein 4671594..4671845 Variovorax paradoxus S110 7974104 YP_002946308.1 CDS Vapar_4431 NC_012791.1 4671826 4672308 R KEGG: pol:Bpro_1373 transcriptional regulator, MerR family; TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator complement(4671826..4672308) Variovorax paradoxus S110 7974105 YP_002946309.1 CDS Vapar_4432 NC_012791.1 4672356 4673330 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_1233 uncharacterized protein UPF0065; hypothetical protein complement(4672356..4673330) Variovorax paradoxus S110 7974106 YP_002946310.1 CDS Vapar_4433 NC_012791.1 4673330 4674535 R KEGG: pol:Bpro_1231 beta-ketoadipyl CoA thiolase; TIGRFAM: beta-ketoadipyl CoA thiolase; acetyl-CoA acetyltransferase; PFAM: thiolase; beta-ketoadipyl CoA thiolase complement(4673330..4674535) Variovorax paradoxus S110 7974107 YP_002946311.1 CDS Vapar_4434 NC_012791.1 4674573 4675226 R KEGG: rfr:Rfer_1035 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, subunit beta; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit beta complement(4674573..4675226) Variovorax paradoxus S110 7974108 YP_002946312.1 CDS Vapar_4435 NC_012791.1 4675223 4675924 R KEGG: aav:Aave_3946 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, subunit alpha; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit alpha complement(4675223..4675924) Variovorax paradoxus S110 7974109 YP_002946313.1 CDS Vapar_4436 NC_012791.1 4676090 4676875 D KEGG: pna:Pnap_0864 beta-ketoadipate pathway transcription regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; IclR family transcriptional regulator 4676090..4676875 Variovorax paradoxus S110 7974110 YP_002946314.1 CDS Vapar_4437 NC_012791.1 4676955 4678418 D KEGG: abb:ABBFA_003338 hypothetical protein; hypothetical protein 4676955..4678418 Variovorax paradoxus S110 7974111 YP_002946315.1 CDS Vapar_4438 NC_012791.1 4678455 4679471 R PFAM: conserved hypothetical protein; KEGG: rfr:Rfer_1691 hypothetical protein; hypothetical protein complement(4678455..4679471) Variovorax paradoxus S110 7974112 YP_002946316.1 CDS Vapar_4439 NC_012791.1 4679618 4680292 R PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; KEGG: reh:H16_B0621 response regulator, NarL-family; two component LuxR family transcriptional regulator complement(4679618..4680292) Variovorax paradoxus S110 7974113 YP_002946317.1 CDS Vapar_4440 NC_012791.1 4680692 4681873 D PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: rfr:Rfer_1348 tetratricopeptide TPR_2; hypothetical protein 4680692..4681873 Variovorax paradoxus S110 7974114 YP_002946318.1 CDS Vapar_4441 NC_012791.1 4682215 4683339 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rfr:Rfer_1347 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 4682215..4683339 Variovorax paradoxus S110 7974115 YP_002946319.1 CDS Vapar_4442 NC_012791.1 4683753 4683935 D PFAM: Flp/Fap pilin component; KEGG: dvm:DvMF_2744 Flp/Fap pilin component; Flp/Fap pilin component 4683753..4683935 Variovorax paradoxus S110 7974116 YP_002946320.1 CDS Vapar_4443 NC_012791.1 4683938 4684435 D PFAM: peptidase A24A prepilin type IV; KEGG: bvi:Bcep1808_1484 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 4683938..4684435 Variovorax paradoxus S110 7974117 YP_002946321.1 CDS Vapar_4444 NC_012791.1 4684518 4685513 D TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: cti:RALTA_B0192 Flp pilus assembly CpaB; Flp pilus assembly protein CpaB 4684518..4685513 Variovorax paradoxus S110 7974118 YP_002946322.1 CDS Vapar_4445 NC_012791.1 4685562 4686935 D PFAM: type II and III secretion system protein; KEGG: bxe:Bxe_A2798 outer membrane channel signal peptide protein, CpaC like; type II and III secretion system protein 4685562..4686935 Variovorax paradoxus S110 7974119 YP_002946323.1 CDS Vapar_4446 NC_012791.1 4686977 4688260 D KEGG: bpy:Bphyt_1654 pilus assembly protein, CpaE-like protein; response regulator receiver protein 4686977..4688260 Variovorax paradoxus S110 7974120 YP_002946324.1 CDS Vapar_4447 NC_012791.1 4688267 4689583 D PFAM: type II secretion system protein E; KEGG: bxe:Bxe_A2796 type II/IV secretion ATPase protein, TadA; type II secretion system protein E 4688267..4689583 Variovorax paradoxus S110 7974121 YP_002946325.1 CDS Vapar_4448 NC_012791.1 4689855 4690580 D PFAM: type II secretion system protein; KEGG: bpy:Bphyt_1656 type II secretion system protein; type II secretion system protein 4689855..4690580 Variovorax paradoxus S110 7970068 YP_002946326.1 CDS Vapar_4449 NC_012791.1 4690577 4691536 D PFAM: type II secretion system protein; KEGG: bxe:Bxe_A2794 tight adherence TadC related transmembrane protein; type II secretion system protein 4690577..4691536 Variovorax paradoxus S110 7972737 YP_002946327.1 CDS Vapar_4450 NC_012791.1 4691533 4692468 D SMART: hypothetical protein; KEGG: bte:BTH_I2537 TPR domain-containing protein; hypothetical protein 4691533..4692468 Variovorax paradoxus S110 7972738 YP_002946328.1 CDS Vapar_4451 NC_012791.1 4692465 4692884 D KEGG: bam:Bamb_1409 hypothetical protein; hypothetical protein 4692465..4692884 Variovorax paradoxus S110 7972739 YP_002946329.1 CDS Vapar_4452 NC_012791.1 4692915 4693385 D PFAM: TadE family protein; KEGG: dac:Daci_2065 TadE family protein; TadE family protein 4692915..4693385 Variovorax paradoxus S110 7972740 YP_002946330.1 CDS Vapar_4453 NC_012791.1 4693896 4695665 D KEGG: bte:BTH_I2535 hypothetical protein; hypothetical protein 4693896..4695665 Variovorax paradoxus S110 7972741 YP_002946331.1 CDS Vapar_4454 NC_012791.1 4695694 4697133 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: bpy:Bphyt_1661 sigma54 specific transcriptional regulator, fis family; sigma54 specific Fis family transcriptional regulator 4695694..4697133 Variovorax paradoxus S110 7972742 YP_002946332.1 CDS Vapar_4455 NC_012791.1 4697150 4698706 R PFAM: outer membrane efflux protein; KEGG: dac:Daci_2077 outer membrane efflux protein; outer membrane efflux protein complement(4697150..4698706) Variovorax paradoxus S110 7972743 YP_002946333.1 CDS Vapar_4456 NC_012791.1 4698703 4700019 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_2078 HlyD family type I secretion membrane fusion protein; HlyD family type I secretion membrane fusion protein complement(4698703..4700019) Variovorax paradoxus S110 7972744 YP_002946334.1 CDS Vapar_4457 NC_012791.1 4700057 4701898 R PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: dac:Daci_2079 ABC transporter; ABC transporter complement(4700057..4701898) Variovorax paradoxus S110 7972745 YP_002946335.1 CDS Vapar_4458 NC_012791.1 4701978 4702274 R hypothetical protein complement(4701978..4702274) Variovorax paradoxus S110 7972746 YP_002946336.1 CDS Vapar_4459 NC_012791.1 4702271 4705345 R PFAM: Mur ligase middle domain protein; KEGG: kpn:KPN_00998 glycosyl transferase, group I; Mur ligase middle domain-containing protein complement(4702271..4705345) Variovorax paradoxus S110 7972747 YP_002946337.1 CDS Vapar_4460 NC_012791.1 4705424 4705930 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dac:Daci_2081 OmpA/MotB domain-containing protein; peptidoglycan-associated lipoprotein complement(4705424..4705930) Variovorax paradoxus S110 7972748 YP_002946338.1 CDS Vapar_4461 NC_012791.1 4706019 4709192 R KEGG: dac:Daci_2082 hypothetical protein; hypothetical protein complement(4706019..4709192) Variovorax paradoxus S110 7972749 YP_002946339.1 CDS Vapar_4462 NC_012791.1 4709478 4709912 D PFAM: Domain of unknown function DUF1841; KEGG: aav:Aave_3950 hypothetical protein; hypothetical protein 4709478..4709912 Variovorax paradoxus S110 7972750 YP_002946340.1 CDS Vapar_4463 NC_012791.1 4709909 4710862 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpi:Rpic_1317 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4709909..4710862) Variovorax paradoxus S110 7972751 YP_002946341.1 CDS Vapar_4464 NC_012791.1 4711003 4711719 D TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: bcj:BCAM1300 protocatechuate 3,4-dioxygenase beta chain; protocatechuate 3,4-dioxygenase subunit beta 4711003..4711719 Variovorax paradoxus S110 7972752 YP_002946342.1 CDS Vapar_4465 NC_012791.1 4711739 4712347 D KEGG: bph:Bphy_3890 protocatechuate 3,4-dioxygenase, subunit alpha; TIGRFAM: protocatechuate 3,4-dioxygenase, subunit alpha; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha 4711739..4712347 Variovorax paradoxus S110 7972753 YP_002946343.1 CDS Vapar_4466 NC_012791.1 4712421 4713113 R PFAM: cytochrome C class I; KEGG: pol:Bpro_1223 cytochrome C, class I; cytochrome C class I complement(4712421..4713113) Variovorax paradoxus S110 7972754 YP_002946344.1 CDS Vapar_4467 NC_012791.1 4713276 4714130 D PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: pol:Bpro_1222 ATPase associated with various cellular activities, AAA_5; ATPase AAA 4713276..4714130 Variovorax paradoxus S110 7972755 YP_002946345.1 CDS Vapar_4468 NC_012791.1 4714150 4714746 D PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1220 hypothetical protein; GCN5-like N-acetyltransferaser 4714150..4714746 Variovorax paradoxus S110 7972756 YP_002946346.1 CDS Vapar_4469 NC_012791.1 4714772 4715959 D KEGG: ajs:Ajs_3559 hypothetical protein; hypothetical protein 4714772..4715959 Variovorax paradoxus S110 7972757 YP_002946347.1 CDS Vapar_4470 NC_012791.1 4716031 4717962 D PFAM: surface antigen (D15); KEGG: aav:Aave_3955 surface antigen (D15); surface antigen (D15) 4716031..4717962 Variovorax paradoxus S110 7972758 YP_002946348.1 CDS Vapar_4471 NC_012791.1 4717977 4722056 D PFAM: protein of unknown function DUF490; KEGG: aav:Aave_3956 hypothetical protein; hypothetical protein 4717977..4722056 Variovorax paradoxus S110 7972759 YP_002946349.1 CDS Vapar_4472 NC_012791.1 4722133 4722435 D hypothetical protein 4722133..4722435 Variovorax paradoxus S110 7972760 YP_002946350.1 CDS Vapar_4473 NC_012791.1 4722432 4723298 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_3233 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4722432..4723298) Variovorax paradoxus S110 7972761 YP_002946351.1 CDS Vapar_4474 NC_012791.1 4723412 4723648 D hypothetical protein 4723412..4723648 Variovorax paradoxus S110 7972762 YP_002946352.1 CDS Vapar_4475 NC_012791.1 4723697 4725022 R PFAM: major facilitator superfamily MFS_1; KEGG: mms:mma_3508 major facilitator superfamily oxalate/formate antiporter; major facilitator superfamily protein complement(4723697..4725022) Variovorax paradoxus S110 7972763 YP_002946353.1 CDS Vapar_4476 NC_012791.1 4725359 4725661 D hypothetical protein 4725359..4725661 Variovorax paradoxus S110 7972764 YP_002946354.1 CDS Vapar_4477 NC_012791.1 4725704 4726651 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mms:mma_0388 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4725704..4726651) Variovorax paradoxus S110 7972765 YP_002946355.1 CDS Vapar_4478 NC_012791.1 4726720 4728135 R KEGG: tmz:Tmz1t_1294 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta; pyruvate kinase complement(4726720..4728135) Variovorax paradoxus S110 7972766 YP_002946356.1 CDS Vapar_4479 NC_012791.1 4728213 4729226 R Ketopantoate reductase; catalyzes the NADPH reduction of Ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(4728213..4729226) Variovorax paradoxus S110 7972767 YP_002946357.1 CDS Vapar_4480 NC_012791.1 4729273 4730049 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_2792 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(4729273..4730049) Variovorax paradoxus S110 7972768 YP_002946358.1 CDS Vapar_4481 NC_012791.1 4730095 4730994 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(4730095..4730994) Variovorax paradoxus S110 7972769 YP_002946359.1 CDS Vapar_4482 NC_012791.1 4731311 4732480 R KEGG: har:HEAR0343 succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase, subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; phosphoribosylglycinamide synthetase; succinyl-CoA synthetase subunit beta complement(4731311..4732480) Variovorax paradoxus S110 7972770 YP_002946360.1 CDS Vapar_4483 NC_012791.1 4732489 4732818 R KEGG: mms:mma_0407 hypothetical protein; hypothetical protein complement(4732489..4732818) Variovorax paradoxus S110 7972771 YP_002946361.1 CDS Vapar_4484 NC_012791.1 4733026 4734276 R catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase complement(4733026..4734276) Variovorax paradoxus S110 7972772 YP_002946362.1 CDS Vapar_4485 NC_012791.1 4734276 4734713 R KEGG: pol:Bpro_2802 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein complement(4734276..4734713) Variovorax paradoxus S110 7972773 YP_002946363.1 CDS Vapar_4486 NC_012791.1 4734786 4736057 R catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase complement(4734786..4736057) Variovorax paradoxus S110 7972774 YP_002946364.1 CDS Vapar_4487 NC_012791.1 4736084 4737913 R catalyzes the formation of formyl-CoA from oxalyl-CoA; oxalyl-CoA decarboxylase complement(4736084..4737913) Variovorax paradoxus S110 7972775 YP_002946365.1 CDS Vapar_4488 NC_012791.1 4737959 4738051 R hypothetical protein complement(4737959..4738051) Variovorax paradoxus S110 7972776 YP_002946366.1 CDS Vapar_4489 NC_012791.1 4738070 4738678 D PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: pol:Bpro_2799 cyclic nucleotide-binding domain (cNMP-BD) protein; Crp/Fnr family transcriptional regulator 4738070..4738678 Variovorax paradoxus S110 7972777 YP_002946367.1 CDS Vapar_4490 NC_012791.1 4738693 4739529 R PFAM: transport-associated; KEGG: pol:Bpro_2798 transport-associated; transport-associated complement(4738693..4739529) Variovorax paradoxus S110 7972778 YP_002946368.1 CDS Vapar_4491 NC_012791.1 4739545 4741074 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: pol:Bpro_2797 protein of unknown function DUF112, transmembrane; hypothetical protein complement(4739545..4741074) Variovorax paradoxus S110 7972779 YP_002946369.1 CDS Vapar_4492 NC_012791.1 4741096 4741695 R KEGG: pol:Bpro_2796 hypothetical protein; hypothetical protein complement(4741096..4741695) Variovorax paradoxus S110 7972780 YP_002946370.1 CDS Vapar_4493 NC_012791.1 4741736 4742761 R PFAM: conserved hypothetical protein; KEGG: mms:mma_0394 tricarboxylate binding receptor; hypothetical protein complement(4741736..4742761) Variovorax paradoxus S110 7972781 YP_002946371.1 CDS Vapar_4494 NC_012791.1 4743079 4743315 D hypothetical protein 4743079..4743315 Variovorax paradoxus S110 7972782 YP_002946372.1 CDS Vapar_4495 NC_012791.1 4743621 4744850 D PFAM: integrase family protein; KEGG: har:HEAR0701 integrase; integrase family protein 4743621..4744850 Variovorax paradoxus S110 7972784 YP_002946373.1 CDS Vapar_4496 NC_012791.1 4745121 4745258 R hypothetical protein complement(4745121..4745258) Variovorax paradoxus S110 7972785 YP_002946374.1 CDS Vapar_4497 NC_012791.1 4745384 4745710 D PFAM: plasmid stabilization system; KEGG: mpt:Mpe_A1668 hypothetical protein; plasmid stabilization system 4745384..4745710 Variovorax paradoxus S110 7972786 YP_002946375.1 CDS Vapar_4498 NC_012791.1 4748063 4749511 R PFAM: transposase IS4 family protein; KEGG: reu:Reut_C5936 IS4 family transposase; transposase IS4 family protein complement(4748063..4749511) Variovorax paradoxus S110 7972787 YP_002946376.1 CDS Vapar_4499 NC_012791.1 4749662 4750012 R KEGG: afw:Anae109_1067 hypothetical protein; hypothetical protein complement(4749662..4750012) Variovorax paradoxus S110 7972788 YP_002946377.1 CDS Vapar_4500 NC_012791.1 4750439 4750987 D PFAM: protein of unknown function DUF1003; KEGG: har:HEAR0064 hypothetical protein; hypothetical protein 4750439..4750987 Variovorax paradoxus S110 7972789 YP_002946378.1 CDS Vapar_4501 NC_012791.1 4752157 4753353 R PFAM: transposase; KEGG: pol:Bpro_4805 transposase; transposase complement(4752157..4753353) Variovorax paradoxus S110 7972790 YP_002946379.1 CDS Vapar_4502 NC_012791.1 4753363 4754235 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pol:Bpro_4806 phage integrase; integrase family protein complement(4753363..4754235) Variovorax paradoxus S110 7972791 YP_002946380.1 CDS Vapar_4503 NC_012791.1 4754656 4755303 R KEGG: amc:MADE_03767 hypothetical protein; hypothetical protein complement(4754656..4755303) Variovorax paradoxus S110 7972792 YP_002946381.1 CDS Vapar_4504 NC_012791.1 4755484 4755765 R hypothetical protein complement(4755484..4755765) Variovorax paradoxus S110 7972793 YP_002946382.1 CDS Vapar_4505 NC_012791.1 4755961 4756209 R KEGG: ppu:PP_3984 ISPpu13, transposase Orf3; ISPpu13, transposase Orf3 complement(4755961..4756209) Variovorax paradoxus S110 7972794 YP_002946383.1 CDS Vapar_4506 NC_012791.1 4756388 4756939 D KEGG: eba:ebB3 hypothetical protein; hypothetical protein 4756388..4756939 Variovorax paradoxus S110 7972795 YP_002946384.1 CDS Vapar_4507 NC_012791.1 4756978 4757649 R KEGG: mpt:Mpe_B0034 hypothetical protein; hypothetical protein complement(4756978..4757649) Variovorax paradoxus S110 7972796 YP_002946385.1 CDS Vapar_4508 NC_012791.1 4758236 4758808 R PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB1022 acetyltransferase; GCN5-like N-acetyltransferaser complement(4758236..4758808) Variovorax paradoxus S110 7972797 YP_002946386.1 CDS Vapar_4509 NC_012791.1 4760082 4760390 R hypothetical protein complement(4760082..4760390) Variovorax paradoxus S110 7972798 YP_002946387.1 CDS Vapar_4510 NC_012791.1 4760435 4760965 R hypothetical protein complement(4760435..4760965) Variovorax paradoxus S110 7972799 YP_002946388.1 CDS Vapar_4511 NC_012791.1 4760962 4763145 R KEGG: bav:BAV2326 membrane protein; hypothetical protein complement(4760962..4763145) Variovorax paradoxus S110 7972800 YP_002946389.1 CDS Vapar_4512 NC_012791.1 4763297 4763692 R hypothetical protein complement(4763297..4763692) Variovorax paradoxus S110 7972801 YP_002946390.1 CDS Vapar_4514 NC_012791.1 4764290 4765150 D KEGG: ank:AnaeK_3348 hypothetical protein; hypothetical protein 4764290..4765150 Variovorax paradoxus S110 7972803 YP_002946391.1 CDS Vapar_4515 NC_012791.1 4765229 4765984 D PFAM: Domain of unknown function DUF1814; KEGG: tmz:Tmz1t_0970 domain of unknown function DUF1814; hypothetical protein 4765229..4765984 Variovorax paradoxus S110 7972804 YP_002946392.1 CDS Vapar_4519 NC_012791.1 4767858 4768130 R PFAM: prophage CP4-57 regulator; KEGG: ajs:Ajs_1859 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA complement(4767858..4768130) Variovorax paradoxus S110 7972808 YP_002946393.1 CDS Vapar_4520 NC_012791.1 4768386 4768652 R PFAM: prophage CP4-57 regulator; KEGG: bpt:Bpet4545 transcriptional regulator; phage transcriptional regulator AlpA complement(4768386..4768652) Variovorax paradoxus S110 7972809 YP_002946394.1 CDS Vapar_4521 NC_012791.1 4769048 4769443 R KEGG: atc:AGR_L_2371 hypothetical protein; hypothetical protein complement(4769048..4769443) Variovorax paradoxus S110 7972810 YP_002946395.1 CDS Vapar_4522 NC_012791.1 4769501 4771249 R PFAM: polypeptide-transport-associated domain protein ShlB-type; Hemolysin activator HlyB domain protein; KEGG: rso:RS02577 activation/secretion protein; polypeptide-transport-associated domain-containing protein ShlB-type complement(4769501..4771249) Variovorax paradoxus S110 7972811 YP_002946396.1 CDS Vapar_4523 NC_012791.1 4771326 4771934 R hypothetical protein complement(4771326..4771934) Variovorax paradoxus S110 7972812 YP_002946397.1 CDS Vapar_4524 NC_012791.1 4772018 4772968 R KEGG: shw:Sputw3181_2314 hypothetical protein; hypothetical protein complement(4772018..4772968) Variovorax paradoxus S110 7972813 YP_002946398.1 CDS Vapar_4525 NC_012791.1 4772994 4784648 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: filamentous haemagglutinin domain protein; Haemagluttinin repeat-containing protein; KEGG: rso:RS02477 hemagglutinin-related protein; filamentous hemagglutinin family outer membrane protein complement(4772994..4784648) Variovorax paradoxus S110 7972814 YP_002946399.1 CDS Vapar_4526 NC_012791.1 4785959 4787065 R KEGG: pzu:PHZ_p0293 hypothetical protein; hypothetical protein complement(4785959..4787065) Variovorax paradoxus S110 7972815 YP_002946400.1 CDS Vapar_4527 NC_012791.1 4787058 4787612 R KEGG: xfa:XFa0048 hypothetical protein; hypothetical protein complement(4787058..4787612) Variovorax paradoxus S110 7972816 YP_002946401.1 CDS Vapar_4528 NC_012791.1 4788311 4788832 R PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: azc:AZC_1503 transcriptional regulator; XRE family transcriptional regulator complement(4788311..4788832) Variovorax paradoxus S110 7972817 YP_002946402.1 CDS Vapar_4529 NC_012791.1 4789161 4789523 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rso:RSc1097 transcription regulator protein; XRE family transcriptional regulator 4789161..4789523 Variovorax paradoxus S110 7973227 YP_002946403.1 CDS Vapar_4530 NC_012791.1 4789623 4790141 R KEGG: azo:azo2032 hypothetical protein; hypothetical protein complement(4789623..4790141) Variovorax paradoxus S110 7973228 YP_002946404.1 CDS Vapar_4531 NC_012791.1 4790320 4791189 R PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: aav:Aave_1379 restriction endonuclease; restriction endonuclease complement(4790320..4791189) Variovorax paradoxus S110 7973229 YP_002946405.1 CDS Vapar_4532 NC_012791.1 4791483 4792106 D KEGG: son:SO_0670 hypothetical protein; hypothetical protein 4791483..4792106 Variovorax paradoxus S110 7973230 YP_002946406.1 CDS Vapar_4533 NC_012791.1 4792729 4793250 R PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: azc:AZC_1503 transcriptional regulator; XRE family transcriptional regulator complement(4792729..4793250) Variovorax paradoxus S110 7973231 YP_002946407.1 CDS Vapar_4534 NC_012791.1 4793490 4793732 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: tmz:Tmz1t_2338 helix-turn-helix domain protein; helix-turn-helix domain-containing protein 4793490..4793732 Variovorax paradoxus S110 7973232 YP_002946408.1 CDS Vapar_4535 NC_012791.1 4793961 4794233 R hypothetical protein complement(4793961..4794233) Variovorax paradoxus S110 7973233 YP_002946409.1 CDS Vapar_4536 NC_012791.1 4794362 4797484 R KEGG: mpt:Mpe_B0619 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(4794362..4797484) Variovorax paradoxus S110 7973234 YP_002946410.1 CDS Vapar_4537 NC_012791.1 4797495 4798832 R KEGG: mpt:Mpe_B0618 hypothetical protein; hypothetical protein complement(4797495..4798832) Variovorax paradoxus S110 7973235 YP_002946411.1 CDS Vapar_4538 NC_012791.1 4798774 4799616 R KEGG: mpt:Mpe_B0617 hypothetical protein; hypothetical protein complement(4798774..4799616) Variovorax paradoxus S110 7973236 YP_002946412.1 CDS Vapar_4539 NC_012791.1 4799777 4800709 D PFAM: protein of unknown function DUF159; KEGG: rfr:Rfer_3054 hypothetical protein; hypothetical protein 4799777..4800709 Variovorax paradoxus S110 7973237 YP_002946413.1 CDS Vapar_4540 NC_012791.1 4800822 4801019 D KEGG: spe:Spro_3550 kinase; hypothetical protein 4800822..4801019 Variovorax paradoxus S110 7973238 YP_002946414.1 CDS Vapar_4541 NC_012791.1 4801145 4801630 D KEGG: bxe:Bxe_A3890 transmembrane protein; transmembrane protein 4801145..4801630 Variovorax paradoxus S110 7973239 YP_002946415.1 CDS Vapar_4542 NC_012791.1 4801730 4801867 D hypothetical protein 4801730..4801867 Variovorax paradoxus S110 7973240 YP_002946416.1 CDS Vapar_4543 NC_012791.1 4802068 4802523 D KEGG: shw:Sputw3181_3372 hypothetical protein; hypothetical protein 4802068..4802523 Variovorax paradoxus S110 7973241 YP_002946417.1 CDS Vapar_4544 NC_012791.1 4802696 4803058 D KEGG: aba:Acid345_2788 hypothetical protein; hypothetical protein 4802696..4803058 Variovorax paradoxus S110 7973242 YP_002946418.1 CDS Vapar_4545 NC_012791.1 4803242 4803667 R KEGG: afe:Lferr_1312 hypothetical protein; hypothetical protein complement(4803242..4803667) Variovorax paradoxus S110 7973243 YP_002946419.1 CDS Vapar_4546 NC_012791.1 4803708 4804475 R PFAM: endonuclease/exonuclease/phosphatase; KEGG: ccs:CCNA_03821 exodeoxyribonuclease III; endonuclease/exonuclease/phosphatase complement(4803708..4804475) Variovorax paradoxus S110 7973244 YP_002946420.1 CDS Vapar_4547 NC_012791.1 4804860 4805258 D KEGG: xca:xccb100_3105 hypothetical protein; hypothetical protein 4804860..4805258 Variovorax paradoxus S110 7973245 YP_002946421.1 CDS Vapar_4548 NC_012791.1 4805643 4806221 D PFAM: HNH endonuclease; KEGG: mgm:Mmc1_2827 HNH nuclease; HNH endonuclease 4805643..4806221 Variovorax paradoxus S110 7973246 YP_002946422.1 CDS Vapar_4550 NC_012791.1 4806734 4807438 D KEGG: ent:Ent638_2606 hypothetical protein; hypothetical protein 4806734..4807438 Variovorax paradoxus S110 7973248 YP_002946423.1 CDS Vapar_4551 NC_012791.1 4807467 4807697 D hypothetical protein 4807467..4807697 Variovorax paradoxus S110 7973249 YP_002946424.1 CDS Vapar_4552 NC_012791.1 4807859 4807954 D hypothetical protein 4807859..4807954 Variovorax paradoxus S110 7973250 YP_002946425.1 CDS Vapar_4553 NC_012791.1 4808198 4808311 D hypothetical protein 4808198..4808311 Variovorax paradoxus S110 7973251 YP_002946426.1 CDS Vapar_4554 NC_012791.1 4808817 4809650 D hypothetical protein 4808817..4809650 Variovorax paradoxus S110 7973252 YP_002946427.1 CDS Vapar_4555 NC_012791.1 4810084 4810350 D KEGG: pol:Bpro_5523 hypothetical protein; hypothetical protein 4810084..4810350 Variovorax paradoxus S110 7973253 YP_002946428.1 CDS Vapar_4556 NC_012791.1 4810976 4811194 D hypothetical protein 4810976..4811194 Variovorax paradoxus S110 7973254 YP_002946429.1 CDS Vapar_4557 NC_012791.1 4811205 4811450 D hypothetical protein 4811205..4811450 Variovorax paradoxus S110 7973255 YP_002946430.1 CDS Vapar_4558 NC_012791.1 4811447 4811986 D PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: mms:mma_1693 micrococcal nuclease-like protein; nuclease 4811447..4811986 Variovorax paradoxus S110 7973256 YP_002946431.1 CDS Vapar_4559 NC_012791.1 4812007 4812633 R KEGG: rle:pRL80126 hypothetical protein; hypothetical protein complement(4812007..4812633) Variovorax paradoxus S110 7973257 YP_002946432.1 CDS Vapar_4560 NC_012791.1 4812623 4812748 R hypothetical protein complement(4812623..4812748) Variovorax paradoxus S110 7973258 YP_002946433.1 CDS Vapar_4561 NC_012791.1 4813072 4813371 R hypothetical protein complement(4813072..4813371) Variovorax paradoxus S110 7973259 YP_002946434.1 CDS Vapar_4562 NC_012791.1 4813756 4814277 R PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: azc:AZC_1503 transcriptional regulator; XRE family transcriptional regulator complement(4813756..4814277) Variovorax paradoxus S110 7973260 YP_002946435.1 CDS Vapar_4563 NC_012791.1 4814545 4814787 D SMART: helix-turn-helix domain protein; KEGG: bte:BTH_II1559 DNA-binding protein; XRE family transcriptional regulator 4814545..4814787 Variovorax paradoxus S110 7973261 YP_002946436.1 CDS Vapar_4564 NC_012791.1 4814902 4815966 R SMART: HNH nuclease; KEGG: pna:Pnap_4871 HNH nuclease; HNH nuclease complement(4814902..4815966) Variovorax paradoxus S110 7973262 YP_002946437.1 CDS Vapar_4565 NC_012791.1 4815963 4816355 R PFAM: histidine triad (HIT) protein; KEGG: pna:Pnap_4872 histidine triad (HIT) protein; histidine triad (HIT) protein complement(4815963..4816355) Variovorax paradoxus S110 7973263 YP_002946438.1 CDS Vapar_4566 NC_012791.1 4816362 4817504 R KEGG: rfr:Rfer_1210 hypothetical protein; hypothetical protein complement(4816362..4817504) Variovorax paradoxus S110 7973264 YP_002946439.1 CDS Vapar_4567 NC_012791.1 4818231 4820357 R KEGG: tmz:Tmz1t_1847 exodeoxyribonuclease V, alpha subunit; TIGRFAM: exodeoxyribonuclease V, subunit alpha; SMART: ATPase AAA; exodeoxyribonuclease V subunit alpha complement(4818231..4820357) Variovorax paradoxus S110 7973265 YP_002946440.1 CDS Vapar_4568 NC_012791.1 4820354 4824145 R KEGG: dac:Daci_0521 exodeoxyribonuclease V, beta subunit; TIGRFAM: exodeoxyribonuclease V, subunit beta; PFAM: UvrD/REP helicase; exodeoxyribonuclease V subunit beta complement(4820354..4824145) Variovorax paradoxus S110 7973266 YP_002946441.1 CDS Vapar_4569 NC_012791.1 4824145 4827654 R KEGG: tmz:Tmz1t_1849 exodeoxyribonuclease V, gamma subunit; TIGRFAM: exodeoxyribonuclease V, subunit gamma; PFAM: exodeoxyribonuclease V RecC subunit; exodeoxyribonuclease V subunit gamma complement(4824145..4827654) Variovorax paradoxus S110 7973267 YP_002946442.1 CDS Vapar_4570 NC_012791.1 4827933 4828376 R KEGG: pna:Pnap_3931 hypothetical protein; hypothetical protein complement(4827933..4828376) Variovorax paradoxus S110 7973268 YP_002946443.1 CDS Vapar_4571 NC_012791.1 4828373 4829443 R KEGG: hhe:HH0947 hypothetical protein; hypothetical protein complement(4828373..4829443) Variovorax paradoxus S110 7973269 YP_002946444.1 CDS Vapar_4572 NC_012791.1 4829525 4830808 R PFAM: protein of unknown function DUF445; KEGG: ent:Ent638_0507 hypothetical protein; hypothetical protein complement(4829525..4830808) Variovorax paradoxus S110 7973270 YP_002946445.1 CDS Vapar_4573 NC_012791.1 4831080 4831715 R KEGG: rde:RD1_3148 hypothetical protein; hypothetical protein complement(4831080..4831715) Variovorax paradoxus S110 7973271 YP_002946446.1 CDS Vapar_4574 NC_012791.1 4831768 4832367 R KEGG: ppg:PputGB1_3190 hypothetical protein; hypothetical protein complement(4831768..4832367) Variovorax paradoxus S110 7973272 YP_002946447.1 CDS Vapar_4575 NC_012791.1 4833280 4834260 R KEGG: ajs:Ajs_0810 hypothetical protein; hypothetical protein complement(4833280..4834260) Variovorax paradoxus S110 7973273 YP_002946448.1 CDS Vapar_4576 NC_012791.1 4834272 4835873 R SMART: ATPase AAA; KEGG: tmz:Tmz1t_1706 NERD domain protein; ATPase AAA complement(4834272..4835873) Variovorax paradoxus S110 7973274 YP_002946449.1 CDS Vapar_4577 NC_012791.1 4836143 4836664 D PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: hha:Hhal_0909 appr-1-p processing domain-containing protein; Appr-1-p processing domain-containing protein 4836143..4836664 Variovorax paradoxus S110 7973275 YP_002946450.1 CDS Vapar_4578 NC_012791.1 4837303 4838886 D PFAM: protein of unknown function DUF88; KEGG: tmz:Tmz1t_0344 protein of unknown function DUF88; hypothetical protein 4837303..4838886 Variovorax paradoxus S110 7973276 YP_002946451.1 CDS Vapar_4579 NC_012791.1 4839143 4842682 R PFAM: SMC domain protein; KEGG: pna:Pnap_1663 hypothetical protein; SMC domain-containing protein complement(4839143..4842682) Variovorax paradoxus S110 7973277 YP_002946452.1 CDS Vapar_4580 NC_012791.1 4842679 4843968 R PFAM: metallophosphoesterase; KEGG: pna:Pnap_1662 metallophosphoesterase; metallophosphoesterase complement(4842679..4843968) Variovorax paradoxus S110 7973278 YP_002946453.1 CDS Vapar_4581 NC_012791.1 4844194 4845399 R KEGG: cti:pRALTA_0050 hypothetical protein; hypothetical protein complement(4844194..4845399) Variovorax paradoxus S110 7973279 YP_002946454.1 CDS Vapar_4582 NC_012791.1 4845402 4849088 R KEGG: hch:HCH_06867 hypothetical protein; Sigma 54 interacting domain-containing protein complement(4845402..4849088) Variovorax paradoxus S110 7973280 YP_002946455.1 CDS Vapar_4583 NC_012791.1 4849085 4849774 R KEGG: cti:pRALTA_0048 hypothetical protein; hypothetical protein complement(4849085..4849774) Variovorax paradoxus S110 7973281 YP_002946456.1 CDS Vapar_4584 NC_012791.1 4849788 4851230 R KEGG: cti:pRALTA_0047 hypothetical protein; hypothetical protein complement(4849788..4851230) Variovorax paradoxus S110 7973282 YP_002946457.1 CDS Vapar_4585 NC_012791.1 4851523 4855398 R PFAM: SNF2-related protein; restriction endonuclease; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: bpt:Bpet0222 helicase; SNF2-like protein complement(4851523..4855398) Variovorax paradoxus S110 7973283 YP_002946458.1 CDS Vapar_4586 NC_012791.1 4855398 4857122 R KEGG: cti:RALTA_A0828 hypothetical protein; hypothetical protein complement(4855398..4857122) Variovorax paradoxus S110 7973284 YP_002946459.1 CDS Vapar_4587 NC_012791.1 4857116 4857820 R KEGG: pcr:Pcryo_0954 hypothetical protein; hypothetical protein complement(4857116..4857820) Variovorax paradoxus S110 7973285 YP_002946460.1 CDS Vapar_4588 NC_012791.1 4857822 4859825 R KEGG: pcr:Pcryo_0953 hypothetical protein; methyl-accepting chemotaxis sensory transducer complement(4857822..4859825) Variovorax paradoxus S110 7973286 YP_002946461.1 CDS Vapar_4589 NC_012791.1 4859822 4860028 R KEGG: aeh:Mlg_1537 hypothetical protein; hypothetical protein complement(4859822..4860028) Variovorax paradoxus S110 7973287 YP_002946462.1 CDS Vapar_4590 NC_012791.1 4860277 4861221 D hypothetical protein 4860277..4861221 Variovorax paradoxus S110 7973288 YP_002946463.1 CDS Vapar_4592 NC_012791.1 4863016 4866009 R PFAM: type III restriction protein res subunit; KEGG: dac:Daci_4204 type III restriction protein res subunit; type III site-specific deoxyribonuclease complement(4863016..4866009) Variovorax paradoxus S110 7973290 YP_002946464.1 CDS Vapar_4593 NC_012791.1 4866020 4867894 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mgm:Mmc1_0787 site-specific DNA-methyltransferase (adenine-specific); adenine-specific DNA-methyltransferase complement(4866020..4867894) Variovorax paradoxus S110 7973291 YP_002946465.1 CDS Vapar_4594 NC_012791.1 4867929 4870052 R PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: dol:Dole_2238 hypothetical protein; hypothetical protein complement(4867929..4870052) Variovorax paradoxus S110 7973292 YP_002946466.1 CDS Vapar_4595 NC_012791.1 4870049 4870858 R KEGG: bpt:Bpet4235 hypothetical protein; hypothetical protein complement(4870049..4870858) Variovorax paradoxus S110 7973293 YP_002946467.1 CDS Vapar_4596 NC_012791.1 4870855 4873536 R KEGG: ppd:Ppro_0239 hypothetical protein; hypothetical protein complement(4870855..4873536) Variovorax paradoxus S110 7973294 YP_002946468.1 CDS Vapar_4597 NC_012791.1 4873546 4876755 R PFAM: helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: aav:Aave_0157 helicase domain-containing protein; helicase domain-containing protein complement(4873546..4876755) Variovorax paradoxus S110 7973295 YP_002946469.1 CDS Vapar_4598 NC_012791.1 4876752 4876982 R TIGRFAM: DNA binding domain protein, excisionase family; KEGG: aav:Aave_0156 DNA binding domain-containing protein; excisionase family DNA binding domain-containing protein complement(4876752..4876982) Variovorax paradoxus S110 7973296 YP_002946470.1 CDS Vapar_4599 NC_012791.1 4877764 4878207 R KEGG: aeh:Mlg_2170 OmpA/MotB domain-containing protein; hypothetical protein complement(4877764..4878207) Variovorax paradoxus S110 7973297 YP_002946471.1 CDS Vapar_4600 NC_012791.1 4878267 4879499 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: ppw:PputW619_4383 HlyD family type I secretion membrane fusion protein; HlyD family type I secretion membrane fusion protein complement(4878267..4879499) Variovorax paradoxus S110 7973298 YP_002946472.1 CDS Vapar_4601 NC_012791.1 4879496 4881688 R KEGG: ppw:PputW619_4382 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; type I secretion system ATPase complement(4879496..4881688) Variovorax paradoxus S110 7973299 YP_002946473.1 CDS Vapar_4602 NC_012791.1 4881685 4883019 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ppf:Pput_0829 TolC family type I secretion outer membrane protein; TolC family type I secretion outer membrane protein complement(4881685..4883019) Variovorax paradoxus S110 7973300 YP_002946474.1 CDS Vapar_4603 NC_012791.1 4883092 4888695 R KEGG: cja:CJA_1396 hemolysin; TIGRFAM: outer membrane adhesin like proteiin; PFAM: von Willebrand factor type A; cadherin; coagulase; SMART: von Willebrand factor type A; cadherin; outer membrane adhesin-like protein complement(4883092..4888695) Variovorax paradoxus S110 7973301 YP_002946475.1 CDS Vapar_4604 NC_012791.1 4889094 4889939 D PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bur:Bcep18194_C7377 two component AraC family transcriptional regulator; two component AraC family transcriptional regulator 4889094..4889939 Variovorax paradoxus S110 7973302 YP_002946476.1 CDS Vapar_4605 NC_012791.1 4890021 4890836 R PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn-helix- domain containing protein AraC type; KEGG: bpy:Bphyt_2397 two component AraC family transcriptional regulator; two component AraC family transcriptional regulator complement(4890021..4890836) Variovorax paradoxus S110 7973303 YP_002946477.1 CDS Vapar_4606 NC_012791.1 4890967 4891680 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: mfa:Mfla_2394 two component transcriptional regulator; winged helix family two component transcriptional regulator complement(4890967..4891680) Variovorax paradoxus S110 7973304 YP_002946478.1 CDS Vapar_4607 NC_012791.1 4891709 4893799 D PFAM: ATP-binding region ATPase domain protein; Diverse 7TM receptor extracellular region 2; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mfa:Mfla_2395 periplasmic sensor signal transduction histidine kinase; histidine kinase 4891709..4893799 Variovorax paradoxus S110 7973305 YP_002946479.1 CDS Vapar_4608 NC_012791.1 4893819 4896134 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pap:PSPA7_0271 TonB-dependent receptor; TonB-dependent receptor complement(4893819..4896134) Variovorax paradoxus S110 7973306 YP_002946480.1 CDS Vapar_4609 NC_012791.1 4896207 4897163 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bpy:Bphyt_6076 AraC family transcriptional regulator; AraC family transcriptional regulator complement(4896207..4897163) Variovorax paradoxus S110 7973307 YP_002946481.1 CDS Vapar_4610 NC_012791.1 4897292 4897564 D KEGG: pfo:Pfl01_2091 hypothetical protein; hypothetical protein 4897292..4897564 Variovorax paradoxus S110 7972820 YP_002946482.1 CDS Vapar_4611 NC_012791.1 4898055 4898264 R hypothetical protein complement(4898055..4898264) Variovorax paradoxus S110 7972821 YP_002946483.1 CDS Vapar_4612 NC_012791.1 4898409 4899155 R PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: pna:Pnap_3343 1-acyl-sn-glycerol-3-phosphate acyltransferases; phospholipid/glycerol acyltransferase complement(4898409..4899155) Variovorax paradoxus S110 7972822 YP_002946484.1 CDS Vapar_4613 NC_012791.1 4899172 4900455 R KEGG: aav:Aave_0911 dihydroorotase; dihydroorotase complement(4899172..4900455) Variovorax paradoxus S110 7972823 YP_002946485.1 CDS pyrB NC_012791.1 4900595 4901557 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(4900595..4901557) Variovorax paradoxus S110 7972824 YP_002946486.1 CDS Vapar_4615 NC_012791.1 4901557 4902054 R KEGG: dia:Dtpsy_2894 phosphoribosyltransferase; uracil phosphoribosyltransferase complement(4901557..4902054) Variovorax paradoxus S110 7972825 YP_002946487.1 CDS Vapar_4616 NC_012791.1 4902051 4902512 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(4902051..4902512) Variovorax paradoxus S110 7972826 YP_002946488.1 CDS Vapar_4617 NC_012791.1 4902512 4903111 R PFAM: protein of unknown function DUF179; KEGG: pol:Bpro_1142 protein of unknown function DUF179; hypothetical protein complement(4902512..4903111) Variovorax paradoxus S110 7972827 YP_002946489.1 CDS Vapar_4618 NC_012791.1 4903112 4904659 D PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: aav:Aave_0906 deoxyribodipyrimidine photo-lyase type I; deoxyribodipyrimidine photo-lyase 4903112..4904659 Variovorax paradoxus S110 7972828 YP_002946490.1 CDS Vapar_4619 NC_012791.1 4904610 4905002 R hypothetical protein complement(4904610..4905002) Variovorax paradoxus S110 7972829 YP_002946491.1 CDS Vapar_4620 NC_012791.1 4904999 4906636 R KEGG: dac:Daci_2335 hypothetical protein; hypothetical protein complement(4904999..4906636) Variovorax paradoxus S110 7972830 YP_002946492.1 CDS Vapar_4621 NC_012791.1 4906856 4907938 D PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: reu:Reut_B5477 regulatory protein, LuxR; LuxR family transcriptional regulator 4906856..4907938 Variovorax paradoxus S110 7972831 YP_002946493.1 CDS Vapar_4622 NC_012791.1 4907960 4914028 R PFAM: response regulator receiver; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: pol:Bpro_1140 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(4907960..4914028) Variovorax paradoxus S110 7972832 YP_002946494.1 CDS Vapar_4623 NC_012791.1 4914163 4916475 R PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: pol:Bpro_1139 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4914163..4916475) Variovorax paradoxus S110 7972833 YP_002946495.1 CDS Vapar_4624 NC_012791.1 4916518 4917051 R PFAM: CheW domain protein; KEGG: pol:Bpro_1138 CheW-like protein; CheW protein complement(4916518..4917051) Variovorax paradoxus S110 7972834 YP_002946496.1 CDS Vapar_4625 NC_012791.1 4917071 4917436 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pna:Pnap_3353 response regulator receiver protein; response regulator receiver protein complement(4917071..4917436) Variovorax paradoxus S110 7972835 YP_002946497.1 CDS Vapar_4626 NC_012791.1 4917437 4917835 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rfr:Rfer_1371 response regulator receiver domain-containing protein; response regulator receiver protein complement(4917437..4917835) Variovorax paradoxus S110 7972836 YP_002946498.1 CDS Vapar_4627 NC_012791.1 4917918 4918088 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cti:RALTA_A0721 rubredoxin; Rubredoxin-type Fe(Cys)4 protein complement(4917918..4918088) Variovorax paradoxus S110 7972837 YP_002946499.1 CDS Vapar_4628 NC_012791.1 4918200 4919165 D PFAM: phosphomethylpyrimidine kinase type-1; KEGG: pol:Bpro_1134 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase type-1 4918200..4919165 Variovorax paradoxus S110 7972838 YP_002946500.1 CDS Vapar_4629 NC_012791.1 4919165 4920460 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 4919165..4920460 Variovorax paradoxus S110 7972839 YP_002946501.1 CDS purH NC_012791.1 4920509 4922116 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(4920509..4922116) Variovorax paradoxus S110 7972840 YP_002946502.1 CDS Vapar_4631 NC_012791.1 4922137 4922373 R PFAM: helix-turn-helix Fis-type; KEGG: pol:Bpro_1131 DNA-binding protein fis; Fis family transcriptional regulator complement(4922137..4922373) Variovorax paradoxus S110 7972841 YP_002946503.1 CDS Vapar_4632 NC_012791.1 4922393 4923451 R TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase; KEGG: pol:Bpro_1130 dihydrouridine synthase TIM-barrel protein nifR3; hypothetical protein complement(4922393..4923451) Variovorax paradoxus S110 7972842 YP_002946504.1 CDS Vapar_4633 NC_012791.1 4923633 4924103 D KEGG: pna:Pnap_3361 hypothetical protein; hypothetical protein 4923633..4924103 Variovorax paradoxus S110 7972843 YP_002946505.1 CDS Vapar_4634 NC_012791.1 4924114 4924788 R PFAM: glutathione S-transferase domain; KEGG: bxe:Bxe_B0273 glutathione S-transferase; glutathione transferase complement(4924114..4924788) Variovorax paradoxus S110 7972844 YP_002946506.1 CDS Vapar_4635 NC_012791.1 4924798 4925889 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(4924798..4925889) Variovorax paradoxus S110 7972845 YP_002946507.1 CDS Vapar_4636 NC_012791.1 4926105 4927061 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: aav:Aave_4196 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 4926105..4927061 Variovorax paradoxus S110 7972846 YP_002946508.1 CDS Vapar_4637 NC_012791.1 4927101 4928720 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_2132 ABC transporter; ABC transporter 4927101..4928720 Variovorax paradoxus S110 7972847 YP_002946509.1 CDS Vapar_4638 NC_012791.1 4928717 4929700 D PFAM: inner-membrane translocator; KEGG: vei:Veis_2131 inner-membrane translocator; inner-membrane translocator 4928717..4929700 Variovorax paradoxus S110 7972848 YP_002946510.1 CDS Vapar_4639 NC_012791.1 4929727 4930800 D PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: aav:Aave_4199 LacI family transcription regulator; LacI family transcriptional regulator 4929727..4930800 Variovorax paradoxus S110 7972849 YP_002946511.1 CDS Vapar_4640 NC_012791.1 4930854 4931771 D TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: aav:Aave_4200 ribokinase; ribokinase 4930854..4931771 Variovorax paradoxus S110 7972850 YP_002946512.1 CDS Vapar_4641 NC_012791.1 4931768 4932166 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4931768..4932166 Variovorax paradoxus S110 7972851 YP_002946513.1 CDS Vapar_4642 NC_012791.1 4932177 4933112 R PFAM: MOSC domain protein beta barrel domain protein; MOSC domain containing protein; KEGG: pna:Pnap_3365 MOSC domain-containing protein; MOSC domain-containing protein beta barrel domain-containing protein complement(4932177..4933112) Variovorax paradoxus S110 7972852 YP_002946514.1 CDS Vapar_4643 NC_012791.1 4933156 4934292 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: aav:Aave_0885 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Ubiquinone biosynthesis hydroxylase 4933156..4934292 Variovorax paradoxus S110 7972853 YP_002946515.1 CDS Vapar_4644 NC_012791.1 4934313 4935035 D KEGG: rfr:Rfer_1575 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 4934313..4935035 Variovorax paradoxus S110 7972854 YP_002946516.1 CDS Vapar_4645 NC_012791.1 4935035 4936891 D PFAM: peptidase M61 domain protein; KEGG: pol:Bpro_1123 peptidase M61; peptidase M61 domain-containing protein 4935035..4936891 Variovorax paradoxus S110 7972855 YP_002946517.1 CDS Vapar_4646 NC_012791.1 4936950 4937729 D PFAM: enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_1529 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4936950..4937729 Variovorax paradoxus S110 7972856 YP_002946518.1 CDS Vapar_4647 NC_012791.1 4937740 4938129 R hypothetical protein complement(4937740..4938129) Variovorax paradoxus S110 7972857 YP_002946519.1 CDS Vapar_4648 NC_012791.1 4939002 4939670 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: mpt:Mpe_A0105 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein; ECF subfamily RNA polymerase sigma-24 subunit complement(4939002..4939670) Variovorax paradoxus S110 7972858 YP_002946520.1 CDS Vapar_4649 NC_012791.1 4940359 4941021 R KEGG: rpe:RPE_2433 hypothetical protein; hypothetical protein complement(4940359..4941021) Variovorax paradoxus S110 7972860 YP_002946521.1 CDS Vapar_4650 NC_012791.1 4942179 4942841 R PFAM: 2OG-Fe(II) oxygenase; KEGG: dac:Daci_3795 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(4942179..4942841) Variovorax paradoxus S110 7972861 YP_002946522.1 CDS Vapar_4651 NC_012791.1 4942838 4944292 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: pna:Pnap_2093 GntR family transcriptional regulator; GntR family transcriptional regulator with aminotransferase domain complement(4942838..4944292) Variovorax paradoxus S110 7972862 YP_002946523.1 CDS Vapar_4652 NC_012791.1 4944394 4944582 D KEGG: aav:Aave_3904 transmembrane protein; transmembrane protein 4944394..4944582 Variovorax paradoxus S110 7972863 YP_002946524.1 CDS Vapar_4653 NC_012791.1 4944579 4945310 D KEGG: mpt:Mpe_A0754 cytochrome C; cytochrome C 4944579..4945310 Variovorax paradoxus S110 7972864 YP_002946525.1 CDS Vapar_4654 NC_012791.1 4945318 4946607 D PFAM: cytochrome C class I; KEGG: mpt:Mpe_A0755 alcohol dehydrogenase cytochrome C subunit precursor; gluconate 2-dehydrogenase (acceptor) 4945318..4946607 Variovorax paradoxus S110 7972865 YP_002946526.1 CDS Vapar_4655 NC_012791.1 4946639 4947508 R PFAM: metallophosphoesterase; KEGG: dia:Dtpsy_1122 metallophosphoesterase; metallophosphoesterase complement(4946639..4947508) Variovorax paradoxus S110 7972866 YP_002946527.1 CDS Vapar_4656 NC_012791.1 4947600 4948559 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: reh:H16_A0270 Co/Zn/Cd efflux system component; cation diffusion facilitator family transporter complement(4947600..4948559) Variovorax paradoxus S110 7972867 YP_002946528.1 CDS ruvB NC_012791.1 4948566 4949630 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(4948566..4949630) Variovorax paradoxus S110 7972868 YP_002946529.1 CDS Vapar_4658 NC_012791.1 4949717 4950319 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: azo:azo0663 CDP-alcohol phosphatidyltransferase family protein; CDP-alcohol phosphatidyltransferase 4949717..4950319 Variovorax paradoxus S110 7972869 YP_002946530.1 CDS Vapar_4659 NC_012791.1 4950363 4952135 D PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_6196 hypothetical protein; alpha/beta hydrolase fold protein 4950363..4952135 Variovorax paradoxus S110 7972870 YP_002946531.1 CDS Vapar_4660 NC_012791.1 4952155 4953504 D PFAM: Dual specificity protein phosphatase; KEGG: smt:Smal_3658 dual specificity phosphatase; Dual specificity protein phosphatase 4952155..4953504 Variovorax paradoxus S110 7972871 YP_002946532.1 CDS Vapar_4661 NC_012791.1 4953497 4953937 D KEGG: pmy:Pmen_0007 hypothetical protein; hypothetical protein 4953497..4953937 Variovorax paradoxus S110 7972872 YP_002946533.1 CDS Vapar_4662 NC_012791.1 4953985 4954665 D PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: cti:RALTA_A1715 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4953985..4954665 Variovorax paradoxus S110 7972873 YP_002946534.1 CDS Vapar_4663 NC_012791.1 4954662 4955615 D PFAM: phosphatidate cytidylyltransferase; KEGG: reh:H16_A2088 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 4954662..4955615 Variovorax paradoxus S110 7972874 YP_002946535.1 CDS Vapar_4664 NC_012791.1 4955612 4956202 D KEGG: bcm:Bcenmc03_4043 hypothetical protein; hypothetical protein 4955612..4956202 Variovorax paradoxus S110 7972875 YP_002946536.1 CDS Vapar_4665 NC_012791.1 4956231 4956803 R KEGG: pol:Bpro_4094 Holliday junction DNA helicase motor protein; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA complement(4956231..4956803) Variovorax paradoxus S110 7972876 YP_002946537.1 CDS Vapar_4666 NC_012791.1 4956824 4957774 D PFAM: PhoH family protein; KEGG: dia:Dtpsy_0492 PhoH family protein; PhoH family protein 4956824..4957774 Variovorax paradoxus S110 7972877 YP_002946538.1 CDS Vapar_4667 NC_012791.1 4957776 4958234 D PFAM: protein of unknown function UPF0054; KEGG: pna:Pnap_0508 hypothetical protein; hypothetical protein 4957776..4958234 Variovorax paradoxus S110 7972878 YP_002946539.1 CDS Vapar_4668 NC_012791.1 4958253 4958693 R TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: pol:Bpro_4098 D-tyrosyl-tRNA deacylase; D-tyrosyl-tRNA(Tyr) deacylase complement(4958253..4958693) Variovorax paradoxus S110 7972879 YP_002946540.1 CDS Vapar_4669 NC_012791.1 4958690 4959688 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pol:Bpro_4099 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(4958690..4959688) Variovorax paradoxus S110 7972880 YP_002946541.1 CDS Vapar_4670 NC_012791.1 4959745 4960239 D KEGG: bpy:Bphyt_2086 hypothetical protein; hypothetical protein 4959745..4960239 Variovorax paradoxus S110 7972881 YP_002946542.1 CDS Vapar_4671 NC_012791.1 4960236 4960853 D PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_1992 OmpA/MotB; OmpA/MotB domain-containing protein 4960236..4960853 Variovorax paradoxus S110 7972882 YP_002946543.1 CDS Vapar_4672 NC_012791.1 4960888 4962120 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(4960888..4962120) Variovorax paradoxus S110 7972883 YP_002946544.1 CDS Vapar_4673 NC_012791.1 4962278 4963618 D PFAM: peptidase M23; KEGG: ajs:Ajs_0631 peptidase M23B; peptidase M23 4962278..4963618 Variovorax paradoxus S110 7972884 YP_002946545.1 CDS anmK NC_012791.1 4963650 4964777 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 4963650..4964777 Variovorax paradoxus S110 7972885 YP_002946546.1 CDS Vapar_4675 NC_012791.1 4964794 4966224 R PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_4048 major facilitator superfamily transporter; major facilitator superfamily protein complement(4964794..4966224) Variovorax paradoxus S110 7972886 YP_002946547.1 CDS Vapar_4676 NC_012791.1 4966326 4966691 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(4966326..4966691) Variovorax paradoxus S110 7972887 YP_002946548.1 CDS Vapar_4677 NC_012791.1 4966871 4967263 R PFAM: ribosomal protein S9; KEGG: dac:Daci_5913 ribosomal protein S9; 30S ribosomal protein S9 complement(4966871..4967263) Variovorax paradoxus S110 7972888 YP_002946549.1 CDS rplM NC_012791.1 4967276 4967707 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4967276..4967707) Variovorax paradoxus S110 7972889 YP_002946550.1 CDS Vapar_4679 NC_012791.1 4967925 4968887 D PFAM: protein of unknown function DUF519; KEGG: rfr:Rfer_0720 hypothetical protein; hypothetical protein 4967925..4968887 Variovorax paradoxus S110 7972890 YP_002946551.1 CDS Vapar_4680 NC_012791.1 4968909 4969508 R TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pol:Bpro_4129 lipoprotein A; lipoprotein A complement(4968909..4969508) Variovorax paradoxus S110 7972891 YP_002946552.1 CDS Vapar_4681 NC_012791.1 4969598 4970422 R KEGG: aav:Aave_4058 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(4969598..4970422) Variovorax paradoxus S110 7972892 YP_002946553.1 CDS Vapar_4682 NC_012791.1 4970432 4971223 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pna:Pnap_0490 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ complement(4970432..4971223) Variovorax paradoxus S110 7972893 YP_002946554.1 CDS Vapar_4683 NC_012791.1 4971223 4972662 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(4971223..4972662) Variovorax paradoxus S110 7972894 YP_002946555.1 CDS Vapar_4684 NC_012791.1 4972915 4973562 D KEGG: rpi:Rpic_0523 hypothetical protein; hypothetical protein 4972915..4973562 Variovorax paradoxus S110 7972895 YP_002946556.1 CDS Vapar_4685 NC_012791.1 4973698 4974189 D TIGRFAM: phasin family protein; KEGG: bxe:Bxe_B0720 phasin; phasin family protein 4973698..4974189 Variovorax paradoxus S110 7972896 YP_002946557.1 CDS prfC NC_012791.1 4974267 4975895 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4974267..4975895 Variovorax paradoxus S110 7972897 YP_002946558.1 CDS Vapar_4687 NC_012791.1 4975903 4976706 R PFAM: protein of unknown function DUF990; KEGG: dac:Daci_5807 hypothetical protein; hypothetical protein complement(4975903..4976706) Variovorax paradoxus S110 7972898 YP_002946559.1 CDS Vapar_4688 NC_012791.1 4977019 4977861 R KEGG: reu:Reut_A1068 ABC transporter permease protein; ABC transporter permease complement(4977019..4977861) Variovorax paradoxus S110 7972899 YP_002946560.1 CDS Vapar_4689 NC_012791.1 4977858 4978853 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: reu:Reut_A1069 ABC transporter; ABC transporter complement(4977858..4978853) Variovorax paradoxus S110 7972900 YP_002946561.1 CDS Vapar_4690 NC_012791.1 4978954 4979781 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; KEGG: pol:Bpro_4133 HAD-superfamily hydrolase subfamily IIB; HAD superfamily hydrolase 4978954..4979781 Variovorax paradoxus S110 7971700 YP_002946562.1 CDS Vapar_4691 NC_012791.1 4979813 4980787 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_4137 uncharacterized protein UPF0065; hypothetical protein complement(4979813..4980787) Variovorax paradoxus S110 7971701 YP_002946563.1 CDS Vapar_4692 NC_012791.1 4980888 4981949 R PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_2707 histone deacetylase superfamily; histone deacetylase complement(4980888..4981949) Variovorax paradoxus S110 7971702 YP_002946564.1 CDS Vapar_4693 NC_012791.1 4981946 4982995 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(4981946..4982995) Variovorax paradoxus S110 7971703 YP_002946565.1 CDS Vapar_4694 NC_012791.1 4983158 4984567 R PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_2911 GntR family transcriptional regulator; GntR family transcriptional regulator with aminotransferase domain complement(4983158..4984567) Variovorax paradoxus S110 7971704 YP_002946566.1 CDS Vapar_4695 NC_012791.1 4984731 4986023 D TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: pol:Bpro_2912 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase 4984731..4986023 Variovorax paradoxus S110 7971705 YP_002946567.1 CDS Vapar_4696 NC_012791.1 4986047 4987141 D KEGG: pol:Bpro_2913 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; spermidine/putrescine ABC transporter ATPase 4986047..4987141 Variovorax paradoxus S110 7971706 YP_002946568.1 CDS Vapar_4697 NC_012791.1 4987194 4988222 D PFAM: extracellular solute-binding protein family 1; KEGG: pol:Bpro_2914 extracellular solute-binding protein, family 1; family 1 extracellular solute-binding protein 4987194..4988222 Variovorax paradoxus S110 7971707 YP_002946569.1 CDS Vapar_4698 NC_012791.1 4988241 4989497 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2915 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 4988241..4989497 Variovorax paradoxus S110 7971708 YP_002946570.1 CDS Vapar_4699 NC_012791.1 4989520 4990338 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2916 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 4989520..4990338 Variovorax paradoxus S110 7971709 YP_002946571.1 CDS Vapar_4700 NC_012791.1 4990354 4991310 D TIGRFAM: agmatinase; PFAM: arginase/agmatinase/formiminoglutamase; KEGG: pna:Pnap_2635 agmatinase; agmatinase 4990354..4991310 Variovorax paradoxus S110 7971710 YP_002946572.1 CDS Vapar_4701 NC_012791.1 4991658 4993130 D KEGG: pol:Bpro_2917 succinate semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinic semialdehyde dehydrogenase 4991658..4993130 Variovorax paradoxus S110 7971711 YP_002946573.1 CDS Vapar_4702 NC_012791.1 4993170 4999115 R KEGG: aav:Aave_4341 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter; SMART: ATPase AAA; excinuclease ABC subunit A complement(4993170..4999115) Variovorax paradoxus S110 7971712 YP_002946574.1 CDS Vapar_4703 NC_012791.1 4999286 5000392 D PFAM: extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4999286..5000392 Variovorax paradoxus S110 7971713 YP_002946575.1 CDS Vapar_4704 NC_012791.1 5000528 5001643 D PFAM: extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor; extracellular ligand-binding receptor 5000528..5001643 Variovorax paradoxus S110 7971714 YP_002946576.1 CDS Vapar_4705 NC_012791.1 5001666 5001815 R KEGG: dia:Dtpsy_3031 hypothetical protein; hypothetical protein complement(5001666..5001815) Variovorax paradoxus S110 7971715 YP_002946577.1 CDS Vapar_4706 NC_012791.1 5001939 5003633 R PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_3033 major facilitator superfamily MFS_1; general substrate transporter complement(5001939..5003633) Variovorax paradoxus S110 7971716 YP_002946578.1 CDS Vapar_4707 NC_012791.1 5003800 5004444 R PFAM: DSBA oxidoreductase; KEGG: pna:Pnap_0479 DsbA oxidoreductase; DSBA oxidoreductase complement(5003800..5004444) Variovorax paradoxus S110 7971717 YP_002946579.1 CDS Vapar_4708 NC_012791.1 5004441 5004719 R PFAM: protein of unknown function DUF1289; KEGG: bxe:Bxe_A4272 hypothetical protein; hypothetical protein complement(5004441..5004719) Variovorax paradoxus S110 7971718 YP_002946580.1 CDS Vapar_4709 NC_012791.1 5004716 5005204 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: aav:Aave_4348 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated protein complement(5004716..5005204) Variovorax paradoxus S110 7971719 YP_002946581.1 CDS Vapar_4710 NC_012791.1 5005208 5006128 R PFAM: pyruvate carboxyltransferase; KEGG: dac:Daci_5964 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(5005208..5006128) Variovorax paradoxus S110 7971720 YP_002946582.1 CDS Vapar_4711 NC_012791.1 5006268 5006561 R PFAM: acylphosphatase; KEGG: ajs:Ajs_4152 acylphosphatase; acylphosphatase complement(5006268..5006561) Variovorax paradoxus S110 7971721 YP_002946583.1 CDS Vapar_4712 NC_012791.1 5006575 5007744 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: bpt:Bpet2157 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(5006575..5007744) Variovorax paradoxus S110 7971722 YP_002946584.1 CDS Vapar_4713 NC_012791.1 5007741 5008967 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet2158 acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F complement(5007741..5008967) Variovorax paradoxus S110 7971723 YP_002946585.1 CDS Vapar_4714 NC_012791.1 5009092 5010105 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4520 hypothetical protein; hypothetical protein complement(5009092..5010105) Variovorax paradoxus S110 7971724 YP_002946586.1 CDS Vapar_4715 NC_012791.1 5010131 5010514 R PFAM: cupin; protein of unknown function DUF861 cupin_3; KEGG: cti:RALTA_A2099 conserved hypothetical protein, RmlC-like cupin domain; cupin complement(5010131..5010514) Variovorax paradoxus S110 7971725 YP_002946587.1 CDS Vapar_4716 NC_012791.1 5010523 5011260 R PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: bpt:Bpet2156 IclR family transcriptional regulator; IclR family transcriptional regulator complement(5010523..5011260) Variovorax paradoxus S110 7971726 YP_002946588.1 CDS Vapar_4717 NC_012791.1 5011355 5012275 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: aav:Aave_4350 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(5011355..5012275) Variovorax paradoxus S110 7971727 YP_002946589.1 CDS Vapar_4718 NC_012791.1 5012396 5012710 D PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: xcc:XCC1802 hypothetical protein; Ethyl tert-butyl ether degradation EthD 5012396..5012710 Variovorax paradoxus S110 7971728 YP_002946590.1 CDS Vapar_4719 NC_012791.1 5012707 5014710 R PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: pol:Bpro_4157 3-methylcrotonoyl-CoA carboxylase, subunit alpha; carbamoyl-phosphate synthase L chain ATP-binding complement(5012707..5014710) Variovorax paradoxus S110 7971729 YP_002946591.1 CDS Vapar_4720 NC_012791.1 5014703 5015374 R KEGG: pna:Pnap_0474 transmembrane protein; transmembrane protein complement(5014703..5015374) Variovorax paradoxus S110 7971730 YP_002946592.1 CDS Vapar_4721 NC_012791.1 5015385 5016173 R PFAM: enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_3042 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(5015385..5016173) Variovorax paradoxus S110 7971731 YP_002946593.1 CDS Vapar_4722 NC_012791.1 5016520 5018148 R PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase; methylcrotonoyl-CoA carboxylase complement(5016520..5018148) Variovorax paradoxus S110 7971732 YP_002946594.1 CDS Vapar_4723 NC_012791.1 5018145 5019827 R PFAM: AMP-dependent synthetase and ligase; KEGG: aav:Aave_4355 acyl-CoA synthetase; AMP-binding domain-containing protein complement(5018145..5019827) Variovorax paradoxus S110 7971733 YP_002946595.1 CDS Vapar_4724 NC_012791.1 5019971 5021143 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: lch:Lcho_2119 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein complement(5019971..5021143) Variovorax paradoxus S110 7971734 YP_002946596.1 CDS Vapar_4725 NC_012791.1 5021287 5022315 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: eba:ebA4655 transcriptional regulatory protein; AraC family transcriptional regulator 5021287..5022315 Variovorax paradoxus S110 7971735 YP_002946597.1 CDS Vapar_4726 NC_012791.1 5022634 5022960 R PFAM: Thioredoxin domain; KEGG: reu:Reut_B4067 thioredoxin; thioredoxin complement(5022634..5022960) Variovorax paradoxus S110 7971736 YP_002946598.1 CDS Vapar_4727 NC_012791.1 5023060 5023752 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD family hydrolase; HAD superfamily hydrolase complement(5023060..5023752) Variovorax paradoxus S110 7971737 YP_002946599.1 CDS Vapar_4728 NC_012791.1 5023807 5025693 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(5023807..5025693) Variovorax paradoxus S110 7971738 YP_002946600.1 CDS Vapar_4729 NC_012791.1 5025915 5026343 R KEGG: pol:Bpro_4182 hypothetical protein; hypothetical protein complement(5025915..5026343) Variovorax paradoxus S110 7971739 YP_002946601.1 CDS Vapar_4730 NC_012791.1 5026430 5027560 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: pna:Pnap_0459 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein complement(5026430..5027560) Variovorax paradoxus S110 7971740 YP_002946602.1 CDS Vapar_4731 NC_012791.1 5027588 5028838 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bbt:BBta_1203 glutamate carboxypeptidase; peptidase M20 complement(5027588..5028838) Variovorax paradoxus S110 7971741 YP_002946603.1 CDS Vapar_4732 NC_012791.1 5028927 5030111 R KEGG: aav:Aave_4368 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase; acetyl-CoA acetyltransferase complement(5028927..5030111) Variovorax paradoxus S110 7971742 YP_002946604.1 CDS aceK NC_012791.1 5030174 5031994 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein complement(5030174..5031994) Variovorax paradoxus S110 7971743 YP_002946605.1 CDS Vapar_4734 NC_012791.1 5031999 5032766 R PFAM: carbonic anhydrase; KEGG: pol:Bpro_4189 carbonate dehydratase; carbonate dehydratase complement(5031999..5032766) Variovorax paradoxus S110 7971744 YP_002946606.1 CDS Vapar_4735 NC_012791.1 5032808 5033206 R PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: pna:Pnap_0453 MerR family transcriptional regulator; MerR family transcriptional regulator complement(5032808..5033206) Variovorax paradoxus S110 7971745 YP_002946607.1 CDS Vapar_4736 NC_012791.1 5033327 5034406 D PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_3844 beta-lactamase-like; cyclic nucleotide-binding protein 5033327..5034406 Variovorax paradoxus S110 7971746 YP_002946608.1 CDS Vapar_4737 NC_012791.1 5034416 5035726 D PFAM: tyrosine protein kinase; leucine-rich repeat protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; leucine-rich repeat-containing protein typical subtype; KEGG: bam:Bamb_4410 serine/threonine protein kinase; serine/threonine protein kinase 5034416..5035726 Variovorax paradoxus S110 7971747 YP_002946609.1 CDS Vapar_4738 NC_012791.1 5035723 5036634 D PFAM: pseudouridine synthase; KEGG: pol:Bpro_2906 pseudouridine synthase; pseudouridine synthase 5035723..5036634 Variovorax paradoxus S110 7971748 YP_002946610.1 CDS Vapar_4739 NC_012791.1 5036702 5037472 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cak:Caul_3063 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 5036702..5037472 Variovorax paradoxus S110 7971749 YP_002946611.1 CDS Vapar_4740 NC_012791.1 5038066 5039022 R PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_4199 protein of unknown function DUF45; hypothetical protein complement(5038066..5039022) Variovorax paradoxus S110 7971750 YP_002946612.1 CDS Vapar_4741 NC_012791.1 5039070 5039846 R PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_4200 1-acyl-sn-glycerol-3-phosphate acyltransferase; phospholipid/glycerol acyltransferase complement(5039070..5039846) Variovorax paradoxus S110 7971751 YP_002946613.1 CDS Vapar_4742 NC_012791.1 5039846 5040439 R TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pol:Bpro_4201 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein complement(5039846..5040439) Variovorax paradoxus S110 7971752 YP_002946614.1 CDS Vapar_4743 NC_012791.1 5040462 5042600 R KEGG: pna:Pnap_0444 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, subunit beta; glycyl-tRNA synthetase subunit beta complement(5040462..5042600) Variovorax paradoxus S110 7971753 YP_002946615.1 CDS glyQ NC_012791.1 5042604 5043509 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(5042604..5043509) Variovorax paradoxus S110 7971754 YP_002946616.1 CDS Vapar_4745 NC_012791.1 5043758 5044723 D PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: mpt:Mpe_A2183 hypothetical protein; diacylglycerol kinase 5043758..5044723 Variovorax paradoxus S110 7971755 YP_002946617.1 CDS Vapar_4746 NC_012791.1 5044720 5045544 D PFAM: metallophosphoesterase; KEGG: mpt:Mpe_A1721 DNA repair exonuclease; metallophosphoesterase 5044720..5045544 Variovorax paradoxus S110 7971756 YP_002946618.1 CDS Vapar_4747 NC_012791.1 5045555 5046376 D PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: pna:Pnap_3543 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 5045555..5046376 Variovorax paradoxus S110 7971757 YP_002946619.1 CDS Vapar_4748 NC_012791.1 5046492 5047562 R KEGG: pol:Bpro_4206 L-asparaginases, type II; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; L-asparaginase, type II complement(5046492..5047562) Variovorax paradoxus S110 7971758 YP_002946620.1 CDS Vapar_4749 NC_012791.1 5047714 5048397 D PFAM: Tetracycline transcriptional regulator YcdC domain protein; regulatory protein TetR; KEGG: oan:Oant_3875 transcriptional regulator, TetR family; TetR family transcriptional regulator 5047714..5048397 Variovorax paradoxus S110 7971759 YP_002946621.1 CDS Vapar_4750 NC_012791.1 5048411 5049130 R PFAM: carbonic anhydrase; KEGG: bbt:BBta_6172 carbonic anhydrase; carbonic anhydrase complement(5048411..5049130) Variovorax paradoxus S110 7971760 YP_002946622.1 CDS Vapar_4751 NC_012791.1 5049253 5050110 D KEGG: bbt:BBta_6173 hypothetical protein; hypothetical protein 5049253..5050110 Variovorax paradoxus S110 7971761 YP_002946623.1 CDS Vapar_4752 NC_012791.1 5050129 5051073 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: scl:sce8950 LysR family transcriptional regulator; LysR family transcriptional regulator complement(5050129..5051073) Variovorax paradoxus S110 7971762 YP_002946624.1 CDS Vapar_4753 NC_012791.1 5051184 5052407 D PFAM: major facilitator superfamily MFS_1; KEGG: scl:sce8951 major facilitator superfamily permease; major facilitator superfamily protein 5051184..5052407 Variovorax paradoxus S110 7971763 YP_002946625.1 CDS Vapar_4754 NC_012791.1 5052415 5052702 R hypothetical protein complement(5052415..5052702) Variovorax paradoxus S110 7971764 YP_002946626.1 CDS Vapar_4755 NC_012791.1 5052871 5053458 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bbt:BBta_1267 NAD(P)H dehydrogenase (quinone) protein; NAD(P)H dehydrogenase (quinone) 5052871..5053458 Variovorax paradoxus S110 7971765 YP_002946627.1 CDS Vapar_4756 NC_012791.1 5053455 5054792 D PFAM: amidohydrolase; KEGG: kpn:KPN_02036 cytosine deaminase; amidohydrolase 5053455..5054792 Variovorax paradoxus S110 7971766 YP_002946628.1 CDS Vapar_4757 NC_012791.1 5054747 5055610 D PFAM: Creatininase; KEGG: kpe:KPK_2295 creatininase; Creatininase 5054747..5055610 Variovorax paradoxus S110 7971767 YP_002946629.1 CDS Vapar_4758 NC_012791.1 5055684 5056670 D PFAM: NMT1/THI5 like domain protein; KEGG: bxe:Bxe_A2012 nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein; NMT1/THI5 like domain-containing protein 5055684..5056670 Variovorax paradoxus S110 7971768 YP_002946630.1 CDS Vapar_4759 NC_012791.1 5056682 5057512 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: kpe:KPK_2293 ABC transporter ATP-binding protein; ABC transporter 5056682..5057512 Variovorax paradoxus S110 7971769 YP_002946631.1 CDS Vapar_4760 NC_012791.1 5057509 5058312 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A2015 nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein; binding-protein-dependent transport systems inner membrane component 5057509..5058312 Variovorax paradoxus S110 7971770 YP_002946632.1 CDS Vapar_4761 NC_012791.1 5058322 5059695 D PFAM: FAD linked oxidase; KEGG: kpe:KPK_2291 FAD-binding protein; FAD linked oxidase 5058322..5059695 Variovorax paradoxus S110 7971771 YP_002946633.1 CDS Vapar_4762 NC_012791.1 5059718 5061307 R TIGRFAM: apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ajs:Ajs_0524 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase complement(5059718..5061307) Variovorax paradoxus S110 7971772 YP_002946634.1 CDS Vapar_4763 NC_012791.1 5061307 5062185 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: pol:Bpro_4209 CBS domain; CBS domain containing protein complement(5061307..5062185) Variovorax paradoxus S110 7971773 YP_002946635.1 CDS Vapar_4764 NC_012791.1 5062275 5063003 R PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferaser complement(5062275..5063003) Variovorax paradoxus S110 7971774 YP_002946636.1 CDS Vapar_4765 NC_012791.1 5063113 5063586 R PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: pol:Bpro_4212 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(5063113..5063586) Variovorax paradoxus S110 7971775 YP_002946637.1 CDS Vapar_4766 NC_012791.1 5063741 5064868 D KEGG: aav:Aave_4191 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 5063741..5064868 Variovorax paradoxus S110 7971776 YP_002946638.1 CDS Vapar_4767 NC_012791.1 5064897 5065697 D KEGG: pol:Bpro_4214 cyclohexadienyl dehydratase; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; prephenate dehydratase 5064897..5065697 Variovorax paradoxus S110 7971777 YP_002946639.1 CDS phhA NC_012791.1 5065715 5066593 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 5065715..5066593 Variovorax paradoxus S110 7971778 YP_002946640.1 CDS Vapar_4769 NC_012791.1 5066737 5068428 D PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4225 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 5066737..5068428 Variovorax paradoxus S110 7971779 YP_002946641.1 CDS Vapar_4770 NC_012791.1 5068429 5069358 D PFAM: beta-lactamase domain protein; KEGG: ajs:Ajs_0515 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein 5068429..5069358 Variovorax paradoxus S110 7971780 YP_002946642.1 CDS Vapar_4771 NC_012791.1 5081056 5082963 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dia:Dtpsy_3059 ABC transporter; ABC transporter 5081056..5082963 Variovorax paradoxus S110 7970241 YP_002946643.1 CDS Vapar_4772 NC_012791.1 5083057 5084808 D PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: aav:Aave_1256 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 5083057..5084808 Variovorax paradoxus S110 7970242 YP_002946644.1 CDS Vapar_4773 NC_012791.1 5084819 5085727 R PFAM: protein of unknown function DUF461; nuclear export factor GLE1; KEGG: smd:Smed_1186 protein of unknown function DUF461; hypothetical protein complement(5084819..5085727) Variovorax paradoxus S110 7970243 YP_002946645.1 CDS Vapar_4774 NC_012791.1 5085763 5088045 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: har:HEAR0058 TonB-dependent receptor protein; TonB-dependent receptor complement(5085763..5088045) Variovorax paradoxus S110 7970244 YP_002946646.1 CDS Vapar_4775 NC_012791.1 5088162 5088533 R KEGG: vei:Veis_4741 hypothetical protein; hypothetical protein complement(5088162..5088533) Variovorax paradoxus S110 7970245 YP_002946647.1 CDS Vapar_4776 NC_012791.1 5088545 5089750 R PFAM: GumN family protein; KEGG: rpi:Rpic_4133 GumN family protein; GumN family protein complement(5088545..5089750) Variovorax paradoxus S110 7970246 YP_002946648.1 CDS Vapar_4777 NC_012791.1 5089814 5090227 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_0448 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 5089814..5090227 Variovorax paradoxus S110 7970247 YP_002946649.1 CDS Vapar_4778 NC_012791.1 5090224 5091438 D KEGG: sbn:Sbal195_2514 hypothetical protein; hypothetical protein 5090224..5091438 Variovorax paradoxus S110 7970248 YP_002946650.1 CDS Vapar_4779 NC_012791.1 5091470 5092444 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_1128 hypothetical protein; hypothetical protein complement(5091470..5092444) Variovorax paradoxus S110 7970249 YP_002946651.1 CDS Vapar_4780 NC_012791.1 5092448 5092678 R KEGG: bcj:BCAL2997 hypothetical protein; hypothetical protein complement(5092448..5092678) Variovorax paradoxus S110 7970250 YP_002946652.1 CDS Vapar_4781 NC_012791.1 5092675 5094393 R PFAM: monooxygenase FAD-binding; KEGG: vei:Veis_4632 monooxygenase, FAD-binding; FAD-binding monooxygenase complement(5092675..5094393) Variovorax paradoxus S110 7970251 YP_002946653.1 CDS Vapar_4782 NC_012791.1 5094552 5095331 D PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: vei:Veis_4633 response regulator receiver protein; LuxR family transcriptional regulator 5094552..5095331 Variovorax paradoxus S110 7970252 YP_002946654.1 CDS Vapar_4783 NC_012791.1 5095332 5096402 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: aav:Aave_0742 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(5095332..5096402) Variovorax paradoxus S110 7970253 YP_002946655.1 CDS Vapar_4784 NC_012791.1 5096537 5097772 D KEGG: pol:Bpro_0444 hypothetical protein; hypothetical protein 5096537..5097772 Variovorax paradoxus S110 7970254 YP_002946656.1 CDS Vapar_4785 NC_012791.1 5097890 5098168 D KEGG: dia:Dtpsy_0437 hypothetical protein; hypothetical protein 5097890..5098168 Variovorax paradoxus S110 7970255 YP_002946657.1 CDS Vapar_4786 NC_012791.1 5098246 5099307 R TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase; KEGG: dac:Daci_1117 membrane protein AbrB duplication; hypothetical protein complement(5098246..5099307) Variovorax paradoxus S110 7970256 YP_002946658.1 CDS Vapar_4787 NC_012791.1 5099434 5100204 D PFAM: protein of unknown function DUF399; KEGG: pol:Bpro_0441 hypothetical protein; hypothetical protein 5099434..5100204 Variovorax paradoxus S110 7970257 YP_002946659.1 CDS Vapar_4788 NC_012791.1 5100242 5101576 R PFAM: aminotransferase class-III; KEGG: mpt:Mpe_A1898 beta alanine--pyruvate transaminase; class III aminotransferase complement(5100242..5101576) Variovorax paradoxus S110 7970258 YP_002946660.1 CDS purU NC_012791.1 5101644 5102501 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 5101644..5102501 Variovorax paradoxus S110 7970259 YP_002946661.1 CDS Vapar_4790 NC_012791.1 5102529 5102906 R KEGG: aav:Aave_4502 signal peptide protein; signal peptide protein complement(5102529..5102906) Variovorax paradoxus S110 7970260 YP_002946662.1 CDS Vapar_4791 NC_012791.1 5103039 5104307 R PFAM: lipolytic protein G-D-S-L family; KEGG: cak:Caul_0961 GDSL family lipase; G-D-S-L family lipolytic protein complement(5103039..5104307) Variovorax paradoxus S110 7970261 YP_002946663.1 CDS Vapar_4792 NC_012791.1 5104430 5107726 R PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; carboxyl transferase; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: dac:Daci_1073 carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthase L chain ATP-binding complement(5104430..5107726) Variovorax paradoxus S110 7970262 YP_002946664.1 CDS Vapar_4793 NC_012791.1 5107738 5109351 R PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_3898 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(5107738..5109351) Variovorax paradoxus S110 7970263 YP_002946665.1 CDS Vapar_4794 NC_012791.1 5109438 5110136 D PFAM: regulatory protein TetR; KEGG: rfr:Rfer_3897 TetR family transcriptional regulator; TetR family transcriptional regulator 5109438..5110136 Variovorax paradoxus S110 7970264 YP_002946666.1 CDS Vapar_4795 NC_012791.1 5110167 5111429 D PFAM: extracellular ligand-binding receptor; KEGG: vei:Veis_1685 extracellular ligand-binding receptor; extracellular ligand-binding receptor 5110167..5111429 Variovorax paradoxus S110 7970265 YP_002946667.1 CDS Vapar_4796 NC_012791.1 5111865 5115089 D PFAM: cytochrome P450; FAD-binding domain protein; flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: bja:blr2882 bifunctional P-450:NADPH-P450 reductase; cytochrome P450 5111865..5115089 Variovorax paradoxus S110 7970266 YP_002946668.1 CDS Vapar_4797 NC_012791.1 5115106 5115879 R KEGG: bja:blr2889 hypothetical protein; hypothetical protein complement(5115106..5115879) Variovorax paradoxus S110 7970267 YP_002946669.1 CDS Vapar_4798 NC_012791.1 5115966 5116601 R PFAM: regulatory protein TetR; KEGG: pna:Pnap_3496 TetR family transcriptional regulator; TetR family transcriptional regulator complement(5115966..5116601) Variovorax paradoxus S110 7970268 YP_002946670.1 CDS Vapar_4799 NC_012791.1 5116649 5117182 R KEGG: dia:Dtpsy_0552 poly(hydroxyalkanoate) granule-associated protein; hypothetical protein complement(5116649..5117182) Variovorax paradoxus S110 7970269 YP_002946671.1 CDS Vapar_4800 NC_012791.1 5117200 5117757 R KEGG: atc:AGR_C_2490 hypothetical protein; hypothetical protein complement(5117200..5117757) Variovorax paradoxus S110 7970270 YP_002946672.1 CDS Vapar_4801 NC_012791.1 5117894 5119576 R TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089; KEGG: pol:Bpro_2303 diacylglycerol O-acyltransferase; acyltransferase, WS/DGAT/MGAT complement(5117894..5119576) Variovorax paradoxus S110 7970271 YP_002946673.1 CDS Vapar_4802 NC_012791.1 5119730 5121823 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: xcc:XCC3506 prolyl oligopeptidase; prolyl oligopeptidase 5119730..5121823 Variovorax paradoxus S110 7970272 YP_002946674.1 CDS Vapar_4803 NC_012791.1 5121820 5122743 D TIGRFAM: arginase; PFAM: arginase/agmatinase/formiminoglutamase; KEGG: dia:Dtpsy_0241 arginase; arginase 5121820..5122743 Variovorax paradoxus S110 7970273 YP_002946675.1 CDS Vapar_4804 NC_012791.1 5122749 5123807 R KEGG: mno:Mnod_4389 hypothetical protein; hypothetical protein complement(5122749..5123807) Variovorax paradoxus S110 7970274 YP_002946676.1 CDS Vapar_4805 NC_012791.1 5123804 5124295 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rpc:RPC_4713 MarR family transcriptional regulator; MarR family transcriptional regulator complement(5123804..5124295) Variovorax paradoxus S110 7970275 YP_002946677.1 CDS Vapar_4806 NC_012791.1 5124346 5125038 R KEGG: aav:Aave_2153 hypothetical protein; hypothetical protein complement(5124346..5125038) Variovorax paradoxus S110 7970276 YP_002946678.1 CDS Vapar_4807 NC_012791.1 5125122 5125775 R KEGG: lch:Lcho_1238 fructose transport system kinase; fructose transport system kinase complement(5125122..5125775) Variovorax paradoxus S110 7970277 YP_002946679.1 CDS Vapar_4808 NC_012791.1 5125807 5127078 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: lch:Lcho_1626 Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase complement(5125807..5127078) Variovorax paradoxus S110 7970278 YP_002946680.1 CDS Vapar_4809 NC_012791.1 5127280 5127741 D KEGG: net:Neut_0038 hypothetical protein; hypothetical protein 5127280..5127741 Variovorax paradoxus S110 7970279 YP_002946681.1 CDS Vapar_4810 NC_012791.1 5127757 5130735 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(5127757..5130735) Variovorax paradoxus S110 7970280 YP_002946682.1 CDS Vapar_4811 NC_012791.1 5130824 5131297 D PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: pol:Bpro_0399 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 5130824..5131297 Variovorax paradoxus S110 7970281 YP_002946683.1 CDS Vapar_4812 NC_012791.1 5131304 5132002 R PFAM: alanine racemase domain protein; KEGG: aav:Aave_0638 alanine racemase domain-containing protein; alanine racemase domain-containing protein complement(5131304..5132002) Variovorax paradoxus S110 7970282 YP_002946684.1 CDS Vapar_4813 NC_012791.1 5132054 5133097 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dia:Dtpsy_0412 twitching motility protein; twitching motility protein 5132054..5133097 Variovorax paradoxus S110 7970283 YP_002946685.1 CDS Vapar_4814 NC_012791.1 5133126 5134262 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0395 twitching motility protein; twitching motility protein 5133126..5134262 Variovorax paradoxus S110 7970284 YP_002946686.1 CDS Vapar_4815 NC_012791.1 5134306 5135214 D PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; KEGG: dia:Dtpsy_0409 3-hydroxyisobutyrate dehydrogenase; 2-hydroxy-3-oxopropionate reductase 5134306..5135214 Variovorax paradoxus S110 7970285 YP_002946687.1 CDS Vapar_4816 NC_012791.1 5135260 5136036 R PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: ajs:Ajs_0416 transport-associated; transport-associated complement(5135260..5136036) Variovorax paradoxus S110 7970286 YP_002946688.1 CDS Vapar_4817 NC_012791.1 5136033 5136677 R KEGG: rfr:Rfer_3874 phosphoheptose isomerase; phosphoheptose isomerase complement(5136033..5136677) Variovorax paradoxus S110 7970287 YP_002946689.1 CDS Vapar_4818 NC_012791.1 5136765 5137136 R PFAM: protein of unknown function UPF0102; KEGG: vei:Veis_0630 hypothetical protein; hypothetical protein complement(5136765..5137136) Variovorax paradoxus S110 7970288 YP_002946690.1 CDS Vapar_4819 NC_012791.1 5137182 5138138 D PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dac:Daci_1061 uroporphyrin-III C/tetrapyrrole methyltransferase; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 5137182..5138138 Variovorax paradoxus S110 7970289 YP_002946691.1 CDS Vapar_4820 NC_012791.1 5138148 5138987 R PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: dac:Daci_0796 IclR family transcriptional regulator; IclR family transcriptional regulator complement(5138148..5138987) Variovorax paradoxus S110 7970290 YP_002946692.1 CDS Vapar_4821 NC_012791.1 5139088 5140080 D PFAM: conserved hypothetical protein; KEGG: dac:Daci_0797 hypothetical protein; hypothetical protein 5139088..5140080 Variovorax paradoxus S110 7970291 YP_002946693.1 CDS Vapar_4822 NC_012791.1 5140118 5141632 D PFAM: AMP-dependent synthetase and ligase; KEGG: dac:Daci_0798 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 5140118..5141632 Variovorax paradoxus S110 7970292 YP_002946694.1 CDS Vapar_4823 NC_012791.1 5141650 5142435 D KEGG: dac:Daci_0799 citrate synthase; citrate synthase 5141650..5142435 Variovorax paradoxus S110 7970293 YP_002946695.1 CDS Vapar_4824 NC_012791.1 5142432 5143253 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rme:Rmet_5379 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 5142432..5143253 Variovorax paradoxus S110 7970294 YP_002946696.1 CDS Vapar_4825 NC_012791.1 5143284 5144015 R KEGG: mch:Mchl_4422 glutathione S-transferase-like protein; glutathione S-transferase-like protein complement(5143284..5144015) Variovorax paradoxus S110 7970295 YP_002946697.1 CDS Vapar_4826 NC_012791.1 5144068 5144700 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bam:Bamb_0105 (acyl-carrier-protein) phosphodiesterase; NAD(P)H dehydrogenase (quinone) complement(5144068..5144700) Variovorax paradoxus S110 7970296 YP_002946698.1 CDS Vapar_4827 NC_012791.1 5144805 5145707 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bam:Bamb_0106 LysR family transcriptional regulator; LysR family transcriptional regulator 5144805..5145707 Variovorax paradoxus S110 7970297 YP_002946699.1 CDS Vapar_4828 NC_012791.1 5145930 5146451 R PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: azc:AZC_1503 transcriptional regulator; XRE family transcriptional regulator complement(5145930..5146451) Variovorax paradoxus S110 7970298 YP_002946700.1 CDS Vapar_4830 NC_012791.1 5147895 5148575 R PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: pol:Bpro_2034 TetR family transcriptional regulator; TetR family transcriptional regulator complement(5147895..5148575) Variovorax paradoxus S110 7970301 YP_002946701.1 CDS Vapar_4831 NC_012791.1 5148752 5150026 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pna:Pnap_2887 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 5148752..5150026 Variovorax paradoxus S110 7970302 YP_002946702.1 CDS Vapar_4832 NC_012791.1 5150043 5153207 D TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2036 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 5150043..5153207 Variovorax paradoxus S110 7970303 YP_002946703.1 CDS Vapar_4833 NC_012791.1 5153200 5154624 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_0321 RND efflux system outer membrane lipoprotein; NodT family RND efflux system outer membrane lipoprotein 5153200..5154624 Variovorax paradoxus S110 7970304 YP_002946704.1 CDS Vapar_4834 NC_012791.1 5154740 5155348 D PFAM: cytochrome C class I; KEGG: pna:Pnap_0263 cytochrome C, class I; cytochrome C class I 5154740..5155348 Variovorax paradoxus S110 7970305 YP_002946705.1 CDS Vapar_4835 NC_012791.1 5155417 5155968 R KEGG: pna:Pnap_0262 hypothetical protein; hypothetical protein complement(5155417..5155968) Variovorax paradoxus S110 7970306 YP_002946706.1 CDS Vapar_4836 NC_012791.1 5155974 5157032 R KEGG: aav:Aave_0383 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(5155974..5157032) Variovorax paradoxus S110 7970307 YP_002946707.1 CDS Vapar_4837 NC_012791.1 5157037 5157489 R KEGG: pol:Bpro_0333 hypothetical protein; hypothetical protein complement(5157037..5157489) Variovorax paradoxus S110 7970308 YP_002946708.1 CDS Vapar_4838 NC_012791.1 5157708 5158820 D PFAM: Luciferase-like monooxygenase; KEGG: ara:Arad_7073 monooxygenase protein; Luciferase-like monooxygenase 5157708..5158820 Variovorax paradoxus S110 7970309 YP_002946709.1 CDS Vapar_4839 NC_012791.1 5158834 5159592 D PFAM: isochorismatase hydrolase; KEGG: psa:PST_3598 isochorismatase family protein; isochorismatase hydrolase 5158834..5159592 Variovorax paradoxus S110 7970310 YP_002946710.1 CDS Vapar_4840 NC_012791.1 5159626 5160018 D PFAM: endoribonuclease L-PSP; KEGG: psp:PSPPH_1046 endoribonuclease L-PSP family protein; endoribonuclease L-PSP 5159626..5160018 Variovorax paradoxus S110 7970311 YP_002946711.1 CDS Vapar_4841 NC_012791.1 5160021 5160821 D PFAM: alpha/beta hydrolase fold; KEGG: psa:PST_3600 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein 5160021..5160821 Variovorax paradoxus S110 7970312 YP_002946712.1 CDS Vapar_4842 NC_012791.1 5160818 5161417 D PFAM: nitroreductase; KEGG: atc:AGR_C_4536 enzyme; hypothetical protein 5160818..5161417 Variovorax paradoxus S110 7971536 YP_002946713.1 CDS Vapar_4843 NC_012791.1 5161449 5161991 D PFAM: flavin reductase domain protein FMN-binding; KEGG: esa:ESA_02367 hypothetical protein; flavin reductase FMN-binding protein 5161449..5161991 Variovorax paradoxus S110 7971537 YP_002946714.1 CDS Vapar_4844 NC_012791.1 5162152 5162910 R PFAM: Tetracycline transcriptional regulator YcdC domain protein; regulatory protein TetR; KEGG: psa:PST_3596 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(5162152..5162910) Variovorax paradoxus S110 7971538 YP_002946715.1 CDS Vapar_4845 NC_012791.1 5163113 5164117 D PFAM: 2OG-Fe(II) oxygenase; KEGG: psa:PST_3584 oxidoreductase, 2OG-Fe(II) oxygenase family; 2OG-Fe(II) oxygenase 5163113..5164117 Variovorax paradoxus S110 7971539 YP_002946716.1 CDS Vapar_4846 NC_012791.1 5164474 5164860 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pst:PSPTO_2979 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 5164474..5164860 Variovorax paradoxus S110 7971540 YP_002946717.1 CDS Vapar_4847 NC_012791.1 5164928 5166043 D PFAM: basic membrane lipoprotein; KEGG: bpy:Bphyt_4236 basic membrane lipoprotein; basic membrane lipoprotein 5164928..5166043 Variovorax paradoxus S110 7971541 YP_002946718.1 CDS Vapar_4848 NC_012791.1 5166069 5167601 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: psb:Psyr_1002 ABC transporter; ABC transporter 5166069..5167601 Variovorax paradoxus S110 7971542 YP_002946719.1 CDS Vapar_4849 NC_012791.1 5167594 5168745 D PFAM: inner-membrane translocator; KEGG: psb:Psyr_1003 inner-membrane translocator; inner-membrane translocator 5167594..5168745 Variovorax paradoxus S110 7971543 YP_002946720.1 CDS Vapar_4850 NC_012791.1 5168742 5169674 D PFAM: inner-membrane translocator; KEGG: psa:PST_3579 probable permease of ABC transporter; inner-membrane translocator 5168742..5169674 Variovorax paradoxus S110 7971544 YP_002946721.1 CDS Vapar_4851 NC_012791.1 5169671 5170345 D PFAM: isochorismatase hydrolase; KEGG: mpo:Mpop_4344 isochorismatase hydrolase; isochorismatase hydrolase 5169671..5170345 Variovorax paradoxus S110 7971545 YP_002946722.1 CDS Vapar_4852 NC_012791.1 5170353 5171114 R KEGG: pol:Bpro_0332 hypothetical protein; hypothetical protein complement(5170353..5171114) Variovorax paradoxus S110 7971546 YP_002946723.1 CDS Vapar_4853 NC_012791.1 5171162 5171764 D PFAM: LemA family protein; KEGG: aav:Aave_0381 LemA family protein; LemA family protein 5171162..5171764 Variovorax paradoxus S110 7971547 YP_002946724.1 CDS Vapar_4854 NC_012791.1 5171781 5172725 D PFAM: protein of unknown function DUF477; KEGG: dia:Dtpsy_0310 protein of unknown function DUF477; hypothetical protein 5171781..5172725 Variovorax paradoxus S110 7971548 YP_002946725.1 CDS Vapar_4855 NC_012791.1 5172728 5173252 D PFAM: protein of unknown function DUF477; KEGG: dia:Dtpsy_0309 protein of unknown function DUF477; hypothetical protein 5172728..5173252 Variovorax paradoxus S110 7971549 YP_002946726.1 CDS Vapar_4856 NC_012791.1 5173369 5174052 R PFAM: metallophosphoesterase; KEGG: aav:Aave_0377 metallophosphoesterase; metallophosphoesterase complement(5173369..5174052) Variovorax paradoxus S110 7971550 YP_002946727.1 CDS Vapar_4857 NC_012791.1 5174129 5174578 D TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain; KEGG: pna:Pnap_1332 thioredoxin; thioredoxin 5174129..5174578 Variovorax paradoxus S110 7971551 YP_002946728.1 CDS Vapar_4858 NC_012791.1 5174594 5177452 R PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dac:Daci_3045 DEAD/DEAH box helicase domain-containing protein; DEAD/H associated domain-containing protein complement(5174594..5177452) Variovorax paradoxus S110 7971552 YP_002946729.1 CDS Vapar_4859 NC_012791.1 5177539 5179194 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase complement(5177539..5179194) Variovorax paradoxus S110 7971553 YP_002946730.1 CDS Vapar_4860 NC_012791.1 5179191 5180318 R KEGG: aav:Aave_0374 mRNA 3-end processing factor; mRNA 3-end processing factor complement(5179191..5180318) Variovorax paradoxus S110 7971554 YP_002946731.1 CDS Vapar_4861 NC_012791.1 5180391 5180915 R KEGG: rpa:RPA4383 hypothetical protein; hypothetical protein complement(5180391..5180915) Variovorax paradoxus S110 7971555 YP_002946732.1 CDS Vapar_4862 NC_012791.1 5180987 5181694 R PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: mpt:Mpe_A2021 hypothetical protein; PA-phosphatase-like phosphoesterase complement(5180987..5181694) Variovorax paradoxus S110 7971556 YP_002946733.1 CDS Vapar_4863 NC_012791.1 5181744 5182907 R PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: vei:Veis_3267 oxidoreductase domain-containing protein; oxidoreductase domain-containing protein complement(5181744..5182907) Variovorax paradoxus S110 7971557 YP_002946734.1 CDS Vapar_4864 NC_012791.1 5183059 5184024 R KEGG: bph:Bphy_2242 ABC sugar transporter periplasmic ligand binding protein; ABC sugar transporter periplasmic ligand binding protein complement(5183059..5184024) Variovorax paradoxus S110 7971558 YP_002946735.1 CDS Vapar_4865 NC_012791.1 5184083 5185084 R PFAM: inner-membrane translocator; KEGG: vei:Veis_3273 inner-membrane translocator; inner-membrane translocator complement(5184083..5185084) Variovorax paradoxus S110 7971559 YP_002946736.1 CDS Vapar_4866 NC_012791.1 5185071 5186612 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bxe:Bxe_A3675 ABC sugar transporter ATPase; ABC transporter complement(5185071..5186612) Variovorax paradoxus S110 7971560 YP_002946737.1 CDS Vapar_4867 NC_012791.1 5186609 5187778 R PFAM: ROK family protein; KEGG: vei:Veis_3275 ROK family protein; ROK family protein complement(5186609..5187778) Variovorax paradoxus S110 7971561 YP_002946738.1 CDS atpC NC_012791.1 5188016 5188435 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(5188016..5188435) Variovorax paradoxus S110 7971562 YP_002946739.1 CDS Vapar_4869 NC_012791.1 5188448 5189848 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(5188448..5189848) Variovorax paradoxus S110 7971563 YP_002946740.1 CDS Vapar_4870 NC_012791.1 5189976 5190365 R KEGG: dac:Daci_5091 hypothetical protein; hypothetical protein complement(5189976..5190365) Variovorax paradoxus S110 7971564 YP_002946741.1 CDS Vapar_4871 NC_012791.1 5190453 5191328 R TIGRFAM: ATP synthase F1 subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma; KEGG: vei:Veis_0479 ATP synthase F1 subunit gamma; ATP synthase F1 subunit gamma complement(5190453..5191328) Variovorax paradoxus S110 7971565 YP_002946742.1 CDS Vapar_4872 NC_012791.1 5191350 5192903 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(5191350..5192903) Variovorax paradoxus S110 7971566 YP_002946743.1 CDS Vapar_4873 NC_012791.1 5192952 5193482 R TIGRFAM: ATP synthase F1 subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: rfr:Rfer_0109 F0F1 ATP synthase subunit delta; ATP synthase F1 subunit delta complement(5192952..5193482) Variovorax paradoxus S110 7971567 YP_002946744.1 CDS Vapar_4874 NC_012791.1 5193491 5193961 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(5193491..5193961) Variovorax paradoxus S110 7971568 YP_002946745.1 CDS Vapar_4875 NC_012791.1 5194039 5194302 R TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: mpt:Mpe_A0192 F0F1 ATP synthase subunit C; ATP synthase F0 C subunit complement(5194039..5194302) Variovorax paradoxus S110 7971569 YP_002946746.1 CDS Vapar_4876 NC_012791.1 5194358 5195227 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(5194358..5195227) Variovorax paradoxus S110 7971570 YP_002946747.1 CDS Vapar_4877 NC_012791.1 5195232 5195717 R KEGG: pol:Bpro_0320 ATP synthase protein I; ATP synthase protein I complement(5195232..5195717) Variovorax paradoxus S110 7971571 YP_002946748.1 CDS Vapar_4878 NC_012791.1 5195875 5196768 D PFAM: aminotransferase class IV; KEGG: pna:Pnap_0246 aminotransferase, class IV; class IV aminotransferase 5195875..5196768 Variovorax paradoxus S110 7971572 YP_002946749.1 CDS Vapar_4879 NC_012791.1 5196765 5197079 D PFAM: protein of unknown function DUF493; KEGG: aav:Aave_0364 hypothetical protein; hypothetical protein 5196765..5197079 Variovorax paradoxus S110 7971573 YP_002946750.1 CDS Vapar_4880 NC_012791.1 5197099 5197779 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 5197099..5197779 Variovorax paradoxus S110 7971574 YP_002946751.1 CDS Vapar_4881 NC_012791.1 5197787 5198770 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 5197787..5198770 Variovorax paradoxus S110 7971575 YP_002946752.1 CDS Vapar_4882 NC_012791.1 5198791 5200359 R PFAM: major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_4077 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(5198791..5200359) Variovorax paradoxus S110 7971576 YP_002946753.1 CDS Vapar_4883 NC_012791.1 5200472 5201377 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: spe:Spro_2354 LysR family transcriptional regulator; LysR family transcriptional regulator 5200472..5201377 Variovorax paradoxus S110 7971577 YP_002946754.1 CDS Vapar_4884 NC_012791.1 5201489 5203021 D PFAM: AMP-dependent synthetase and ligase; KEGG: dac:Daci_1405 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 5201489..5203021 Variovorax paradoxus S110 7971578 YP_002946755.1 CDS Vapar_4885 NC_012791.1 5203002 5204138 D PFAM: citrate transporter; KEGG: rso:RS01905 hypothetical protein; citrate transporter 5203002..5204138 Variovorax paradoxus S110 7971579 YP_002946756.1 CDS Vapar_4886 NC_012791.1 5204176 5204889 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pol:Bpro_0312 AraC family transcriptional regulator; AraC family transcriptional regulator 5204176..5204889 Variovorax paradoxus S110 7971580 YP_002946757.1 CDS Vapar_4887 NC_012791.1 5204961 5205812 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_0311 protein of unknown function DUF6, transmembrane; hypothetical protein 5204961..5205812 Variovorax paradoxus S110 7971581 YP_002946758.1 CDS Vapar_4888 NC_012791.1 5205886 5206209 D hypothetical protein 5205886..5206209 Variovorax paradoxus S110 7971582 YP_002946759.1 CDS Vapar_4889 NC_012791.1 5206288 5207331 R PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: rfr:Rfer_2188 zinc-binding alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein complement(5206288..5207331) Variovorax paradoxus S110 7971583 YP_002946760.1 CDS Vapar_4890 NC_012791.1 5207436 5208833 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pna:Pnap_2739 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(5207436..5208833) Variovorax paradoxus S110 7971584 YP_002946761.1 CDS Vapar_4891 NC_012791.1 5208830 5209579 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pna:Pnap_2740 two component transcriptional regulator; winged helix family two component transcriptional regulator complement(5208830..5209579) Variovorax paradoxus S110 7971585 YP_002946762.1 CDS Vapar_4892 NC_012791.1 5209579 5209986 R KEGG: afw:Anae109_2979 hypothetical protein; hypothetical protein complement(5209579..5209986) Variovorax paradoxus S110 7971586 YP_002946763.1 CDS Vapar_4893 NC_012791.1 5209980 5210480 R KEGG: bbt:BBta_5025 hypothetical protein; hypothetical protein complement(5209980..5210480) Variovorax paradoxus S110 7971587 YP_002946764.1 CDS Vapar_4894 NC_012791.1 5210473 5210940 R KEGG: pna:Pnap_2741 hypothetical protein; hypothetical protein complement(5210473..5210940) Variovorax paradoxus S110 7971588 YP_002946765.1 CDS Vapar_4895 NC_012791.1 5210983 5211354 R hypothetical protein complement(5210983..5211354) Variovorax paradoxus S110 7971589 YP_002946766.1 CDS Vapar_4896 NC_012791.1 5211491 5213287 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: aav:Aave_0354 phosphoenolpyruvate--protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(5211491..5213287) Variovorax paradoxus S110 7971590 YP_002946767.1 CDS Vapar_4897 NC_012791.1 5213298 5213567 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: dac:Daci_0408 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr complement(5213298..5213567) Variovorax paradoxus S110 7971591 YP_002946768.1 CDS Vapar_4898 NC_012791.1 5213536 5213991 R PFAM: PTS system fructose subfamily IIA component; KEGG: aav:Aave_0352 PTS system fructose subfamily IIA component; PTS system fructose subfamily IIA component complement(5213536..5213991) Variovorax paradoxus S110 7971592 YP_002946769.1 CDS Vapar_4899 NC_012791.1 5213988 5215235 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0296 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(5213988..5215235) Variovorax paradoxus S110 7971593 YP_002946770.1 CDS Vapar_4900 NC_012791.1 5215232 5215774 R KEGG: ajs:Ajs_0293 hypothetical protein; hypothetical protein complement(5215232..5215774) Variovorax paradoxus S110 7971594 YP_002946771.1 CDS Vapar_4901 NC_012791.1 5215864 5216361 D PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: dia:Dtpsy_0287 redoxin domain protein; redoxin 5215864..5216361 Variovorax paradoxus S110 7971595 YP_002946772.1 CDS Vapar_4902 NC_012791.1 5216564 5217151 D PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_0402 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferaser 5216564..5217151 Variovorax paradoxus S110 7971596 YP_002946773.1 CDS Vapar_4903 NC_012791.1 5217164 5217670 R PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: pol:Bpro_0266 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; redoxin complement(5217164..5217670) Variovorax paradoxus S110 7971597 YP_002946774.1 CDS rpsQ NC_012791.1 5217765 5218034 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(5217765..5218034) Variovorax paradoxus S110 7971598 YP_002946775.1 CDS Vapar_4905 NC_012791.1 5218044 5218295 R TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: dac:Daci_0399 ribosomal protein L29; 50S ribosomal protein L29 complement(5218044..5218295) Variovorax paradoxus S110 7971599 YP_002946776.1 CDS rplP NC_012791.1 5218309 5218725 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(5218309..5218725) Variovorax paradoxus S110 7971600 YP_002946777.1 CDS rpsC NC_012791.1 5218754 5219680 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(5218754..5219680) Variovorax paradoxus S110 7971601 YP_002946778.1 CDS rplV NC_012791.1 5219698 5220030 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(5219698..5220030) Variovorax paradoxus S110 7971602 YP_002946779.1 CDS rpsS NC_012791.1 5220040 5220318 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(5220040..5220318) Variovorax paradoxus S110 7971603 YP_002946780.1 CDS rplB NC_012791.1 5220329 5221153 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(5220329..5221153) Variovorax paradoxus S110 7971604 YP_002946781.1 CDS rplW NC_012791.1 5221156 5221491 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(5221156..5221491) Variovorax paradoxus S110 7971605 YP_002946782.1 CDS rplD NC_012791.1 5221488 5222108 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(5221488..5222108) Variovorax paradoxus S110 7971606 YP_002946783.1 CDS rplC NC_012791.1 5222108 5222788 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(5222108..5222788) Variovorax paradoxus S110 7971607 YP_002946784.1 CDS Vapar_4914 NC_012791.1 5223043 5223594 R KEGG: pol:Bpro_2171 hypothetical protein; hypothetical protein complement(5223043..5223594) Variovorax paradoxus S110 7971608 YP_002946785.1 CDS Vapar_4915 NC_012791.1 5223612 5225198 R KEGG: pol:Bpro_2172 hypothetical protein; hypothetical protein complement(5223612..5225198) Variovorax paradoxus S110 7971609 YP_002946786.1 CDS rpsJ NC_012791.1 5225344 5225658 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(5225344..5225658) Variovorax paradoxus S110 7971610 YP_002946787.1 CDS Vapar_4917 NC_012791.1 5225679 5226872 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(5225679..5226872) Variovorax paradoxus S110 7971611 YP_002946788.1 CDS Vapar_4918 NC_012791.1 5227069 5229168 R TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: pol:Bpro_0253 translation elongation factor 2 (EF-2/EF-G); translation elongation factor G complement(5227069..5229168) Variovorax paradoxus S110 7971612 YP_002946789.1 CDS Vapar_4919 NC_012791.1 5229265 5229738 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(5229265..5229738) Variovorax paradoxus S110 7971613 YP_002946790.1 CDS Vapar_4920 NC_012791.1 5229892 5230269 R TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: pol:Bpro_0251 30S ribosomal protein S12; 30S ribosomal protein S12 complement(5229892..5230269) Variovorax paradoxus S110 7971614 YP_002946791.1 CDS Vapar_4921 NC_012791.1 5230460 5231629 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pol:Bpro_0250 Penicillin-binding protein 6. serine peptidase. MEROPS family S11; beta-lactamase complement(5230460..5231629) Variovorax paradoxus S110 7971615 YP_002946792.1 CDS Vapar_4922 NC_012791.1 5231682 5232314 R KEGG: aav:Aave_0331 transmembrane protein; transmembrane protein complement(5231682..5232314) Variovorax paradoxus S110 7971616 YP_002946793.1 CDS Vapar_4923 NC_012791.1 5232387 5232740 R KEGG: dac:Daci_0383 ferredoxin-like protein; ferredoxin-like protein complement(5232387..5232740) Variovorax paradoxus S110 7974205 YP_002946794.1 CDS Vapar_4924 NC_012791.1 5232773 5233888 R PFAM: VanZ family protein; KEGG: rfr:Rfer_3803 VanZ like protein; VanZ family protein complement(5232773..5233888) Variovorax paradoxus S110 7974206 YP_002946795.1 CDS Vapar_4925 NC_012791.1 5233903 5234331 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_0328 hypothetical protein; hypothetical protein complement(5233903..5234331) Variovorax paradoxus S110 7974207 YP_002946796.1 CDS Vapar_4926 NC_012791.1 5234693 5235682 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 5234693..5235682 Variovorax paradoxus S110 7974208 YP_002946797.1 CDS Vapar_4927 NC_012791.1 5235686 5236846 D PFAM: Mg2 transporter protein CorA family protein; KEGG: aav:Aave_0326 Mg2+ transporter protein, CorA family protein; Mg2 transporter protein CorA family protein 5235686..5236846 Variovorax paradoxus S110 7974209 YP_002946798.1 CDS Vapar_4928 NC_012791.1 5236936 5237304 R hypothetical protein complement(5236936..5237304) Variovorax paradoxus S110 7974210 YP_002946799.1 CDS Vapar_4929 NC_012791.1 5237560 5238465 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pfo:Pfl01_4475 LysR family transcriptional regulator; LysR family transcriptional regulator 5237560..5238465 Variovorax paradoxus S110 7974211 YP_002946800.1 CDS Vapar_4930 NC_012791.1 5238489 5239172 R PFAM: dienelactone hydrolase; KEGG: pna:Pnap_0188 carboxymethylenebutenolidase; carboxymethylenebutenolidase complement(5238489..5239172) Variovorax paradoxus S110 7974212 YP_002946801.1 CDS Vapar_4931 NC_012791.1 5239213 5239812 R PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_0240 DsbA oxidoreductase; DSBA oxidoreductase complement(5239213..5239812) Variovorax paradoxus S110 7974213 YP_002946802.1 CDS Vapar_4932 NC_012791.1 5239957 5240703 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_0239 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 5239957..5240703 Variovorax paradoxus S110 7974214 YP_002946803.1 CDS Vapar_4933 NC_012791.1 5240706 5241359 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: pol:Bpro_0238 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 5240706..5241359 Variovorax paradoxus S110 7974215 YP_002946804.1 CDS Vapar_4934 NC_012791.1 5241365 5241826 R PFAM: protein of unknown function DUF55; KEGG: pol:Bpro_2927 protein of unknown function DUF589; hypothetical protein complement(5241365..5241826) Variovorax paradoxus S110 7974216 YP_002946805.1 CDS Vapar_4935 NC_012791.1 5241990 5243159 R PFAM: extracellular ligand-binding receptor; KEGG: rfr:Rfer_3504 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(5241990..5243159) Variovorax paradoxus S110 7974217 YP_002946806.1 CDS Vapar_4936 NC_012791.1 5243192 5245072 R PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_3503 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(5243192..5245072) Variovorax paradoxus S110 7974218 YP_002946807.1 CDS Vapar_4937 NC_012791.1 5245077 5245850 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rfr:Rfer_3502 ABC transporter; ABC transporter complement(5245077..5245850) Variovorax paradoxus S110 7974219 YP_002946808.1 CDS Vapar_4938 NC_012791.1 5246332 5247159 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rfr:Rfer_3501 ABC transporter; ABC transporter complement(5246332..5247159) Variovorax paradoxus S110 7974220 YP_002946809.1 CDS Vapar_4939 NC_012791.1 5247156 5248232 R PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3500 inner-membrane translocator; inner-membrane translocator complement(5247156..5248232) Variovorax paradoxus S110 7974221 YP_002946810.1 CDS Vapar_4940 NC_012791.1 5248327 5249202 R PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3499 inner-membrane translocator; inner-membrane translocator complement(5248327..5249202) Variovorax paradoxus S110 7974222 YP_002946811.1 CDS Vapar_4941 NC_012791.1 5249221 5250051 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rpa:RPA2140 AraC family transcriptional regulator; AraC family transcriptional regulator complement(5249221..5250051) Variovorax paradoxus S110 7974223 YP_002946812.1 CDS Vapar_4942 NC_012791.1 5250172 5251116 R PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: acr:Acry_0942 alpha/beta hydrolase domain-containing protein; alpha/beta hydrolase fold-3 domain-containing protein complement(5250172..5251116) Variovorax paradoxus S110 7974224 YP_002946813.1 CDS purT NC_012791.1 5251180 5252382 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(5251180..5252382) Variovorax paradoxus S110 7974225 YP_002946814.1 CDS Vapar_4944 NC_012791.1 5252562 5253410 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 5252562..5253410 Variovorax paradoxus S110 7974226 YP_002946815.1 CDS Vapar_4945 NC_012791.1 5253445 5254260 D PFAM: enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_1197 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 5253445..5254260 Variovorax paradoxus S110 7974227 YP_002946816.1 CDS Vapar_4946 NC_012791.1 5254271 5255605 D PFAM: beta-lactamase; KEGG: rpe:RPE_4622 6-aminohexanoate-dimer hydrolase; 6-aminohexanoate-dimer hydrolase 5254271..5255605 Variovorax paradoxus S110 7974228 YP_002946817.1 CDS Vapar_4947 NC_012791.1 5255624 5256394 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(5255624..5256394) Variovorax paradoxus S110 7974229 YP_002946818.1 CDS Vapar_4948 NC_012791.1 5256529 5256990 D PFAM: peptidoglycan-binding LysM; transport-associated; SMART: peptidoglycan-binding LysM; KEGG: hypothetical protein; peptidoglycan-binding LysM 5256529..5256990 Variovorax paradoxus S110 7974230 YP_002946819.1 CDS Vapar_4949 NC_012791.1 5257250 5257663 R SMART: rhodanese domainprotein; KEGG: pol:Bpro_4049 rhodanese-like; rhodanese domain-containing protein complement(5257250..5257663) Variovorax paradoxus S110 7974231 YP_002946820.1 CDS Vapar_4950 NC_012791.1 5257885 5258994 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4051 twin-arginine translocation pathway signal; TRAP dicarboxylate transporter subunit DctP 5257885..5258994 Variovorax paradoxus S110 7974232 YP_002946821.1 CDS Vapar_4951 NC_012791.1 5259114 5259782 D PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mms:mma_0126 TRAP-type mannitol/chloroaromatic compound transport system, small permease component; tripartite ATP-independent periplasmic transporter DctQ component 5259114..5259782 Variovorax paradoxus S110 7974233 YP_002946822.1 CDS Vapar_4952 NC_012791.1 5259779 5261698 D PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpe:RPE_0098 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 5259779..5261698 Variovorax paradoxus S110 7974234 YP_002946823.1 CDS Vapar_4953 NC_012791.1 5261748 5263811 R PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: scl:sce5363 hypothetical protein; pyruvate phosphate dikinase PEP/pyruvate-binding complement(5261748..5263811) Variovorax paradoxus S110 7974235 YP_002946824.1 CDS Vapar_4954 NC_012791.1 5263956 5265875 D KEGG: pol:Bpro_4074 chromosome segregation ATPases; chromosome segregation ATPase 5263956..5265875 Variovorax paradoxus S110 7974236 YP_002946825.1 CDS Vapar_4955 NC_012791.1 5265974 5267332 D PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: pol:Bpro_0643 NADPH-glutathione reductase; pyridine nucleotide-disulfide oxidoreductase dimerisation subunit 5265974..5267332 Variovorax paradoxus S110 7974237 YP_002946826.1 CDS Vapar_4956 NC_012791.1 5267329 5268225 R KEGG: pol:Bpro_2929 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 2-dehydropantoate 2-reductase complement(5267329..5268225) Variovorax paradoxus S110 7974238 YP_002946827.1 CDS Vapar_4957 NC_012791.1 5268334 5269851 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 5268334..5269851 Variovorax paradoxus S110 7974239 YP_002946828.1 CDS Vapar_4958 NC_012791.1 5270002 5270961 D PFAM: conserved hypothetical protein; KEGG: dac:Daci_5058 hypothetical protein; hypothetical protein 5270002..5270961 Variovorax paradoxus S110 7974240 YP_002946829.1 CDS Vapar_4959 NC_012791.1 5270971 5271681 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: sus:Acid_4574 ArsR family transcriptional regulator; ArsR family transcriptional regulator complement(5270971..5271681) Variovorax paradoxus S110 7974241 YP_002946830.1 CDS Vapar_4960 NC_012791.1 5271801 5272943 D KEGG: bur:Bcep18194_B0775 cytochrome P450-like; cytochrome P450-like protein 5271801..5272943 Variovorax paradoxus S110 7974242 YP_002946831.1 CDS Vapar_4961 NC_012791.1 5272962 5273933 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pol:Bpro_0646 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(5272962..5273933) Variovorax paradoxus S110 7974243 YP_002946832.1 CDS Vapar_4962 NC_012791.1 5273930 5274589 R PFAM: glutathione S-transferase domain; KEGG: pol:Bpro_0645 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(5273930..5274589) Variovorax paradoxus S110 7974244 YP_002946833.1 CDS Vapar_4963 NC_012791.1 5274713 5275603 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_0644 LysR family transcriptional regulator; LysR family transcriptional regulator 5274713..5275603 Variovorax paradoxus S110 7974245 YP_002946834.1 CDS Vapar_4964 NC_012791.1 5275660 5276643 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rfr:Rfer_3558 ABC transporter; ABC transporter 5275660..5276643 Variovorax paradoxus S110 7974246 YP_002946835.1 CDS Vapar_4965 NC_012791.1 5276656 5277501 D TIGRFAM: ABC transporter NodJ family; PFAM: ABC-2 type transporter; KEGG: rfr:Rfer_3557 ABC transporter; ABC transporter NodJ family 5276656..5277501 Variovorax paradoxus S110 7974247 YP_002946836.1 CDS Vapar_4966 NC_012791.1 5277614 5278075 D PFAM: regulatory protein MarR; transcriptional regulator PadR family protein; SMART: regulatory protein MarR; KEGG: pol:Bpro_0623 MarR family transcriptional regulator; MarR family transcriptional regulator 5277614..5278075 Variovorax paradoxus S110 7974248 YP_002946837.1 CDS Vapar_4967 NC_012791.1 5278165 5278590 D PFAM: OsmC family protein; KEGG: aav:Aave_4272 OsmC family protein; OsmC family protein 5278165..5278590 Variovorax paradoxus S110 7974249 YP_002946838.1 CDS Vapar_4968 NC_012791.1 5278728 5279906 D KEGG: rfr:Rfer_0575 hypothetical protein; hypothetical protein 5278728..5279906 Variovorax paradoxus S110 7974250 YP_002946839.1 CDS Vapar_4969 NC_012791.1 5279940 5280974 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 5279940..5280974 Variovorax paradoxus S110 7974251 YP_002946840.1 CDS Vapar_4970 NC_012791.1 5280971 5281867 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_1842 LysR family transcriptional regulator; LysR family transcriptional regulator complement(5280971..5281867) Variovorax paradoxus S110 7974252 YP_002946841.1 CDS Vapar_4971 NC_012791.1 5281958 5283682 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: aav:Aave_1841 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein 5281958..5283682 Variovorax paradoxus S110 7974253 YP_002946842.1 CDS Vapar_4972 NC_012791.1 5283714 5284700 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_1840 hypothetical protein; hypothetical protein 5283714..5284700 Variovorax paradoxus S110 7974254 YP_002946843.1 CDS Vapar_4973 NC_012791.1 5285031 5286182 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B0089 predicted acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F 5285031..5286182 Variovorax paradoxus S110 7974255 YP_002946844.1 CDS Vapar_4974 NC_012791.1 5286177 5287082 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mes:Meso_0578 LysR family transcriptional regulator; LysR family transcriptional regulator complement(5286177..5287082) Variovorax paradoxus S110 7974256 YP_002946845.1 CDS Vapar_4975 NC_012791.1 5287120 5287605 R KEGG: dac:Daci_1191 hypothetical protein; hypothetical protein complement(5287120..5287605) Variovorax paradoxus S110 7974257 YP_002946846.1 CDS Vapar_4976 NC_012791.1 5287602 5289638 R molecular chaperone; heat shock protein 90 complement(5287602..5289638) Variovorax paradoxus S110 7974258 YP_002946847.1 CDS Vapar_4977 NC_012791.1 5289749 5290792 R PFAM: extracellular solute-binding protein family 1; KEGG: smd:Smed_3752 extracellular solute-binding protein family 1; family 1 extracellular solute-binding protein complement(5289749..5290792) Variovorax paradoxus S110 7974259 YP_002946848.1 CDS Vapar_4978 NC_012791.1 5290850 5291767 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mxa:MXAN_6792 LysR family transcriptional regulator; LysR family transcriptional regulator complement(5290850..5291767) Variovorax paradoxus S110 7974260 YP_002946849.1 CDS Vapar_4979 NC_012791.1 5291865 5292875 D PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_0362 alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 5291865..5292875 Variovorax paradoxus S110 7974261 YP_002946850.1 CDS Vapar_4980 NC_012791.1 5293050 5293766 D TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: dac:Daci_1174 MIP family channel protein; MIP family channel protein 5293050..5293766 Variovorax paradoxus S110 7974262 YP_002946851.1 CDS Vapar_4981 NC_012791.1 5293770 5294108 R hypothetical protein complement(5293770..5294108) Variovorax paradoxus S110 7974263 YP_002946852.1 CDS Vapar_4982 NC_012791.1 5294220 5295623 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: reu:Reut_B5325 sensor histidine kinase; histidine kinase complement(5294220..5295623) Variovorax paradoxus S110 7974264 YP_002946853.1 CDS Vapar_4983 NC_012791.1 5295685 5296341 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rme:Rmet_5326 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(5295685..5296341) Variovorax paradoxus S110 7974265 YP_002946854.1 CDS Vapar_4984 NC_012791.1 5296428 5297549 R KEGG: mxa:MXAN_6210 hypothetical protein; hypothetical protein complement(5296428..5297549) Variovorax paradoxus S110 7974266 YP_002946855.1 CDS Vapar_4985 NC_012791.1 5297560 5298381 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: rfr:Rfer_3544 RNA-binding S4; RNA-binding S4 domain-containing protein complement(5297560..5298381) Variovorax paradoxus S110 7974267 YP_002946856.1 CDS Vapar_4986 NC_012791.1 5298493 5299668 D PFAM: Monogalactosyldiacylglycerol synthase; glycosyltransferase 28 domain; KEGG: bur:Bcep18194_B0550 monogalactosyldiacylglycerol synthase; Monogalactosyldiacylglycerol synthase 5298493..5299668 Variovorax paradoxus S110 7974268 YP_002946857.1 CDS Vapar_4987 NC_012791.1 5299665 5300156 D KEGG: bur:Bcep18194_B0551 hypothetical protein; hypothetical protein 5299665..5300156 Variovorax paradoxus S110 7974269 YP_002946858.1 CDS Vapar_4989 NC_012791.1 5300831 5301961 D PFAM: alcohol dehydrogenase GroES domain protein; KEGG: reh:H16_B0332 NADPH:quinone reductase or related Zn-dependent oxidoreductase; alcohol dehydrogenase GroES domain-containing protein 5300831..5301961 Variovorax paradoxus S110 7974271 YP_002946859.1 CDS Vapar_4990 NC_012791.1 5302110 5302802 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: aav:Aave_0359 two component transcriptional regulator; winged helix family two component transcriptional regulator complement(5302110..5302802) Variovorax paradoxus S110 7974272 YP_002946860.1 CDS Vapar_4991 NC_012791.1 5302807 5305569 R PFAM: osmosensitive K channel His kinase sensor; ATP-binding region ATPase domain protein; UspA domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_0358 osmosensitive K+ channel signal transduction histidine kinase; osmosensitive K channel His kinase sensor complement(5302807..5305569) Variovorax paradoxus S110 7974273 YP_002946861.1 CDS Vapar_4992 NC_012791.1 5305698 5307071 D PFAM: major facilitator superfamily MFS_1; KEGG: bcj:BCAM1616 major facilitator superfamily protein; major facilitator superfamily protein 5305698..5307071 Variovorax paradoxus S110 7974274 YP_002946862.1 CDS Vapar_4993 NC_012791.1 5307108 5307689 R KEGG: pna:Pnap_3602 potassium-transporting ATPase, C subunit; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C complement(5307108..5307689) Variovorax paradoxus S110 7974275 YP_002946863.1 CDS Vapar_4994 NC_012791.1 5307703 5309799 R TIGRFAM: K+-transporting ATPase, subunit beta; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: aav:Aave_0356 K+-transporting ATPase, subunit beta; K+-transporting ATPase subunit beta complement(5307703..5309799) Variovorax paradoxus S110 7974276 YP_002946864.1 CDS Vapar_4995 NC_012791.1 5309811 5311538 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase A complement(5309811..5311538) Variovorax paradoxus S110 7974277 YP_002946865.1 CDS Vapar_4996 NC_012791.1 5311635 5311760 R hypothetical protein complement(5311635..5311760) Variovorax paradoxus S110 7974278 YP_002946866.1 CDS Vapar_4997 NC_012791.1 5311938 5312606 D KEGG: bbr:BB3855 hypothetical protein; transcriptional regulator 5311938..5312606 Variovorax paradoxus S110 7974279 YP_002946867.1 CDS Vapar_4998 NC_012791.1 5312647 5313228 D PFAM: manganese and iron superoxide dismutase; KEGG: aav:Aave_2568 superoxide dismutase; superoxide dismutase 5312647..5313228 Variovorax paradoxus S110 7974280 YP_002946868.1 CDS Vapar_4999 NC_012791.1 5313260 5313637 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll5401 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(5313260..5313637) Variovorax paradoxus S110 7974281 YP_002946869.1 CDS Vapar_5000 NC_012791.1 5313894 5314871 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_3526 hypothetical protein; hypothetical protein 5313894..5314871 Variovorax paradoxus S110 7974282 YP_002946870.1 CDS Vapar_5001 NC_012791.1 5314932 5315984 D PFAM: beta-lactamase domain protein; KEGG: hypothetical protein; beta-lactamase domain-containing protein 5314932..5315984 Variovorax paradoxus S110 7974283 YP_002946871.1 CDS Vapar_5002 NC_012791.1 5315997 5316254 R KEGG: pna:Pnap_2620 hypothetical protein; hypothetical protein complement(5315997..5316254) Variovorax paradoxus S110 7974284 YP_002946872.1 CDS Vapar_5003 NC_012791.1 5316277 5317047 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dac:Daci_4337 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(5316277..5317047) Variovorax paradoxus S110 7974285 YP_002946873.1 CDS Vapar_5004 NC_012791.1 5317109 5317582 R KEGG: aav:Aave_4207 hypothetical protein; hypothetical protein complement(5317109..5317582) Variovorax paradoxus S110 7974122 YP_002946874.1 CDS Vapar_5005 NC_012791.1 5317579 5318364 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; KEGG: ajs:Ajs_0473 Crp/FNR family transcriptional regulator; Crp/Fnr family transcriptional regulator complement(5317579..5318364) Variovorax paradoxus S110 7974123 YP_002946875.1 CDS Vapar_5006 NC_012791.1 5318449 5320404 D PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 5318449..5320404 Variovorax paradoxus S110 7974124 YP_002946876.1 CDS Vapar_5007 NC_012791.1 5320401 5321186 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dia:Dtpsy_0460 ABC transporter; ABC transporter 5320401..5321186 Variovorax paradoxus S110 7974125 YP_002946877.1 CDS Vapar_5008 NC_012791.1 5321188 5322117 D PFAM: inner-membrane translocator; KEGG: lch:Lcho_3436 inner-membrane translocator; inner-membrane translocator 5321188..5322117 Variovorax paradoxus S110 7974126 YP_002946878.1 CDS Vapar_5009 NC_012791.1 5322207 5323271 D PFAM: inner-membrane translocator; KEGG: lch:Lcho_3437 inner-membrane translocator; inner-membrane translocator 5322207..5323271 Variovorax paradoxus S110 7974127 YP_002946879.1 CDS Vapar_5010 NC_012791.1 5323323 5324654 D KEGG: lch:Lcho_3438 hypothetical protein; hypothetical protein 5323323..5324654 Variovorax paradoxus S110 7974128 YP_002946880.1 CDS Vapar_5011 NC_012791.1 5324741 5325553 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: lch:Lcho_3439 ABC transporter-related protein; ABC transporter 5324741..5325553 Variovorax paradoxus S110 7974129 YP_002946881.1 CDS Vapar_5012 NC_012791.1 5325645 5326895 D KEGG: dia:Dtpsy_0455 phenylacetate-CoA ligase; phenylacetate-CoA ligase 5325645..5326895 Variovorax paradoxus S110 7974130 YP_002946882.1 CDS Vapar_5013 NC_012791.1 5326941 5327516 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rce:RC1_2891 intracellular protease, PFpI family protein; intracellular protease, PfpI family complement(5326941..5327516) Variovorax paradoxus S110 7974131 YP_002946883.1 CDS Vapar_5015 NC_012791.1 5329056 5330030 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_0488 hypothetical protein; hypothetical protein 5329056..5330030 Variovorax paradoxus S110 7974133 YP_002946884.1 CDS Vapar_5016 NC_012791.1 5330107 5332227 R KEGG: bmj:BMULJ_02752 glucoamylase; hypothetical protein complement(5330107..5332227) Variovorax paradoxus S110 7974134 YP_002946885.1 CDS Vapar_5017 NC_012791.1 5332409 5333389 D PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: dac:Daci_2336 LuxR family transcriptional regulator; LuxR family transcriptional regulator 5332409..5333389 Variovorax paradoxus S110 7974135 YP_002946886.1 CDS Vapar_5018 NC_012791.1 5333423 5335516 R KEGG: vei:Veis_0427 pyrrolo-quinoline quinone; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; PQQ-dependent dehydrogenase complement(5333423..5335516) Variovorax paradoxus S110 7974136 YP_002946887.1 CDS Vapar_5019 NC_012791.1 5335676 5336956 D PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: vei:Veis_0426 fis family transcriptional regulator; Fis family transcriptional regulator 5335676..5336956 Variovorax paradoxus S110 7974137 YP_002946888.1 CDS Vapar_5020 NC_012791.1 5336961 5339399 R KEGG: aav:Aave_0411 quinoprotein glucose dehydrogenase; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family complement(5336961..5339399) Variovorax paradoxus S110 7974138 YP_002946889.1 CDS Vapar_5021 NC_012791.1 5339515 5340678 R PFAM: ROK family protein; KEGG: csa:Csal_1730 transcriptional repressor of the xylose operon; ROK family protein complement(5339515..5340678) Variovorax paradoxus S110 7974139 YP_002946890.1 CDS Vapar_5022 NC_012791.1 5340698 5341474 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ara:Arad_3366 xylose ABC transporter; ABC transporter complement(5340698..5341474) Variovorax paradoxus S110 7974140 YP_002946891.1 CDS Vapar_5023 NC_012791.1 5341826 5343016 R PFAM: inner-membrane translocator; KEGG: rlt:Rleg2_2926 inner-membrane translocator; inner-membrane translocator complement(5341826..5343016) Variovorax paradoxus S110 7974141 YP_002946892.1 CDS Vapar_5024 NC_012791.1 5343127 5344149 R TIGRFAM: D-xylose ABC transporter periplasmic substrate-binding protein; KEGG: atc:AGR_L_2505 D-xylose-binding periplasmic protein precursor; D-xylose ABC transporter periplasmic substrate-binding protein complement(5343127..5344149) Variovorax paradoxus S110 7974142 YP_002946893.1 CDS Vapar_5025 NC_012791.1 5344393 5344833 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bpt:Bpet0477 dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 5344393..5344833 Variovorax paradoxus S110 7974143 YP_002946894.1 CDS Vapar_5026 NC_012791.1 5344843 5345754 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: lch:Lcho_4024 extracellular solute-binding protein; family 3 extracellular solute-binding protein 5344843..5345754 Variovorax paradoxus S110 7974144 YP_002946895.1 CDS Vapar_5027 NC_012791.1 5345794 5346660 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ara:Arad_4506 transcriptional regulator protein; LysR family transcriptional regulator 5345794..5346660 Variovorax paradoxus S110 7974145 YP_002946896.1 CDS Vapar_5028 NC_012791.1 5346654 5349203 R PFAM: flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; KEGG: dac:Daci_0530 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase complement(5346654..5349203) Variovorax paradoxus S110 7974146 YP_002946897.1 CDS Vapar_5029 NC_012791.1 5349256 5351382 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: rso:RSc0800 ferrisiderophore receptor signal peptide protein; TonB-dependent siderophore receptor complement(5349256..5351382) Variovorax paradoxus S110 7974147 YP_002946898.1 CDS Vapar_5030 NC_012791.1 5351595 5352608 D PFAM: dehydrogenase E1 component; KEGG: vei:Veis_2230 pyruvate dehydrogenase (acetyl-transferring); pyruvate dehydrogenase 5351595..5352608 Variovorax paradoxus S110 7974148 YP_002946899.1 CDS Vapar_5031 NC_012791.1 5352599 5353561 D PFAM: transketolase; transketolase domain protein; KEGG: bpe:BP0628 pyruvate dehydrogenase E1 subunit beta; transketolase 5352599..5353561 Variovorax paradoxus S110 7974149 YP_002946900.1 CDS Vapar_5032 NC_012791.1 5353575 5353997 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bbt:BBta_1325 MarR family transcriptional regulator; MarR family transcriptional regulator 5353575..5353997 Variovorax paradoxus S110 7974150 YP_002946901.1 CDS Vapar_5033 NC_012791.1 5354001 5354762 R member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria; short chain dehydrogenase complement(5354001..5354762) Variovorax paradoxus S110 7974151 YP_002946902.1 CDS Vapar_5034 NC_012791.1 5354879 5355805 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_3875 LysR family transcriptional regulator; LysR family transcriptional regulator 5354879..5355805 Variovorax paradoxus S110 7974152 YP_002946903.1 CDS Vapar_5035 NC_012791.1 5355869 5356888 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_0779 hypothetical protein; hypothetical protein 5355869..5356888 Variovorax paradoxus S110 7974153 YP_002946904.1 CDS Vapar_5036 NC_012791.1 5357001 5357324 R PFAM: Domain of unknown function DUF1840; KEGG: dac:Daci_1148 hypothetical protein; hypothetical protein complement(5357001..5357324) Variovorax paradoxus S110 7974154 YP_002946905.1 CDS Vapar_5037 NC_012791.1 5357337 5358605 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: pol:Bpro_3190 cyclopropane-fatty-acyl-phospholipid synthase; Cyclopropane-fatty-acyl-phospholipid synthase complement(5357337..5358605) Variovorax paradoxus S110 7974155 YP_002946906.1 CDS Vapar_5038 NC_012791.1 5358761 5361109 D catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase 5358761..5361109 Variovorax paradoxus S110 7974156 YP_002946907.1 CDS Vapar_5039 NC_012791.1 5361111 5361587 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pol:Bpro_0592 MarR family transcriptional regulator; MarR family transcriptional regulator 5361111..5361587 Variovorax paradoxus S110 7974157 YP_002946908.1 CDS Vapar_5040 NC_012791.1 5361584 5362438 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 5361584..5362438 Variovorax paradoxus S110 7974158 YP_002946909.1 CDS Vapar_5041 NC_012791.1 5362442 5363635 D PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: pna:Pnap_3620 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein 5362442..5363635 Variovorax paradoxus S110 7974159 YP_002946910.1 CDS Vapar_5042 NC_012791.1 5363641 5365269 D PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_0589 benzoate-CoA ligase family; AMP-dependent synthetase and ligase 5363641..5365269 Variovorax paradoxus S110 7974160 YP_002946911.1 CDS Vapar_5043 NC_012791.1 5365266 5365664 D PFAM: endoribonuclease L-PSP; KEGG: pna:Pnap_3623 endoribonuclease L-PSP; endoribonuclease L-PSP 5365266..5365664 Variovorax paradoxus S110 7974161 YP_002946912.1 CDS rplQ NC_012791.1 5365912 5366310 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(5365912..5366310) Variovorax paradoxus S110 7974163 YP_002946913.1 CDS Vapar_5045 NC_012791.1 5366394 5367383 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(5366394..5367383) Variovorax paradoxus S110 7974164 YP_002946914.1 CDS rpsD NC_012791.1 5367512 5368135 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(5367512..5368135) Variovorax paradoxus S110 7974165 YP_002946915.1 CDS Vapar_5047 NC_012791.1 5368267 5368671 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(5368267..5368671) Variovorax paradoxus S110 7974166 YP_002946916.1 CDS Vapar_5048 NC_012791.1 5368684 5369049 R PFAM: ribosomal protein S13; KEGG: aav:Aave_0623 30S ribosomal protein S13; 30S ribosomal protein S13 complement(5368684..5369049) Variovorax paradoxus S110 7974167 YP_002946917.1 CDS Vapar_5049 NC_012791.1 5369073 5369186 R TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: pna:Pnap_0341 ribosomal protein L36; 50S ribosomal protein L36 complement(5369073..5369186) Variovorax paradoxus S110 7974168 YP_002946918.1 CDS secY NC_012791.1 5369261 5370574 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(5369261..5370574) Variovorax paradoxus S110 7974169 YP_002946919.1 CDS rplO NC_012791.1 5370601 5371032 R late assembly protein; 50S ribosomal protein L15 complement(5370601..5371032) Variovorax paradoxus S110 7974170 YP_002946920.1 CDS rpmD NC_012791.1 5371044 5371229 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(5371044..5371229) Variovorax paradoxus S110 7974171 YP_002946921.1 CDS rpsE NC_012791.1 5371265 5371783 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(5371265..5371783) Variovorax paradoxus S110 7974172 YP_002946922.1 CDS rplR NC_012791.1 5371802 5372170 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(5371802..5372170) Variovorax paradoxus S110 7974173 YP_002946923.1 CDS rplF NC_012791.1 5372182 5372715 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(5372182..5372715) Variovorax paradoxus S110 7974174 YP_002946924.1 CDS Vapar_5056 NC_012791.1 5372740 5373135 R PFAM: ribosomal protein S8; KEGG: dia:Dtpsy_0387 ribosomal protein S8; 30S ribosomal protein S8 complement(5372740..5373135) Variovorax paradoxus S110 7974175 YP_002946925.1 CDS rpsN NC_012791.1 5373156 5373461 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(5373156..5373461) Variovorax paradoxus S110 7974176 YP_002946926.1 CDS Vapar_5058 NC_012791.1 5373470 5374009 R PFAM: ribosomal protein L5; KEGG: aav:Aave_0613 50S ribosomal protein L5; 50S ribosomal protein L5 complement(5373470..5374009) Variovorax paradoxus S110 7974177 YP_002946927.1 CDS rplX NC_012791.1 5374021 5374353 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(5374021..5374353) Variovorax paradoxus S110 7974178 YP_002946928.1 CDS rplN NC_012791.1 5374367 5374735 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(5374367..5374735) Variovorax paradoxus S110 7974179 YP_002946929.1 CDS Vapar_5061 NC_012791.1 5374985 5376130 D KEGG: aav:Aave_3774 hypothetical protein; hypothetical protein 5374985..5376130 Variovorax paradoxus S110 7974180 YP_002946930.1 CDS Vapar_5062 NC_012791.1 5376127 5376984 D KEGG: pna:Pnap_0327 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 5376127..5376984 Variovorax paradoxus S110 7974181 YP_002946931.1 CDS Vapar_5063 NC_012791.1 5376991 5377458 R PFAM: MaoC domain protein dehydratase; KEGG: bcs:BCAN_B0989 dehydratase; MaoC domain-containing protein dehydratase complement(5376991..5377458) Variovorax paradoxus S110 7974182 YP_002946932.1 CDS Vapar_5064 NC_012791.1 5377482 5378342 R TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: aav:Aave_0596 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyl transferase complement(5377482..5378342) Variovorax paradoxus S110 7974183 YP_002946933.1 CDS Vapar_5065 NC_012791.1 5378401 5378967 R PFAM: Ferritin Dps family protein; KEGG: pna:Pnap_0325 ferritin, Dps family protein; Ferritin Dps family protein complement(5378401..5378967) Variovorax paradoxus S110 7974184 YP_002946934.1 CDS Vapar_5066 NC_012791.1 5379109 5380074 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0368 LysR family transcriptional regulator; LysR family transcriptional regulator complement(5379109..5380074) Variovorax paradoxus S110 7974185 YP_002946935.1 CDS Vapar_5067 NC_012791.1 5380167 5380799 D PFAM: lysine exporter (LYSE/YGGA); integral membrane protein TerC; KEGG: pau:PA14_16960 amino acid transporter LysE; lysine exporter LysE/YggA 5380167..5380799 Variovorax paradoxus S110 7974186 YP_002946936.1 CDS Vapar_5068 NC_012791.1 5380809 5382938 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(5380809..5382938) Variovorax paradoxus S110 7974187 YP_002946937.1 CDS Vapar_5069 NC_012791.1 5383023 5384069 D TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: rfr:Rfer_0628 S-adenosylmethionine; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 5383023..5384069 Variovorax paradoxus S110 7974188 YP_002946938.1 CDS Vapar_5070 NC_012791.1 5384066 5385319 D PFAM: NHL repeat containing protein; KEGG: bbt:BBta_2954 hypothetical protein; NHL repeat containing protein 5384066..5385319 Variovorax paradoxus S110 7974189 YP_002946939.1 CDS tgt NC_012791.1 5385316 5386515 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 5385316..5386515 Variovorax paradoxus S110 7974190 YP_002946940.1 CDS Vapar_5072 NC_012791.1 5386525 5386986 R KEGG: xau:Xaut_0636 hypothetical protein; hypothetical protein complement(5386525..5386986) Variovorax paradoxus S110 7974191 YP_002946941.1 CDS Vapar_5073 NC_012791.1 5387031 5387816 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_0433 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 5387031..5387816 Variovorax paradoxus S110 7974192 YP_002946942.1 CDS Vapar_5074 NC_012791.1 5387950 5388327 R KEGG: bph:Bphy_5538 hypothetical protein; hypothetical protein complement(5387950..5388327) Variovorax paradoxus S110 7974193 YP_002946943.1 CDS Vapar_5075 NC_012791.1 5388472 5389530 R KEGG: aav:Aave_4487 hypothetical protein; hypothetical protein complement(5388472..5389530) Variovorax paradoxus S110 7974194 YP_002946944.1 CDS Vapar_5076 NC_012791.1 5389561 5390358 R KEGG: dia:Dtpsy_3146 hypothetical protein; hypothetical protein complement(5389561..5390358) Variovorax paradoxus S110 7974195 YP_002946945.1 CDS Vapar_5077 NC_012791.1 5390355 5390858 R KEGG: dia:Dtpsy_3147 hypothetical protein; hypothetical protein complement(5390355..5390858) Variovorax paradoxus S110 7974196 YP_002946946.1 CDS Vapar_5078 NC_012791.1 5390855 5391361 R PFAM: YiaAB two helix domain protein; KEGG: ajs:Ajs_3875 hypothetical protein; YiaAB two helix domain-containing protein complement(5390855..5391361) Variovorax paradoxus S110 7974197 YP_002946947.1 CDS Vapar_5079 NC_012791.1 5391487 5393445 R PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: dia:Dtpsy_3151 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(5391487..5393445) Variovorax paradoxus S110 7974198 YP_002946948.1 CDS Vapar_5080 NC_012791.1 5393460 5394320 R KEGG: vei:Veis_1658 hypothetical protein; hypothetical protein complement(5393460..5394320) Variovorax paradoxus S110 7974199 YP_002946949.1 CDS Vapar_5081 NC_012791.1 5394459 5395193 D SMART: helix-turn-helix domain protein; KEGG: pna:Pnap_0307 helix-turn-helix domain-containing protein; helix-turn-helix domain-containing protein 5394459..5395193 Variovorax paradoxus S110 7974200 YP_002946950.1 CDS pyrF NC_012791.1 5395197 5396021 R type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(5395197..5396021) Variovorax paradoxus S110 7974201 YP_002946951.1 CDS Vapar_5083 NC_012791.1 5396055 5396837 R PFAM: uracil-DNA glycosylase superfamily; KEGG: aav:Aave_4571 phage SPO1 DNA polymerase-related protein; uracil-DNA glycosylase superfamily protein complement(5396055..5396837) Variovorax paradoxus S110 7974202 YP_002946952.1 CDS Vapar_5084 NC_012791.1 5396834 5397376 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_3290 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(5396834..5397376) Variovorax paradoxus S110 7971455 YP_002946953.1 CDS Vapar_5085 NC_012791.1 5397438 5398157 R PFAM: peptidase M22 glycoprotease; KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease; peptidase M22 glycoprotease complement(5397438..5398157) Variovorax paradoxus S110 7971456 YP_002946954.1 CDS Vapar_5086 NC_012791.1 5398150 5399166 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: rfr:Rfer_0190 hypothetical protein; hypothetical protein complement(5398150..5399166) Variovorax paradoxus S110 7971457 YP_002946955.1 CDS Vapar_5087 NC_012791.1 5399238 5400002 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: bph:Bphy_3264 DeoR family transcriptional regulator; DeoR family transcriptional regulator complement(5399238..5400002) Variovorax paradoxus S110 7971458 YP_002946956.1 CDS Vapar_5088 NC_012791.1 5400070 5400672 D PFAM: NUDIX hydrolase; KEGG: cak:Caul_4842 NUDIX hydrolase; NUDIX hydrolase 5400070..5400672 Variovorax paradoxus S110 7971459 YP_002946957.1 CDS Vapar_5089 NC_012791.1 5400681 5402114 D KEGG: rfr:Rfer_0191 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 5400681..5402114 Variovorax paradoxus S110 7971460 YP_002946958.1 CDS Vapar_5090 NC_012791.1 5402244 5403827 D KEGG: pna:Pnap_1828 hypothetical protein; hypothetical protein 5402244..5403827 Variovorax paradoxus S110 7971461 YP_002946959.1 CDS Vapar_5091 NC_012791.1 5403844 5404845 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein; KEGG: aav:Aave_4564 translation factor SUA5; Sua5/YciO/YrdC/YwlC family protein complement(5403844..5404845) Variovorax paradoxus S110 7971462 YP_002946960.1 CDS Vapar_5092 NC_012791.1 5404842 5406038 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(5404842..5406038) Variovorax paradoxus S110 7971463 YP_002946961.1 CDS Vapar_5093 NC_012791.1 5406035 5406583 R KEGG: dac:Daci_0990 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(5406035..5406583) Variovorax paradoxus S110 7971464 YP_002946962.1 CDS Vapar_5094 NC_012791.1 5406620 5407540 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_3279 thioredoxin; thioredoxin 5406620..5407540 Variovorax paradoxus S110 7971465 YP_002946963.1 CDS Vapar_5095 NC_012791.1 5407656 5408108 D PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: csa:Csal_0798 protein of unknown function DUF306, MetA and HslJ; hypothetical protein 5407656..5408108 Variovorax paradoxus S110 7971466 YP_002946964.1 CDS Vapar_5096 NC_012791.1 5408134 5409039 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(5408134..5409039) Variovorax paradoxus S110 7971467 YP_002946965.1 CDS Vapar_5097 NC_012791.1 5409146 5410210 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(5409146..5410210) Variovorax paradoxus S110 7971468 YP_002946966.1 CDS Vapar_5098 NC_012791.1 5410346 5410855 R PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: mpt:Mpe_A3597 AsnC family transcriptional regulator; AsnC family transcriptional regulator complement(5410346..5410855) Variovorax paradoxus S110 7971469 YP_002946967.1 CDS Vapar_5099 NC_012791.1 5410992 5412008 D catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate; 1-aminocyclopropane-1-carboxylate deaminase 5410992..5412008 Variovorax paradoxus S110 7971470 YP_002946968.1 CDS Vapar_5100 NC_012791.1 5412015 5413463 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(5412015..5413463) Variovorax paradoxus S110 7971471 YP_002946969.1 CDS Vapar_5101 NC_012791.1 5413548 5414780 R PFAM: phosphoglycerate kinase; KEGG: ajs:Ajs_4056 phosphoglycerate kinase; phosphoglycerate kinase complement(5413548..5414780) Variovorax paradoxus S110 7971472 YP_002946970.1 CDS Vapar_5102 NC_012791.1 5414836 5415744 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_3346 LysR family transcriptional regulator; LysR family transcriptional regulator complement(5414836..5415744) Variovorax paradoxus S110 7971473 YP_002946971.1 CDS Vapar_5103 NC_012791.1 5415834 5416382 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_3717 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 5415834..5416382 Variovorax paradoxus S110 7971474 YP_002946972.1 CDS Vapar_5104 NC_012791.1 5416375 5417496 D KEGG: swi:Swit_3408 hypothetical protein; hypothetical protein 5416375..5417496 Variovorax paradoxus S110 7971475 YP_002946973.1 CDS Vapar_5105 NC_012791.1 5417504 5419156 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: vei:Veis_3422 monooxygenase, FAD-binding; FAD-binding monooxygenase 5417504..5419156 Variovorax paradoxus S110 7971476 YP_002946974.1 CDS Vapar_5106 NC_012791.1 5419153 5419362 D KEGG: vei:Veis_3423 hypothetical protein; hypothetical protein 5419153..5419362 Variovorax paradoxus S110 7971477 YP_002946975.1 CDS Vapar_5107 NC_012791.1 5419359 5420324 D PFAM: beta-lactamase domain protein; KEGG: mno:Mnod_1197 beta-lactamase domain protein; beta-lactamase domain-containing protein 5419359..5420324 Variovorax paradoxus S110 7971478 YP_002946976.1 CDS Vapar_5108 NC_012791.1 5420365 5421339 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_0744 hypothetical protein; hypothetical protein 5420365..5421339 Variovorax paradoxus S110 7971479 YP_002946977.1 CDS Vapar_5109 NC_012791.1 5421353 5421688 R PFAM: branched-chain amino acid transport; KEGG: pol:Bpro_4636 branched-chain amino acid transport; branched-chain amino acid transport complement(5421353..5421688) Variovorax paradoxus S110 7971480 YP_002946978.1 CDS Vapar_5110 NC_012791.1 5421685 5422425 R PFAM: AzlC family protein; KEGG: pol:Bpro_4637 AzlC-like; AzlC family protein complement(5421685..5422425) Variovorax paradoxus S110 7971481 YP_002946979.1 CDS Vapar_5111 NC_012791.1 5422425 5423381 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: rfr:Rfer_3859 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(5422425..5423381) Variovorax paradoxus S110 7971482 YP_002946980.1 CDS Vapar_5112 NC_012791.1 5423378 5423878 R KEGG: dac:Daci_0832 lipoprotein transmembrane; lipoprotein transmembrane complement(5423378..5423878) Variovorax paradoxus S110 7971483 YP_002946981.1 CDS Vapar_5113 NC_012791.1 5423875 5424396 R KEGG: aav:Aave_4688 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(5423875..5424396) Variovorax paradoxus S110 7971484 YP_002946982.1 CDS Vapar_5114 NC_012791.1 5424557 5425774 D PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: rfr:Rfer_3861 peptidoglycan-binding LysM; peptidoglycan-binding LysM 5424557..5425774 Variovorax paradoxus S110 7971485 YP_002946983.1 CDS Vapar_5115 NC_012791.1 5425808 5426956 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: ajs:Ajs_4049 fis family transcriptional regulator; DNA protecting protein DprA 5425808..5426956 Variovorax paradoxus S110 7971486 YP_002946984.1 CDS Vapar_5116 NC_012791.1 5427058 5427576 D PFAM: protein of unknown function DUF494; KEGG: pol:Bpro_4642 protein of unknown function DUF494; hypothetical protein 5427058..5427576 Variovorax paradoxus S110 7971487 YP_002946985.1 CDS Vapar_5117 NC_012791.1 5427600 5430014 R KEGG: pol:Bpro_4643 protein of unknown function DUF1631; hypothetical protein complement(5427600..5430014) Variovorax paradoxus S110 7971488 YP_002946986.1 CDS secF NC_012791.1 5430155 5431114 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(5430155..5431114) Variovorax paradoxus S110 7971489 YP_002946987.1 CDS secD NC_012791.1 5431133 5433016 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(5431133..5433016) Variovorax paradoxus S110 7971490 YP_002946988.1 CDS Vapar_5120 NC_012791.1 5433118 5433396 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pol:Bpro_4646 protein translocase subunit YajC; preprotein translocase subunit YajC complement(5433118..5433396) Variovorax paradoxus S110 7971491 YP_002946989.1 CDS Vapar_5121 NC_012791.1 5433726 5437334 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(5433726..5437334) Variovorax paradoxus S110 7971492 YP_002946990.1 CDS Vapar_5122 NC_012791.1 5437515 5437991 D PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: dia:Dtpsy_3359 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 5437515..5437991 Variovorax paradoxus S110 7971493 YP_002946991.1 CDS Vapar_5123 NC_012791.1 5438056 5438814 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: rfr:Rfer_3807 extracellular solute-binding protein; family 3 extracellular solute-binding protein 5438056..5438814 Variovorax paradoxus S110 7971494 YP_002946992.1 CDS Vapar_5124 NC_012791.1 5438847 5439617 D TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3808 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane subunit 5438847..5439617 Variovorax paradoxus S110 7971495 YP_002946993.1 CDS Vapar_5125 NC_012791.1 5439633 5441261 D PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0736 protein of unknown function DUF894, DitE; hypothetical protein 5439633..5441261 Variovorax paradoxus S110 7971496 YP_002946994.1 CDS Vapar_5126 NC_012791.1 5441279 5441593 R KEGG: pol:Bpro_0730 hypothetical protein; hypothetical protein complement(5441279..5441593) Variovorax paradoxus S110 7971497 YP_002946995.1 CDS Vapar_5127 NC_012791.1 5441611 5442315 R PFAM: cytochrome C oxidase subunit III; KEGG: pol:Bpro_0729 cytochrome C oxidase subunit III; cytochrome C oxidase subunit III complement(5441611..5442315) Variovorax paradoxus S110 7971498 YP_002946996.1 CDS Vapar_5128 NC_012791.1 5442327 5442956 R KEGG: har:HEAR1117 cytochrome oxidase subunit III oxidase polypeptide I (cytochrome BB3 subunit 1) oxidoreductase protein; cytochrome oxidase subunit III oxidase polypeptide I complement(5442327..5442956) Variovorax paradoxus S110 7971499 YP_002946997.1 CDS Vapar_5129 NC_012791.1 5442953 5444725 R KEGG: pol:Bpro_0727 cytochrome-c oxidase; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I complement(5442953..5444725) Variovorax paradoxus S110 7971500 YP_002946998.1 CDS Vapar_5130 NC_012791.1 5444722 5445876 R PFAM: cytochrome C oxidase subunit II; cytochrome C class I; KEGG: pol:Bpro_0726 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II complement(5444722..5445876) Variovorax paradoxus S110 7971501 YP_002946999.1 CDS Vapar_5131 NC_012791.1 5445923 5446438 R KEGG: mpt:Mpe_A3645 transmembrane protein; transmembrane protein complement(5445923..5446438) Variovorax paradoxus S110 7971502 YP_002947000.1 CDS Vapar_5132 NC_012791.1 5446635 5447456 D PFAM: Creatininase; KEGG: vei:Veis_3147 creatininase; Creatininase 5446635..5447456 Variovorax paradoxus S110 7971503 YP_002947001.1 CDS Vapar_5133 NC_012791.1 5447470 5448270 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_3146 ABC transporter; ABC transporter 5447470..5448270 Variovorax paradoxus S110 7971504 YP_002947002.1 CDS Vapar_5134 NC_012791.1 5448248 5449132 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3145 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 5448248..5449132 Variovorax paradoxus S110 7971505 YP_002947003.1 CDS Vapar_5135 NC_012791.1 5449137 5450501 D PFAM: FAD linked oxidase; KEGG: vei:Veis_3144 FAD linked oxidase domain-containing protein; FAD linked oxidase 5449137..5450501 Variovorax paradoxus S110 7971506 YP_002947004.1 CDS Vapar_5136 NC_012791.1 5450875 5451903 D PFAM: NMT1/THI5 like domain protein; KEGG: vei:Veis_3143 perplasmic binding protein of ABC transporter; NMT1/THI5 like domain-containing protein 5450875..5451903 Variovorax paradoxus S110 7971507 YP_002947005.1 CDS Vapar_5137 NC_012791.1 5452045 5452635 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: vei:Veis_3142 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 5452045..5452635 Variovorax paradoxus S110 7971508 YP_002947006.1 CDS Vapar_5138 NC_012791.1 5452661 5453638 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: vei:Veis_3141 ferredoxin; ferredoxin 5452661..5453638 Variovorax paradoxus S110 7971509 YP_002947007.1 CDS Vapar_5139 NC_012791.1 5453635 5454306 D PFAM: Tetracycline transcriptional regulator YcdC domain protein; regulatory protein TetR; KEGG: oan:Oant_3875 transcriptional regulator, TetR family; TetR family transcriptional regulator 5453635..5454306 Variovorax paradoxus S110 7971510 YP_002947008.1 CDS Vapar_5140 NC_012791.1 5454299 5454766 R PFAM: endoribonuclease L-PSP; KEGG: vei:Veis_3140 endoribonuclease L-PSP; endoribonuclease L-PSP complement(5454299..5454766) Variovorax paradoxus S110 7971511 YP_002947009.1 CDS Vapar_5141 NC_012791.1 5454763 5455962 R PFAM: amidohydrolase; amidohydrolase; KEGG: vei:Veis_3139 amidohydrolase 3; amidohydrolase complement(5454763..5455962) Variovorax paradoxus S110 7971512 YP_002947010.1 CDS Vapar_5142 NC_012791.1 5455959 5456777 R PFAM: xylose isomerase; KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; hydroxypyruvate isomerase complement(5455959..5456777) Variovorax paradoxus S110 7971513 YP_002947011.1 CDS Vapar_5143 NC_012791.1 5456803 5457471 R PFAM: class II aldolase/adducin family protein; KEGG: rfr:Rfer_0444 aldolase; aldolase complement(5456803..5457471) Variovorax paradoxus S110 7971514 YP_002947012.1 CDS Vapar_5144 NC_012791.1 5457784 5459052 R PFAM: type III effector Hrp-dependent outers; KEGG: pol:Bpro_4878 type III effector Hrp-dependent outers; Hrp-dependent type III effector protein complement(5457784..5459052) Variovorax paradoxus S110 7971515 YP_002947013.1 CDS Vapar_5145 NC_012791.1 5459056 5460084 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: vei:Veis_3138 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(5459056..5460084) Variovorax paradoxus S110 7971516 YP_002947014.1 CDS Vapar_5146 NC_012791.1 5460106 5461029 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rfr:Rfer_0446 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase complement(5460106..5461029) Variovorax paradoxus S110 7971517 YP_002947015.1 CDS Vapar_5147 NC_012791.1 5461046 5462368 R PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_2813 major facilitator transporter; major facilitator superfamily protein complement(5461046..5462368) Variovorax paradoxus S110 7971518 YP_002947016.1 CDS Vapar_5148 NC_012791.1 5462544 5463320 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rfr:Rfer_0447 GntR-like; GntR family transcriptional regulator complement(5462544..5463320) Variovorax paradoxus S110 7971519 YP_002947017.1 CDS Vapar_5149 NC_012791.1 5463388 5466054 R paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 complement(5463388..5466054) Variovorax paradoxus S110 7971520 YP_002947018.1 CDS Vapar_5150 NC_012791.1 5466160 5466624 D PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: pol:Bpro_3830 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 5466160..5466624 Variovorax paradoxus S110 7971521 YP_002947019.1 CDS Vapar_5151 NC_012791.1 5466649 5468916 R PFAM: protein of unknown function DUF839; KEGG: eba:ebA1724 phosphatase; hypothetical protein complement(5466649..5468916) Variovorax paradoxus S110 7971522 YP_002947020.1 CDS Vapar_5152 NC_012791.1 5469026 5470174 R PFAM: MltA domain protein; 3D domain protein; KEGG: dia:Dtpsy_3363 MltA domain protein; MltA domain-containing protein complement(5469026..5470174) Variovorax paradoxus S110 7971523 YP_002947021.1 CDS Vapar_5153 NC_012791.1 5470239 5470337 D hypothetical protein 5470239..5470337 Variovorax paradoxus S110 7971524 YP_002947022.1 CDS Vapar_5154 NC_012791.1 5470535 5471194 D PFAM: OmpA/MotB domain protein; KEGG: dac:Daci_0844 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein 5470535..5471194 Variovorax paradoxus S110 7971525 YP_002947023.1 CDS Vapar_5155 NC_012791.1 5471293 5471856 D PFAM: OmpA/MotB domain protein; KEGG: dac:Daci_0844 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein 5471293..5471856 Variovorax paradoxus S110 7971526 YP_002947024.1 CDS Vapar_5156 NC_012791.1 5471861 5472487 R PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: aav:Aave_4653 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator complement(5471861..5472487) Variovorax paradoxus S110 7971527 YP_002947025.1 CDS Vapar_5157 NC_012791.1 5472531 5474582 R KEGG: aav:Aave_4654 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase complement(5472531..5474582) Variovorax paradoxus S110 7971528 YP_002947026.1 CDS Vapar_5158 NC_012791.1 5474583 5475398 R PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dia:Dtpsy_3367 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(5474583..5475398) Variovorax paradoxus S110 7971529 YP_002947027.1 CDS Vapar_5159 NC_012791.1 5475415 5479599 R KEGG: rfr:Rfer_0366 hypothetical protein; hypothetical protein complement(5475415..5479599) Variovorax paradoxus S110 7971530 YP_002947028.1 CDS Vapar_5160 NC_012791.1 5479625 5482420 D PFAM: GlnD PII-uridylyltransferase; glutamate-ammonia ligase adenylyltransferase; KEGG: ajs:Ajs_4019 (glutamate--ammonia-ligase) adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 5479625..5482420 Variovorax paradoxus S110 7971531 YP_002947029.1 CDS Vapar_5161 NC_012791.1 5482413 5483588 D TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: mpt:Mpe_A3528 lipoprotein; lipoprotein A 5482413..5483588 Variovorax paradoxus S110 7971532 YP_002947030.1 CDS Vapar_5162 NC_012791.1 5483598 5484065 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: pol:Bpro_2923 alkylhydroperoxidase AhpD core; alkylhydroperoxidase like protein complement(5483598..5484065) Variovorax paradoxus S110 7971533 YP_002947031.1 CDS Vapar_5163 NC_012791.1 5484157 5485038 R TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pol:Bpro_2922 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 subunit complement(5484157..5485038) Variovorax paradoxus S110 7971534 YP_002947032.1 CDS Vapar_5164 NC_012791.1 5485079 5485936 R KEGG: pol:Bpro_4658 hypothetical protein; hypothetical protein complement(5485079..5485936) Variovorax paradoxus S110 7971535 YP_002947033.1 CDS Vapar_5165 NC_012791.1 5486067 5486675 D PFAM: glutathione peroxidase; KEGG: pol:Bpro_4659 glutathione peroxidase; peroxiredoxin 5486067..5486675 Variovorax paradoxus S110 7969824 YP_002947034.1 CDS Vapar_5166 NC_012791.1 5486965 5487576 R PFAM: glutathione S-transferase domain; KEGG: aav:Aave_4668 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein complement(5486965..5487576) Variovorax paradoxus S110 7969825 YP_002947035.1 CDS Vapar_5167 NC_012791.1 5487698 5489077 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 5487698..5489077 Variovorax paradoxus S110 7969826 YP_002947036.1 CDS Vapar_5168 NC_012791.1 5489213 5490355 D PFAM: PepSY-associated TM helix domain protein; KEGG: mms:mma_3622 iron-regulated membrane protein; PepSY-associated TM helix domain-containing protein 5489213..5490355 Variovorax paradoxus S110 7969827 YP_002947037.1 CDS Vapar_5169 NC_012791.1 5490401 5492572 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_2453 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 5490401..5492572 Variovorax paradoxus S110 7969828 YP_002947038.1 CDS Vapar_5170 NC_012791.1 5492607 5493167 D PFAM: YaeQ family protein; KEGG: rfr:Rfer_4048 YaeQ; YaeQ family protein 5492607..5493167 Variovorax paradoxus S110 7969829 YP_002947039.1 CDS Vapar_5171 NC_012791.1 5493170 5493475 R KEGG: pol:Bpro_4663 hypothetical protein; hypothetical protein complement(5493170..5493475) Variovorax paradoxus S110 7969830 YP_002947040.1 CDS Vapar_5172 NC_012791.1 5493489 5493953 R PFAM: protein of unknown function DUF1289; KEGG: pol:Bpro_4664 protein of unknown function DUF1289; hypothetical protein complement(5493489..5493953) Variovorax paradoxus S110 7969831 YP_002947041.1 CDS Vapar_5173 NC_012791.1 5494438 5495187 D PFAM: integral membrane protein TerC; KEGG: mpt:Mpe_A0070 hypothetical protein; integral membrane protein TerC 5494438..5495187 Variovorax paradoxus S110 7969832 YP_002947042.1 CDS Vapar_5174 NC_012791.1 5495242 5495706 D KEGG: aav:Aave_4674 hypothetical protein; hypothetical protein 5495242..5495706 Variovorax paradoxus S110 7969833 YP_002947043.1 CDS Vapar_5175 NC_012791.1 5495792 5496145 D PFAM: membrane protein of unknown function; KEGG: vei:Veis_0393 membrane protein of unknown function; hypothetical protein 5495792..5496145 Variovorax paradoxus S110 7969834 YP_002947044.1 CDS Vapar_5176 NC_012791.1 5496175 5497740 R PFAM: peptidase M48 Ste24p; KEGG: vei:Veis_0392 peptidase M48, Ste24p; peptidase M48 Ste24p complement(5496175..5497740) Variovorax paradoxus S110 7969835 YP_002947045.1 CDS Vapar_5177 NC_012791.1 5497795 5498286 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: ajs:Ajs_4034 GTP cyclohydrolase subunit MoaC; molybdenum cofactor biosynthesis protein C 5497795..5498286 Variovorax paradoxus S110 7969836 YP_002947046.1 CDS Vapar_5178 NC_012791.1 5498283 5499980 R PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase; O-antigen polymerase complement(5498283..5499980) Variovorax paradoxus S110 7969837 YP_002947047.1 CDS Vapar_5179 NC_012791.1 5500067 5503723 R KEGG: neu:NE1747 type 4 fimbrial biogenesis protein PilY1; Tfp pilus assembly protein tip-associated adhesin PilY1-like protein complement(5500067..5503723) Variovorax paradoxus S110 7969838 YP_002947048.1 CDS Vapar_5180 NC_012791.1 5504045 5504554 R KEGG: net:Neut_1832 fimbrial protein pilin; fimbrial protein pilin complement(5504045..5504554) Variovorax paradoxus S110 7969839 YP_002947049.1 CDS Vapar_5181 NC_012791.1 5504560 5505111 R KEGG: reu:Reut_A0786 type IV pilus assembly protein PilX; hypothetical protein complement(5504560..5505111) Variovorax paradoxus S110 7969840 YP_002947050.1 CDS Vapar_5182 NC_012791.1 5505216 5506220 R KEGG: reu:Reut_A0785 Tfp pilus assembly protein PilW; hypothetical protein complement(5505216..5506220) Variovorax paradoxus S110 7969841 YP_002947051.1 CDS Vapar_5183 NC_012791.1 5506217 5506819 R TIGRFAM: type IV pilus modification protein PilV; KEGG: tgr:Tgr7_3228 Tfp pilus assembly protein PilV-like protein; type IV pilus modification protein PilV complement(5506217..5506819) Variovorax paradoxus S110 7969842 YP_002947052.1 CDS Vapar_5184 NC_012791.1 5506864 5507349 R KEGG: noc:Noc_2270 type-4 fimbrial pilin related signal peptide protein; hypothetical protein complement(5506864..5507349) Variovorax paradoxus S110 7969843 YP_002947053.1 CDS Vapar_5185 NC_012791.1 5508001 5508525 R KEGG: rfr:Rfer_1265 methylation; methylation protein complement(5508001..5508525) Variovorax paradoxus S110 7969844 YP_002947054.1 CDS Vapar_5186 NC_012791.1 5508729 5509532 R PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4676 cyclic-AMP phosphodiesterase; beta-lactamase domain-containing protein complement(5508729..5509532) Variovorax paradoxus S110 7969845 YP_002947055.1 CDS Vapar_5187 NC_012791.1 5509565 5511841 R PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mfa:Mfla_2129 adenylate/guanylate cyclase; adenylate/guanylate cyclase with Chase sensor complement(5509565..5511841) Variovorax paradoxus S110 7969846 YP_002947056.1 CDS Vapar_5188 NC_012791.1 5511878 5512534 R PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: rfr:Rfer_3940 FHA domain-containing protein; FHA domain containing protein complement(5511878..5512534) Variovorax paradoxus S110 7969847 YP_002947057.1 CDS Vapar_5189 NC_012791.1 5512559 5513359 R KEGG: mpt:Mpe_A0068 serine/threonine specific protein phosphatase (); PFAM: protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; protein serine/threonine phosphatase complement(5512559..5513359) Variovorax paradoxus S110 7969848 YP_002947058.1 CDS Vapar_5190 NC_012791.1 5513392 5514078 R PFAM: integral membrane protein TerC; KEGG: dac:Daci_0867 integral membrane protein TerC; integral membrane protein TerC complement(5513392..5514078) Variovorax paradoxus S110 7969849 YP_002947059.1 CDS Vapar_5191 NC_012791.1 5514181 5515074 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(5514181..5515074) Variovorax paradoxus S110 7969850 YP_002947060.1 CDS Vapar_5192 NC_012791.1 5515085 5516251 R KEGG: pol:Bpro_4682 succinyl-CoA synthetase subunit beta; TIGRFAM: succinyl-CoA synthetase, subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta complement(5515085..5516251) Variovorax paradoxus S110 7969851 YP_002947061.1 CDS Vapar_5193 NC_012791.1 5516458 5517381 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 5516458..5517381 Variovorax paradoxus S110 7969852 YP_002947062.1 CDS Vapar_5194 NC_012791.1 5517430 5517882 R PFAM: regulatory protein RecX; KEGG: pol:Bpro_4684 regulatory protein RecX; regulatory protein RecX complement(5517430..5517882) Variovorax paradoxus S110 7969853 YP_002947063.1 CDS Vapar_5195 NC_012791.1 5517910 5519037 R KEGG: dia:Dtpsy_3351 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: ATPase AAA; recA protein complement(5517910..5519037) Variovorax paradoxus S110 7969854 YP_002947064.1 CDS Vapar_5196 NC_012791.1 5519184 5519669 D PFAM: regulatory protein MarR; KEGG: dia:Dtpsy_3350 MarR family transcriptional regulator; MarR family transcriptional regulator 5519184..5519669 Variovorax paradoxus S110 7969855 YP_002947065.1 CDS Vapar_5197 NC_012791.1 5519735 5520406 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pna:Pnap_3958 two component transcriptional regulator; winged helix family two component transcriptional regulator 5519735..5520406 Variovorax paradoxus S110 7969856 YP_002947066.1 CDS Vapar_5198 NC_012791.1 5520452 5521897 D PFAM: Two-component sensor kinase domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_4637 integral membrane sensor signal transduction histidine kinase; histidine kinase 5520452..5521897 Variovorax paradoxus S110 7969857 YP_002947067.1 CDS Vapar_5199 NC_012791.1 5521919 5522107 R KEGG: aav:Aave_4630 sporulation domain-containing protein; sporulation domain-containing protein complement(5521919..5522107) Variovorax paradoxus S110 7969858 YP_002947068.1 CDS Vapar_5200 NC_012791.1 5522121 5522948 R TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dac:Daci_0882 biotin--acetyl-CoA-carboxylase ligase; biotin/acetyl-CoA-carboxylase ligase complement(5522121..5522948) Variovorax paradoxus S110 7969859 YP_002947069.1 CDS Vapar_5201 NC_012791.1 5522951 5523583 R KEGG: dac:Daci_0883 nuclear protein SET; PFAM: nuclear protein SET; SMART: nuclear protein SET; histone-lysine N-methyltransferase complement(5522951..5523583) Variovorax paradoxus S110 7969860 YP_002947070.1 CDS Vapar_5202 NC_012791.1 5523766 5526708 D decatenates replicating daughter chromosomes; DNA topoisomerase III 5523766..5526708 Variovorax paradoxus S110 7969861 YP_002947071.1 CDS Vapar_5203 NC_012791.1 5526705 5527703 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_2466 hypothetical protein; hypothetical protein 5526705..5527703 Variovorax paradoxus S110 7969862 YP_002947072.1 CDS Vapar_5204 NC_012791.1 5527723 5528652 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_3347 LysR family transcriptional regulator; LysR family transcriptional regulator complement(5527723..5528652) Variovorax paradoxus S110 7969863 YP_002947073.1 CDS Vapar_5205 NC_012791.1 5528765 5529730 D PFAM: conserved hypothetical protein; KEGG: dia:Dtpsy_3346 hypothetical protein; hypothetical protein 5528765..5529730 Variovorax paradoxus S110 7969864 YP_002947074.1 CDS Vapar_5206 NC_012791.1 5529743 5530615 D PFAM: N-formylglutamate amidohydrolase; KEGG: dia:Dtpsy_3345 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 5529743..5530615 Variovorax paradoxus S110 7969865 YP_002947075.1 CDS Vapar_5207 NC_012791.1 5530758 5530874 D hypothetical protein 5530758..5530874 Variovorax paradoxus S110 7969866 YP_002947076.1 CDS Vapar_5208 NC_012791.1 5530888 5531775 R PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: aav:Aave_4597 peptidase C26; peptidase C26 complement(5530888..5531775) Variovorax paradoxus S110 7969867 YP_002947077.1 CDS Vapar_5209 NC_012791.1 5531904 5532959 D PFAM: xylose isomerase; AP endonuclease 2 domain protein; KEGG: nar:Saro_0453 xylose isomerase-like TIM barrel; xylose isomerase 5531904..5532959 Variovorax paradoxus S110 7969868 YP_002947078.1 CDS Vapar_5210 NC_012791.1 5533348 5533608 D KEGG: pol:Bpro_1355 hypothetical protein; hypothetical protein 5533348..5533608 Variovorax paradoxus S110 7969869 YP_002947079.1 CDS Vapar_5211 NC_012791.1 5533670 5533942 D TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; KEGG: aav:Aave_2954 translation initiation factor 1; translation initiation factor IF-1 5533670..5533942 Variovorax paradoxus S110 7969870 YP_002947080.1 CDS Vapar_5212 NC_012791.1 5534031 5535461 D exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 5534031..5535461 Variovorax paradoxus S110 7969871 YP_002947081.1 CDS Vapar_5213 NC_012791.1 5535561 5535731 D KEGG: aav:Aave_0776 hypothetical protein; hypothetical protein 5535561..5535731 Variovorax paradoxus S110 7969872 YP_002947082.1 CDS Vapar_5214 NC_012791.1 5535818 5536132 D KEGG: aav:Aave_1245 hypothetical protein; hypothetical protein 5535818..5536132 Variovorax paradoxus S110 7969873 YP_002947083.1 CDS Vapar_5215 NC_012791.1 5536153 5537076 R PFAM: fatty acid desaturase; KEGG: pzu:PHZ_c0530 fatty acid desaturase; fatty acid desaturase complement(5536153..5537076) Variovorax paradoxus S110 7969874 YP_002947084.1 CDS Vapar_5216 NC_012791.1 5537130 5537834 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mno:Mnod_8055 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(5537130..5537834) Variovorax paradoxus S110 7969875 YP_002947085.1 CDS Vapar_5217 NC_012791.1 5537831 5539120 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; HI0933 family protein; KEGG: hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(5537831..5539120) Variovorax paradoxus S110 7969876 YP_002947086.1 CDS Vapar_5218 NC_012791.1 5539117 5539365 R KEGG: pap:PSPA7_4124 hypothetical protein; hypothetical protein complement(5539117..5539365) Variovorax paradoxus S110 7969877 YP_002947087.1 CDS Vapar_5219 NC_012791.1 5539362 5540468 R PFAM: FAD dependent oxidoreductase; KEGG: pae:PA1267 hypothetical protein; FAD dependent oxidoreductase complement(5539362..5540468) Variovorax paradoxus S110 7969878 YP_002947088.1 CDS Vapar_5220 NC_012791.1 5540480 5541418 R PFAM: proline racemase; KEGG: vei:Veis_1044 proline racemase; 4-hydroxyproline epimerase complement(5540480..5541418) Variovorax paradoxus S110 7969879 YP_002947089.1 CDS Vapar_5221 NC_012791.1 5541429 5542568 R PFAM: extracellular ligand-binding receptor; KEGG: rfr:Rfer_2810 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(5541429..5542568) Variovorax paradoxus S110 7969880 YP_002947090.1 CDS Vapar_5222 NC_012791.1 5542614 5543528 R PFAM: dihydrodipicolinate synthetase; KEGG: vei:Veis_1046 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(5542614..5543528) Variovorax paradoxus S110 7969881 YP_002947091.1 CDS Vapar_5223 NC_012791.1 5543967 5544977 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_0942 hypothetical protein; hypothetical protein complement(5543967..5544977) Variovorax paradoxus S110 7969882 YP_002947092.1 CDS Vapar_5224 NC_012791.1 5544996 5546201 R KEGG: dac:Daci_0943 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(5544996..5546201) Variovorax paradoxus S110 7969883 YP_002947093.1 CDS Vapar_5225 NC_012791.1 5546286 5547569 R PFAM: aminotransferase class-III; KEGG: pol:Bpro_0414 aminotransferase; class III aminotransferase complement(5546286..5547569) Variovorax paradoxus S110 7969884 YP_002947094.1 CDS Vapar_5226 NC_012791.1 5547579 5548634 R PFAM: aminoglycoside phosphotransferase; KEGG: pol:Bpro_0415 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(5547579..5548634) Variovorax paradoxus S110 7969885 YP_002947095.1 CDS Vapar_5227 NC_012791.1 5548631 5549659 R PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_0416 histone deacetylase superfamily; histone deacetylase complement(5548631..5549659) Variovorax paradoxus S110 7969886 YP_002947096.1 CDS Vapar_5228 NC_012791.1 5549678 5550466 R PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_0417 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(5549678..5550466) Variovorax paradoxus S110 7969887 YP_002947097.1 CDS Vapar_5229 NC_012791.1 5550453 5551379 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_0418 protein of unknown function DUF6, transmembrane; hypothetical protein complement(5550453..5551379) Variovorax paradoxus S110 7969888 YP_002947098.1 CDS Vapar_5230 NC_012791.1 5551429 5552799 R PFAM: aminotransferase class-III; KEGG: pol:Bpro_0421 aminotransferase; class III aminotransferase complement(5551429..5552799) Variovorax paradoxus S110 7969889 YP_002947099.1 CDS Vapar_5231 NC_012791.1 5552830 5553792 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pol:Bpro_0422 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(5552830..5553792) Variovorax paradoxus S110 7969890 YP_002947100.1 CDS Vapar_5232 NC_012791.1 5553792 5555450 R PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: pol:Bpro_0423 ABC transporter; ABC transporter complement(5553792..5555450) Variovorax paradoxus S110 7969891 YP_002947101.1 CDS Vapar_5233 NC_012791.1 5555447 5556298 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0424 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(5555447..5556298) Variovorax paradoxus S110 7969892 YP_002947102.1 CDS Vapar_5234 NC_012791.1 5556295 5557266 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0425 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(5556295..5557266) Variovorax paradoxus S110 7969893 YP_002947103.1 CDS Vapar_5235 NC_012791.1 5557307 5558875 R PFAM: extracellular solute-binding protein family 5; KEGG: pol:Bpro_0426 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein complement(5557307..5558875) Variovorax paradoxus S110 7969894 YP_002947104.1 CDS Vapar_5236 NC_012791.1 5558970 5559818 R PFAM: class II aldolase/adducin family protein; KEGG: pol:Bpro_0427 class II aldolase/adducin-like; class II aldolase/adducin family protein complement(5558970..5559818) Variovorax paradoxus S110 7969895 YP_002947105.1 CDS Vapar_5237 NC_012791.1 5560072 5560935 R PFAM: pirin; KEGG: psp:PSPPH_2192 pirin; pirin complement(5560072..5560935) Variovorax paradoxus S110 7969896 YP_002947106.1 CDS Vapar_5238 NC_012791.1 5560972 5561358 R PFAM: DoxX family protein; KEGG: rec:RHECIAT_CH0000673 hypothetical protein; DoxX family protein complement(5560972..5561358) Variovorax paradoxus S110 7969897 YP_002947107.1 CDS Vapar_5239 NC_012791.1 5561444 5562376 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cvi:CV_3254 transcriptional regulator; LysR family transcriptional regulator 5561444..5562376 Variovorax paradoxus S110 7969898 YP_002947108.1 CDS Vapar_5240 NC_012791.1 5562384 5563067 R PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: mlo:mll7354 transcriptonal regulator; GntR family transcriptional regulator complement(5562384..5563067) Variovorax paradoxus S110 7969899 YP_002947109.1 CDS Vapar_5241 NC_012791.1 5563105 5563773 R TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2969 ABC transporter permease protein; polar amino acid ABC transporter inner membrane protein complement(5563105..5563773) Variovorax paradoxus S110 7969900 YP_002947110.1 CDS Vapar_5242 NC_012791.1 5563776 5564456 R TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2968 ABC transporter permease protein; polar amino acid ABC transporter inner membrane protein complement(5563776..5564456) Variovorax paradoxus S110 7969901 YP_002947111.1 CDS Vapar_5243 NC_012791.1 5564490 5565341 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA2966 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(5564490..5565341) Variovorax paradoxus S110 7969902 YP_002947112.1 CDS Vapar_5244 NC_012791.1 5565397 5566350 R PFAM: aminotransferase class IV; KEGG: eca:ECA2971 branched-chain amino acid aminotransferase; class IV aminotransferase complement(5565397..5566350) Variovorax paradoxus S110 7969903 YP_002947113.1 CDS Vapar_5245 NC_012791.1 5566370 5567155 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ara:Arad_7346 amino acid ABC transporter; ABC transporter complement(5566370..5567155) Variovorax paradoxus S110 7969904 YP_002947114.1 CDS Vapar_5246 NC_012791.1 5567294 5567770 D KEGG: pol:Bpro_4719 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 5567294..5567770 Variovorax paradoxus S110 7971945 YP_002947115.1 CDS Vapar_5247 NC_012791.1 5567798 5569417 R PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: aav:Aave_4030 adenylate cyclase; CHAD domain containing protein complement(5567798..5569417) Variovorax paradoxus S110 7972680 YP_002947116.1 CDS Vapar_5248 NC_012791.1 5569490 5570863 D PFAM: Amidase; KEGG: rpb:RPB_1679 amidase; Amidase 5569490..5570863 Variovorax paradoxus S110 7972681 YP_002947117.1 CDS Vapar_5249 NC_012791.1 5570972 5571394 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bpt:Bpet2943 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 5570972..5571394 Variovorax paradoxus S110 7972682 YP_002947118.1 CDS Vapar_5250 NC_012791.1 5571472 5572644 D PFAM: pirin; KEGG: pol:Bpro_4775 pirin-like; pirin 5571472..5572644 Variovorax paradoxus S110 7972683 YP_002947119.1 CDS Vapar_5251 NC_012791.1 5572664 5572954 R PFAM: YCII-related; KEGG: cvi:CV_4150 hypothetical protein; YCII-like protein complement(5572664..5572954) Variovorax paradoxus S110 7972684 YP_002947120.1 CDS Vapar_5252 NC_012791.1 5573102 5574172 D PFAM: peptidase M4 thermolysin; peptidase M4 thermolysin; KEGG: bpt:Bpet2479 metalloprotease; peptidase M4 thermolysin 5573102..5574172 Variovorax paradoxus S110 7972685 YP_002947121.1 CDS Vapar_5253 NC_012791.1 5574169 5574510 D KEGG: bpt:Bpet2478 hypothetical protein; hypothetical protein 5574169..5574510 Variovorax paradoxus S110 7972686 YP_002947122.1 CDS Vapar_5254 NC_012791.1 5574532 5575860 R TIGRFAM: Mn2+/Fe2+ transporter NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: rso:RS00399 manganese transport protein MntH; manganese transport protein MntH complement(5574532..5575860) Variovorax paradoxus S110 7972687 YP_002947123.1 CDS Vapar_5255 NC_012791.1 5575963 5576271 D PFAM: antibiotic biosynthesis monooxygenase; KEGG: met:M446_1296 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 5575963..5576271 Variovorax paradoxus S110 7972688 YP_002947124.1 CDS Vapar_5256 NC_012791.1 5576348 5576944 D KEGG: cti:RALTA_A1645 hypothetical protein; hypothetical protein 5576348..5576944 Variovorax paradoxus S110 7972689 YP_002947125.1 CDS Vapar_5257 NC_012791.1 5576973 5577572 D KEGG: cti:RALTA_A1646 lipoprotein; lipoprotein 5576973..5577572 Variovorax paradoxus S110 7972690 YP_002947126.1 CDS Vapar_5258 NC_012791.1 5577643 5578644 R KEGG: xac:XAC3352 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(5577643..5578644) Variovorax paradoxus S110 7972691 YP_002947127.1 CDS Vapar_5259 NC_012791.1 5578708 5580813 R TIGRFAM: transketolase; PFAM: transketolase central region; transketolase; KEGG: pna:Pnap_4056 transketolase; transketolase complement(5578708..5580813) Variovorax paradoxus S110 7972692 YP_002947128.1 CDS Vapar_5260 NC_012791.1 5580950 5581330 D TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: aav:Aave_4584 S-adenosylmethionine decarboxylase related protein; S-adenosylmethionine decarboxylase proenzyme 5580950..5581330 Variovorax paradoxus S110 7972693 YP_002947129.1 CDS Vapar_5261 NC_012791.1 5581357 5582067 D PFAM: nucleotidyl transferase; KEGG: pna:Pnap_4057 nucleotidyl transferase; nucleotidyl transferase 5581357..5582067 Variovorax paradoxus S110 7972694 YP_002947130.1 CDS Vapar_5262 NC_012791.1 5582064 5583458 D PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: dia:Dtpsy_3306 peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; peptidase M24 5582064..5583458 Variovorax paradoxus S110 7972695 YP_002947131.1 CDS Vapar_5263 NC_012791.1 5583400 5584374 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpt:Bpet3364 LysR family transcriptional regulator; LysR family transcriptional regulator complement(5583400..5584374) Variovorax paradoxus S110 7972696 YP_002947132.1 CDS Vapar_5264 NC_012791.1 5584424 5585782 R KEGG: reu:Reut_B3732 hypothetical protein; hypothetical protein complement(5584424..5585782) Variovorax paradoxus S110 7972697 YP_002947133.1 CDS Vapar_5265 NC_012791.1 5585870 5587501 R KEGG: aav:Aave_4735 amine oxidase; amine oxidase complement(5585870..5587501) Variovorax paradoxus S110 7972698 YP_002947134.1 CDS Vapar_5266 NC_012791.1 5587776 5589320 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(5587776..5589320) Variovorax paradoxus S110 7972699 YP_002947135.1 CDS Vapar_5267 NC_012791.1 5589335 5589553 R PFAM: protein of unknown function DUF350; KEGG: mpt:Mpe_A0248 hypothetical protein; hypothetical protein complement(5589335..5589553) Variovorax paradoxus S110 7972700 YP_002947136.1 CDS Vapar_5268 NC_012791.1 5589616 5591097 R KEGG: dia:Dtpsy_3448 transmembrane protein; transmembrane protein complement(5589616..5591097) Variovorax paradoxus S110 7972701 YP_002947137.1 CDS Vapar_5269 NC_012791.1 5591107 5592156 R KEGG: dia:Dtpsy_3449 band 7 protein; hypothetical protein complement(5591107..5592156) Variovorax paradoxus S110 7972702 YP_002947138.1 CDS Vapar_5270 NC_012791.1 5592321 5594663 D NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme 5592321..5594663 Variovorax paradoxus S110 7972703 YP_002947139.1 CDS Vapar_5271 NC_012791.1 5594844 5595254 D PFAM: guanine-specific ribonuclease N1 and T1; KEGG: mpt:Mpe_A0206 guanyl-specific ribonuclease Sa-like protein; guanine-specific ribonuclease N1 and T1 5594844..5595254 Variovorax paradoxus S110 7972704 YP_002947140.1 CDS Vapar_5272 NC_012791.1 5595251 5595730 D PFAM: Barstar (barnase inhibitor); KEGG: dia:Dtpsy_3467 barstar (barnase inhibitor); Barstar (barnase inhibitor) 5595251..5595730 Variovorax paradoxus S110 7972705 YP_002947141.1 CDS ksgA NC_012791.1 5596090 5596857 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(5596090..5596857) Variovorax paradoxus S110 7972706 YP_002947142.1 CDS Vapar_5274 NC_012791.1 5596857 5598266 R PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: aav:Aave_4763 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain-containing protein complement(5596857..5598266) Variovorax paradoxus S110 7972707 YP_002947143.1 CDS Vapar_5275 NC_012791.1 5598284 5600866 R PFAM: organic solvent tolerance protein; OstA family protein; KEGG: rfr:Rfer_0098 organic solvent tolerance protein; organic solvent tolerance protein complement(5598284..5600866) Variovorax paradoxus S110 7972708 YP_002947144.1 CDS Vapar_5276 NC_012791.1 5601101 5602276 D PFAM: aminoglycoside phosphotransferase; KEGG: rfr:Rfer_0099 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 5601101..5602276 Variovorax paradoxus S110 7972709 YP_002947145.1 CDS Vapar_5277 NC_012791.1 5602285 5603019 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5602285..5603019 Variovorax paradoxus S110 7972710 YP_002947146.1 CDS Vapar_5278 NC_012791.1 5603081 5604445 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rme:Rmet_3696 peptidase M20; peptidase M20 5603081..5604445 Variovorax paradoxus S110 7972711 YP_002947147.1 CDS Vapar_5279 NC_012791.1 5604546 5605010 D PFAM: protein of unknown function DUF937; KEGG: bcs:BCAN_A0438 hypothetical protein; hypothetical protein 5604546..5605010 Variovorax paradoxus S110 7972712 YP_002947148.1 CDS Vapar_5280 NC_012791.1 5605153 5606331 D PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_0186 major facilitator transporter; major facilitator superfamily protein 5605153..5606331 Variovorax paradoxus S110 7972713 YP_002947149.1 CDS Vapar_5281 NC_012791.1 5606344 5607210 R PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0402 alpha/beta hydrolase; alpha/beta hydrolase fold protein complement(5606344..5607210) Variovorax paradoxus S110 7972714 YP_002947150.1 CDS Vapar_5282 NC_012791.1 5607207 5608718 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_4868 peptidase M20; peptidase M20 complement(5607207..5608718) Variovorax paradoxus S110 7972715 YP_002947151.1 CDS Vapar_5283 NC_012791.1 5608807 5609592 D PFAM: protein of unknown function DUF72; KEGG: pol:Bpro_4869 protein of unknown function DUF72; hypothetical protein 5608807..5609592 Variovorax paradoxus S110 7972716 YP_002947152.1 CDS Vapar_5284 NC_012791.1 5609606 5610121 R PFAM: protein of unknown function DUF583; KEGG: pol:Bpro_0430 protein of unknown function DUF583; hypothetical protein complement(5609606..5610121) Variovorax paradoxus S110 7972717 YP_002947153.1 CDS Vapar_5285 NC_012791.1 5610257 5611189 D PFAM: ion transport protein; ion transport 2 domain protein; KEGG: lch:Lcho_1166 ion transport protein; ion transport protein 5610257..5611189 Variovorax paradoxus S110 7972718 YP_002947154.1 CDS Vapar_5286 NC_012791.1 5611134 5611724 R PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: aav:Aave_2434 hypothetical protein; hypothetical protein complement(5611134..5611724) Variovorax paradoxus S110 7972719 YP_002947155.1 CDS Vapar_5287 NC_012791.1 5611762 5612349 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: methionine biosynthesis MetW protein; methyltransferase type 11; methyltransferase type 12; KEGG: dia:Dtpsy_3482 methionine biosynthesis protein MetW; methionine biosynthesis protein MetW complement(5611762..5612349) Variovorax paradoxus S110 7972720 YP_002947156.1 CDS Vapar_5288 NC_012791.1 5612346 5613521 R KEGG: ajs:Ajs_4125 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine O-acetyltransferase complement(5612346..5613521) Variovorax paradoxus S110 7972721 YP_002947157.1 CDS Vapar_5289 NC_012791.1 5613656 5614219 R PFAM: protein of unknown function UPF0016; KEGG: predicted membrane protein; hypothetical protein complement(5613656..5614219) Variovorax paradoxus S110 7972722 YP_002947158.1 CDS Vapar_5290 NC_012791.1 5614673 5615218 D PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: vei:Veis_0150 RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 5614673..5615218 Variovorax paradoxus S110 7972723 YP_002947159.1 CDS Vapar_5291 NC_012791.1 5615300 5616082 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_4782 short chain dehydrogenase; short chain dehydrogenase complement(5615300..5616082) Variovorax paradoxus S110 7972724 YP_002947160.1 CDS Vapar_5292 NC_012791.1 5616091 5616726 R PFAM: protein of unknown function DUF1239; KEGG: aav:Aave_4783 hypothetical protein; hypothetical protein complement(5616091..5616726) Variovorax paradoxus S110 7972725 YP_002947161.1 CDS Vapar_5293 NC_012791.1 5616723 5617271 R TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: rfr:Rfer_4236 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(5616723..5617271) Variovorax paradoxus S110 7972726 YP_002947162.1 CDS Vapar_5294 NC_012791.1 5617271 5618269 R KEGG: rfr:Rfer_4237 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein; KpsF/GutQ family protein complement(5617271..5618269) Variovorax paradoxus S110 7972727 YP_002947163.1 CDS Vapar_5295 NC_012791.1 5618357 5620342 D PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: aav:Aave_4786 potassium efflux system protein; sodium/hydrogen exchanger 5618357..5620342 Variovorax paradoxus S110 7972728 YP_002947164.1 CDS Vapar_5296 NC_012791.1 5620365 5621333 R KEGG: GH10507 gene product from transcript GH10507-RA; hypothetical protein complement(5620365..5621333) Variovorax paradoxus S110 7972729 YP_002947165.1 CDS Vapar_5297 NC_012791.1 5621428 5621892 R PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: dia:Dtpsy_3494 cyclic nucleotide-binding protein; Crp/Fnr family transcriptional regulator complement(5621428..5621892) Variovorax paradoxus S110 7972730 YP_002947166.1 CDS trmE NC_012791.1 5621984 5623399 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(5621984..5623399) Variovorax paradoxus S110 7972731 YP_002947167.1 CDS Vapar_5299 NC_012791.1 5623469 5625166 R PFAM: 60 kDa inner membrane insertion protein; KEGG: dia:Dtpsy_3542 YidC translocase/secretase; 60 kDa inner membrane insertion protein complement(5623469..5625166) Variovorax paradoxus S110 7972732 YP_002947168.1 CDS Vapar_5300 NC_012791.1 5625163 5625450 R PFAM: protein of unknown function DUF37; KEGG: dac:Daci_6057 hypothetical protein; hypothetical protein complement(5625163..5625450) Variovorax paradoxus S110 7972733 YP_002947169.1 CDS Vapar_5301 NC_012791.1 5625447 5625866 R KEGG: vei:Veis_5014 hypothetical protein; hypothetical protein complement(5625447..5625866) Variovorax paradoxus S110 7972734 YP_002947170.1 CDS rpmH NC_012791.1 5625968 5626102 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(5625968..5626102) Variovorax paradoxus S110 7972735 YP_002947171.1 CDS Vapar_5303 NC_012792.1 3 926 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dac:Daci_3915 hypothetical protein; hypothetical protein complement(3..926) Variovorax paradoxus S110 7975707 YP_002947172.1 CDS Vapar_5304 NC_012792.1 1034 1903 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_3916 LysR family transcriptional regulator; LysR family transcriptional regulator 1034..1903 Variovorax paradoxus S110 7975591 YP_002947173.1 CDS Vapar_5305 NC_012792.1 1922 2476 R PFAM: flavin reductase domain protein FMN-binding; KEGG: jan:Jann_2957 flavin reductase-like, FMN-binding; flavin reductase domain protein FMN-binding complement(1922..2476) Variovorax paradoxus S110 7975592 YP_002947174.1 CDS Vapar_5306 NC_012792.1 2491 3756 R PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: scl:sce4164 hypothetical protein; Acyl-CoA dehydrogenase type 2 domain protein complement(2491..3756) Variovorax paradoxus S110 7975593 YP_002947175.1 CDS Vapar_5307 NC_012792.1 3892 4428 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pol:Bpro_2058 transcriptional regulator, MarR family; transcriptional regulator, MarR family 3892..4428 Variovorax paradoxus S110 7975594 YP_002947176.1 CDS Vapar_5308 NC_012792.1 4453 5406 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B0257 LysR family transcriptional regulator; LysR family transcriptional regulator 4453..5406 Variovorax paradoxus S110 7975595 YP_002947177.1 CDS Vapar_5309 NC_012792.1 5407 6468 R PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(5407..6468) Variovorax paradoxus S110 7975596 YP_002947178.1 CDS Vapar_5310 NC_012792.1 6474 7343 R PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bpy:Bphyt_4110 hydroxyquinol 1,2-dioxygenase; Hydroxyquinol 1,2-dioxygenase complement(6474..7343) Variovorax paradoxus S110 7975597 YP_002947179.1 CDS Vapar_5311 NC_012792.1 7378 8355 R PFAM: amidohydrolase 2; KEGG: atc:AGR_C_4595 hypothetical protein; amidohydrolase 2 complement(7378..8355) Variovorax paradoxus S110 7975598 YP_002947180.1 CDS Vapar_5312 NC_012792.1 8621 9997 D PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: reh:H16_A1629 MFS transporter, AAHS family; major facilitator superfamily MFS_1 8621..9997 Variovorax paradoxus S110 7975599 YP_002947181.1 CDS Vapar_5313 NC_012792.1 10044 10319 R hypothetical protein complement(10044..10319) Variovorax paradoxus S110 7975600 YP_002947182.1 CDS Vapar_5314 NC_012792.1 10828 13662 D KEGG: dac:Daci_2082 hypothetical protein; Putative membrane protein involved in toxin uptake 10828..13662 Variovorax paradoxus S110 7975601 YP_002947183.1 CDS Vapar_5315 NC_012792.1 13771 14154 R KEGG: pol:Bpro_1724 hypothetical protein; hypothetical protein complement(13771..14154) Variovorax paradoxus S110 7975602 YP_002947184.1 CDS Vapar_5316 NC_012792.1 14305 15024 R PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pna:Pnap_2075 GntR domain-containing protein; GntR family transcriptional regulator complement(14305..15024) Variovorax paradoxus S110 7975603 YP_002947185.1 CDS Vapar_5317 NC_012792.1 15199 16074 D PFAM: amidohydrolase 2; KEGG: bph:Bphy_4296 amidohydrolase 2; amidohydrolase 2 15199..16074 Variovorax paradoxus S110 7975604 YP_002947186.1 CDS Vapar_5318 NC_012792.1 16081 17607 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_B0624 ABC sugar transporter, ATPase subunit; ABC transporter 16081..17607 Variovorax paradoxus S110 7975605 YP_002947187.1 CDS Vapar_5319 NC_012792.1 17625 18653 D PFAM: inner-membrane translocator; KEGG: vei:Veis_1087 inner-membrane translocator; inner-membrane translocator 17625..18653 Variovorax paradoxus S110 7975606 YP_002947188.1 CDS Vapar_5320 NC_012792.1 18683 19630 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bcj:BCAM2280 putative solute-binding component of ABC transporter; periplasmic binding protein/LacI transcriptional regulator 18683..19630 Variovorax paradoxus S110 7975607 YP_002947189.1 CDS Vapar_5321 NC_012792.1 19652 20932 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bac:BamMC406_4969 mandelate racemase/muconate lactonizing protein; Mandelate racemase/muconate lactonizing protein 19652..20932 Variovorax paradoxus S110 7975608 YP_002947190.1 CDS Vapar_5322 NC_012792.1 20962 21738 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bte:BTH_II1602 short chain dehydrogenase; short chain dehydrogenase 20962..21738 Variovorax paradoxus S110 7975609 YP_002947191.1 CDS Vapar_5323 NC_012792.1 21787 22116 D PFAM: protein of unknown function DUF718; KEGG: bph:Bphy_6338 hypothetical protein; hypothetical protein 21787..22116 Variovorax paradoxus S110 7975610 YP_002947192.1 CDS Vapar_5324 NC_012792.1 22362 23636 D KEGG: Os03g0103300; hypothetical protein; hypothetical protein 22362..23636 Variovorax paradoxus S110 7975611 YP_002947193.1 CDS Vapar_5325 NC_012792.1 23699 24490 R PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: atc:AGR_C_2595 hypothetical protein; GntR family transcriptional regulator complement(23699..24490) Variovorax paradoxus S110 7975612 YP_002947194.1 CDS Vapar_5326 NC_012792.1 24710 25480 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ara:Arad_8618 gluconate 5-dehydrogenase protein; short-chain dehydrogenase/reductase SDR 24710..25480 Variovorax paradoxus S110 7975613 YP_002947195.1 CDS Vapar_5327 NC_012792.1 25522 26490 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B1814 probable extra-cytoplasmic solute receptor; hypothetical protein 25522..26490 Variovorax paradoxus S110 7975614 YP_002947196.1 CDS Vapar_5328 NC_012792.1 26548 27795 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bpy:Bphyt_2214 mandelate racemase/muconate lactonizing protein; Mandelate racemase/muconate lactonizing protein 26548..27795 Variovorax paradoxus S110 7975789 YP_002947197.1 CDS Vapar_5329 NC_012792.1 27804 28952 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: xop:PXO_00121 galactonate dehydratase; galactonate dehydratase 27804..28952 Variovorax paradoxus S110 7975790 YP_002947198.1 CDS Vapar_5330 NC_012792.1 29001 30029 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4499 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter, DctP subunit 29001..30029 Variovorax paradoxus S110 7975791 YP_002947199.1 CDS Vapar_5331 NC_012792.1 30064 30645 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sme:SMa0249 TRAP-type small permease component; Tripartite ATP-independent periplasmic transporter DctQ component 30064..30645 Variovorax paradoxus S110 7975792 YP_002947200.1 CDS Vapar_5332 NC_012792.1 30642 31922 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: atc:AGR_C_4974 hypothetical protein; TRAP dicarboxylate transporter, DctM subunit 30642..31922 Variovorax paradoxus S110 7975793 YP_002947201.1 CDS Vapar_5333 NC_012792.1 31945 32982 D PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rso:RSp0948 putative L-idonate 5-dehydrogenase oxidoreductase protein; Alcohol dehydrogenase GroES domain protein 31945..32982 Variovorax paradoxus S110 7975794 YP_002947202.1 CDS aceE NC_012792.1 33261 35933 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 33261..35933 Variovorax paradoxus S110 7975795 YP_002947203.1 CDS Vapar_5335 NC_012792.1 35942 37222 D PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: bja:blr3721 dihydrolipoamide S-acetyltransferase; catalytic domain of components of various dehydrogenase complexes 35942..37222 Variovorax paradoxus S110 7975796 YP_002947204.1 CDS Vapar_5336 NC_012792.1 37236 39008 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; biotin/lipoyl attachment domain-containing protein; KEGG: bja:blr3722 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 37236..39008 Variovorax paradoxus S110 7975797 YP_002947205.1 CDS Vapar_5337 NC_012792.1 39018 39812 D PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: aeh:Mlg_2781 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 39018..39812 Variovorax paradoxus S110 7975798 YP_002947206.1 CDS Vapar_5338 NC_012792.1 39830 42115 D NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme 39830..42115 Variovorax paradoxus S110 7975799 YP_002947207.1 CDS Vapar_5339 NC_012792.1 42129 43526 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 42129..43526 Variovorax paradoxus S110 7975800 YP_002947208.1 CDS Vapar_5340 NC_012792.1 43559 44893 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reh:PHG414 putative NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 43559..44893 Variovorax paradoxus S110 7975801 YP_002947209.1 CDS Vapar_5341 NC_012792.1 44941 46125 D KEGG: mpt:Mpe_A1869 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 44941..46125 Variovorax paradoxus S110 7975802 YP_002947210.1 CDS Vapar_5342 NC_012792.1 46165 46920 D TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azo:azo1022 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase 46165..46920 Variovorax paradoxus S110 7975803 YP_002947211.1 CDS Vapar_5343 NC_012792.1 46931 47605 D KEGG: mpt:Mpe_A1304 hypothetical protein; hypothetical protein 46931..47605 Variovorax paradoxus S110 7975804 YP_002947212.1 CDS Vapar_5344 NC_012792.1 47640 49475 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: lch:Lcho_4339 histidine kinase; histidine kinase 47640..49475 Variovorax paradoxus S110 7975805 YP_002947213.1 CDS Vapar_5345 NC_012792.1 49472 50839 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: lch:Lcho_4338 two component, sigma54 specific, fis family transcriptional regulator; two component, sigma54 specific, transcriptional regulator, Fis family 49472..50839 Variovorax paradoxus S110 7975806 YP_002947214.1 CDS Vapar_5346 NC_012792.1 50849 52066 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reu:Reut_B4722 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(50849..52066) Variovorax paradoxus S110 7975807 YP_002947215.1 CDS Vapar_5347 NC_012792.1 52071 52388 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0985 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain protein complement(52071..52388) Variovorax paradoxus S110 7975808 YP_002947216.1 CDS Vapar_5348 NC_012792.1 52397 52867 R PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: pol:Bpro_0984 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase beta subunit complement(52397..52867) Variovorax paradoxus S110 7975809 YP_002947217.1 CDS Vapar_5349 NC_012792.1 52869 54134 R PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: pol:Bpro_0983 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain protein complement(52869..54134) Variovorax paradoxus S110 7975810 YP_002947218.1 CDS Vapar_5350 NC_012792.1 54263 55177 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_0979 transcriptional regulator, LysR family; LysR family transcriptional regulator 54263..55177 Variovorax paradoxus S110 7975811 YP_002947219.1 CDS Vapar_5351 NC_012792.1 55264 55974 D PFAM: ChaC family protein; KEGG: rru:Rru_A2776 ChaC-like protein; ChaC family protein 55264..55974 Variovorax paradoxus S110 7975812 YP_002947220.1 CDS Vapar_5352 NC_012792.1 55991 57631 R PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_C6065 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(55991..57631) Variovorax paradoxus S110 7975813 YP_002947221.1 CDS Vapar_5353 NC_012792.1 57661 58251 R PFAM: DSBA oxidoreductase; KEGG: reu:Reut_B4723 DsbA oxidoreductase; DSBA oxidoreductase complement(57661..58251) Variovorax paradoxus S110 7975814 YP_002947222.1 CDS Vapar_5354 NC_012792.1 58410 59150 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_B4725 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 58410..59150 Variovorax paradoxus S110 7975815 YP_002947223.1 CDS Vapar_5355 NC_012792.1 59161 60147 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: reu:Reut_C6053 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase NPD 59161..60147 Variovorax paradoxus S110 7975816 YP_002947224.1 CDS Vapar_5356 NC_012792.1 60182 61960 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reu:Reut_C6066 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region; acyl-CoA dehydrogenase domain protein complement(60182..61960) Variovorax paradoxus S110 7975817 YP_002947225.1 CDS Vapar_5357 NC_012792.1 61977 63161 R KEGG: reu:Reut_C6062 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(61977..63161) Variovorax paradoxus S110 7975818 YP_002947226.1 CDS Vapar_5358 NC_012792.1 63473 64063 D PFAM: regulatory protein TetR; KEGG: reu:Reut_C6064 TetR family transcriptional regulator; TetR family transcriptional regulator 63473..64063 Variovorax paradoxus S110 7975819 YP_002947227.1 CDS Vapar_5359 NC_012792.1 64112 64582 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rfr:Rfer_1697 MarR family transcriptional regulator; transcriptional regulator, MarR family 64112..64582 Variovorax paradoxus S110 7975820 YP_002947228.1 CDS Vapar_5360 NC_012792.1 64592 66061 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bcm:Bcenmc03_6141 RND efflux system outer membrane lipoprotein; RND efflux system, outer membrane lipoprotein, NodT family complement(64592..66061) Variovorax paradoxus S110 7975821 YP_002947229.1 CDS Vapar_5361 NC_012792.1 66166 66783 D PFAM: regulatory protein TetR; KEGG: pol:Bpro_3444 transcriptional regulator, TetR family; TetR family transcriptional regulator 66166..66783 Variovorax paradoxus S110 7975822 YP_002947230.1 CDS Vapar_5362 NC_012792.1 66868 67983 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSc3206 transport lipoprotein; efflux transporter, RND family, MFP subunit 66868..67983 Variovorax paradoxus S110 7975823 YP_002947231.1 CDS Vapar_5363 NC_012792.1 67980 71057 D PFAM: acriflavin resistance protein; KEGG: rso:RSc3205 transmembrane drug efflux protein; acriflavin resistance protein 67980..71057 Variovorax paradoxus S110 7975824 YP_002947232.1 CDS Vapar_5364 NC_012792.1 71099 71911 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: pol:Bpro_3447 short chain dehydrogenase; short chain dehydrogenase 71099..71911 Variovorax paradoxus S110 7975825 YP_002947233.1 CDS Vapar_5365 NC_012792.1 71946 72857 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mms:mma_1855 LysR family transcriptional regulator; LysR family transcriptional regulator 71946..72857 Variovorax paradoxus S110 7975826 YP_002947234.1 CDS Vapar_5366 NC_012792.1 72914 73144 D PFAM: SpoVT/AbrB domain protein; KEGG: eba:ebA7217 related to putative virulence-associated proteins and nitrogen regulatory protein NtrP; SpoVT/AbrB domain protein 72914..73144 Variovorax paradoxus S110 7975827 YP_002947235.1 CDS Vapar_5367 NC_012792.1 73233 75200 R TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: mpt:Mpe_A1385 acetyl-coenzyme A synthetase; acetate/CoA ligase complement(73233..75200) Variovorax paradoxus S110 7975828 YP_002947236.1 CDS Vapar_5368 NC_012792.1 75252 76160 R KEGG: dac:Daci_1762 (acyl-carrier protein) S-malonyltransferase; (Acyl-carrier-protein) S-malonyltransferase complement(75252..76160) Variovorax paradoxus S110 7975829 YP_002947237.1 CDS Vapar_5369 NC_012792.1 76157 77020 R PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: dac:Daci_1763 triphosphoribosyl-dephospho-CoA synthase; Triphosphoribosyl-dephospho-CoA synthase complement(76157..77020) Variovorax paradoxus S110 7975830 YP_002947238.1 CDS Vapar_5370 NC_012792.1 77017 77706 R TIGRFAM: holo-ACP synthase, malonate decarboxylase-specific; KEGG: lch:Lcho_0075 holo-ACP synthase, malonate decarboxylase-specific; holo-ACP synthase, malonate decarboxylase-specific complement(77017..77706) Variovorax paradoxus S110 7975831 YP_002947239.1 CDS Vapar_5371 NC_012792.1 77724 78425 R TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: mpt:Mpe_A2892 malonate decarboxylase gamma subunit; malonate decarboxylase, gamma subunit complement(77724..78425) Variovorax paradoxus S110 7975832 YP_002947240.1 CDS Vapar_5372 NC_012792.1 78440 79318 R The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta complement(78440..79318) Variovorax paradoxus S110 7975833 YP_002947241.1 CDS Vapar_5373 NC_012792.1 79315 79647 R TIGRFAM: malonate decarboxylase acyl carrier protein; PFAM: malonate decarboxylase delta subunit; KEGG: dac:Daci_1767 malonate decarboxylase acyl carrier protein; malonate decarboxylase acyl carrier protein complement(79315..79647) Variovorax paradoxus S110 7975834 YP_002947242.1 CDS Vapar_5374 NC_012792.1 79662 81344 R TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: mpt:Mpe_A2895 alpha subunit of malonate decarboxylase; malonate decarboxylase, alpha subunit complement(79662..81344) Variovorax paradoxus S110 7975835 YP_002947243.1 CDS Vapar_5375 NC_012792.1 81354 82118 R TIGRFAM: malonate transporter, MadM subunit; PFAM: malonate/sodium symporter MadM subunit; KEGG: bur:Bcep18194_A4411 malonate/sodium symporter MadM subunit; malonate transporter, MadM subunit complement(81354..82118) Variovorax paradoxus S110 7975836 YP_002947244.1 CDS Vapar_5376 NC_012792.1 82124 82540 R TIGRFAM: malonate transporter, MadL subunit; PFAM: malonate transporter MadL subunit; KEGG: bpy:Bphyt_6323 malonate transporter, MadL subunit; malonate transporter, MadL subunit complement(82124..82540) Variovorax paradoxus S110 7975837 YP_002947245.1 CDS Vapar_5377 NC_012792.1 82670 83584 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mpt:Mpe_A2897 LysR family transcriptional regulator; LysR family transcriptional regulator complement(82670..83584) Variovorax paradoxus S110 7975838 YP_002947246.1 CDS Vapar_5378 NC_012792.1 83698 84723 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo1118 AraC family transcriptional regulator; AraC family transcriptional regulator 83698..84723 Variovorax paradoxus S110 7975839 YP_002947247.1 CDS Vapar_5379 NC_012792.1 84737 85924 R PFAM: Extracellular ligand-binding receptor; KEGG: bav:BAV3033 ABC transporter, substrate-binding protein; Extracellular ligand-binding receptor complement(84737..85924) Variovorax paradoxus S110 7975840 YP_002947248.1 CDS Vapar_5380 NC_012792.1 86114 87376 D PFAM: dienelactone hydrolase; KEGG: reu:Reut_A3180 carboxymethylenebutenolidase; Carboxymethylenebutenolidase 86114..87376 Variovorax paradoxus S110 7975841 YP_002947249.1 CDS Vapar_5381 NC_012792.1 87373 88338 D PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: mms:mma_1222 vanillate monooxygenase, beta subunit; ferredoxin 87373..88338 Variovorax paradoxus S110 7975842 YP_002947250.1 CDS Vapar_5382 NC_012792.1 88355 89671 D PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: swi:Swit_1874 Rieske (2Fe-2S) domain-containing protein; Rieske (2Fe-2S) domain protein 88355..89671 Variovorax paradoxus S110 7975843 YP_002947251.1 CDS Vapar_5383 NC_012792.1 89668 90156 D PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: swi:Swit_1875 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase beta subunit 89668..90156 Variovorax paradoxus S110 7975844 YP_002947252.1 CDS Vapar_5384 NC_012792.1 90153 90752 D PFAM: isochorismatase hydrolase; KEGG: swi:Swit_1876 isochorismatase hydrolase; isochorismatase hydrolase 90153..90752 Variovorax paradoxus S110 7975845 YP_002947253.1 CDS Vapar_5385 NC_012792.1 90749 91537 D PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: bur:Bcep18194_C7070 short chain dehydrogenase; short chain dehydrogenase 90749..91537 Variovorax paradoxus S110 7975846 YP_002947254.1 CDS Vapar_5386 NC_012792.1 91558 92532 R PFAM: conserved hypothetical protein; KEGG: bpt:Bpet0514 putative secreted protein; hypothetical protein complement(91558..92532) Variovorax paradoxus S110 7975847 YP_002947255.1 CDS Vapar_5387 NC_012792.1 92578 93840 R PFAM: monooxygenase FAD-binding; KEGG: bpt:Bpet0515 hypothetical protein; hypothetical protein complement(92578..93840) Variovorax paradoxus S110 7975848 YP_002947256.1 CDS Vapar_5388 NC_012792.1 93958 94857 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbr:BB2780 LysR family transcriptional regulator; LysR family transcriptional regulator 93958..94857 Variovorax paradoxus S110 7975849 YP_002947257.1 CDS Vapar_5389 NC_012792.1 95239 95508 R KEGG: bcj:BCAL3162 hypothetical protein; hypothetical protein complement(95239..95508) Variovorax paradoxus S110 7975850 YP_002947258.1 CDS Vapar_5390 NC_012792.1 95492 96067 R PFAM: DNA polymerase beta domain protein region; KEGG: bcm:Bcenmc03_0814 DNA polymerase beta subunit; DNA polymerase beta domain protein region complement(95492..96067) Variovorax paradoxus S110 7975851 YP_002947259.1 CDS Vapar_5395 NC_012792.1 97506 98423 D PFAM: beta-lactamase domain protein; KEGG: pfo:Pfl01_2454 beta-lactamase-like; beta-lactamase domain protein 97506..98423 Variovorax paradoxus S110 7975856 YP_002947260.1 CDS Vapar_5396 NC_012792.1 98524 99003 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bpy:Bphyt_2344 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase like protein, AhpD family 98524..99003 Variovorax paradoxus S110 7975857 YP_002947261.1 CDS Vapar_5397 NC_012792.1 99421 99654 D hypothetical protein 99421..99654 Variovorax paradoxus S110 7975858 YP_002947262.1 CDS Vapar_5398 NC_012792.1 99699 100451 D KEGG: vei:Veis_1597 hypothetical protein; hypothetical protein 99699..100451 Variovorax paradoxus S110 7975859 YP_002947263.1 CDS Vapar_5399 NC_012792.1 100465 102225 D PFAM: glucose-methanol-choline oxidoreductase; KEGG: vei:Veis_1598 glucose-methanol-choline oxidoreductase; Gluconate 2-dehydrogenase (acceptor) 100465..102225 Variovorax paradoxus S110 7975860 YP_002947264.1 CDS Vapar_5401 NC_012792.1 102814 105534 D PFAM: transcriptional regulator domain protein; KEGG: bja:blr6255 hypothetical protein; transcriptional regulator, winged helix family 102814..105534 Variovorax paradoxus S110 7975862 YP_002947265.1 CDS Vapar_5402 NC_012792.1 105525 108230 R PFAM: transcriptional regulator domain protein; KEGG: bja:blr6255 hypothetical protein; transcriptional regulator, winged helix family complement(105525..108230) Variovorax paradoxus S110 7975863 YP_002947266.1 CDS Vapar_5403 NC_012792.1 108223 108843 R PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: aeh:Mlg_1669 two component LuxR family transcriptional regulator; transcriptional regulator, LuxR family complement(108223..108843) Variovorax paradoxus S110 7975864 YP_002947267.1 CDS Vapar_5404 NC_012792.1 108840 109466 R PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: afw:Anae109_0915 two component LuxR family transcriptional regulator; transcriptional regulator, LuxR family complement(108840..109466) Variovorax paradoxus S110 7975865 YP_002947268.1 CDS Vapar_5405 NC_012792.1 109615 110439 R PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0002869 putative hydrolase protein; alpha/beta hydrolase fold protein complement(109615..110439) Variovorax paradoxus S110 7975866 YP_002947269.1 CDS Vapar_5406 NC_012792.1 110436 110750 R hypothetical protein complement(110436..110750) Variovorax paradoxus S110 7975867 YP_002947270.1 CDS Vapar_5408 NC_012792.1 112206 115067 D PFAM: transcriptional regulator domain protein; KEGG: pfo:Pfl01_1958 transcriptional regulator; transcriptional regulator, winged helix family 112206..115067 Variovorax paradoxus S110 7975869 YP_002947271.1 CDS Vapar_5409 NC_012792.1 115234 116277 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_6638 LysR family transcriptional regulator; LysR family transcriptional regulator 115234..116277 Variovorax paradoxus S110 7975103 YP_002947272.1 CDS Vapar_5410 NC_012792.1 116397 117365 D PFAM: alpha/beta hydrolase fold; KEGG: mlo:mlr0978 non-heme chloroperoxidase; alpha/beta hydrolase fold protein 116397..117365 Variovorax paradoxus S110 7975104 YP_002947273.1 CDS Vapar_5411 NC_012792.1 117402 118265 D KEGG: bpy:Bphyt_5641 hypothetical protein; hypothetical protein 117402..118265 Variovorax paradoxus S110 7975105 YP_002947274.1 CDS Vapar_5412 NC_012792.1 118287 118988 D PFAM: dienelactone hydrolase; KEGG: cak:Caul_5021 carboxymethylenebutenolidase; Carboxymethylenebutenolidase 118287..118988 Variovorax paradoxus S110 7975106 YP_002947275.1 CDS Vapar_5413 NC_012792.1 119077 119700 D PFAM: Glutathione S-transferase domain; KEGG: mes:Meso_2547 glutathione S-transferase-like; Glutathione S-transferase domain protein 119077..119700 Variovorax paradoxus S110 7975107 YP_002947276.1 CDS Vapar_5414 NC_012792.1 119875 120924 D KEGG: reh:H16_B1412 putative glutathione S-transferase; putative glutathione S-transferase 119875..120924 Variovorax paradoxus S110 7975108 YP_002947277.1 CDS Vapar_5415 NC_012792.1 121037 122440 D PFAM: Amidase; KEGG: reh:H16_B1413 amidotransferase subunit A; Amidase 121037..122440 Variovorax paradoxus S110 7975109 YP_002947278.1 CDS Vapar_5416 NC_012792.1 122437 123324 D PFAM: tryptophan 23-dioxygenase; KEGG: reu:Reut_C5980 putative tryptophan 2,3-dioxygenase; tryptophan 23-dioxygenase 122437..123324 Variovorax paradoxus S110 7975110 YP_002947279.1 CDS Vapar_5417 NC_012792.1 123493 124173 D PFAM: nitroreductase; KEGG: reu:Reut_C5984 nitroreductase; nitroreductase 123493..124173 Variovorax paradoxus S110 7975111 YP_002947280.1 CDS Vapar_5418 NC_012792.1 124205 125155 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_C5985 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 124205..125155 Variovorax paradoxus S110 7975112 YP_002947281.1 CDS Vapar_5419 NC_012792.1 125205 125834 D TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; NADPH-dependent FMN reductase; KEGG: reh:H16_B1419 multimeric flavodoxin WrbA; flavoprotein WrbA 125205..125834 Variovorax paradoxus S110 7975113 YP_002947282.1 CDS Vapar_5420 NC_012792.1 125933 126856 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reh:H16_B1414 transcriptional regulator, LysR-family; LysR family transcriptional regulator 125933..126856 Variovorax paradoxus S110 7975114 YP_002947283.1 CDS Vapar_5421 NC_012792.1 126980 128098 D PFAM: iron-containing alcohol dehydrogenase; KEGG: reh:H16_B1417 alcohol dehydrogenase, class IV; iron-containing alcohol dehydrogenase 126980..128098 Variovorax paradoxus S110 7975115 YP_002947284.1 CDS Vapar_5422 NC_012792.1 128244 129479 D KEGG: sus:Acid_2729 hypothetical protein; hypothetical protein 128244..129479 Variovorax paradoxus S110 7975116 YP_002947285.1 CDS Vapar_5423 NC_012792.1 129483 130283 D KEGG: sus:Acid_2730 hypothetical protein; hypothetical protein 129483..130283 Variovorax paradoxus S110 7975117 YP_002947286.1 CDS Vapar_5424 NC_012792.1 130352 130957 D KEGG: dac:Daci_0022 hypothetical protein; hypothetical protein 130352..130957 Variovorax paradoxus S110 7975118 YP_002947287.1 CDS Vapar_5425 NC_012792.1 130954 131832 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: eba:ebA3750 putative transcriptional regulator; AraC family transcriptional regulator complement(130954..131832) Variovorax paradoxus S110 7975119 YP_002947288.1 CDS Vapar_5426 NC_012792.1 131847 133037 D PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA3751 hypothetical protein; major facilitator superfamily MFS_1 131847..133037 Variovorax paradoxus S110 7975120 YP_002947289.1 CDS Vapar_5427 NC_012792.1 133311 133928 D PFAM: Glutathione S-transferase domain; KEGG: smt:Smal_0795 glutathione S-transferase domain; Glutathione transferase 133311..133928 Variovorax paradoxus S110 7975121 YP_002947290.1 CDS Vapar_5428 NC_012792.1 133942 134301 D hypothetical protein 133942..134301 Variovorax paradoxus S110 7975122 YP_002947291.1 CDS Vapar_5429 NC_012792.1 134320 135513 D PFAM: OsmC family protein; KEGG: swi:Swit_0979 OsmC family protein; OsmC family protein 134320..135513 Variovorax paradoxus S110 7975123 YP_002947292.1 CDS Vapar_5430 NC_012792.1 135639 136058 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: bph:Bphy_6639 cupin 2 domain-containing protein; Cupin 2 conserved barrel domain protein 135639..136058 Variovorax paradoxus S110 7975124 YP_002947293.1 CDS Vapar_5431 NC_012792.1 136282 137181 D PFAM: Glutathione S-transferase domain; KEGG: bpa:BPP2935 glutathione S-transferase; Glutathione S-transferase domain protein 136282..137181 Variovorax paradoxus S110 7975125 YP_002947294.1 CDS Vapar_5432 NC_012792.1 137249 137506 D KEGG: aba:Acid345_4444 hypothetical protein; hypothetical protein 137249..137506 Variovorax paradoxus S110 7975126 YP_002947295.1 CDS Vapar_5433 NC_012792.1 137484 138110 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bpy:Bphyt_5154 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 137484..138110 Variovorax paradoxus S110 7975127 YP_002947296.1 CDS Vapar_5434 NC_012792.1 138185 138481 R hypothetical protein complement(138185..138481) Variovorax paradoxus S110 7975128 YP_002947297.1 CDS Vapar_5435 NC_012792.1 138768 139247 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bpy:Bphyt_2344 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase like protein, AhpD family 138768..139247 Variovorax paradoxus S110 7975129 YP_002947298.1 CDS Vapar_5436 NC_012792.1 139311 140066 D PFAM: NmrA family protein; KEGG: bpy:Bphyt_2341 NmrA family protein; NmrA family protein 139311..140066 Variovorax paradoxus S110 7975130 YP_002947299.1 CDS Vapar_5437 NC_012792.1 140150 140731 D PFAM: YceI family protein; KEGG: msl:Msil_3203 YceI family protein; YceI family protein 140150..140731 Variovorax paradoxus S110 7975131 YP_002947300.1 CDS Vapar_5438 NC_012792.1 140769 141314 D PFAM: OsmC family protein; KEGG: bpy:Bphyt_2340 OsmC family protein; OsmC family protein 140769..141314 Variovorax paradoxus S110 7975132 YP_002947301.1 CDS Vapar_5439 NC_012792.1 141378 142835 D PFAM: Catalase domain protein; KEGG: swi:Swit_0269 catalase; Catalase 141378..142835 Variovorax paradoxus S110 7975133 YP_002947302.1 CDS Vapar_5440 NC_012792.1 142848 143735 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpy:Bphyt_6695 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(142848..143735) Variovorax paradoxus S110 7975134 YP_002947303.1 CDS Vapar_5441 NC_012792.1 143840 144589 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SM_b20871 putative dehydrogenasereductase, short-chain dehydrogenase/reductase protein; short-chain dehydrogenase/reductase SDR 143840..144589 Variovorax paradoxus S110 7975135 YP_002947304.1 CDS Vapar_5442 NC_012792.1 144552 145571 R PFAM: acyltransferase 3; KEGG: dac:Daci_0901 acyltransferase 3; acyltransferase 3 complement(144552..145571) Variovorax paradoxus S110 7975136 YP_002947305.1 CDS Vapar_5443 NC_012792.1 145582 147459 R PFAM: X-Pro dipeptidyl-peptidase domain protein; peptidase S15; KEGG: dac:Daci_3305 X-Pro dipeptidyl-peptidase domain-containing protein; X-Pro dipeptidyl-peptidase domain protein complement(145582..147459) Variovorax paradoxus S110 7975137 YP_002947306.1 CDS Vapar_5444 NC_012792.1 147741 148811 D PFAM: alpha/beta hydrolase fold; KEGG: bbt:BBta_7159 alpha/beta family hydrolase; alpha/beta hydrolase fold protein 147741..148811 Variovorax paradoxus S110 7975138 YP_002947307.1 CDS Vapar_5445 NC_012792.1 148875 149900 D PFAM: alpha/beta hydrolase fold; KEGG: smd:Smed_3910 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 148875..149900 Variovorax paradoxus S110 7975139 YP_002947308.1 CDS Vapar_5446 NC_012792.1 150124 151371 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bja:blr6437 gluconolactonase precursor; SMP-30/Gluconolaconase/LRE domain protein 150124..151371 Variovorax paradoxus S110 7975140 YP_002947309.1 CDS Vapar_5447 NC_012792.1 151415 151846 R PFAM: Calcium/calmodulin dependent protein kinase II association-domain protein; KEGG: rso:RS03100 putative signal peptide protein; Calcium/calmodulin dependent protein kinase II association-domain protein complement(151415..151846) Variovorax paradoxus S110 7975141 YP_002947310.1 CDS Vapar_5448 NC_012792.1 152024 152713 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: aav:Aave_3002 two component transcriptional regulator; two component transcriptional regulator, winged helix family complement(152024..152713) Variovorax paradoxus S110 7975142 YP_002947311.1 CDS Vapar_5449 NC_012792.1 152710 154338 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: rso:RS03102 two-component sensor kinase transcription regulator protein; histidine kinase complement(152710..154338) Variovorax paradoxus S110 7975143 YP_002947312.1 CDS Vapar_5450 NC_012792.1 154350 154523 R hypothetical protein complement(154350..154523) Variovorax paradoxus S110 7975144 YP_002947313.1 CDS Vapar_5451 NC_012792.1 154639 154917 R KEGG: mmw:Mmwyl1_1400 prevent-host-death family protein; prevent-host-death family protein complement(154639..154917) Variovorax paradoxus S110 7975145 YP_002947314.1 CDS Vapar_5452 NC_012792.1 155073 156053 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3546 hypothetical protein; hypothetical protein complement(155073..156053) Variovorax paradoxus S110 7975146 YP_002947315.1 CDS Vapar_5453 NC_012792.1 156116 157210 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: azc:AZC_1923 threonine aldolase; aromatic amino acid beta-eliminating lyase/threonine aldolase complement(156116..157210) Variovorax paradoxus S110 7975147 YP_002947316.1 CDS Vapar_5454 NC_012792.1 157296 158213 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_1928 transcriptional regulator; LysR family transcriptional regulator 157296..158213 Variovorax paradoxus S110 7975148 YP_002947317.1 CDS Vapar_5455 NC_012792.1 158247 159356 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rde:RD1_0690 racemase, putative; Mandelate racemase/muconate lactonizing protein complement(158247..159356) Variovorax paradoxus S110 7975149 YP_002947318.1 CDS Vapar_5456 NC_012792.1 159461 159937 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bcj:BCAL3084 putative guanine/cytidine deaminase; CMP/dCMP deaminase zinc-binding complement(159461..159937) Variovorax paradoxus S110 7975150 YP_002947319.1 CDS Vapar_5457 NC_012792.1 159959 160294 R TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: bcj:BCAL3085 putative transthyretin-like protein; hydroxyisourate hydrolase complement(159959..160294) Variovorax paradoxus S110 7975151 YP_002947320.1 CDS Vapar_5458 NC_012792.1 160325 160843 R PFAM: Transthyretin; KEGG: reu:Reut_A0032 transthyretin; Transthyretin complement(160325..160843) Variovorax paradoxus S110 7975152 YP_002947321.1 CDS Vapar_5459 NC_012792.1 160886 161413 R TIGRFAM: OHCU decarboxylase; KEGG: mrd:Mrad2831_5850 hypothetical protein; OHCU decarboxylase complement(160886..161413) Variovorax paradoxus S110 7975153 YP_002947322.1 CDS Vapar_5460 NC_012792.1 161424 162776 R PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_5847 major facilitator transporter; major facilitator superfamily MFS_1 complement(161424..162776) Variovorax paradoxus S110 7975154 YP_002947323.1 CDS Vapar_5461 NC_012792.1 162964 163941 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: tmz:Tmz1t_1347 transcriptional regulator, LysR family; LysR family transcriptional regulator 162964..163941 Variovorax paradoxus S110 7975155 YP_002947324.1 CDS Vapar_5463 NC_012792.1 165002 166447 R PFAM: Catalase domain protein; KEGG: gbe:GbCGDNIH1_1969 catalase; Catalase complement(165002..166447) Variovorax paradoxus S110 7975157 YP_002947325.1 CDS Vapar_5464 NC_012792.1 166654 167358 D PFAM: protein of unknown function DUF1275; KEGG: ara:Arad_4773 membrane protein; hypothetical protein 166654..167358 Variovorax paradoxus S110 7975158 YP_002947326.1 CDS Vapar_5465 NC_012792.1 167380 167694 R KEGG: mpt:Mpe_A2206 hypothetical protein; hypothetical protein complement(167380..167694) Variovorax paradoxus S110 7975159 YP_002947327.1 CDS Vapar_5466 NC_012792.1 167726 168325 R KEGG: smd:Smed_3977 helix-turn-helix-domain containing protein AraC type; AraC family transcriptional regulator complement(167726..168325) Variovorax paradoxus S110 7975160 YP_002947328.1 CDS Vapar_5467 NC_012792.1 168345 169166 R PFAM: alpha/beta hydrolase fold; KEGG: bja:blr6960 arylesterase; alpha/beta hydrolase fold protein complement(168345..169166) Variovorax paradoxus S110 7975161 YP_002947329.1 CDS Vapar_5468 NC_012792.1 169202 170809 R PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: dac:Daci_1554 protein of unknown function DUF894 DitE; hypothetical protein complement(169202..170809) Variovorax paradoxus S110 7975162 YP_002947330.1 CDS Vapar_5469 NC_012792.1 170802 171197 R PFAM: DoxX family protein; KEGG: reu:Reut_B4847 DoxX; DoxX family protein complement(170802..171197) Variovorax paradoxus S110 7975163 YP_002947331.1 CDS Vapar_5470 NC_012792.1 171197 173086 R PFAM: Amidohydrolase 3; KEGG: aav:Aave_0760 amidohydrolase 3; Amidohydrolase 3 complement(171197..173086) Variovorax paradoxus S110 7975164 YP_002947332.1 CDS Vapar_5471 NC_012792.1 173191 173466 R PFAM: protein of unknown function DUF1427; KEGG: bpl:BURPS1106A_A0597 hypothetical protein; hypothetical protein complement(173191..173466) Variovorax paradoxus S110 7975165 YP_002947333.1 CDS Vapar_5472 NC_012792.1 173484 174137 R PFAM: isochorismatase hydrolase; KEGG: xau:Xaut_1277 isochorismatase hydrolase; isochorismatase hydrolase complement(173484..174137) Variovorax paradoxus S110 7975166 YP_002947334.1 CDS Vapar_5473 NC_012792.1 174277 174996 R PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: aav:Aave_0758 pirin domain-containing protein; Pirin domain protein complement(174277..174996) Variovorax paradoxus S110 7975167 YP_002947335.1 CDS Vapar_5474 NC_012792.1 175161 176069 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_0757 LysR family transcriptional regulator; LysR family transcriptional regulator 175161..176069 Variovorax paradoxus S110 7975168 YP_002947336.1 CDS Vapar_5475 NC_012792.1 176091 177008 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bja:bll6252 transcriptional regulatory protein; AraC family transcriptional regulator complement(176091..177008) Variovorax paradoxus S110 7975169 YP_002947337.1 CDS Vapar_5476 NC_012792.1 177076 177513 R PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: rfr:Rfer_2797 signal-transduction protein; putative signal transduction protein with CBS domains complement(177076..177513) Variovorax paradoxus S110 7975170 YP_002947338.1 CDS Vapar_5477 NC_012792.1 177559 178614 R catalyzes the coenzyme A-dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta complement(177559..178614) Variovorax paradoxus S110 7975171 YP_002947339.1 CDS Vapar_5478 NC_012792.1 178611 180452 R PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rfr:Rfer_2799 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein complement(178611..180452) Variovorax paradoxus S110 7975172 YP_002947340.1 CDS Vapar_5479 NC_012792.1 180449 182248 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2800 4Fe-4S ferredoxin, iron-sulfur binding; Glutamate synthase (NADPH) complement(180449..182248) Variovorax paradoxus S110 7975173 YP_002947341.1 CDS Vapar_5480 NC_012792.1 182364 182825 R hypothetical protein complement(182364..182825) Variovorax paradoxus S110 7975174 YP_002947342.1 CDS Vapar_5481 NC_012792.1 182959 183504 D KEGG: cja:CJA_3592 hypothetical protein; hypothetical protein 182959..183504 Variovorax paradoxus S110 7975175 YP_002947343.1 CDS Vapar_5482 NC_012792.1 183511 185304 R PFAM: Tannase and feruloyl esterase; KEGG: bpy:Bphyt_4018 feruloyl esterase; Tannase and feruloyl esterase complement(183511..185304) Variovorax paradoxus S110 7975176 YP_002947344.1 CDS Vapar_5483 NC_012792.1 185417 186109 R PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: dar:Daro_0248 cyclic nucleotide-binding; transcriptional regulator, Crp/Fnr family complement(185417..186109) Variovorax paradoxus S110 7975177 YP_002947345.1 CDS Vapar_5484 NC_012792.1 186283 188463 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mxa:MXAN_1752 isoquinoline 1-oxidoreductase, beta subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding 186283..188463 Variovorax paradoxus S110 7975178 YP_002947346.1 CDS Vapar_5485 NC_012792.1 188474 188932 D PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: mxa:MXAN_1751 isoquinoline 1-oxidoreductase, alpha subunit; (2Fe-2S)-binding domain protein 188474..188932 Variovorax paradoxus S110 7975179 YP_002947347.1 CDS Vapar_5486 NC_012792.1 188929 189345 R KEGG: rso:RSc0263 hypothetical protein; hypothetical protein complement(188929..189345) Variovorax paradoxus S110 7975180 YP_002947348.1 CDS Vapar_5487 NC_012792.1 189347 189658 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rso:RSc0264 hypothetical protein; prevent-host-death family protein complement(189347..189658) Variovorax paradoxus S110 7975181 YP_002947349.1 CDS Vapar_5488 NC_012792.1 189826 192036 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: ara:Arad_7431 xanthine dehydrogenase protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding complement(189826..192036) Variovorax paradoxus S110 7975182 YP_002947350.1 CDS Vapar_5489 NC_012792.1 192042 192992 R PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: aav:Aave_1486 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase FAD-binding complement(192042..192992) Variovorax paradoxus S110 7975183 YP_002947351.1 CDS Vapar_5490 NC_012792.1 192989 193636 R PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: dac:Daci_3818 2Fe-2S iron-sulfur cluster binding domain-containing protein; (2Fe-2S)-binding domain protein complement(192989..193636) Variovorax paradoxus S110 7975266 YP_002947352.1 CDS Vapar_5491 NC_012792.1 193867 194829 R PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pfo:Pfl01_2474 AraC family transcriptional regulator; AraC family transcriptional regulator complement(193867..194829) Variovorax paradoxus S110 7975348 YP_002947353.1 CDS Vapar_5492 NC_012792.1 195000 195989 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B0844 probable extra-cytoplasmic solute receptor; hypothetical protein complement(195000..195989) Variovorax paradoxus S110 7975349 YP_002947354.1 CDS Vapar_5493 NC_012792.1 195986 197251 R PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: ccs:CCNA_01892 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(195986..197251) Variovorax paradoxus S110 7975350 YP_002947355.1 CDS Vapar_5494 NC_012792.1 197251 197799 R KEGG: mlo:mlr5878 gamma-BHC dehydrochlorinase; gamma-BHC dehydrochlorinase complement(197251..197799) Variovorax paradoxus S110 7975351 YP_002947356.1 CDS Vapar_5495 NC_012792.1 197873 198253 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ara:Arad_9350 glyoxalase protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(197873..198253) Variovorax paradoxus S110 7975352 YP_002947357.1 CDS Vapar_5496 NC_012792.1 198250 199008 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr3451 putative oxidoreductase; short-chain dehydrogenase/reductase SDR complement(198250..199008) Variovorax paradoxus S110 7975353 YP_002947358.1 CDS Vapar_5497 NC_012792.1 199005 201137 R PFAM: CoA-binding domain protein; KEGG: bja:blr3446 6-carboxyhexanoate--CoA ligase; CoA-binding domain protein complement(199005..201137) Variovorax paradoxus S110 7975354 YP_002947359.1 CDS Vapar_5498 NC_012792.1 201139 201900 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(201139..201900) Variovorax paradoxus S110 7975355 YP_002947360.1 CDS Vapar_5499 NC_012792.1 201897 203009 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bmj:BMULJ_02217 putative acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain protein complement(201897..203009) Variovorax paradoxus S110 7975356 YP_002947361.1 CDS Vapar_5500 NC_012792.1 203013 204173 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ccs:CCNA_01883 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain protein complement(203013..204173) Variovorax paradoxus S110 7975357 YP_002947362.1 CDS Vapar_5501 NC_012792.1 204204 205139 R PFAM: flavin reductase domain protein FMN-binding; GntR domain protein; KEGG: bxe:Bxe_A3603 putative oxygenase; flavin reductase domain protein FMN-binding complement(204204..205139) Variovorax paradoxus S110 7975358 YP_002947363.1 CDS Vapar_5502 NC_012792.1 205165 206256 R PFAM: Luciferase-like monooxygenase; KEGG: bja:bll3440 hypothetical protein; Luciferase-like monooxygenase complement(205165..206256) Variovorax paradoxus S110 7975359 YP_002947364.1 CDS Vapar_5503 NC_012792.1 206359 207267 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bja:blr3441 transcriptional regulatory protein; LysR family transcriptional regulator 206359..207267 Variovorax paradoxus S110 7975360 YP_002947365.1 CDS Vapar_5504 NC_012792.1 207335 208468 R KEGG: pna:Pnap_4340 hypothetical protein; hypothetical protein complement(207335..208468) Variovorax paradoxus S110 7975361 YP_002947366.1 CDS Vapar_5505 NC_012792.1 208724 208960 D hypothetical protein 208724..208960 Variovorax paradoxus S110 7975362 YP_002947367.1 CDS Vapar_5506 NC_012792.1 209093 209974 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bja:bll3442 putative senescence marker protein-30 (SMP-30) (regucalcin) (RC); SMP-30/Gluconolaconase/LRE domain protein complement(209093..209974) Variovorax paradoxus S110 7975363 YP_002947368.1 CDS Vapar_5507 NC_012792.1 210113 211072 D PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5147 uncharacterized protein UPF0065; hypothetical protein 210113..211072 Variovorax paradoxus S110 7975364 YP_002947369.1 CDS Vapar_5509 NC_012792.1 211332 211640 D KEGG: dac:Daci_0265 hypothetical protein; hypothetical protein 211332..211640 Variovorax paradoxus S110 7975366 YP_002947370.1 CDS Vapar_5510 NC_012792.1 212022 212291 D KEGG: vei:Veis_2291 CopG/Arc/MetJ family transcriptional regulator; putative transcriptional regulator, CopG/Arc/MetJ family 212022..212291 Variovorax paradoxus S110 7975367 YP_002947371.1 CDS Vapar_5511 NC_012792.1 212303 212614 D PFAM: plasmid stabilization system; KEGG: vei:Veis_2290 plasmid stabilization system protein; plasmid stabilization system 212303..212614 Variovorax paradoxus S110 7975368 YP_002947372.1 CDS Vapar_5512 NC_012792.1 212643 213854 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_1756 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(212643..213854) Variovorax paradoxus S110 7975369 YP_002947373.1 CDS Vapar_5513 NC_012792.1 213955 215250 R catalyzes the conversion of carbamoyl phosphate and aspartate to form N-carbamoyl aspartate; aspartate carbamoyltransferase complement(213955..215250) Variovorax paradoxus S110 7975370 YP_002947374.1 CDS Vapar_5514 NC_012792.1 215329 216942 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bbr:BB2454 alcohol dehydrogenase [acceptor]; glucose-methanol-choline oxidoreductase complement(215329..216942) Variovorax paradoxus S110 7975371 YP_002947375.1 CDS Vapar_5515 NC_012792.1 216939 217940 R SMART: extracellular solute-binding protein family 3; KEGG: bbr:BB2455 hypothetical protein; extracellular solute-binding protein family 3 complement(216939..217940) Variovorax paradoxus S110 7975372 YP_002947376.1 CDS Vapar_5516 NC_012792.1 217974 218789 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpa:BPP1387 ATP-binding component of ABC transporter; ABC transporter complement(217974..218789) Variovorax paradoxus S110 7975373 YP_002947377.1 CDS Vapar_5517 NC_012792.1 218806 219576 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB2457 permease component of ABC transporter; binding-protein-dependent transport systems inner membrane component complement(218806..219576) Variovorax paradoxus S110 7975374 YP_002947378.1 CDS Vapar_5518 NC_012792.1 219670 220395 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH; KEGG: bbr:BB2458 GntR family transcriptional regulator; GntR family transcriptional regulator 219670..220395 Variovorax paradoxus S110 7975375 YP_002947379.1 CDS Vapar_5519 NC_012792.1 220392 221537 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bpt:Bpet2903 putative mandelate racemase/muconate lactonizing enzyme; Mandelate racemase/muconate lactonizing protein 220392..221537 Variovorax paradoxus S110 7975376 YP_002947380.1 CDS Vapar_5520 NC_012792.1 221539 221874 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: pol:Bpro_0891 cupin 2, conserved barrel; Cupin 2 conserved barrel domain protein complement(221539..221874) Variovorax paradoxus S110 7975377 YP_002947381.1 CDS Vapar_5521 NC_012792.1 222066 222329 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: aca:ACP_3428 prevent-host-death family protein; prevent-host-death family protein 222066..222329 Variovorax paradoxus S110 7975378 YP_002947382.1 CDS Vapar_5522 NC_012792.1 222334 222660 D KEGG: xcv:XCV0819 putative CcdB cytotoxin-like protein; putative CcdB cytotoxin-like protein 222334..222660 Variovorax paradoxus S110 7975379 YP_002947383.1 CDS Vapar_5523 NC_012792.1 222729 224873 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: rru:Rru_A3299 glycoside hydrolase family protein; glycoside hydrolase family 3 domain protein complement(222729..224873) Variovorax paradoxus S110 7975380 YP_002947384.1 CDS Vapar_5524 NC_012792.1 225008 226306 D KEGG: msl:Msil_0406 hypothetical protein; hypothetical protein 225008..226306 Variovorax paradoxus S110 7975381 YP_002947385.1 CDS Vapar_5525 NC_012792.1 226303 227694 D PFAM: glycoside hydrolase 15-related; KEGG: msl:Msil_0405 glucan 1,4-alpha-glucosidase; Glucan 1,4-alpha-glucosidase 226303..227694 Variovorax paradoxus S110 7975382 YP_002947386.1 CDS Vapar_5526 NC_012792.1 227691 229454 D PFAM: ABC transporter domain protein; ABC transporter related; SbmABacA family protein; KEGG: sme:SM_b20937 putative ABC transporter protein consisting of fused ATP-binding and permease components; ABC transporter 227691..229454 Variovorax paradoxus S110 7975383 YP_002947387.1 CDS Vapar_5527 NC_012792.1 229451 231739 D PFAM: peptidase S15; KEGG: sml:Smlt2275 putative esterase/peptidase; peptidase S15 229451..231739 Variovorax paradoxus S110 7975384 YP_002947388.1 CDS Vapar_5528 NC_012792.1 231744 233381 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mrd:Mrad2831_1595 alpha amylase catalytic region; alpha amylase catalytic region complement(231744..233381) Variovorax paradoxus S110 7975385 YP_002947389.1 CDS Vapar_5529 NC_012792.1 233576 234256 D KEGG: pna:Pnap_3576 hypothetical protein; hypothetical protein 233576..234256 Variovorax paradoxus S110 7975386 YP_002947390.1 CDS Vapar_5531 NC_012792.1 234461 235426 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_1161 uncharacterized protein UPF0065; hypothetical protein complement(234461..235426) Variovorax paradoxus S110 7975388 YP_002947391.1 CDS Vapar_5532 NC_012792.1 235428 236333 R PFAM: dihydrodipicolinate synthetase; KEGG: acr:Acry_0196 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(235428..236333) Variovorax paradoxus S110 7975389 YP_002947392.1 CDS Vapar_5533 NC_012792.1 236368 237294 R PFAM: Aldose 1-epimerase; KEGG: rpi:Rpic_0950 aldose 1-epimerase; Aldose 1-epimerase complement(236368..237294) Variovorax paradoxus S110 7975390 YP_002947393.1 CDS Vapar_5534 NC_012792.1 237305 238519 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: oan:Oant_3341 mandelate racemase/muconate lactonizing protein; Mandelate racemase/muconate lactonizing protein complement(237305..238519) Variovorax paradoxus S110 7975391 YP_002947394.1 CDS Vapar_5535 NC_012792.1 238519 239361 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_A4848 ABC transporter, inner membrane subunit; binding-protein-dependent transport systems inner membrane component complement(238519..239361) Variovorax paradoxus S110 7975392 YP_002947395.1 CDS Vapar_5536 NC_012792.1 239364 240227 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpy:Bphyt_4281 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(239364..240227) Variovorax paradoxus S110 7975393 YP_002947396.1 CDS Vapar_5537 NC_012792.1 240224 241324 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bpy:Bphyt_4280 ABC transporter related; ABC transporter complement(240224..241324) Variovorax paradoxus S110 7975394 YP_002947397.1 CDS Vapar_5538 NC_012792.1 241414 242604 R KEGG: bac:BamMC406_1609 ABC transporter, periplasmic ligand binding protein; ABC transporter substrate-binding protein complement(241414..242604) Variovorax paradoxus S110 7975395 YP_002947398.1 CDS Vapar_5539 NC_012792.1 242808 243521 D PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: bph:Bphy_4435 GntR domain-containing protein; GntR family transcriptional regulator 242808..243521 Variovorax paradoxus S110 7975396 YP_002947399.1 CDS Vapar_5540 NC_012792.1 243615 244031 R PFAM: protein of unknown function DUF1486; KEGG: ara:Arad_4441 hypothetical protein; hypothetical protein complement(243615..244031) Variovorax paradoxus S110 7975397 YP_002947400.1 CDS Vapar_5541 NC_012792.1 244176 245072 D PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: xca:xccb100_4119 transcriptional regulator, AraC family; AraC family transcriptional regulator 244176..245072 Variovorax paradoxus S110 7975398 YP_002947401.1 CDS Vapar_5542 NC_012792.1 245223 247283 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(245223..247283) Variovorax paradoxus S110 7975399 YP_002947402.1 CDS Vapar_5543 NC_012792.1 247411 247764 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bml:BMA10229_A2384 hypothetical protein; glutathione-dependent formaldehyde-activating GFA complement(247411..247764) Variovorax paradoxus S110 7975400 YP_002947403.1 CDS Vapar_5544 NC_012792.1 247871 248686 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:bll6055 putative oxidoreductase; short-chain dehydrogenase/reductase SDR complement(247871..248686) Variovorax paradoxus S110 7975401 YP_002947404.1 CDS Vapar_5545 NC_012792.1 248720 250321 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dds:Ddes_2170 L-lactate transport; L-lactate transport complement(248720..250321) Variovorax paradoxus S110 7975402 YP_002947405.1 CDS Vapar_5546 NC_012792.1 250401 250718 R PFAM: NIPSNAP family containing protein; KEGG: dac:Daci_0041 NIPSNAP family protein; NIPSNAP family containing protein complement(250401..250718) Variovorax paradoxus S110 7975403 YP_002947406.1 CDS Vapar_5547 NC_012792.1 250769 251746 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein complement(250769..251746) Variovorax paradoxus S110 7975404 YP_002947407.1 CDS Vapar_5548 NC_012792.1 251781 253487 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: oan:Oant_1410 thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein domain protein TPP-binding complement(251781..253487) Variovorax paradoxus S110 7975405 YP_002947408.1 CDS Vapar_5549 NC_012792.1 253602 254489 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bba:Bd2916 putative transcriptional regulator; AraC family transcriptional regulator complement(253602..254489) Variovorax paradoxus S110 7975406 YP_002947409.1 CDS Vapar_5550 NC_012792.1 254593 255120 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pol:Bpro_2350 transcriptional regulator, MarR family; transcriptional regulator, MarR family complement(254593..255120) Variovorax paradoxus S110 7975407 YP_002947410.1 CDS Vapar_5551 NC_012792.1 255232 256032 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_2349 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 255232..256032 Variovorax paradoxus S110 7975408 YP_002947411.1 CDS Vapar_5552 NC_012792.1 256096 257172 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pol:Bpro_2348 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 256096..257172 Variovorax paradoxus S110 7975409 YP_002947412.1 CDS Vapar_5554 NC_012792.1 257352 257894 R KEGG: bcn:Bcen_5567 hypothetical protein; hypothetical protein complement(257352..257894) Variovorax paradoxus S110 7975411 YP_002947413.1 CDS Vapar_5555 NC_012792.1 257943 258335 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B4070 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase complement(257943..258335) Variovorax paradoxus S110 7975412 YP_002947414.1 CDS Vapar_5556 NC_012792.1 258415 259182 D PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bsu:BSU38910 hypothetical protein; two component transcriptional regulator, LuxR family 258415..259182 Variovorax paradoxus S110 7975413 YP_002947415.1 CDS Vapar_5557 NC_012792.1 259202 260554 R PFAM: major facilitator superfamily MFS_1; KEGG: mms:mma_3473 major facilitator superfamily oxalate/formate antiporter; major facilitator superfamily MFS_1 complement(259202..260554) Variovorax paradoxus S110 7975414 YP_002947416.1 CDS Vapar_5558 NC_012792.1 260736 262598 D KEGG: afw:Anae109_1809 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase 260736..262598 Variovorax paradoxus S110 7975415 YP_002947417.1 CDS Vapar_5559 NC_012792.1 262802 263236 D KEGG: xca:xccb100_1512 putative secreted protein; hypothetical protein 262802..263236 Variovorax paradoxus S110 7975416 YP_002947418.1 CDS Vapar_5560 NC_012792.1 263966 271156 D PFAM: YadA domain protein; Hep_Hag repeat-containing protein; Haemagluttinin domain protein; KEGG: ara:Arad_7994 outer membrane pathogenesis protein; YadA domain protein 263966..271156 Variovorax paradoxus S110 7975417 YP_002947419.1 CDS Vapar_5561 NC_012792.1 271187 272017 D PFAM: OmpA/MotB domain protein; SmpA/OmlA domain protein; KEGG: reu:Reut_B5847 OmpA/MotB:SmpA/OmlA; OmpA/MotB domain protein 271187..272017 Variovorax paradoxus S110 7975418 YP_002947420.1 CDS Vapar_5562 NC_012792.1 272041 272148 R hypothetical protein complement(272041..272148) Variovorax paradoxus S110 7975419 YP_002947421.1 CDS Vapar_5563 NC_012792.1 272520 273185 D hypothetical protein 272520..273185 Variovorax paradoxus S110 7975420 YP_002947422.1 CDS Vapar_5564 NC_012792.1 273208 273957 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: tmz:Tmz1t_1763 transcriptional regulator, Crp/Fnr family; transcriptional regulator, Crp/Fnr family 273208..273957 Variovorax paradoxus S110 7975421 YP_002947423.1 CDS Vapar_5565 NC_012792.1 274519 275736 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: pol:Bpro_4589 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase NPD 274519..275736 Variovorax paradoxus S110 7975422 YP_002947424.1 CDS Vapar_5566 NC_012792.1 275773 276666 R PFAM: beta-lactamase domain protein; KEGG: mpt:Mpe_A2720 metallo-beta-lactamase superfamily protein; beta-lactamase domain protein complement(275773..276666) Variovorax paradoxus S110 7975423 YP_002947425.1 CDS Vapar_5567 NC_012792.1 276736 277065 D PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: pol:Bpro_4845 transcriptional regulator, ArsR family; transcriptional regulator, ArsR family 276736..277065 Variovorax paradoxus S110 7975424 YP_002947426.1 CDS Vapar_5568 NC_012792.1 277068 277502 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pol:Bpro_4846 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 277068..277502 Variovorax paradoxus S110 7975425 YP_002947427.1 CDS Vapar_5569 NC_012792.1 277514 277996 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mpt:Mpe_A2717 putative transmembrane protein; hypothetical protein 277514..277996 Variovorax paradoxus S110 7975426 YP_002947428.1 CDS Vapar_5570 NC_012792.1 278006 278455 D hypothetical protein 278006..278455 Variovorax paradoxus S110 7975427 YP_002947429.1 CDS Vapar_5571 NC_012792.1 278595 279179 D PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: rso:RSc3142 putative transport transmembrane protein; phosphoesterase PA-phosphatase related 278595..279179 Variovorax paradoxus S110 7975428 YP_002947430.1 CDS Vapar_5572 NC_012792.1 279176 280198 D PFAM: glycosyl transferase family 2; KEGG: bbr:BB4269 putative glycosyl transferase; glycosyl transferase family 2 279176..280198 Variovorax paradoxus S110 7975184 YP_002947431.1 CDS Vapar_5573 NC_012792.1 280195 281808 D PFAM: glycosyl transferase family 39; KEGG: dar:Daro_2758 glycosyl transferase family protein; glycosyl transferase family 39 280195..281808 Variovorax paradoxus S110 7975185 YP_002947432.1 CDS Vapar_5574 NC_012792.1 281801 282682 D PFAM: YdjC family protein; KEGG: dar:Daro_2756 hypothetical protein; YdjC family protein 281801..282682 Variovorax paradoxus S110 7975186 YP_002947433.1 CDS Vapar_5575 NC_012792.1 282731 283495 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: dac:Daci_2782 Crp/FNR family transcriptional regulator; transcriptional regulator, Crp/Fnr family complement(282731..283495) Variovorax paradoxus S110 7975187 YP_002947434.1 CDS Vapar_5576 NC_012792.1 283708 284217 D PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: nme:NMB1573 ornithine carbamoyltransferase; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain protein 283708..284217 Variovorax paradoxus S110 7975188 YP_002947435.1 CDS Vapar_5577 NC_012792.1 284502 284924 R PFAM: UspA domain protein; KEGG: mpt:Mpe_A3700 hypothetical protein; UspA domain protein complement(284502..284924) Variovorax paradoxus S110 7975189 YP_002947436.1 CDS Vapar_5578 NC_012792.1 285037 285690 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: rfr:Rfer_0390 transport-associated; transport-associated 285037..285690 Variovorax paradoxus S110 7975190 YP_002947437.1 CDS Vapar_5579 NC_012792.1 285815 286561 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: mno:Mnod_6165 two component transcriptional regulator, winged helix family; two component transcriptional regulator, winged helix family 285815..286561 Variovorax paradoxus S110 7975191 YP_002947438.1 CDS Vapar_5580 NC_012792.1 286566 288665 D KEGG: acr:Acry_0578 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; multi-sensor hybrid histidine kinase 286566..288665 Variovorax paradoxus S110 7975192 YP_002947439.1 CDS Vapar_5581 NC_012792.1 288770 289117 D TIGRFAM: prevent-host-death family protein; KEGG: pol:Bpro_2514 prevent-host-death protein; prevent-host-death family protein 288770..289117 Variovorax paradoxus S110 7975193 YP_002947440.1 CDS Vapar_5582 NC_012792.1 289117 289764 D KEGG: pol:Bpro_2513 hypothetical protein; hypothetical protein 289117..289764 Variovorax paradoxus S110 7975194 YP_002947441.1 CDS Vapar_5583 NC_012792.1 290129 291028 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: lch:Lcho_0720 LysR family transcriptional regulator; LysR family transcriptional regulator 290129..291028 Variovorax paradoxus S110 7975195 YP_002947442.1 CDS Vapar_5584 NC_012792.1 291164 292177 D PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4610 hypothetical protein; hypothetical protein 291164..292177 Variovorax paradoxus S110 7975196 YP_002947443.1 CDS Vapar_5585 NC_012792.1 292226 292915 D PFAM: Dimethylmenaquinone methyltransferase; KEGG: reh:H16_B0348 demethylmenaquinone methyltransferase; Dimethylmenaquinone methyltransferase 292226..292915 Variovorax paradoxus S110 7975197 YP_002947444.1 CDS Vapar_5586 NC_012792.1 292912 293841 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dac:Daci_4276 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding 292912..293841 Variovorax paradoxus S110 7975198 YP_002947445.1 CDS Vapar_5587 NC_012792.1 293999 295129 D PFAM: Saccharopine dehydrogenase; KEGG: pol:Bpro_4331 saccharopine dehydrogenase; Saccharopine dehydrogenase 293999..295129 Variovorax paradoxus S110 7975199 YP_002947446.1 CDS Vapar_5588 NC_012792.1 295227 296978 D PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: oan:Oant_4081 thiamine pyrophosphate protein central region; thiamine pyrophosphate protein central region 295227..296978 Variovorax paradoxus S110 7975200 YP_002947447.1 CDS Vapar_5589 NC_012792.1 297040 298296 D PFAM: FAD dependent oxidoreductase; KEGG: bra:BRADO3486 putative D-amino-acid dehydrogenase, FAD dependent; D-amino-acid dehydrogenase 297040..298296 Variovorax paradoxus S110 7975201 YP_002947448.1 CDS Vapar_5590 NC_012792.1 298534 299367 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bja:blr8117 ABC transporter substrate-binding protein; extracellular solute-binding protein family 3 298534..299367 Variovorax paradoxus S110 7975202 YP_002947449.1 CDS Vapar_5591 NC_012792.1 299377 300171 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_0817 ABC transporter permease protein; polar amino acid ABC transporter, inner membrane subunit 299377..300171 Variovorax paradoxus S110 7975203 YP_002947450.1 CDS Vapar_5592 NC_012792.1 300173 300973 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr8119 ABC transporter ATP-binding protein; ABC transporter 300173..300973 Variovorax paradoxus S110 7975204 YP_002947451.1 CDS Vapar_5593 NC_012792.1 300973 301359 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: glutathione-dependent formaldehyde-activating, GFA family protein; glutathione-dependent formaldehyde-activating GFA 300973..301359 Variovorax paradoxus S110 7975205 YP_002947452.1 CDS Vapar_5594 NC_012792.1 301397 301858 D PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: pol:Bpro_4332 transcriptional regulator, AsnC family; transcriptional regulator, AsnC family 301397..301858 Variovorax paradoxus S110 7975206 YP_002947453.1 CDS Vapar_5595 NC_012792.1 301872 302549 D KEGG: bja:bll6811 hypothetical protein; hypothetical protein 301872..302549 Variovorax paradoxus S110 7975207 YP_002947454.1 CDS Vapar_5596 NC_012792.1 302551 303477 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bur:Bcep18194_A5274 LysR family transcriptional regulator; LysR family transcriptional regulator complement(302551..303477) Variovorax paradoxus S110 7975208 YP_002947455.1 CDS Vapar_5597 NC_012792.1 303614 304021 D PFAM: Endoribonuclease L-PSP; KEGG: smt:Smal_3954 endoribonuclease L-PSP; Endoribonuclease L-PSP 303614..304021 Variovorax paradoxus S110 7975209 YP_002947456.1 CDS Vapar_5598 NC_012792.1 303978 304748 R PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: swi:Swit_1150 GntR family transcriptional regulator; GntR family transcriptional regulator complement(303978..304748) Variovorax paradoxus S110 7975210 YP_002947457.1 CDS Vapar_5599 NC_012792.1 304842 305528 D KEGG: ect:ECIAI39_0669 putative demethylmenaquinone methyltransferase; putative demethylmenaquinone methyltransferase 304842..305528 Variovorax paradoxus S110 7975211 YP_002947458.1 CDS Vapar_5600 NC_012792.1 305563 306249 R PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: vei:Veis_0726 GntR family transcriptional regulator; GntR family transcriptional regulator complement(305563..306249) Variovorax paradoxus S110 7975212 YP_002947459.1 CDS Vapar_5601 NC_012792.1 306324 307778 R catalyzes the hydrolytic cleavage of imides that range from linear to heterocyclic and that include hydantoins, dihydropyrimidines, and phthalimides; dihydropyrimidinase complement(306324..307778) Variovorax paradoxus S110 7975213 YP_002947460.1 CDS Vapar_5602 NC_012792.1 307792 308517 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0724 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter, inner membrane subunit complement(307792..308517) Variovorax paradoxus S110 7975214 YP_002947461.1 CDS Vapar_5603 NC_012792.1 308563 309393 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: vei:Veis_0723 extracellular solute-binding protein; extracellular solute-binding protein family 3 complement(308563..309393) Variovorax paradoxus S110 7975215 YP_002947462.1 CDS Vapar_5604 NC_012792.1 309446 310342 R TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: vei:Veis_0722 dihydrodipicolinate synthase; dihydrodipicolinate synthase complement(309446..310342) Variovorax paradoxus S110 7975216 YP_002947463.1 CDS Vapar_5605 NC_012792.1 310443 313397 D PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; HI0933 family protein; KEGG: vei:Veis_0721 FAD dependent oxidoreductase; FAD dependent oxidoreductase 310443..313397 Variovorax paradoxus S110 7975217 YP_002947464.1 CDS Vapar_5606 NC_012792.1 313407 314675 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: vei:Veis_0720 peptidase M20; peptidase M20 313407..314675 Variovorax paradoxus S110 7975218 YP_002947465.1 CDS Vapar_5607 NC_012792.1 314672 315406 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0719 ABC transporter related; ABC transporter 314672..315406 Variovorax paradoxus S110 7975219 YP_002947466.1 CDS Vapar_5608 NC_012792.1 315648 316373 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aav:Aave_2178 HAD family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) 315648..316373 Variovorax paradoxus S110 7975220 YP_002947467.1 CDS Vapar_5609 NC_012792.1 316346 317101 R PFAM: protein of unknown function DUF81; KEGG: vei:Veis_2505 hypothetical protein; hypothetical protein complement(316346..317101) Variovorax paradoxus S110 7975221 YP_002947468.1 CDS Vapar_5610 NC_012792.1 317180 318181 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_2507 hypothetical protein; hypothetical protein complement(317180..318181) Variovorax paradoxus S110 7975222 YP_002947469.1 CDS Vapar_5611 NC_012792.1 318308 319210 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_2508 LysR family transcriptional regulator; LysR family transcriptional regulator complement(318308..319210) Variovorax paradoxus S110 7975223 YP_002947470.1 CDS Vapar_5612 NC_012792.1 319261 320094 R PFAM: amidohydrolase 2; KEGG: mno:Mnod_8667 amidohydrolase 2; amidohydrolase 2 complement(319261..320094) Variovorax paradoxus S110 7975224 YP_002947471.1 CDS Vapar_5613 NC_012792.1 320161 320841 R PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: vei:Veis_2510 Fe-S type hydro-lyases tartrate/fumarate beta region; Fe-S type hydro-lyase tartrate/fumarate beta region complement(320161..320841) Variovorax paradoxus S110 7975225 YP_002947472.1 CDS Vapar_5614 NC_012792.1 320835 321770 R KEGG: vei:Veis_2511 tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit complement(320835..321770) Variovorax paradoxus S110 7975226 YP_002947473.1 CDS Vapar_5615 NC_012792.1 321783 323522 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: vei:Veis_2512 succinate dehydrogenase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein complement(321783..323522) Variovorax paradoxus S110 7975227 YP_002947474.1 CDS Vapar_5616 NC_012792.1 323524 323868 R KEGG: vei:Veis_2513 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit complement(323524..323868) Variovorax paradoxus S110 7975228 YP_002947475.1 CDS Vapar_5617 NC_012792.1 323865 324200 R KEGG: vei:Veis_2514 hypothetical protein; hypothetical protein complement(323865..324200) Variovorax paradoxus S110 7975229 YP_002947476.1 CDS Vapar_5618 NC_012792.1 324202 324936 R TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: vei:Veis_2515 succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(324202..324936) Variovorax paradoxus S110 7975230 YP_002947477.1 CDS Vapar_5619 NC_012792.1 325264 325554 D KEGG: mpt:Mpe_A1667 hypothetical protein; hypothetical protein 325264..325554 Variovorax paradoxus S110 7975231 YP_002947478.1 CDS Vapar_5620 NC_012792.1 325551 325871 D PFAM: plasmid stabilization system; KEGG: mpt:Mpe_A1668 hypothetical protein; plasmid stabilization system 325551..325871 Variovorax paradoxus S110 7975232 YP_002947479.1 CDS Vapar_5621 NC_012792.1 325991 326623 D KEGG: pol:Bpro_1821 putative transmembrane protein; putative transmembrane protein 325991..326623 Variovorax paradoxus S110 7975233 YP_002947480.1 CDS Vapar_5622 NC_012792.1 326696 327595 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bja:bll3228 hypothetical protein; LysR family transcriptional regulator complement(326696..327595) Variovorax paradoxus S110 7975234 YP_002947481.1 CDS Vapar_5623 NC_012792.1 327638 329116 D PFAM: Amidase; KEGG: bja:blr3229 putative glutamyl-tRNA(Gln) amidotransferase subunit; Amidase 327638..329116 Variovorax paradoxus S110 7975235 YP_002947482.1 CDS Vapar_5624 NC_012792.1 329160 330125 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B1846 probable extra-cytoplasmic solute receptor; hypothetical protein 329160..330125 Variovorax paradoxus S110 7975236 YP_002947483.1 CDS Vapar_5625 NC_012792.1 330137 331585 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_2315 EmrB/QacA family drug resistance transporter; drug resistance transporter, EmrB/QacA subfamily 330137..331585 Variovorax paradoxus S110 7975237 YP_002947484.1 CDS Vapar_5626 NC_012792.1 331604 332047 R PFAM: protein of unknown function DUF1486; KEGG: aba:Acid345_3974 protein of unknown function DUF1486; hypothetical protein complement(331604..332047) Variovorax paradoxus S110 7975238 YP_002947485.1 CDS Vapar_5627 NC_012792.1 332154 332924 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: acp:A2cp1_0575 transcriptional regulator, AraC family; AraC family transcriptional regulator 332154..332924 Variovorax paradoxus S110 7975239 YP_002947486.1 CDS Vapar_5628 NC_012792.1 332949 333443 R PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: aav:Aave_2180 AsnC family transcriptional regulator; transcriptional regulator, AsnC family complement(332949..333443) Variovorax paradoxus S110 7975240 YP_002947487.1 CDS Vapar_5629 NC_012792.1 333515 334918 R PFAM: aminotransferase class-III; KEGG: aav:Aave_2181 hypothetical protein; hypothetical protein complement(333515..334918) Variovorax paradoxus S110 7975241 YP_002947488.1 CDS Vapar_5630 NC_012792.1 335082 336014 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pol:Bpro_0053 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding complement(335082..336014) Variovorax paradoxus S110 7975242 YP_002947489.1 CDS Vapar_5631 NC_012792.1 336319 337197 R PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_2184 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase complement(336319..337197) Variovorax paradoxus S110 7975243 YP_002947490.1 CDS Vapar_5632 NC_012792.1 337699 338364 D TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aav:Aave_2185 haloacid dehalogenase, type II; haloacid dehalogenase, type II 337699..338364 Variovorax paradoxus S110 7975244 YP_002947491.1 CDS Vapar_5633 NC_012792.1 338397 339689 D PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_2186 FAD dependent oxidoreductase; FAD dependent oxidoreductase 338397..339689 Variovorax paradoxus S110 7975245 YP_002947492.1 CDS Vapar_5634 NC_012792.1 339775 341397 D PFAM: extracellular solute-binding protein family 5; KEGG: aav:Aave_2187 extracellular solute-binding protein; extracellular solute-binding protein family 5 339775..341397 Variovorax paradoxus S110 7975246 YP_002947493.1 CDS Vapar_5635 NC_012792.1 341556 342512 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_2188 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 341556..342512 Variovorax paradoxus S110 7975247 YP_002947494.1 CDS Vapar_5636 NC_012792.1 342523 343428 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_2189 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 342523..343428 Variovorax paradoxus S110 7975248 YP_002947495.1 CDS Vapar_5637 NC_012792.1 343428 345080 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_2190 ABC transporter-related protein; ABC transporter 343428..345080 Variovorax paradoxus S110 7975249 YP_002947496.1 CDS Vapar_5638 NC_012792.1 345077 346165 D KEGG: aav:Aave_2191 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 345077..346165 Variovorax paradoxus S110 7975250 YP_002947497.1 CDS Vapar_5639 NC_012792.1 346196 347674 D KEGG: dac:Daci_2346 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; succinic semialdehyde dehydrogenase 346196..347674 Variovorax paradoxus S110 7975251 YP_002947498.1 CDS Vapar_5640 NC_012792.1 347764 348768 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: pol:Bpro_4804 transcriptional regulator, MerR family; transcriptional regulator, MerR family 347764..348768 Variovorax paradoxus S110 7975252 YP_002947499.1 CDS Vapar_5641 NC_012792.1 348827 349267 D PFAM: NUDIX hydrolase; KEGG: bmj:BMULJ_01330 putative NTP pyrophosphohydrolase; NUDIX hydrolase 348827..349267 Variovorax paradoxus S110 7975253 YP_002947500.1 CDS Vapar_5642 NC_012792.1 349296 349835 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: bpy:Bphyt_6168 cupin 2 conserved barrel domain protein; Cupin 2 conserved barrel domain protein complement(349296..349835) Variovorax paradoxus S110 7975254 YP_002947501.1 CDS Vapar_5643 NC_012792.1 349832 350581 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: bpy:Bphyt_6169 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(349832..350581) Variovorax paradoxus S110 7975255 YP_002947502.1 CDS Vapar_5644 NC_012792.1 350669 352114 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: pfl:PFL_2191 GntR family transcriptional regulator; GntR family transcriptional regulator 350669..352114 Variovorax paradoxus S110 7975256 YP_002947503.1 CDS Vapar_5645 NC_012792.1 352172 352930 D KEGG: amc:MADE_03122 hypothetical protein; hypothetical protein 352172..352930 Variovorax paradoxus S110 7975257 YP_002947504.1 CDS Vapar_5646 NC_012792.1 352984 353262 D hypothetical protein 352984..353262 Variovorax paradoxus S110 7975258 YP_002947505.1 CDS Vapar_5647 NC_012792.1 353324 354472 R hypothetical protein complement(353324..354472) Variovorax paradoxus S110 7975259 YP_002947506.1 CDS Vapar_5648 NC_012792.1 354596 355213 D KEGG: dac:Daci_0083 hypothetical protein; hypothetical protein 354596..355213 Variovorax paradoxus S110 7975260 YP_002947507.1 CDS Vapar_5649 NC_012792.1 355210 355902 D PFAM: Domain of unknown function DUF1814; KEGG: dac:Daci_0082 hypothetical protein; hypothetical protein 355210..355902 Variovorax paradoxus S110 7975261 YP_002947508.1 CDS Vapar_5650 NC_012792.1 355918 356829 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_5108 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(355918..356829) Variovorax paradoxus S110 7975262 YP_002947509.1 CDS Vapar_5651 NC_012792.1 356952 358115 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet2879 acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F 356952..358115 Variovorax paradoxus S110 7975263 YP_002947510.1 CDS Vapar_5652 NC_012792.1 358162 359082 D PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: azc:AZC_1414 dioxygenase; Hydroxyquinol 1,2-dioxygenase 358162..359082 Variovorax paradoxus S110 7975264 YP_002947511.1 CDS Vapar_5653 NC_012792.1 359095 359901 D KEGG: bpt:Bpet2878 citrate synthase; citrate synthase 359095..359901 Variovorax paradoxus S110 7975265 YP_002947512.1 CDS Vapar_5654 NC_012792.1 359940 360866 D PFAM: conserved hypothetical protein; KEGG: bpt:Bpet2877 putative secreted protein; hypothetical protein 359940..360866 Variovorax paradoxus S110 7975699 YP_002947513.1 CDS Vapar_5655 NC_012792.1 360919 361905 D PFAM: conserved hypothetical protein; KEGG: cti:RALTA_B0411 conserved hypothetical protein; putative exported protein; hypothetical protein 360919..361905 Variovorax paradoxus S110 7975708 YP_002947514.1 CDS Vapar_5656 NC_012792.1 361957 362766 D PFAM: DNA polymerase beta domain protein region; KEGG: eum:ECUMN_4816 streptomycin 3''-adenylyltransferase; 3''-adenylyltransferase 361957..362766 Variovorax paradoxus S110 7975709 YP_002947515.1 CDS Vapar_5657 NC_012792.1 362830 363690 D PFAM: NmrA family protein; TrkA-N domain protein; KEGG: smd:Smed_5710 NmrA family protein; NmrA family protein 362830..363690 Variovorax paradoxus S110 7975710 YP_002947516.1 CDS Vapar_5658 NC_012792.1 363719 365509 R KEGG: dia:Dtpsy_2905 alkaline phosphatase; Alkaline phosphatase complement(363719..365509) Variovorax paradoxus S110 7975711 YP_002947517.1 CDS Vapar_5659 NC_012792.1 365728 366393 R PFAM: regulatory protein TetR; KEGG: pst:PSPTO_4274 TetR family transcriptional regulator; TetR family transcriptional regulator complement(365728..366393) Variovorax paradoxus S110 7975712 YP_002947518.1 CDS Vapar_5661 NC_012792.1 367392 368336 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: nwi:Nwi_0615 LysR family transcriptional regulator; LysR family transcriptional regulator 367392..368336 Variovorax paradoxus S110 7975714 YP_002947519.1 CDS Vapar_5662 NC_012792.1 368426 370195 D PFAM: Carboxylesterase type B; KEGG: cak:Caul_4013 carboxylesterase type B; Carboxylesterase type B 368426..370195 Variovorax paradoxus S110 7975715 YP_002947520.1 CDS Vapar_5663 NC_012792.1 370213 371214 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sus:Acid_5197 AraC family transcriptional regulator; AraC family transcriptional regulator complement(370213..371214) Variovorax paradoxus S110 7975716 YP_002947521.1 CDS Vapar_5664 NC_012792.1 371302 372075 D PFAM: protein of unknown function DUF1486; KEGG: mlo:mll8193 hypothetical protein; hypothetical protein 371302..372075 Variovorax paradoxus S110 7975717 YP_002947522.1 CDS Vapar_5665 NC_012792.1 372208 372678 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pna:Pnap_0377 XRE family transcriptional regulator; XRE family transcriptional regulator 372208..372678 Variovorax paradoxus S110 7975718 YP_002947523.1 CDS Vapar_5666 NC_012792.1 372671 373405 D PFAM: Domain of unknown function DUF1814; KEGG: mpt:Mpe_A0784 hypothetical protein; hypothetical protein 372671..373405 Variovorax paradoxus S110 7975719 YP_002947524.1 CDS Vapar_5667 NC_012792.1 373425 375293 R PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: rpb:RPB_2685 TrapT DctQ-M fusion permease, dicarboxylate transport; TRAP C4-dicarboxylate transport system permease DctM subunit complement(373425..375293) Variovorax paradoxus S110 7975720 YP_002947525.1 CDS Vapar_5668 NC_012792.1 375290 376303 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpe:RPE_2876 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter, DctP subunit complement(375290..376303) Variovorax paradoxus S110 7975721 YP_002947526.1 CDS Vapar_5669 NC_012792.1 376367 377956 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(376367..377956) Variovorax paradoxus S110 7975722 YP_002947527.1 CDS Vapar_5670 NC_012792.1 377953 379122 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(377953..379122) Variovorax paradoxus S110 7975723 YP_002947528.1 CDS Vapar_5671 NC_012792.1 379139 379954 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: vei:Veis_4817 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(379139..379954) Variovorax paradoxus S110 7975724 YP_002947529.1 CDS Vapar_5672 NC_012792.1 379982 380383 R KEGG: mno:Mnod_3072 hypothetical protein; hypothetical protein complement(379982..380383) Variovorax paradoxus S110 7975725 YP_002947530.1 CDS Vapar_5673 NC_012792.1 380376 380927 R KEGG: mno:Mnod_3073 hypothetical protein; hypothetical protein complement(380376..380927) Variovorax paradoxus S110 7975726 YP_002947531.1 CDS Vapar_5674 NC_012792.1 381046 381930 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: scl:sce1423 LysR family transcriptional regulator; LysR family transcriptional regulator 381046..381930 Variovorax paradoxus S110 7975727 YP_002947532.1 CDS Vapar_5675 NC_012792.1 381937 382863 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_1392 LysR family transcriptional regulator; LysR family transcriptional regulator complement(381937..382863) Variovorax paradoxus S110 7975728 YP_002947533.1 CDS Vapar_5676 NC_012792.1 382976 383914 D PFAM: dihydrodipicolinate synthetase; KEGG: dac:Daci_3342 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 382976..383914 Variovorax paradoxus S110 7975729 YP_002947534.1 CDS Vapar_5677 NC_012792.1 383972 384943 D PFAM: conserved hypothetical protein; KEGG: dac:Daci_3341 hypothetical protein; hypothetical protein 383972..384943 Variovorax paradoxus S110 7975730 YP_002947535.1 CDS Vapar_5678 NC_012792.1 384933 385640 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: aav:Aave_1396 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 384933..385640 Variovorax paradoxus S110 7975731 YP_002947536.1 CDS Vapar_5679 NC_012792.1 385670 386836 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: dac:Daci_3339 mandelate racemase/muconate lactonizing protein; Mandelate racemase/muconate lactonizing protein 385670..386836 Variovorax paradoxus S110 7975732 YP_002947537.1 CDS Vapar_5680 NC_012792.1 387098 390025 D TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: reh:H16_B2108 two domain protein: VgrG and COG4253; type VI secretion system Vgr family protein 387098..390025 Variovorax paradoxus S110 7975733 YP_002947538.1 CDS Vapar_5681 NC_012792.1 390078 394907 D PFAM: RHS protein; YD repeat-containing protein; KEGG: reh:H16_B2107 rhs family protein; RHS protein 390078..394907 Variovorax paradoxus S110 7975734 YP_002947539.1 CDS Vapar_5682 NC_012792.1 394904 395347 D KEGG: pen:PSEEN4580 hypothetical protein; hypothetical protein 394904..395347 Variovorax paradoxus S110 7975735 YP_002947540.1 CDS Vapar_5684 NC_012792.1 398114 398401 R KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein complement(398114..398401) Variovorax paradoxus S110 7975737 YP_002947541.1 CDS Vapar_5685 NC_012792.1 398432 398938 R PFAM: blue (type 1) copper domain protein; KEGG: pna:Pnap_4551 blue (type1) copper domain-containing protein; blue (type 1) copper domain protein complement(398432..398938) Variovorax paradoxus S110 7975738 YP_002947542.1 CDS Vapar_5686 NC_012792.1 398997 400412 R PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase type 3 complement(398997..400412) Variovorax paradoxus S110 7975739 YP_002947543.1 CDS Vapar_5687 NC_012792.1 400450 401877 R KEGG: pol:Bpro_3484 putative copper resistance-related lipoprotein; putative copper resistance-related lipoprotein complement(400450..401877) Variovorax paradoxus S110 7975740 YP_002947544.1 CDS Vapar_5688 NC_012792.1 401874 402224 R KEGG: pna:Pnap_4554 hypothetical protein; hypothetical protein complement(401874..402224) Variovorax paradoxus S110 7975741 YP_002947545.1 CDS Vapar_5689 NC_012792.1 402342 402503 R hypothetical protein complement(402342..402503) Variovorax paradoxus S110 7975742 YP_002947546.1 CDS Vapar_5690 NC_012792.1 402913 404433 R PFAM: Aldehyde Dehydrogenase; KEGG: pna:Pnap_3013 aldehyde dehydrogenase; Aldehyde dehydrogenase (NAD(+)) complement(402913..404433) Variovorax paradoxus S110 7975743 YP_002947547.1 CDS Vapar_5691 NC_012792.1 404784 406322 D KEGG: har:HEAR1734 GGDEF domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 404784..406322 Variovorax paradoxus S110 7975744 YP_002947548.1 CDS Vapar_5692 NC_012792.1 406512 407849 D PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: dac:Daci_3815 major facilitator transporter; major facilitator superfamily MFS_1 406512..407849 Variovorax paradoxus S110 7975745 YP_002947549.1 CDS Vapar_5693 NC_012792.1 407894 408952 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: pna:Pnap_2725 Rieske (2Fe-2S) domain-containing protein; Rieske (2Fe-2S) domain protein 407894..408952 Variovorax paradoxus S110 7975746 YP_002947550.1 CDS Vapar_5694 NC_012792.1 408949 409914 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pna:Pnap_2724 ferredoxin; Phthalate 4,5-dioxygenase 408949..409914 Variovorax paradoxus S110 7975747 YP_002947551.1 CDS Vapar_5695 NC_012792.1 409994 410461 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bvi:Bcep1808_3497 MarR family transcriptional regulator; transcriptional regulator, MarR family 409994..410461 Variovorax paradoxus S110 7975748 YP_002947552.1 CDS Vapar_5696 NC_012792.1 410484 411263 R PFAM: protein of unknown function DUF81; KEGG: dac:Daci_0936 putative integral membrane protein; hypothetical protein complement(410484..411263) Variovorax paradoxus S110 7975749 YP_002947553.1 CDS Vapar_5697 NC_012792.1 411379 413142 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(411379..413142) Variovorax paradoxus S110 7975750 YP_002947554.1 CDS Vapar_5698 NC_012792.1 413169 413987 R PFAM: HpcH/HpaI aldolase; KEGG: aav:Aave_4270 2-dehydro-3-deoxyglucarate aldolase; 4-hydroxy-2-oxovalerate aldolase complement(413169..413987) Variovorax paradoxus S110 7975751 YP_002947555.1 CDS Vapar_5699 NC_012792.1 414008 414991 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4214 hypothetical protein; hypothetical protein complement(414008..414991) Variovorax paradoxus S110 7975752 YP_002947556.1 CDS Vapar_5700 NC_012792.1 415016 415819 R PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: mno:Mnod_3753 shikimate dehydrogenase substrate binding domain protein; Shikimate dehydrogenase substrate binding domain protein complement(415016..415819) Variovorax paradoxus S110 7975753 YP_002947557.1 CDS Vapar_5701 NC_012792.1 415824 416660 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2612 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(415824..416660) Variovorax paradoxus S110 7975754 YP_002947558.1 CDS Vapar_5702 NC_012792.1 416657 417559 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll2730 ABC transporter permease; binding-protein-dependent transport systems inner membrane component complement(416657..417559) Variovorax paradoxus S110 7975755 YP_002947559.1 CDS Vapar_5703 NC_012792.1 417588 418955 R PFAM: extracellular solute-binding protein family 1; KEGG: bbt:BBta_1756 ABC transporter substrate-binding protein; extracellular solute-binding protein family 1 complement(417588..418955) Variovorax paradoxus S110 7975756 YP_002947560.1 CDS Vapar_5704 NC_012792.1 419120 419884 D PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mlo:mll7194 transcriptional regulator; GntR family transcriptional regulator 419120..419884 Variovorax paradoxus S110 7975757 YP_002947561.1 CDS Vapar_5705 NC_012792.1 419916 421016 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rce:RC1_3732 maltose; ABC transporter 419916..421016 Variovorax paradoxus S110 7975758 YP_002947562.1 CDS Vapar_5707 NC_012792.1 421546 421818 R TIGRFAM: prevent-host-death family protein; KEGG: cak:Caul_5354 prevent-host-death family protein; prevent-host-death family protein complement(421546..421818) Variovorax paradoxus S110 7975760 YP_002947563.1 CDS Vapar_5708 NC_012792.1 422131 423609 D PFAM: peptidase domain protein; KEGG: rde:RD1_1585 VCBS repeat domain protein; peptidase domain protein 422131..423609 Variovorax paradoxus S110 7975761 YP_002947564.1 CDS Vapar_5709 NC_012792.1 423713 424696 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_3406 hypothetical protein; hypothetical protein complement(423713..424696) Variovorax paradoxus S110 7975762 YP_002947565.1 CDS Vapar_5710 NC_012792.1 424743 425453 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: vei:Veis_3405 hypothetical protein; hypothetical protein complement(424743..425453) Variovorax paradoxus S110 7975763 YP_002947566.1 CDS Vapar_5711 NC_012792.1 425474 427201 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(425474..427201) Variovorax paradoxus S110 7975764 YP_002947567.1 CDS Vapar_5712 NC_012792.1 427284 427979 D PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ajs:Ajs_1127 GntR family transcriptional regulator; GntR family transcriptional regulator 427284..427979 Variovorax paradoxus S110 7975765 YP_002947568.1 CDS Vapar_5713 NC_012792.1 428030 428599 D PFAM: flavin reductase domain protein FMN-binding; KEGG: rpt:Rpal_2510 flavin reductase domain protein FMN-binding; flavin reductase domain protein FMN-binding 428030..428599 Variovorax paradoxus S110 7975766 YP_002947569.1 CDS Vapar_5714 NC_012792.1 428642 429664 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: azc:AZC_1888 putative NADPH:quinone reductase; Alcohol dehydrogenase zinc-binding domain protein complement(428642..429664) Variovorax paradoxus S110 7975767 YP_002947570.1 CDS Vapar_5715 NC_012792.1 429664 430242 R PFAM: protein of unknown function DUF1185; KEGG: bav:BAV1032 hypothetical protein; hypothetical protein complement(429664..430242) Variovorax paradoxus S110 7975768 YP_002947571.1 CDS Vapar_5716 NC_012792.1 430253 431257 R PFAM: conserved hypothetical protein; KEGG: bja:blr3080 hypothetical protein; hypothetical protein complement(430253..431257) Variovorax paradoxus S110 7975769 YP_002947572.1 CDS Vapar_5717 NC_012792.1 431325 432188 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: azc:AZC_1883 fumarylacetoacetate (FAA) hydrolase family protein; 5-carboxymethyl-2-hydroxymuconate Delta-isomerase complement(431325..432188) Variovorax paradoxus S110 7975770 YP_002947573.1 CDS Vapar_5718 NC_012792.1 432225 432776 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swi:Swit_3019 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase complement(432225..432776) Variovorax paradoxus S110 7975771 YP_002947574.1 CDS Vapar_5719 NC_012792.1 432810 433526 R PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: mes:Meso_2933 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(432810..433526) Variovorax paradoxus S110 7975772 YP_002947575.1 CDS Vapar_5720 NC_012792.1 433558 434151 D PFAM: NADPH-dependent FMN reductase; KEGG: acr:Acry_2828 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 433558..434151 Variovorax paradoxus S110 7975773 YP_002947576.1 CDS Vapar_5721 NC_012792.1 434168 435181 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4499 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter, DctP subunit complement(434168..435181) Variovorax paradoxus S110 7975774 YP_002947577.1 CDS Vapar_5722 NC_012792.1 435217 435666 R PFAM: dehydroquinase class II; KEGG: bja:blr1201 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase complement(435217..435666) Variovorax paradoxus S110 7975775 YP_002947578.1 CDS Vapar_5723 NC_012792.1 435682 436689 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pna:Pnap_0043 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter, DctP subunit complement(435682..436689) Variovorax paradoxus S110 7975776 YP_002947579.1 CDS Vapar_5724 NC_012792.1 436811 437593 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: bpy:Bphyt_4108 transcriptional regulator, IclR family; transcriptional regulator, IclR family 436811..437593 Variovorax paradoxus S110 7975777 YP_002947580.1 CDS Vapar_5725 NC_012792.1 437621 438325 R PFAM: B3/4 domain protein; KEGG: ara:Arad_3110 hypothetical protein; B3/4 domain protein complement(437621..438325) Variovorax paradoxus S110 7975778 YP_002947581.1 CDS Vapar_5726 NC_012792.1 438365 439225 R PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bpl:BURPS1106A_2007 AraC family transcriptional regulator; AraC family transcriptional regulator complement(438365..439225) Variovorax paradoxus S110 7975779 YP_002947582.1 CDS Vapar_5727 NC_012792.1 439247 439363 D hypothetical protein 439247..439363 Variovorax paradoxus S110 7975780 YP_002947583.1 CDS Vapar_5728 NC_012792.1 439462 439911 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pol:Bpro_4801 hypothetical protein; Activator of Hsp90 ATPase 1 family protein 439462..439911 Variovorax paradoxus S110 7975781 YP_002947584.1 CDS Vapar_5729 NC_012792.1 439925 440674 R PFAM: Integral membrane protein TerC; KEGG: pol:Bpro_3668 integral membrane protein TerC; Integral membrane protein TerC complement(439925..440674) Variovorax paradoxus S110 7975782 YP_002947585.1 CDS Vapar_5730 NC_012792.1 440864 441232 D KEGG: rme:Rmet_5324 putative signal peptide protein; putative signal peptide protein 440864..441232 Variovorax paradoxus S110 7975783 YP_002947586.1 CDS Vapar_5731 NC_012792.1 441293 441706 D PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_5013 acetyltransferase; GCN5-related N-acetyltransferase 441293..441706 Variovorax paradoxus S110 7975784 YP_002947587.1 CDS Vapar_5732 NC_012792.1 441736 442248 D KEGG: pfl:PFL_2517 hypothetical protein; hypothetical protein 441736..442248 Variovorax paradoxus S110 7975785 YP_002947588.1 CDS Vapar_5733 NC_012792.1 442331 443197 D PFAM: alpha/beta hydrolase fold; KEGG: mlo:mlr2710 hydrolase; alpha/beta hydrolase fold protein 442331..443197 Variovorax paradoxus S110 7975786 YP_002947589.1 CDS Vapar_5734 NC_012792.1 443227 443658 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bbr:BB2463 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 443227..443658 Variovorax paradoxus S110 7975787 YP_002947590.1 CDS Vapar_5735 NC_012792.1 443682 444359 R PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_3767 glutathione S-transferase domain-containing protein; Glutathione S-transferase domain protein complement(443682..444359) Variovorax paradoxus S110 7975788 YP_002947591.1 CDS Vapar_5736 NC_012792.1 444400 444879 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: nmu:Nmul_A2171 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase complement(444400..444879) Variovorax paradoxus S110 7975102 YP_002947592.1 CDS Vapar_5737 NC_012792.1 444977 445471 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rpi:Rpic_0074 transcriptional regulator, AraC family; AraC family transcriptional regulator 444977..445471 Variovorax paradoxus S110 7974858 YP_002947593.1 CDS Vapar_5738 NC_012792.1 445468 445875 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_A1507 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 445468..445875 Variovorax paradoxus S110 7974859 YP_002947594.1 CDS Vapar_5739 NC_012792.1 445894 446586 R KEGG: rfr:Rfer_0340 putative ABC transporter, periplasmic molybdate binding protein; putative ABC transporter, periplasmic molybdate binding protein complement(445894..446586) Variovorax paradoxus S110 7974860 YP_002947595.1 CDS Vapar_5740 NC_012792.1 446583 447488 R PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative-like; KEGG: pna:Pnap_2165 6-phosphogluconate dehydrogenase, NAD-binding; Phosphogluconate dehydrogenase, NAD-binding, putative-like protein complement(446583..447488) Variovorax paradoxus S110 7974861 YP_002947596.1 CDS Vapar_5741 NC_012792.1 447506 448525 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_4323 uncharacterized protein UPF0065; hypothetical protein complement(447506..448525) Variovorax paradoxus S110 7974862 YP_002947597.1 CDS Vapar_5742 NC_012792.1 448541 449248 R TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: pna:Pnap_2031 hypothetical protein; 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase complement(448541..449248) Variovorax paradoxus S110 7974863 YP_002947598.1 CDS Vapar_5743 NC_012792.1 449253 450281 R PFAM: amidohydrolase 2; KEGG: azo:azo2542 4-oxalomesaconate hydratase; amidohydrolase 2 complement(449253..450281) Variovorax paradoxus S110 7974864 YP_002947599.1 CDS Vapar_5744 NC_012792.1 450445 451749 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_6554 LysR family transcriptional regulator; LysR family transcriptional regulator 450445..451749 Variovorax paradoxus S110 7974865 YP_002947600.1 CDS Vapar_5745 NC_012792.1 451771 452643 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; KEGG: pol:Bpro_5116 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding complement(451771..452643) Variovorax paradoxus S110 7974866 YP_002947601.1 CDS Vapar_5746 NC_012792.1 453014 454000 D PFAM: beta-lactamase; KEGG: dac:Daci_3665 beta-lactamase; beta-lactamase 453014..454000 Variovorax paradoxus S110 7974867 YP_002947602.1 CDS Vapar_5747 NC_012792.1 454028 454942 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xfa:XF1768 LysR family transcriptional regulator; LysR family transcriptional regulator complement(454028..454942) Variovorax paradoxus S110 7974868 YP_002947603.1 CDS Vapar_5748 NC_012792.1 455078 455569 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_3259 cupin 2 domain-containing protein; Cupin 2 conserved barrel domain protein 455078..455569 Variovorax paradoxus S110 7974869 YP_002947604.1 CDS Vapar_5749 NC_012792.1 455659 456324 D PFAM: Carboxymuconolactone decarboxylase; KEGG: xfa:XF1766 hypothetical protein; Carboxymuconolactone decarboxylase 455659..456324 Variovorax paradoxus S110 7974870 YP_002947605.1 CDS Vapar_5750 NC_012792.1 456451 457428 R PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0840 hypothetical protein; hypothetical protein complement(456451..457428) Variovorax paradoxus S110 7974871 YP_002947606.1 CDS Vapar_5751 NC_012792.1 457491 458474 R PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0843 hypothetical protein; hypothetical protein complement(457491..458474) Variovorax paradoxus S110 7974872 YP_002947607.1 CDS Vapar_5752 NC_012792.1 458522 459475 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: pna:Pnap_0844 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding complement(458522..459475) Variovorax paradoxus S110 7974873 YP_002947608.1 CDS Vapar_5753 NC_012792.1 459588 460742 D PFAM: Citrate synthase; regulatory protein MerR; KEGG: pna:Pnap_0845 citrate synthase; Citrate synthase 459588..460742 Variovorax paradoxus S110 7974874 YP_002947609.1 CDS Vapar_5754 NC_012792.1 460706 461518 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pna:Pnap_4816 methionine aminopeptidase, type I; methionine aminopeptidase, type I complement(460706..461518) Variovorax paradoxus S110 7974875 YP_002947610.1 CDS Vapar_5755 NC_012792.1 461518 461772 R KEGG: pna:Pnap_4817 hypothetical protein; hypothetical protein complement(461518..461772) Variovorax paradoxus S110 7974876 YP_002947611.1 CDS Vapar_5756 NC_012792.1 461964 462608 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: rfr:Rfer_2843 bifunctional deaminase-reductase-like; bifunctional deaminase-reductase domain protein 461964..462608 Variovorax paradoxus S110 7974877 YP_002947612.1 CDS Vapar_5757 NC_012792.1 462605 463660 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: lch:Lcho_0451 hypothetical protein; hypothetical protein 462605..463660 Variovorax paradoxus S110 7974878 YP_002947613.1 CDS Vapar_5758 NC_012792.1 463697 464623 R PFAM: manganese and iron superoxide dismutase; SMART: Rhodanese domain protein; KEGG: pol:Bpro_2502 manganese and iron superoxide dismutase; manganese and iron superoxide dismutase complement(463697..464623) Variovorax paradoxus S110 7974879 YP_002947614.1 CDS Vapar_5759 NC_012792.1 464635 466008 R TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: lch:Lcho_0450 chromate transporter; chromate transporter, chromate ion transporter (CHR) family complement(464635..466008) Variovorax paradoxus S110 7974880 YP_002947615.1 CDS Vapar_5760 NC_012792.1 466148 466567 R KEGG: bbt:BBta_6787 hypothetical protein; hypothetical protein complement(466148..466567) Variovorax paradoxus S110 7974881 YP_002947616.1 CDS Vapar_5761 NC_012792.1 466700 467881 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: azo:azo3440 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 466700..467881 Variovorax paradoxus S110 7974882 YP_002947617.1 CDS Vapar_5762 NC_012792.1 467946 468959 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dac:Daci_5444 AraC family transcriptional regulator; AraC family transcriptional regulator 467946..468959 Variovorax paradoxus S110 7974883 YP_002947618.1 CDS Vapar_5763 NC_012792.1 469058 470560 D PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_B4758 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 469058..470560 Variovorax paradoxus S110 7974884 YP_002947619.1 CDS Vapar_5764 NC_012792.1 470560 470979 D PFAM: thioesterase superfamily protein; KEGG: reu:Reut_A1410 phenylacetic acid degradation-related protein; thioesterase superfamily protein 470560..470979 Variovorax paradoxus S110 7974885 YP_002947620.1 CDS Vapar_5765 NC_012792.1 471026 472006 D PFAM: conserved hypothetical protein; KEGG: reh:H16_A3193 probable extra-cytoplasmic solute receptor; hypothetical protein 471026..472006 Variovorax paradoxus S110 7974886 YP_002947621.1 CDS Vapar_5766 NC_012792.1 472015 472842 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dia:Dtpsy_0126 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 472015..472842 Variovorax paradoxus S110 7974887 YP_002947622.1 CDS Vapar_5767 NC_012792.1 472839 473273 D PFAM: thioesterase superfamily protein; KEGG: pnu:Pnuc_0837 thioesterase superfamily protein; thioesterase superfamily protein 472839..473273 Variovorax paradoxus S110 7974888 YP_002947623.1 CDS Vapar_5768 NC_012792.1 473373 474566 D PFAM: Thiolase; KEGG: reu:Reut_B4757 lipid-transfer protein; lipid-transfer protein 473373..474566 Variovorax paradoxus S110 7974889 YP_002947624.1 CDS Vapar_5769 NC_012792.1 474563 475006 D KEGG: bxe:Bxe_B2726 hypothetical protein; hypothetical protein 474563..475006 Variovorax paradoxus S110 7974890 YP_002947625.1 CDS Vapar_5770 NC_012792.1 475003 475452 D PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_5027 MaoC-like dehydratase; MaoC domain protein dehydratase 475003..475452 Variovorax paradoxus S110 7974891 YP_002947626.1 CDS Vapar_5771 NC_012792.1 475474 476313 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reu:Reut_B4754 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 475474..476313 Variovorax paradoxus S110 7974892 YP_002947627.1 CDS Vapar_5772 NC_012792.1 476310 477476 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: cti:RALTA_B0547 putative acyl-CoA dehydrogenase oxidoreductase protein; acyl-CoA dehydrogenase domain protein 476310..477476 Variovorax paradoxus S110 7974893 YP_002947628.1 CDS Vapar_5773 NC_012792.1 477473 479164 D PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_4502 acyl-CoA synthetase; AMP-dependent synthetase and ligase 477473..479164 Variovorax paradoxus S110 7974894 YP_002947629.1 CDS Vapar_5774 NC_012792.1 479161 479964 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0110 enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase 479161..479964 Variovorax paradoxus S110 7974895 YP_002947630.1 CDS Vapar_5775 NC_012792.1 479961 480350 D PFAM: protein of unknown function DUF35; KEGG: dia:Dtpsy_0146 protein of unknown function DUF35; hypothetical protein 479961..480350 Variovorax paradoxus S110 7974896 YP_002947631.1 CDS Vapar_5776 NC_012792.1 480347 481528 D KEGG: dac:Daci_0177 thiolase; thiolase 480347..481528 Variovorax paradoxus S110 7974897 YP_002947632.1 CDS Vapar_5777 NC_012792.1 481575 482579 D PFAM: conserved hypothetical protein; KEGG: dac:Daci_5443 hypothetical protein; hypothetical protein 481575..482579 Variovorax paradoxus S110 7974898 YP_002947633.1 CDS Vapar_5778 NC_012792.1 482744 483574 D PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: hch:HCH_03658 SAM-dependent methyltransferase; Methyltransferase type 11 482744..483574 Variovorax paradoxus S110 7974899 YP_002947634.1 CDS Vapar_5779 NC_012792.1 483608 484420 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rle:RL2939 putative methyltransferase; Methyltransferase type 11 complement(483608..484420) Variovorax paradoxus S110 7974900 YP_002947635.1 CDS Vapar_5780 NC_012792.1 484522 485607 R PFAM: alpha/beta hydrolase fold; KEGG: bja:blr6677 hypothetical protein; hypothetical protein complement(484522..485607) Variovorax paradoxus S110 7974901 YP_002947636.1 CDS Vapar_5781 NC_012792.1 485734 486387 D PFAM: Glutathione S-transferase domain; KEGG: mlo:mlr2031 hypothetical protein; Glutathione S-transferase domain protein 485734..486387 Variovorax paradoxus S110 7974902 YP_002947637.1 CDS Vapar_5782 NC_012792.1 486737 486865 D hypothetical protein 486737..486865 Variovorax paradoxus S110 7974903 YP_002947638.1 CDS Vapar_5783 NC_012792.1 486963 487565 D hypothetical protein 486963..487565 Variovorax paradoxus S110 7974904 YP_002947639.1 CDS Vapar_5784 NC_012792.1 487677 488204 D PFAM: GCN5-related N-acetyltransferase; KEGG: bch:Bcen2424_3481 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 487677..488204 Variovorax paradoxus S110 7974905 YP_002947640.1 CDS Vapar_5785 NC_012792.1 488311 488442 R hypothetical protein complement(488311..488442) Variovorax paradoxus S110 7974906 YP_002947641.1 CDS Vapar_5786 NC_012792.1 488582 489190 D KEGG: azo:azo1536 hypothetical protein; hypothetical protein 488582..489190 Variovorax paradoxus S110 7974907 YP_002947642.1 CDS Vapar_5787 NC_012792.1 489212 490138 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_4204 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(489212..490138) Variovorax paradoxus S110 7974908 YP_002947643.1 CDS Vapar_5788 NC_012792.1 490258 491223 D PFAM: alpha/beta hydrolase fold; KEGG: rpe:RPE_4492 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 490258..491223 Variovorax paradoxus S110 7974909 YP_002947644.1 CDS Vapar_5789 NC_012792.1 491254 492045 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A2852 putative oxidoreductase protein; short-chain dehydrogenase/reductase SDR 491254..492045 Variovorax paradoxus S110 7974910 YP_002947645.1 CDS Vapar_5790 NC_012792.1 492103 492633 R KEGG: bcj:BCAM1693 hypothetical protein; hypothetical protein complement(492103..492633) Variovorax paradoxus S110 7974911 YP_002947646.1 CDS Vapar_5791 NC_012792.1 493021 493416 D KEGG: mrd:Mrad2831_4717 hypothetical protein; hypothetical protein 493021..493416 Variovorax paradoxus S110 7974912 YP_002947647.1 CDS Vapar_5792 NC_012792.1 493524 494504 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_2295 hypothetical protein; hypothetical protein complement(493524..494504) Variovorax paradoxus S110 7974913 YP_002947648.1 CDS Vapar_5793 NC_012792.1 494692 495252 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bbr:BB1786 putative transcriptional regulator; transcriptional regulator, MarR family 494692..495252 Variovorax paradoxus S110 7974914 YP_002947649.1 CDS Vapar_5794 NC_012792.1 495362 497524 D TIGRFAM: integral membrane protein, YccS/YhfK family; hypothetical protein; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: pmy:Pmen_0470 YccS/YhfK family integral membrane protein; integral membrane protein, YccS/YhfK family 495362..497524 Variovorax paradoxus S110 7974915 YP_002947650.1 CDS Vapar_5795 NC_012792.1 497538 498497 R PFAM: amidohydrolase 2; KEGG: pol:Bpro_0242 amidohydrolase 2; amidohydrolase 2 complement(497538..498497) Variovorax paradoxus S110 7974916 YP_002947651.1 CDS Vapar_5796 NC_012792.1 498497 499450 R PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mms:mma_2348 transcriptional regulator; AraC family transcriptional regulator complement(498497..499450) Variovorax paradoxus S110 7974917 YP_002947652.1 CDS Vapar_5797 NC_012792.1 499559 500557 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: reu:Reut_B4485 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 499559..500557 Variovorax paradoxus S110 7974918 YP_002947653.1 CDS Vapar_5798 NC_012792.1 500604 501530 R KEGG: swi:Swit_0196 helicase domain-containing protein; hypothetical protein complement(500604..501530) Variovorax paradoxus S110 7974919 YP_002947654.1 CDS Vapar_5799 NC_012792.1 501615 502613 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_2901 LysR family transcriptional regulator; LysR family transcriptional regulator complement(501615..502613) Variovorax paradoxus S110 7974920 YP_002947655.1 CDS Vapar_5800 NC_012792.1 502716 503924 D PFAM: aminotransferase class I and II; KEGG: vei:Veis_2902 aminotransferase, class I and II; aminotransferase class I and II 502716..503924 Variovorax paradoxus S110 7974921 YP_002947656.1 CDS Vapar_5801 NC_012792.1 503942 504934 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_2903 hypothetical protein; hypothetical protein 503942..504934 Variovorax paradoxus S110 7974922 YP_002947657.1 CDS Vapar_5802 NC_012792.1 504945 505634 D PFAM: Dimethylmenaquinone methyltransferase; KEGG: reh:H16_B0348 demethylmenaquinone methyltransferase; Dimethylmenaquinone methyltransferase 504945..505634 Variovorax paradoxus S110 7974923 YP_002947658.1 CDS Vapar_5803 NC_012792.1 505869 506192 D KEGG: eba:ebB61 hypothetical protein; hypothetical protein 505869..506192 Variovorax paradoxus S110 7974924 YP_002947659.1 CDS Vapar_5804 NC_012792.1 506353 509949 R catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; 2-oxoacid ferredoxin oxidoreductase complement(506353..509949) Variovorax paradoxus S110 7974925 YP_002947660.1 CDS Vapar_5805 NC_012792.1 510042 510560 D PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: bmu:Bmul_0192 AsnC family transcriptional regulator; transcriptional regulator, AsnC family 510042..510560 Variovorax paradoxus S110 7974926 YP_002947661.1 CDS Vapar_5806 NC_012792.1 510914 513112 D TIGRFAM: para-aminobenzoate synthase, subunit I; glutamine amidotransferase of anthranilate synthase; PFAM: Chorismate binding-like; glutamine amidotransferase class-I; Anthranilate synthase component I domain protein; KEGG: nha:Nham_1044 para-aminobenzoate synthase, component I; para-aminobenzoate synthase, subunit I 510914..513112 Variovorax paradoxus S110 7974927 YP_002947662.1 CDS Vapar_5807 NC_012792.1 513105 513968 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: mlo:mlr0545 hypothetical protein; hypothetical protein 513105..513968 Variovorax paradoxus S110 7974928 YP_002947663.1 CDS Vapar_5808 NC_012792.1 514156 514818 D KEGG: afr:AFE_1999 autoinducer synthesis protein; Acyl-homoserine-lactone synthase 514156..514818 Variovorax paradoxus S110 7974929 YP_002947664.1 CDS Vapar_5809 NC_012792.1 514795 515502 R PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: bmn:BMA10247_1686 ATP-dependent transcription regulator LuxR; transcriptional regulator, LuxR family complement(514795..515502) Variovorax paradoxus S110 7974930 YP_002947665.1 CDS Vapar_5810 NC_012792.1 515812 516795 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: reu:Reut_C5976 transcriptional regulator; AraC family transcriptional regulator 515812..516795 Variovorax paradoxus S110 7974931 YP_002947666.1 CDS Vapar_5811 NC_012792.1 516850 517749 R KEGG: bbt:BBta_p0015 putative ParB-like (KorB) partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KorB domain protein; SMART: ParB domain protein nuclease; parB-like partition protein complement(516850..517749) Variovorax paradoxus S110 7974932 YP_002947667.1 CDS Vapar_5812 NC_012792.1 517746 518534 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: abo:ABO_2074 ParA family protein; Cobyrinic acid ac-diamide synthase complement(517746..518534) Variovorax paradoxus S110 7974933 YP_002947668.1 CDS Vapar_5813 NC_012792.1 518846 519349 D KEGG: ade:Adeh_1703 hypothetical protein; hypothetical protein 518846..519349 Variovorax paradoxus S110 7974934 YP_002947669.1 CDS Vapar_5814 NC_012792.1 519346 519678 D PFAM: Conjugal transfer protein TrbC; KEGG: oca:OCAR_7693 conjugal transfer protein, TrbC; Conjugal transfer protein TrbC 519346..519678 Variovorax paradoxus S110 7974935 YP_002947670.1 CDS Vapar_5815 NC_012792.1 519691 520059 D PFAM: type IV secretory pathway VirB3 family protein; KEGG: ccs:CCNA_02500 type IV secretory pathway, VirB3 protein; type IV secretory pathway VirB3 family protein 519691..520059 Variovorax paradoxus S110 7974936 YP_002947671.1 CDS Vapar_5816 NC_012792.1 520074 522581 D TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: xfa:XFa0007 conjugal transfer protein; type IV secretion/conjugal transfer ATPase, VirB4 family 520074..522581 Variovorax paradoxus S110 7974937 YP_002947672.1 CDS Vapar_5817 NC_012792.1 522574 523308 D PFAM: type IV secretion system family protein; KEGG: mrd:Mrad2831_6326 P-type DNA transfer protein VirB5; type IV secretion system family protein 522574..523308 Variovorax paradoxus S110 7974938 YP_002947673.1 CDS Vapar_5818 NC_012792.1 523576 524628 D PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: xfa:XFa0011 conjugal transfer protein; TrbL/VirB6 plasmid conjugal transfer protein 523576..524628 Variovorax paradoxus S110 7975020 YP_002947674.1 CDS Vapar_5819 NC_012792.1 524786 525508 D PFAM: VirB8 family protein; KEGG: xau:Xaut_5081 VirB8 family protein; VirB8 family protein 524786..525508 Variovorax paradoxus S110 7975870 YP_002947675.1 CDS Vapar_5820 NC_012792.1 525505 526347 D PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: xfa:XFa0013 conjugal transfer protein; Conjugal transfer protein TrbG/VirB9/CagX 525505..526347 Variovorax paradoxus S110 7975871 YP_002947676.1 CDS Vapar_5821 NC_012792.1 526344 527681 D PFAM: conjugation TrbI family protein; KEGG: xfa:XFa0014 conjugal transfer protein; conjugation TrbI family protein 526344..527681 Variovorax paradoxus S110 7975872 YP_002947677.1 CDS Vapar_5822 NC_012792.1 527650 528798 D TIGRFAM: P-type DNA transfer ATPase VirB11; PFAM: type II secretion system protein E; KEGG: rsq:Rsph17025_4369 type II secretion system protein E; P-type DNA transfer ATPase VirB11 527650..528798 Variovorax paradoxus S110 7975873 YP_002947678.1 CDS Vapar_5823 NC_012792.1 528764 530719 D PFAM: TRAG family protein; KEGG: bbt:BBta_p0247 putative type IV secretory pathway protein VirD4; TRAG family protein 528764..530719 Variovorax paradoxus S110 7975874 YP_002947679.1 CDS Vapar_5824 NC_012792.1 530787 531995 D KEGG: mrd:Mrad2831_6336 hypothetical protein; hypothetical protein 530787..531995 Variovorax paradoxus S110 7975875 YP_002947680.1 CDS Vapar_5825 NC_012792.1 532406 533122 D PFAM: TraX family protein; KEGG: ajs:Ajs_4260 TraX family protein; conjugal transfer protein TrbP 532406..533122 Variovorax paradoxus S110 7975876 YP_002947681.1 CDS Vapar_5826 NC_012792.1 533196 534287 R KEGG: bbt:BBta_p0017 hypothetical protein; hypothetical protein complement(533196..534287) Variovorax paradoxus S110 7975877 YP_002947682.1 CDS Vapar_5827 NC_012792.1 534295 534591 R hypothetical protein complement(534295..534591) Variovorax paradoxus S110 7975878 YP_002947683.1 CDS Vapar_5828 NC_012792.1 535120 535212 R hypothetical protein complement(535120..535212) Variovorax paradoxus S110 7975879 YP_002947684.1 CDS Vapar_5829 NC_012792.1 535343 535630 R TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ajs:Ajs_2238 addiction module antitoxin; addiction module toxin, RelE/StbE family complement(535343..535630) Variovorax paradoxus S110 7975880 YP_002947685.1 CDS Vapar_5830 NC_012792.1 535617 535913 R TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: pde:Pden_3591 addiction module antitoxin, RelB/DinJ family; addiction module antitoxin, RelB/DinJ family complement(535617..535913) Variovorax paradoxus S110 7975881 YP_002947686.1 CDS Vapar_5833 NC_012792.1 537487 538008 R PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: azc:AZC_1503 transcriptional regulator; XRE family transcriptional regulator complement(537487..538008) Variovorax paradoxus S110 7975884 YP_002947687.1 CDS Vapar_5834 NC_012792.1 538797 539660 D KEGG: sde:Sde_1403 hypothetical protein; hypothetical protein 538797..539660 Variovorax paradoxus S110 7975885 YP_002947688.1 CDS Vapar_5835 NC_012792.1 539902 540747 R hypothetical protein complement(539902..540747) Variovorax paradoxus S110 7975886 YP_002947689.1 CDS Vapar_5836 NC_012792.1 540904 541893 D KEGG: ajs:Ajs_2804 hypothetical protein; hypothetical protein 540904..541893 Variovorax paradoxus S110 7975887 YP_002947690.1 CDS Vapar_5837 NC_012792.1 541963 542478 D hypothetical protein 541963..542478 Variovorax paradoxus S110 7975888 YP_002947691.1 CDS Vapar_5838 NC_012792.1 542986 546669 D TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: bur:Bcep18194_B0758 outer membrane autotransporter barrel; outer membrane autotransporter barrel domain protein 542986..546669 Variovorax paradoxus S110 7975889 YP_002947692.1 CDS Vapar_5839 NC_012792.1 546878 547006 D hypothetical protein 546878..547006 Variovorax paradoxus S110 7975890 YP_002947693.1 CDS Vapar_5840 NC_012792.1 547088 547888 D hypothetical protein 547088..547888 Variovorax paradoxus S110 7975891 YP_002947694.1 CDS Vapar_5841 NC_012792.1 547967 556159 D PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: pol:Bpro_3667 cyclic beta 1-2 glucan synthetase; putative carbohydrate binding 547967..556159 Variovorax paradoxus S110 7975892 YP_002947695.1 CDS Vapar_5842 NC_012792.1 556827 557612 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dat:HRM2_12250 ABC-type histidine transport system, periplasmic histidine-binding protein (HBP) precursor; extracellular solute-binding protein family 3 556827..557612 Variovorax paradoxus S110 7975893 YP_002947696.1 CDS Vapar_5843 NC_012792.1 557628 558299 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_1114 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter, inner membrane subunit 557628..558299 Variovorax paradoxus S110 7975894 YP_002947697.1 CDS Vapar_5844 NC_012792.1 558304 558984 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5210 amino acid ABC transporter, permease protein; polar amino acid ABC transporter, inner membrane subunit 558304..558984 Variovorax paradoxus S110 7975895 YP_002947698.1 CDS Vapar_5845 NC_012792.1 558999 559586 D hypothetical protein 558999..559586 Variovorax paradoxus S110 7975896 YP_002947699.1 CDS Vapar_5846 NC_012792.1 559589 560341 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2561 ABC transporter related; ABC transporter 559589..560341 Variovorax paradoxus S110 7975897 YP_002947700.1 CDS Vapar_5847 NC_012792.1 560693 561349 R PFAM: Domain of unknown function DUF1814; KEGG: sml:Smlt3853 hypothetical protein; hypothetical protein complement(560693..561349) Variovorax paradoxus S110 7975898 YP_002947701.1 CDS Vapar_5848 NC_012792.1 561346 561876 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sml:Smlt3852 putative helix-turn-helix DNA binding protein; XRE family transcriptional regulator complement(561346..561876) Variovorax paradoxus S110 7975899 YP_002947702.1 CDS Vapar_5849 NC_012792.1 562507 563256 R PFAM: IstB domain protein ATP-binding protein; IstB ATP binding domain protein; KEGG: bxe:Bxe_A1794 putative transposase-related ATP-binding subunit; IstB domain protein ATP-binding protein complement(562507..563256) Variovorax paradoxus S110 7975900 YP_002947703.1 CDS Vapar_5850 NC_012792.1 563253 564794 R PFAM: Integrase catalytic region; KEGG: psa:PST_3409 ISPsy14, transposase; Integrase catalytic region complement(563253..564794) Variovorax paradoxus S110 7975901 YP_002947704.1 CDS Vapar_5851 NC_012792.1 564989 565291 R KEGG: mms:mma_3032 hypothetical protein; hypothetical protein complement(564989..565291) Variovorax paradoxus S110 7975902 YP_002947705.1 CDS Vapar_5852 NC_012792.1 565388 566218 D KEGG: mms:mma_0809 hypothetical protein; hypothetical protein 565388..566218 Variovorax paradoxus S110 7975903 YP_002947706.1 CDS Vapar_5854 NC_012792.1 566881 569967 D KEGG: rfr:Rfer_3041 ABC transporter; ABC transporter 566881..569967 Variovorax paradoxus S110 7975905 YP_002947707.1 CDS Vapar_5856 NC_012792.1 570430 570834 R KEGG: bmb:BruAb1_0811 hypothetical protein; hypothetical protein complement(570430..570834) Variovorax paradoxus S110 7975907 YP_002947708.1 CDS Vapar_5857 NC_012792.1 570831 571349 R hypothetical protein complement(570831..571349) Variovorax paradoxus S110 7975908 YP_002947709.1 CDS Vapar_5858 NC_012792.1 571494 572096 D KEGG: dps:DPPB35 hypothetical protein; hypothetical protein 571494..572096 Variovorax paradoxus S110 7975909 YP_002947710.1 CDS Vapar_5859 NC_012792.1 572089 572793 D hypothetical protein 572089..572793 Variovorax paradoxus S110 7975910 YP_002947711.1 CDS Vapar_5860 NC_012792.1 573131 573571 R SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_5522 hypothetical protein; XRE family transcriptional regulator complement(573131..573571) Variovorax paradoxus S110 7975911 YP_002947712.1 CDS Vapar_5861 NC_012792.1 573593 573793 R KEGG: mpt:Mpe_A1935 hypothetical protein; hypothetical protein complement(573593..573793) Variovorax paradoxus S110 7975912 YP_002947713.1 CDS Vapar_5862 NC_012792.1 573834 574268 D hypothetical protein 573834..574268 Variovorax paradoxus S110 7975913 YP_002947714.1 CDS Vapar_5863 NC_012792.1 574300 574707 D KEGG: aav:Aave_3399 hypothetical protein; hypothetical protein 574300..574707 Variovorax paradoxus S110 7975914 YP_002947715.1 CDS Vapar_5864 NC_012792.1 574714 574941 R hypothetical protein complement(574714..574941) Variovorax paradoxus S110 7975915 YP_002947716.1 CDS Vapar_5865 NC_012792.1 575081 575431 D hypothetical protein 575081..575431 Variovorax paradoxus S110 7975916 YP_002947717.1 CDS Vapar_5866 NC_012792.1 575521 576438 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpy:Bphyt_5385 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(575521..576438) Variovorax paradoxus S110 7975917 YP_002947718.1 CDS Vapar_5867 NC_012792.1 576488 576667 R hypothetical protein complement(576488..576667) Variovorax paradoxus S110 7975918 YP_002947719.1 CDS Vapar_5868 NC_012792.1 576713 577027 D KEGG: abu:Abu_0949 hypothetical protein; hypothetical protein 576713..577027 Variovorax paradoxus S110 7975919 YP_002947720.1 CDS Vapar_5870 NC_012792.1 577652 578884 R PFAM: Extracellular ligand-binding receptor; KEGG: mpt:Mpe_A1770 putative Leu/Ile/Val-binding precursor signal peptide protein; Extracellular ligand-binding receptor complement(577652..578884) Variovorax paradoxus S110 7975921 YP_002947721.1 CDS Vapar_5871 NC_012792.1 578922 580559 R PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA0464 putative long-chain fatty-acid-CoA ligase; AMP-dependent synthetase and ligase complement(578922..580559) Variovorax paradoxus S110 7975922 YP_002947722.1 CDS Vapar_5872 NC_012792.1 581037 581966 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 581037..581966 Variovorax paradoxus S110 7975923 YP_002947723.1 CDS Vapar_5873 NC_012792.1 581984 583189 D KEGG: rfr:Rfer_2753 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 581984..583189 Variovorax paradoxus S110 7975924 YP_002947724.1 CDS Vapar_5874 NC_012792.1 583195 585279 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: rfr:Rfer_2754 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding 583195..585279 Variovorax paradoxus S110 7975925 YP_002947725.1 CDS Vapar_5875 NC_012792.1 585880 586536 D PFAM: regulatory protein TetR; KEGG: pap:PSPA7_4004 TetR family transcriptional regulator; TetR family transcriptional regulator 585880..586536 Variovorax paradoxus S110 7975926 YP_002947726.1 CDS Vapar_5876 NC_012792.1 586911 587717 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(586911..587717) Variovorax paradoxus S110 7975927 YP_002947727.1 CDS Vapar_5877 NC_012792.1 588032 589300 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet3895 acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F 588032..589300 Variovorax paradoxus S110 7975928 YP_002947728.1 CDS Vapar_5878 NC_012792.1 589331 590314 D PFAM: conserved hypothetical protein; KEGG: bpt:Bpet3906 putative secreted protein; hypothetical protein 589331..590314 Variovorax paradoxus S110 7975929 YP_002947729.1 CDS Vapar_5879 NC_012792.1 590363 590968 D PFAM: Glutathione S-transferase domain; KEGG: bpt:Bpet3903 hypothetical protein; Glutathione S-transferase domain protein 590363..590968 Variovorax paradoxus S110 7975930 YP_002947730.1 CDS Vapar_5880 NC_012792.1 591001 591858 R PFAM: amidohydrolase 2; KEGG: bbr:BB4878 putative hydrolase; amidohydrolase 2 complement(591001..591858) Variovorax paradoxus S110 7975931 YP_002947731.1 CDS Vapar_5881 NC_012792.1 591858 592430 R PFAM: Carboxymuconolactone decarboxylase; KEGG: bpt:Bpet3902 hypothetical protein; Carboxymuconolactone decarboxylase complement(591858..592430) Variovorax paradoxus S110 7975932 YP_002947732.1 CDS Vapar_5882 NC_012792.1 592661 593638 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpt:Bpet3900 LysR family transcriptional regulator; LysR family transcriptional regulator complement(592661..593638) Variovorax paradoxus S110 7975933 YP_002947733.1 CDS Vapar_5883 NC_012792.1 593738 594619 R PFAM: alpha/beta hydrolase fold; KEGG: plu:plu2160 hypothetical protein; alpha/beta hydrolase fold protein complement(593738..594619) Variovorax paradoxus S110 7975934 YP_002947734.1 CDS Vapar_5884 NC_012792.1 594620 595858 R PFAM: beta-lactamase; KEGG: nar:Saro_0215 6-aminohexanoate-dimer hydrolase; beta-lactamase complement(594620..595858) Variovorax paradoxus S110 7975935 YP_002947735.1 CDS Vapar_5885 NC_012792.1 596137 597486 R KEGG: tmz:Tmz1t_1306 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(596137..597486) Variovorax paradoxus S110 7975936 YP_002947736.1 CDS Vapar_5886 NC_012792.1 597531 598976 R PFAM: Aldehyde Dehydrogenase; acyl-CoA reductase; KEGG: swi:Swit_1605 aldehyde dehydrogenase; Aldehyde Dehydrogenase complement(597531..598976) Variovorax paradoxus S110 7975937 YP_002947737.1 CDS Vapar_5887 NC_012792.1 599026 599982 R PFAM: conserved hypothetical protein; KEGG: bpt:Bpet3899 putative secreted protein; hypothetical protein complement(599026..599982) Variovorax paradoxus S110 7975938 YP_002947738.1 CDS Vapar_5888 NC_012792.1 599995 600801 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: sme:SMc04145 hypothetical protein; NAD-dependent epimerase/dehydratase complement(599995..600801) Variovorax paradoxus S110 7975939 YP_002947739.1 CDS Vapar_5889 NC_012792.1 601152 602234 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bsu:BSU12980 hypothetical protein; Mandelate racemase/muconate lactonizing protein 601152..602234 Variovorax paradoxus S110 7975940 YP_002947740.1 CDS Vapar_5890 NC_012792.1 602473 603549 D PFAM: porin Gram-negative type; KEGG: bch:Bcen2424_6141 porin; porin Gram-negative type 602473..603549 Variovorax paradoxus S110 7975941 YP_002947741.1 CDS Vapar_5891 NC_012792.1 603561 604544 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3546 hypothetical protein; hypothetical protein 603561..604544 Variovorax paradoxus S110 7975942 YP_002947742.1 CDS Vapar_5893 NC_012792.1 604898 605800 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: atc:AGR_L_895 hypothetical protein; LysR family transcriptional regulator complement(604898..605800) Variovorax paradoxus S110 7975944 YP_002947743.1 CDS Vapar_5894 NC_012792.1 605905 606285 D PFAM: Endoribonuclease L-PSP; KEGG: ara:Arad_1375 translation initiation inhibitor protein; Endoribonuclease L-PSP 605905..606285 Variovorax paradoxus S110 7975945 YP_002947744.1 CDS Vapar_5895 NC_012792.1 606287 606751 D PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: har:HEAR1179 isoquinoline 1-oxidoreductase alpha subunit; (2Fe-2S)-binding domain protein 606287..606751 Variovorax paradoxus S110 7975946 YP_002947745.1 CDS Vapar_5896 NC_012792.1 606748 608910 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bmj:BMULJ_04289 isoquinoline 1-oxidoreductase, beta subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding 606748..608910 Variovorax paradoxus S110 7975947 YP_002947746.1 CDS Vapar_5897 NC_012792.1 609014 609295 D PFAM: cytochrome c class I; KEGG: dia:Dtpsy_0985 cytochrome c class I; cytochrome c class I 609014..609295 Variovorax paradoxus S110 7975948 YP_002947747.1 CDS Vapar_5899 NC_012792.1 610250 611134 D PFAM: alpha/beta hydrolase fold; KEGG: plu:plu2160 hypothetical protein; alpha/beta hydrolase fold protein 610250..611134 Variovorax paradoxus S110 7975950 YP_002947748.1 CDS Vapar_5901 NC_012792.1 611572 611892 R hypothetical protein complement(611572..611892) Variovorax paradoxus S110 7974940 YP_002947749.1 CDS Vapar_5902 NC_012792.1 611889 612179 R hypothetical protein complement(611889..612179) Variovorax paradoxus S110 7974941 YP_002947750.1 CDS Vapar_5903 NC_012792.1 612362 613192 R PFAM: metallophosphoesterase; KEGG: bur:Bcep18194_A4597 metallophosphoesterase; metallophosphoesterase complement(612362..613192) Variovorax paradoxus S110 7974942 YP_002947751.1 CDS Vapar_5904 NC_012792.1 613189 614037 R PFAM: metallophosphoesterase; KEGG: pnu:Pnuc_0863 metallophosphoesterase; metallophosphoesterase complement(613189..614037) Variovorax paradoxus S110 7974943 YP_002947752.1 CDS Vapar_5905 NC_012792.1 614034 614660 R KEGG: reh:PHG181 hypothetical protein; hypothetical protein complement(614034..614660) Variovorax paradoxus S110 7974944 YP_002947753.1 CDS Vapar_5906 NC_012792.1 614713 615078 R KEGG: pol:Bpro_5527 hypothetical protein; hypothetical protein complement(614713..615078) Variovorax paradoxus S110 7974945 YP_002947754.1 CDS Vapar_5907 NC_012792.1 615138 616175 R KEGG: pna:Pnap_4692 ParB-like partition proteins; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein complement(615138..616175) Variovorax paradoxus S110 7974946 YP_002947755.1 CDS Vapar_5908 NC_012792.1 616449 616715 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: psa:PST_0708 putative regulatory protein; helix-turn-helix domain protein 616449..616715 Variovorax paradoxus S110 7974947 YP_002947756.1 CDS Vapar_5910 NC_012792.1 617234 617830 R TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: bph:Bphy_7813 chorismate mutase; chorismate mutase complement(617234..617830) Variovorax paradoxus S110 7974949 YP_002947757.1 CDS Vapar_5912 NC_012792.1 619109 620341 R PFAM: HipA domain protein; KEGG: vei:Veis_0672 HipA domain-containing protein; HipA domain protein complement(619109..620341) Variovorax paradoxus S110 7974951 YP_002947758.1 CDS Vapar_5916 NC_012792.1 621569 621832 D KEGG: bxe:Bxe_B1505 XRE family transcriptional regulator; XRE family transcriptional regulator 621569..621832 Variovorax paradoxus S110 7974955 YP_002947759.1 CDS Vapar_5917 NC_012792.1 621834 623171 D TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bpe:BP2622 HipA-like protein; HipA N-terminal domain protein 621834..623171 Variovorax paradoxus S110 7974956 YP_002947760.1 CDS Vapar_5918 NC_012792.1 623562 623939 D PFAM: protein of unknown function DUF433; KEGG: pna:Pnap_4858 hypothetical protein; hypothetical protein 623562..623939 Variovorax paradoxus S110 7974957 YP_002947761.1 CDS Vapar_5920 NC_012792.1 624438 625373 R PFAM: domain of unknown function DUF1738; KEGG: ecq:ECED1_3533 hypothetical protein; hypothetical protein complement(624438..625373) Variovorax paradoxus S110 7974959 YP_002947762.1 CDS Vapar_5921 NC_012792.1 625607 626509 D KEGG: afw:Anae109_1386 LigA; hypothetical protein 625607..626509 Variovorax paradoxus S110 7974960 YP_002947763.1 CDS Vapar_5922 NC_012792.1 626811 627122 R PFAM: plasmid stabilization system; KEGG: bvi:Bcep1808_2431 plasmid stabilization system protein; plasmid stabilization system complement(626811..627122) Variovorax paradoxus S110 7974961 YP_002947764.1 CDS Vapar_5923 NC_012792.1 627119 627421 R KEGG: xcv:XCV1188 hypothetical protein; hypothetical protein complement(627119..627421) Variovorax paradoxus S110 7974962 YP_002947765.1 CDS Vapar_5924 NC_012792.1 627993 629378 D Enables the enzymatic reduction of mercuric ions to elemental mercury; mercuric reductase 627993..629378 Variovorax paradoxus S110 7974963 YP_002947766.1 CDS Vapar_5927 NC_012792.1 630334 631629 R KEGG: dac:Daci_2014 porin; porin complement(630334..631629) Variovorax paradoxus S110 7974966 YP_002947767.1 CDS Vapar_5928 NC_012792.1 631815 632462 D PFAM: regulatory protein TetR; KEGG: vei:Veis_0622 TetR family transcriptional regulator; TetR family transcriptional regulator 631815..632462 Variovorax paradoxus S110 7974967 YP_002947768.1 CDS Vapar_5929 NC_012792.1 632629 633645 D PFAM: amidohydrolase 2; KEGG: hypothetical protein ; K03392 aminocarboxymuconate-semialdehyde decarboxylase; amidohydrolase 2 632629..633645 Variovorax paradoxus S110 7974968 YP_002947769.1 CDS Vapar_5930 NC_012792.1 633691 634662 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B1445 probable extra-cytoplasmic solute receptor; hypothetical protein 633691..634662 Variovorax paradoxus S110 7974969 YP_002947770.1 CDS Vapar_5931 NC_012792.1 634865 635437 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: azc:AZC_1503 transcriptional regulator; XRE family transcriptional regulator complement(634865..635437) Variovorax paradoxus S110 7974970 YP_002947771.1 CDS Vapar_5932 NC_012792.1 635668 635955 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bph:Bphy_6926 XRE family transcriptional regulator; XRE family transcriptional regulator 635668..635955 Variovorax paradoxus S110 7974971 YP_002947772.1 CDS Vapar_5933 NC_012792.1 636822 637028 R KEGG: ara:Arad_1020 hypothetical protein; hypothetical protein complement(636822..637028) Variovorax paradoxus S110 7974972 YP_002947773.1 CDS Vapar_5935 NC_012792.1 637235 637438 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ajs:Ajs_1547 helix-turn-helix domain-containing protein; XRE family transcriptional regulator 637235..637438 Variovorax paradoxus S110 7974974 YP_002947774.1 CDS Vapar_5936 NC_012792.1 637656 639026 R TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: dac:Daci_0282 HipA domain-containing protein; HipA N-terminal domain protein complement(637656..639026) Variovorax paradoxus S110 7974975 YP_002947775.1 CDS Vapar_5937 NC_012792.1 639013 639339 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dac:Daci_0283 XRE family transcriptional regulator; XRE family transcriptional regulator complement(639013..639339) Variovorax paradoxus S110 7974976 YP_002947776.1 CDS Vapar_5938 NC_012792.1 639757 640446 D KEGG: ajs:Ajs_2561 translation initiation factor 2; hypothetical protein 639757..640446 Variovorax paradoxus S110 7974977 YP_002947777.1 CDS Vapar_5939 NC_012792.1 640452 641171 D KEGG: pol:Bpro_5519 hypothetical protein; hypothetical protein 640452..641171 Variovorax paradoxus S110 7974978 YP_002947778.1 CDS Vapar_5940 NC_012792.1 641168 641806 D PFAM: RES domain protein; KEGG: pol:Bpro_5520 hypothetical protein; RES domain protein 641168..641806 Variovorax paradoxus S110 7974979 YP_002947779.1 CDS Vapar_5941 NC_012792.1 642265 642918 R PFAM: transcriptional regulator domain protein; KEGG: dac:Daci_5416 two component transcriptional regulator; putative two component transcriptional regulator, winged helix family complement(642265..642918) Variovorax paradoxus S110 7974980 YP_002947780.1 CDS Vapar_5942 NC_012792.1 643158 650396 R TIGRFAM: conserved repeat domain protein; KEGG: pna:Pnap_0407 hypothetical protein; conserved repeat domain protein complement(643158..650396) Variovorax paradoxus S110 7974981 YP_002947781.1 CDS Vapar_5943 NC_012792.1 650399 657703 R TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: pna:Pnap_0406 hypothetical protein; conserved repeat domain protein complement(650399..657703) Variovorax paradoxus S110 7974982 YP_002947782.1 CDS Vapar_5944 NC_012792.1 657918 660827 R TIGRFAM: conserved repeat domain protein; KEGG: pna:Pnap_0405 hypothetical protein; conserved repeat domain protein complement(657918..660827) Variovorax paradoxus S110 7974983 YP_002947783.1 CDS Vapar_5945 NC_012792.1 660970 661611 R KEGG: pna:Pnap_0404 hypothetical protein; hypothetical protein complement(660970..661611) Variovorax paradoxus S110 7974984 YP_002947784.1 CDS Vapar_5946 NC_012792.1 661977 662855 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bvi:Bcep1808_6598 LysR family transcriptional regulator; LysR family transcriptional regulator complement(661977..662855) Variovorax paradoxus S110 7974985 YP_002947785.1 CDS Vapar_5947 NC_012792.1 663947 665512 R PFAM: extracellular solute-binding protein family 5; KEGG: pol:Bpro_1443 extracellular solute-binding protein, family 5; extracellular solute-binding protein family 5 complement(663947..665512) Variovorax paradoxus S110 7974986 YP_002947786.1 CDS Vapar_5948 NC_012792.1 665551 667242 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1444 ABC transporter related; ABC transporter complement(665551..667242) Variovorax paradoxus S110 7974987 YP_002947787.1 CDS Vapar_5949 NC_012792.1 667239 668066 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV2613 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component complement(667239..668066) Variovorax paradoxus S110 7974988 YP_002947788.1 CDS Vapar_5950 NC_012792.1 668063 669007 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV2614 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component complement(668063..669007) Variovorax paradoxus S110 7974989 YP_002947789.1 CDS Vapar_5951 NC_012792.1 669038 669916 R KEGG: bav:BAV2615 poly(aspartic acid) hydrolase; poly(aspartic acid) hydrolase complement(669038..669916) Variovorax paradoxus S110 7974990 YP_002947790.1 CDS Vapar_5952 NC_012792.1 669964 671097 R PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: bra:BRADO2616 hypothetical protein; peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase complement(669964..671097) Variovorax paradoxus S110 7974991 YP_002947791.1 CDS Vapar_5953 NC_012792.1 671233 672126 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_4722 LysR family transcriptional regulator; LysR family transcriptional regulator 671233..672126 Variovorax paradoxus S110 7974992 YP_002947792.1 CDS Vapar_5954 NC_012792.1 672283 672846 R PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rpb:RPB_1139 transcriptional regulator; XRE family transcriptional regulator complement(672283..672846) Variovorax paradoxus S110 7974993 YP_002947793.1 CDS Vapar_5955 NC_012792.1 673079 673324 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ajs:Ajs_1547 helix-turn-helix domain-containing protein; XRE family transcriptional regulator 673079..673324 Variovorax paradoxus S110 7974994 YP_002947794.1 CDS Vapar_5956 NC_012792.1 674145 674669 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pap:PSPA7_2236 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 674145..674669 Variovorax paradoxus S110 7974995 YP_002947795.1 CDS Vapar_5957 NC_012792.1 674632 675969 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: lch:Lcho_1760 HlyD family type I secretion membrane fusion protein; type I secretion membrane fusion protein, HlyD family complement(674632..675969) Variovorax paradoxus S110 7974996 YP_002947796.1 CDS Vapar_5958 NC_012792.1 675966 677675 R KEGG: lch:Lcho_1761 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase complement(675966..677675) Variovorax paradoxus S110 7974997 YP_002947797.1 CDS Vapar_5959 NC_012792.1 677728 685431 R TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; KEGG: dar:Daro_3199 VCBS; outer membrane adhesin-like protein complement(677728..685431) Variovorax paradoxus S110 7974998 YP_002947798.1 CDS Vapar_5961 NC_012792.1 686550 687830 R PFAM: porin Gram-negative type; KEGG: dac:Daci_2014 porin; porin Gram-negative type complement(686550..687830) Variovorax paradoxus S110 7975000 YP_002947799.1 CDS Vapar_5962 NC_012792.1 687872 688840 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_5628 hypothetical protein; hypothetical protein complement(687872..688840) Variovorax paradoxus S110 7975001 YP_002947800.1 CDS Vapar_5963 NC_012792.1 688837 689955 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: dac:Daci_5629 cobalamin synthesis protein P47K; cobalamin synthesis protein P47K complement(688837..689955) Variovorax paradoxus S110 7975002 YP_002947801.1 CDS Vapar_5964 NC_012792.1 689952 690326 R KEGG: dac:Daci_5630 hypothetical protein; hypothetical protein complement(689952..690326) Variovorax paradoxus S110 7975003 YP_002947802.1 CDS Vapar_5965 NC_012792.1 690335 692128 R PFAM: Hydantoinase B/oxoprolinase; KEGG: dac:Daci_5631 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase (ATP-hydrolyzing) complement(690335..692128) Variovorax paradoxus S110 7975004 YP_002947803.1 CDS Vapar_5966 NC_012792.1 692125 694209 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dac:Daci_5632 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase (ATP-hydrolyzing) complement(692125..694209) Variovorax paradoxus S110 7975005 YP_002947804.1 CDS Vapar_5967 NC_012792.1 694226 695077 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dac:Daci_5633 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; 5-carboxymethyl-2-hydroxymuconate Delta-isomerase complement(694226..695077) Variovorax paradoxus S110 7975006 YP_002947805.1 CDS Vapar_5968 NC_012792.1 695232 696182 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_5634 LysR family transcriptional regulator; LysR family transcriptional regulator 695232..696182 Variovorax paradoxus S110 7975007 YP_002947806.1 CDS Vapar_5969 NC_012792.1 696378 696866 D KEGG: pol:Bpro_2479 transcriptional regulator, LysR family; hypothetical protein 696378..696866 Variovorax paradoxus S110 7975008 YP_002947807.1 CDS Vapar_5970 NC_012792.1 697058 698662 R PFAM: FAD dependent oxidoreductase; KEGG: aca:ACP_0974 amine oxidase, flavin-containing; FAD dependent oxidoreductase complement(697058..698662) Variovorax paradoxus S110 7975009 YP_002947808.1 CDS Vapar_5971 NC_012792.1 698682 699848 R PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0264 extracellular ligand-binding receptor; Extracellular ligand-binding receptor complement(698682..699848) Variovorax paradoxus S110 7975010 YP_002947809.1 CDS Vapar_5972 NC_012792.1 699903 700607 R PFAM: ABC transporter related; KEGG: reh:H16_B2040 ABC-type transporter, ATPase component: HAAT family; ABC transporter complement(699903..700607) Variovorax paradoxus S110 7975011 YP_002947810.1 CDS Vapar_5973 NC_012792.1 700594 701358 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_0262 ABC transporter related; ABC transporter complement(700594..701358) Variovorax paradoxus S110 7975012 YP_002947811.1 CDS Vapar_5974 NC_012792.1 701351 702376 R PFAM: inner-membrane translocator; KEGG: dac:Daci_0261 inner-membrane translocator; inner-membrane translocator complement(701351..702376) Variovorax paradoxus S110 7975013 YP_002947812.1 CDS Vapar_5975 NC_012792.1 702378 703235 R PFAM: inner-membrane translocator; KEGG: dac:Daci_0260 inner-membrane translocator; inner-membrane translocator complement(702378..703235) Variovorax paradoxus S110 7975014 YP_002947813.1 CDS Vapar_5976 NC_012792.1 703245 704900 R PFAM: AMP-dependent synthetase and ligase; KEGG: cti:RALTA_A1460 medium-chain-fatty-acid-CoA ligase (medium-chain acyl-CoA synthetase); AMP-dependent synthetase and ligase complement(703245..704900) Variovorax paradoxus S110 7975015 YP_002947814.1 CDS Vapar_5977 NC_012792.1 705018 706445 R PFAM: Aldehyde Dehydrogenase; KEGG: reu:Reut_A1842 betaine-aldehyde dehydrogenase; Aldehyde Dehydrogenase complement(705018..706445) Variovorax paradoxus S110 7975016 YP_002947815.1 CDS Vapar_5978 NC_012792.1 706473 706787 R PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: xca:xccb100_2089 hypothetical protein; Ethyl tert-butyl ether degradation EthD complement(706473..706787) Variovorax paradoxus S110 7975017 YP_002947816.1 CDS Vapar_5979 NC_012792.1 706812 707684 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pla:Plav_0829 taurine dioxygenase; Taurine dioxygenase complement(706812..707684) Variovorax paradoxus S110 7975018 YP_002947817.1 CDS Vapar_5980 NC_012792.1 707864 708937 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bcj:BCAM0161 AraC family regulatory protein; AraC family transcriptional regulator 707864..708937 Variovorax paradoxus S110 7975019 YP_002947818.1 CDS Vapar_5981 NC_012792.1 708969 709091 R hypothetical protein complement(708969..709091) Variovorax paradoxus S110 7974856 YP_002947819.1 CDS Vapar_5982 NC_012792.1 709272 710843 R PFAM: transposase IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66 complement(709272..710843) Variovorax paradoxus S110 7975267 YP_002947820.1 CDS Vapar_5983 NC_012792.1 710901 711233 R PFAM: IS66 Orf2 family protein; KEGG: aav:Aave_0711 IS66 Orf2 family protein; IS66 Orf2 family protein complement(710901..711233) Variovorax paradoxus S110 7975268 YP_002947821.1 CDS Vapar_5984 NC_012792.1 711230 711577 R PFAM: transposase IS3/IS911 family protein; KEGG: dia:Dtpsy_2521 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(711230..711577) Variovorax paradoxus S110 7975269 YP_002947822.1 CDS Vapar_5985 NC_012792.1 712589 712864 D hypothetical protein 712589..712864 Variovorax paradoxus S110 7975270 YP_002947823.1 CDS Vapar_5986 NC_012792.1 712887 713042 R hypothetical protein complement(712887..713042) Variovorax paradoxus S110 7975271 YP_002947824.1 CDS Vapar_5988 NC_012792.1 713554 713883 D PFAM: Collagen triple helix repeat; KEGG: dar:Daro_2077 triple helix repeat-containing collagen; Collagen triple helix repeat protein 713554..713883 Variovorax paradoxus S110 7975273 YP_002947825.1 CDS Vapar_5989 NC_012792.1 713995 714246 R KEGG: pna:Pnap_0923 response regulator receiver protein; response regulator receiver protein complement(713995..714246) Variovorax paradoxus S110 7975274 YP_002947826.1 CDS Vapar_5990 NC_012792.1 714754 714912 R KEGG: mes:Meso_3331 hypothetical protein; hypothetical protein complement(714754..714912) Variovorax paradoxus S110 7975275 YP_002947827.1 CDS Vapar_5991 NC_012792.1 715056 715307 R hypothetical protein complement(715056..715307) Variovorax paradoxus S110 7975276 YP_002947828.1 CDS Vapar_5992 NC_012792.1 715347 716471 R PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bxe:Bxe_B1521 putative histidine kinase; histidine kinase complement(715347..716471) Variovorax paradoxus S110 7975277 YP_002947829.1 CDS Vapar_5993 NC_012792.1 716714 717454 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: pna:Pnap_1315 CRP/FNR family transcriptional regulator; transcriptional regulator, Crp/Fnr family 716714..717454 Variovorax paradoxus S110 7975278 YP_002947830.1 CDS Vapar_5994 NC_012792.1 717576 718283 D KEGG: pol:Bpro_0178 cyclic nucleotide-binding domain (cNMP-BD) protein; putative transcriptional regulator, Crp/Fnr family 717576..718283 Variovorax paradoxus S110 7975279 YP_002947831.1 CDS Vapar_5995 NC_012792.1 718487 718927 D KEGG: bvi:Bcep1808_2629 transposase IS3/IS911 family protein; hypothetical protein 718487..718927 Variovorax paradoxus S110 7975280 YP_002947832.1 CDS Vapar_5996 NC_012792.1 720251 720472 D hypothetical protein 720251..720472 Variovorax paradoxus S110 7975281 YP_002947833.1 CDS Vapar_5997 NC_012792.1 720852 721163 D KEGG: pna:Pnap_0923 response regulator receiver protein; response regulator receiver protein 720852..721163 Variovorax paradoxus S110 7975282 YP_002947834.1 CDS Vapar_5998 NC_012792.1 721748 722674 D hypothetical protein 721748..722674 Variovorax paradoxus S110 7975283 YP_002947835.1 CDS Vapar_5999 NC_012792.1 722883 723434 D KEGG: mpt:Mpe_A1028 hypothetical protein; hypothetical protein 722883..723434 Variovorax paradoxus S110 7975284 YP_002947836.1 CDS Vapar_6000 NC_012792.1 723642 724427 R PFAM: Domain of unknown function DUF1814; KEGG: plu:plu1042 hypothetical protein; hypothetical protein complement(723642..724427) Variovorax paradoxus S110 7975285 YP_002947837.1 CDS Vapar_6001 NC_012792.1 724424 725353 R KEGG: noc:Noc_A0025 hypothetical protein; hypothetical protein complement(724424..725353) Variovorax paradoxus S110 7975286 YP_002947838.1 CDS Vapar_6002 NC_012792.1 725726 726127 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 725726..726127 Variovorax paradoxus S110 7975287 YP_002947839.1 CDS Vapar_6004 NC_012792.1 727191 728687 R PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; KEGG: bbr:BB0863 hypothetical protein; Microcystin LR degradation protein MlrC-like protein complement(727191..728687) Variovorax paradoxus S110 7975289 YP_002947840.1 CDS Vapar_6005 NC_012792.1 728726 729718 R KEGG: sfu:Sfum_3246 peptidase S58, DmpA; peptidase S58, DmpA complement(728726..729718) Variovorax paradoxus S110 7975290 YP_002947841.1 CDS Vapar_6006 NC_012792.1 729737 730510 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL90229 putative ATP-binding component of ABC transporter; ABC transporter complement(729737..730510) Variovorax paradoxus S110 7975291 YP_002947842.1 CDS Vapar_6007 NC_012792.1 730507 731484 R KEGG: xau:Xaut_2764 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; peptide ABC transporter ATPase complement(730507..731484) Variovorax paradoxus S110 7975292 YP_002947843.1 CDS Vapar_6008 NC_012792.1 731484 732329 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO2552 peptide/opine/nickel ABC transporter, permease/ATP-binding protein; binding-protein-dependent transport systems inner membrane component complement(731484..732329) Variovorax paradoxus S110 7975293 YP_002947844.1 CDS Vapar_6009 NC_012792.1 732341 733297 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_3805 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(732341..733297) Variovorax paradoxus S110 7975294 YP_002947845.1 CDS Vapar_6010 NC_012792.1 733314 734897 R PFAM: extracellular solute-binding protein family 5; KEGG: mes:Meso_0074 twin-arginine translocation pathway signal; extracellular solute-binding protein family 5 complement(733314..734897) Variovorax paradoxus S110 7975295 YP_002947846.1 CDS Vapar_6011 NC_012792.1 734997 736118 D PFAM: peptidase S58 DmpA; KEGG: csa:Csal_1047 Aminopeptidase DmpA. Serine peptidase. MEROPS family S58; peptidase S58 DmpA 734997..736118 Variovorax paradoxus S110 7975296 YP_002947847.1 CDS Vapar_6012 NC_012792.1 736115 736981 D PFAM: sugar isomerase (SIS); KEGG: swi:Swit_1822 RpiR family transcriptional regulator; transcriptional regulator, RpiR family 736115..736981 Variovorax paradoxus S110 7975297 YP_002947848.1 CDS Vapar_6013 NC_012792.1 737310 737711 D PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: aav:Aave_4026 GreA/GreB family elongation factor; GreA/GreB family elongation factor 737310..737711 Variovorax paradoxus S110 7975298 YP_002947849.1 CDS Vapar_6014 NC_012792.1 737717 738367 R KEGG: bcm:Bcenmc03_0814 DNA polymerase beta subunit; hypothetical protein complement(737717..738367) Variovorax paradoxus S110 7975299 YP_002947850.1 CDS Vapar_6015 NC_012792.1 738429 740816 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(738429..740816) Variovorax paradoxus S110 7975300 YP_002947851.1 CDS Vapar_6016 NC_012792.1 740950 741291 D KEGG: mch:Mchl_1033 protein of unknown function DUF305; hypothetical protein 740950..741291 Variovorax paradoxus S110 7975301 YP_002947852.1 CDS Vapar_6017 NC_012792.1 741353 742816 D KEGG: dac:Daci_5335 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 741353..742816 Variovorax paradoxus S110 7975302 YP_002947853.1 CDS Vapar_6018 NC_012792.1 742842 744104 R PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_B0899 transporter of the major facilitator superfamily(MFS); major facilitator superfamily MFS_1 complement(742842..744104) Variovorax paradoxus S110 7975303 YP_002947854.1 CDS Vapar_6019 NC_012792.1 744447 744833 D KEGG: aav:Aave_3273 hypothetical protein; hypothetical protein 744447..744833 Variovorax paradoxus S110 7975304 YP_002947855.1 CDS Vapar_6020 NC_012792.1 744844 746364 D PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_3272 hypothetical protein; hypothetical protein 744844..746364 Variovorax paradoxus S110 7975305 YP_002947856.1 CDS Vapar_6021 NC_012792.1 746692 747750 D PFAM: UspA domain protein; KEGG: ajs:Ajs_3554 UspA domain-containing protein; UspA domain protein 746692..747750 Variovorax paradoxus S110 7975306 YP_002947857.1 CDS Vapar_6022 NC_012792.1 747862 747978 D hypothetical protein 747862..747978 Variovorax paradoxus S110 7975307 YP_002947858.1 CDS Vapar_6024 NC_012792.1 748546 749601 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 748546..749601 Variovorax paradoxus S110 7975309 YP_002947859.1 CDS Vapar_6025 NC_012792.1 749568 750320 R KEGG: tgr:Tgr7_3014 putative pimeloyl-BioC--CoA transferase BioH; hypothetical protein complement(749568..750320) Variovorax paradoxus S110 7975310 YP_002947860.1 CDS Vapar_6026 NC_012792.1 750402 750791 R hypothetical protein complement(750402..750791) Variovorax paradoxus S110 7975311 YP_002947861.1 CDS Vapar_6027 NC_012792.1 751032 751598 D PFAM: transcriptional regulator domain protein; KEGG: nha:Nham_3088 transcriptional regulator, CadC; transcriptional regulator, CadC 751032..751598 Variovorax paradoxus S110 7975312 YP_002947862.1 CDS Vapar_6028 NC_012792.1 751615 753255 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: smd:Smed_3586 SMP-30/gluconolaconase/LRE domain protein; transcriptional regulator, IclR family complement(751615..753255) Variovorax paradoxus S110 7975313 YP_002947863.1 CDS Vapar_6029 NC_012792.1 753471 754421 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B5146 hypothetical protein; hypothetical protein complement(753471..754421) Variovorax paradoxus S110 7975314 YP_002947864.1 CDS Vapar_6030 NC_012792.1 754487 755542 R PFAM: conserved hypothetical protein; KEGG: bja:blr3889 hypothetical protein; hypothetical protein complement(754487..755542) Variovorax paradoxus S110 7975315 YP_002947865.1 CDS Vapar_6031 NC_012792.1 755539 756450 R PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: bvi:Bcep1808_0593 2-keto-3-deoxygalactonate kinase; 2-dehydro-3-deoxygalactonokinase complement(755539..756450) Variovorax paradoxus S110 7975316 YP_002947866.1 CDS Vapar_6032 NC_012792.1 756447 757634 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: smd:Smed_3592 mandelate racemase/muconate lactonizing protein; Mandelate racemase/muconate lactonizing protein complement(756447..757634) Variovorax paradoxus S110 7975317 YP_002947867.1 CDS Vapar_6033 NC_012792.1 757631 758551 R PFAM: dihydrodipicolinate synthetase; KEGG: atc:AGR_pAT_671 probable dihydrodipicolinate synthetase PA0223; dihydrodipicolinate synthetase complement(757631..758551) Variovorax paradoxus S110 7975318 YP_002947868.1 CDS Vapar_6034 NC_012792.1 758743 760722 D PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: pna:Pnap_4085 integral membrane sensor signal transduction histidine kinase; histidine kinase 758743..760722 Variovorax paradoxus S110 7975319 YP_002947869.1 CDS Vapar_6035 NC_012792.1 760748 761239 D PFAM: GCN5-related N-acetyltransferase; KEGG: tgr:Tgr7_1824 gentamicin 3'-N-acetyltransferase; Gentamicin 3'-N-acetyltransferase 760748..761239 Variovorax paradoxus S110 7975320 YP_002947870.1 CDS Vapar_6036 NC_012792.1 761246 762013 D hypothetical protein 761246..762013 Variovorax paradoxus S110 7975321 YP_002947871.1 CDS Vapar_6037 NC_012792.1 762065 762946 R PFAM: aldo/keto reductase; KEGG: bch:Bcen2424_3561 putative oxidoreductase; aldo/keto reductase complement(762065..762946) Variovorax paradoxus S110 7975322 YP_002947872.1 CDS Vapar_6038 NC_012792.1 763063 763962 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpi:Rpic_4851 transcriptional regulator, LysR family; LysR family transcriptional regulator 763063..763962 Variovorax paradoxus S110 7975323 YP_002947873.1 CDS Vapar_6039 NC_012792.1 763991 764128 R hypothetical protein complement(763991..764128) Variovorax paradoxus S110 7975324 YP_002947874.1 CDS Vapar_6041 NC_012792.1 764725 764985 R PFAM: heat shock protein DnaJ domain protein; KEGG: similar to testis spermatogenesis apoptosis-related protein 1; heat shock protein DnaJ domain protein complement(764725..764985) Variovorax paradoxus S110 7975326 YP_002947875.1 CDS Vapar_6042 NC_012792.1 765019 766446 R PFAM: NAD(P) transhydrogenase beta subunit; KEGG: lch:Lcho_0425 NAD(P)(+) transhydrogenase (AB-specific); NAD(P)(+) transhydrogenase (AB-specific) complement(765019..766446) Variovorax paradoxus S110 7975327 YP_002947876.1 CDS Vapar_6043 NC_012792.1 766443 766772 R KEGG: pna:Pnap_3799 NAD(P) transhydrogenase, subunit alpha part 2; NAD(P) transhydrogenase, subunit alpha part 2 complement(766443..766772) Variovorax paradoxus S110 7975328 YP_002947877.1 CDS Vapar_6044 NC_012792.1 766807 767937 R PFAM: alanine dehydrogenase/PNT domain protein; KEGG: vei:Veis_4748 NAD(P)(+) transhydrogenase (AB-specific); NAD(P)(+) transhydrogenase (AB-specific) complement(766807..767937) Variovorax paradoxus S110 7975329 YP_002947878.1 CDS Vapar_6045 NC_012792.1 768040 769029 R PFAM: isochorismatase hydrolase; Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hypothetical protein; isochorismatase hydrolase complement(768040..769029) Variovorax paradoxus S110 7975330 YP_002947879.1 CDS Vapar_6046 NC_012792.1 769029 769223 R TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: ajs:Ajs_0227 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase family enzyme complement(769029..769223) Variovorax paradoxus S110 7975331 YP_002947880.1 CDS Vapar_6047 NC_012792.1 769225 769899 R KEGG: pol:Bpro_2862 phytanoyl-CoA dioxygenase; hypothetical protein complement(769225..769899) Variovorax paradoxus S110 7975332 YP_002947881.1 CDS Vapar_6048 NC_012792.1 769902 771248 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bav:BAV0626 hydantoinase; amidohydrolase complement(769902..771248) Variovorax paradoxus S110 7975333 YP_002947882.1 CDS Vapar_6049 NC_012792.1 771245 772135 R PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: bha:BH2403 dipicolinate synthase subunit A; Shikimate/quinate 5-dehydrogenase complement(771245..772135) Variovorax paradoxus S110 7975334 YP_002947883.1 CDS Vapar_6050 NC_012792.1 772132 773220 R PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: mes:Meso_2393 NAD/NADP octopine/nopaline dehydrogenase; NAD/NADP octopine/nopaline dehydrogenase complement(772132..773220) Variovorax paradoxus S110 7975335 YP_002947884.1 CDS Vapar_6051 NC_012792.1 773237 774025 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3092 ABC transporter related; ABC transporter complement(773237..774025) Variovorax paradoxus S110 7975336 YP_002947885.1 CDS Vapar_6052 NC_012792.1 774060 774884 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0620 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(774060..774884) Variovorax paradoxus S110 7975337 YP_002947886.1 CDS Vapar_6053 NC_012792.1 774896 775867 R PFAM: NMT1/THI5 like domain protein; KEGG: atc:AGR_L_129GM putative sulfonate/nitrate transport system substrate-binding protein; NMT1/THI5 like domain protein complement(774896..775867) Variovorax paradoxus S110 7975338 YP_002947887.1 CDS Vapar_6054 NC_012792.1 776084 776830 D PFAM: GntR domain protein; regulatory protein GntR HTH; KEGG: mes:Meso_2357 transcriptional regulator, GntR family; GntR family transcriptional regulator 776084..776830 Variovorax paradoxus S110 7975339 YP_002947888.1 CDS Vapar_6055 NC_012792.1 776844 777332 D PFAM: Endoribonuclease L-PSP; KEGG: rec:RHECIAT_PC0000813 hypothetical protein; Endoribonuclease L-PSP 776844..777332 Variovorax paradoxus S110 7975340 YP_002947889.1 CDS Vapar_6056 NC_012792.1 777334 778371 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mag:amb2306 putative GTPase; cobalamin synthesis protein P47K 777334..778371 Variovorax paradoxus S110 7975341 YP_002947890.1 CDS Vapar_6058 NC_012792.1 778820 780259 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: atrazine chlorohydrolase/guanine deaminase; amidohydrolase complement(778820..780259) Variovorax paradoxus S110 7975343 YP_002947891.1 CDS Vapar_6059 NC_012792.1 780298 781437 R PFAM: peptidase M24; creatinase; KEGG: mes:Meso_2395 peptidase M24; peptidase M24 complement(780298..781437) Variovorax paradoxus S110 7975344 YP_002947892.1 CDS Vapar_6060 NC_012792.1 781482 782642 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mes:Meso_2396 mandelate racemase/muconate lactonizing enzyme-like; Mandelate racemase/muconate lactonizing protein complement(781482..782642) Variovorax paradoxus S110 7975345 YP_002947893.1 CDS Vapar_6061 NC_012792.1 782807 783139 D hypothetical protein 782807..783139 Variovorax paradoxus S110 7975346 YP_002947894.1 CDS Vapar_6063 NC_012792.1 783739 785079 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rme:Rmet_5997 amidohydrolase; amidohydrolase complement(783739..785079) Variovorax paradoxus S110 7975698 YP_002947895.1 CDS Vapar_6064 NC_012792.1 785141 785929 R PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_5996 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(785141..785929) Variovorax paradoxus S110 7975510 YP_002947896.1 CDS Vapar_6065 NC_012792.1 785941 786810 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_1710 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; 5-carboxymethyl-2-hydroxymuconate Delta-isomerase complement(785941..786810) Variovorax paradoxus S110 7975511 YP_002947897.1 CDS Vapar_6066 NC_012792.1 786996 787865 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dsh:Dshi_3708 AraC family transcriptional regulator; AraC family transcriptional regulator 786996..787865 Variovorax paradoxus S110 7975512 YP_002947898.1 CDS Vapar_6067 NC_012792.1 787989 788657 R KEGG: rpa:RPA3633 hypothetical protein; hypothetical protein complement(787989..788657) Variovorax paradoxus S110 7975513 YP_002947899.1 CDS Vapar_6068 NC_012792.1 788699 789673 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_0843 uncharacterized protein UPF0065; hypothetical protein complement(788699..789673) Variovorax paradoxus S110 7975514 YP_002947900.1 CDS Vapar_6069 NC_012792.1 789728 790684 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_0191 hypothetical protein; hypothetical protein complement(789728..790684) Variovorax paradoxus S110 7975515 YP_002947901.1 CDS Vapar_6070 NC_012792.1 790677 792053 R PFAM: Amidase; KEGG: mno:Mnod_4802 amidase; Amidase complement(790677..792053) Variovorax paradoxus S110 7975516 YP_002947902.1 CDS Vapar_6071 NC_012792.1 792050 792679 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: gdj:Gdia_2262 dimethylmenaquinone methyltransferase; Dimethylmenaquinone methyltransferase complement(792050..792679) Variovorax paradoxus S110 7975517 YP_002947903.1 CDS Vapar_6072 NC_012792.1 792793 793728 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sme:SMa0498 transcriptional regulator, LysR family; LysR family transcriptional regulator 792793..793728 Variovorax paradoxus S110 7975518 YP_002947904.1 CDS Vapar_6074 NC_012792.1 794802 796436 D PFAM: filamentation induced by cAMP protein Fic; KEGG: cti:pRALTA_0620 hypothetical protein; filamentation induced by cAMP protein Fic 794802..796436 Variovorax paradoxus S110 7975520 YP_002947905.1 CDS Vapar_6075 NC_012792.1 796448 796780 D PFAM: GCN5-related N-acetyltransferase; KEGG: ara:Arad_3849 hypothetical protein; GCN5-related N-acetyltransferase 796448..796780 Variovorax paradoxus S110 7975521 YP_002947906.1 CDS Vapar_6076 NC_012792.1 796808 797452 D PFAM: Negative transcriptional regulator; KEGG: lch:Lcho_4337 FMN-binding negative transcriptional regulator; FMN-binding negative transcriptional regulator 796808..797452 Variovorax paradoxus S110 7975522 YP_002947907.1 CDS Vapar_6077 NC_012792.1 797463 798071 D PFAM: protein of unknown function UPF0126; KEGG: lch:Lcho_1847 hypothetical protein; hypothetical protein 797463..798071 Variovorax paradoxus S110 7975523 YP_002947908.1 CDS Vapar_6078 NC_012792.1 798108 798905 R PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: bph:Bphy_7225 protein of unknown function DUF899 thioredoxin family protein; hypothetical protein complement(798108..798905) Variovorax paradoxus S110 7975524 YP_002947909.1 CDS Vapar_6079 NC_012792.1 799057 800040 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_0157 twin-arginine translocation pathway signal; hypothetical protein 799057..800040 Variovorax paradoxus S110 7975525 YP_002947910.1 CDS Vapar_6080 NC_012792.1 800125 800724 D PFAM: regulatory protein TetR; KEGG: pna:Pnap_1293 TetR family transcriptional regulator; TetR family transcriptional regulator 800125..800724 Variovorax paradoxus S110 7975526 YP_002947911.1 CDS Vapar_6081 NC_012792.1 800765 801271 D KEGG: pol:Bpro_0103 hypothetical protein; hypothetical protein 800765..801271 Variovorax paradoxus S110 7975527 YP_002947912.1 CDS Vapar_6082 NC_012792.1 801283 802284 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_1291 alcohol dehydrogenase; Alcohol dehydrogenase zinc-binding domain protein 801283..802284 Variovorax paradoxus S110 7975528 YP_002947913.1 CDS Vapar_6083 NC_012792.1 802328 803032 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; KEGG: dac:Daci_4383 short chain dehydrogenase; short chain dehydrogenase 802328..803032 Variovorax paradoxus S110 7975529 YP_002947914.1 CDS Vapar_6084 NC_012792.1 803033 803869 D PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0307 alpha/beta hydrolase; alpha/beta hydrolase fold protein 803033..803869 Variovorax paradoxus S110 7975530 YP_002947915.1 CDS Vapar_6085 NC_012792.1 804001 804258 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: reu:Reut_B3946 helix-hairpin-helix DNA-binding motif-containing protein; XRE family transcriptional regulator 804001..804258 Variovorax paradoxus S110 7975531 YP_002947916.1 CDS Vapar_6086 NC_012792.1 804261 805601 D TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bpy:Bphyt_4901 HipA N-terminal domain protein; HipA N-terminal domain protein 804261..805601 Variovorax paradoxus S110 7975532 YP_002947917.1 CDS Vapar_6087 NC_012792.1 805733 806017 D KEGG: har:HEAR2717 putative signal peptide protein; putative signal peptide protein 805733..806017 Variovorax paradoxus S110 7975533 YP_002947918.1 CDS Vapar_6088 NC_012792.1 806099 806749 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_0107 ABC transporter related; ABC transporter complement(806099..806749) Variovorax paradoxus S110 7975534 YP_002947919.1 CDS Vapar_6089 NC_012792.1 806816 807628 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2966 phosphonate ABC transporter, inner membrane subunit; phosphonate ABC transporter permease complement(806816..807628) Variovorax paradoxus S110 7975535 YP_002947920.1 CDS Vapar_6090 NC_012792.1 807671 808618 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate binding protein; phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dia:Dtpsy_2915 phosphonate ABC transporter, periplasmic phosphonate binding protein; phosphonate ABC transporter substrate-binding protein complement(807671..808618) Variovorax paradoxus S110 7975536 YP_002947921.1 CDS Vapar_6091 NC_012792.1 808668 809534 R KEGG: vei:Veis_2964 phosphonate ABC transporter, ATPase subunit; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATPase complement(808668..809534) Variovorax paradoxus S110 7975537 YP_002947922.1 CDS Vapar_6092 NC_012792.1 809648 810805 R TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; KEGG: vei:Veis_2963 phosphonate metabolism protein PhnM; phosphonate metabolism protein PhnM complement(809648..810805) Variovorax paradoxus S110 7975538 YP_002947923.1 CDS Vapar_6093 NC_012792.1 810802 811518 R KEGG: vei:Veis_2962 phosphonate C-P lyase system protein PhnL; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnL complement(810802..811518) Variovorax paradoxus S110 7975539 YP_002947924.1 CDS phnK NC_012792.1 811515 812306 R KEGG: dia:Dtpsy_2919 phosphonate C-P lyase system protein PhnK; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnK complement(811515..812306) Variovorax paradoxus S110 7975540 YP_002947925.1 CDS Vapar_6095 NC_012792.1 812303 813202 R PFAM: phosphonate metabolism PhnJ; KEGG: dia:Dtpsy_2921 phosphonate metabolism PhnJ; phosphonate metabolism PhnJ complement(812303..813202) Variovorax paradoxus S110 7975541 YP_002947926.1 CDS Vapar_6096 NC_012792.1 813199 814293 R PFAM: phosphonate metabolism; KEGG: vei:Veis_2959 phosphonate metabolism; phosphonate metabolism complement(813199..814293) Variovorax paradoxus S110 7975542 YP_002947927.1 CDS Vapar_6097 NC_012792.1 814295 814927 R TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: dia:Dtpsy_2923 phosphonate C-P lyase system protein PhnH; phosphonate C-P lyase system protein PhnH complement(814295..814927) Variovorax paradoxus S110 7975543 YP_002947928.1 CDS Vapar_6098 NC_012792.1 814924 815442 R TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: dia:Dtpsy_2924 phosphonate C-P lyase system protein PhnG; phosphonate C-P lyase system protein PhnG complement(814924..815442) Variovorax paradoxus S110 7975544 YP_002947929.1 CDS Vapar_6099 NC_012792.1 815518 816300 D KEGG: dia:Dtpsy_2925 phophonate C-P lyase system transcriptional regulator PhnF, GntR family; TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 815518..816300 Variovorax paradoxus S110 7975545 YP_002947930.1 CDS Vapar_6100 NC_012792.1 816293 817018 D PFAM: protein of unknown function DUF1045; KEGG: dia:Dtpsy_2926 protein of unknown function DUF1045; hypothetical protein 816293..817018 Variovorax paradoxus S110 7975546 YP_002947931.1 CDS Vapar_6101 NC_012792.1 817015 817611 D TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; KEGG: vei:Veis_2955 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 817015..817611 Variovorax paradoxus S110 7975547 YP_002947932.1 CDS Vapar_6102 NC_012792.1 817813 818973 D PFAM: domain of unknown function DUF1745; KEGG: bpl:BURPS1106A_A2230 hypothetical protein; hypothetical protein 817813..818973 Variovorax paradoxus S110 7975548 YP_002947933.1 CDS Vapar_6103 NC_012792.1 818966 820063 D PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: pna:Pnap_4054 ATPase domain-containing protein; histidine kinase 818966..820063 Variovorax paradoxus S110 7975549 YP_002947934.1 CDS Vapar_6104 NC_012792.1 820060 822327 D KEGG: pfo:Pfl01_4551 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 820060..822327 Variovorax paradoxus S110 7975550 YP_002947935.1 CDS Vapar_6105 NC_012792.1 822324 823316 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pna:Pnap_4043 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter, DctP subunit 822324..823316 Variovorax paradoxus S110 7975551 YP_002947936.1 CDS Vapar_6106 NC_012792.1 823393 825564 D KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; diguanylate cyclase/phosphodiesterase with extracellular sensor 823393..825564 Variovorax paradoxus S110 7975552 YP_002947937.1 CDS Vapar_6107 NC_012792.1 825630 827003 R KEGG: bmn:BMA10247_A2412 putative replication protein; putative replication protein complement(825630..827003) Variovorax paradoxus S110 7975553 YP_002947938.1 CDS Vapar_6108 NC_012792.1 827532 828767 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bph:Bphy_7204 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase 827532..828767 Variovorax paradoxus S110 7975554 YP_002947939.1 CDS Vapar_6109 NC_012792.1 829011 830090 D KEGG: bph:Bphy_7203 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein 829011..830090 Variovorax paradoxus S110 7975555 YP_002947940.1 CDS Vapar_6110 NC_012792.1 830287 830619 R KEGG: reh:H16_A0908 membrane protein; membrane protein complement(830287..830619) Variovorax paradoxus S110 7975556 YP_002947941.1 CDS Vapar_6111 NC_012792.1 831010 831291 D KEGG: dac:Daci_2735 hypothetical protein; hypothetical protein 831010..831291 Variovorax paradoxus S110 7975557 YP_002947942.1 CDS Vapar_6112 NC_012792.1 831288 833180 D PFAM: integrase family protein; KEGG: rme:Rmet_6086 phage integrase; integrase family protein 831288..833180 Variovorax paradoxus S110 7975558 YP_002947943.1 CDS Vapar_6113 NC_012792.1 833288 834175 D PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2; amidohydrolase 2 833288..834175 Variovorax paradoxus S110 7975559 YP_002947944.1 CDS Vapar_6114 NC_012792.1 834225 835160 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pna:Pnap_2034 LysR family transcriptional regulator; LysR family transcriptional regulator 834225..835160 Variovorax paradoxus S110 7975560 YP_002947945.1 CDS Vapar_6115 NC_012792.1 835129 836115 R PFAM: conserved hypothetical protein; KEGG: dac:Daci_0590 hypothetical protein; hypothetical protein complement(835129..836115) Variovorax paradoxus S110 7975561 YP_002947946.1 CDS Vapar_6116 NC_012792.1 836318 837397 D hypothetical protein 836318..837397 Variovorax paradoxus S110 7975562 YP_002947947.1 CDS Vapar_6117 NC_012792.1 837415 838350 R KEGG: dia:Dtpsy_0052 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain 1 protein complement(837415..838350) Variovorax paradoxus S110 7975563 YP_002947948.1 CDS Vapar_6118 NC_012792.1 838490 839671 R KEGG: aav:Aave_3129 hypothetical protein; hypothetical protein complement(838490..839671) Variovorax paradoxus S110 7975564 YP_002947949.1 CDS Vapar_6119 NC_012792.1 839819 840991 R KEGG: aav:Aave_3129 hypothetical protein; hypothetical protein complement(839819..840991) Variovorax paradoxus S110 7975565 YP_002947950.1 CDS Vapar_6120 NC_012792.1 841081 842901 R PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: xau:Xaut_0992 integral membrane sensor hybrid histidine kinase; histidine kinase complement(841081..842901) Variovorax paradoxus S110 7975566 YP_002947951.1 CDS Vapar_6121 NC_012792.1 842973 843611 R PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: lch:Lcho_4097 two component LuxR family transcriptional regulator; two component transcriptional regulator, LuxR family complement(842973..843611) Variovorax paradoxus S110 7975567 YP_002947952.1 CDS Vapar_6122 NC_012792.1 843926 844798 D PFAM: fatty acid hydroxylase; KEGG: ccs:CCNA_01511 sterol desaturase family protein; fatty acid hydroxylase 843926..844798 Variovorax paradoxus S110 7975568 YP_002947953.1 CDS Vapar_6123 NC_012792.1 844845 846455 D PFAM: beta-lactamase; KEGG: nwi:Nwi_0653 beta-lactamase; beta-lactamase 844845..846455 Variovorax paradoxus S110 7975569 YP_002947954.1 CDS Vapar_6124 NC_012792.1 846507 846923 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: afe:Lferr_1429 glutathione-dependent formaldehyde-activating GFA; glutathione-dependent formaldehyde-activating GFA complement(846507..846923) Variovorax paradoxus S110 7975570 YP_002947955.1 CDS Vapar_6125 NC_012792.1 846934 847260 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pfo:Pfl01_0667 antibiotic biosynthesis monooxygenase; Antibiotic biosynthesis monooxygenase complement(846934..847260) Variovorax paradoxus S110 7975571 YP_002947956.1 CDS Vapar_6126 NC_012792.1 847364 848263 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mlo:mlr1973 glycine cleavage system transcription activator; LysR family transcriptional regulator 847364..848263 Variovorax paradoxus S110 7975572 YP_002947957.1 CDS Vapar_6127 NC_012792.1 848328 849278 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_5619 LysR family transcriptional regulator; LysR family transcriptional regulator 848328..849278 Variovorax paradoxus S110 7975573 YP_002947958.1 CDS Vapar_6128 NC_012792.1 849436 849945 D KEGG: bur:Bcep18194_B2740 hypothetical protein; hypothetical protein 849436..849945 Variovorax paradoxus S110 7975574 YP_002947959.1 CDS Vapar_6129 NC_012792.1 849965 850972 D KEGG: bph:Bphy_5621 hypothetical protein; hypothetical protein 849965..850972 Variovorax paradoxus S110 7975575 YP_002947960.1 CDS Vapar_6130 NC_012792.1 851093 852571 D PFAM: Aldehyde Dehydrogenase; KEGG: bur:Bcep18194_B2738 aldehyde dehydrogenase (acceptor); Betaine-aldehyde dehydrogenase 851093..852571 Variovorax paradoxus S110 7975576 YP_002947961.1 CDS Vapar_6131 NC_012792.1 852643 853587 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_2648 hypothetical protein; hypothetical protein 852643..853587 Variovorax paradoxus S110 7975577 YP_002947962.1 CDS Vapar_6132 NC_012792.1 853608 854675 D PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 853608..854675 Variovorax paradoxus S110 7975578 YP_002947963.1 CDS Vapar_6133 NC_012792.1 854725 855978 D KEGG: rle:pRL120099 putative substrate-binding component of ABC transporter; putative substrate-binding component of ABC transporter 854725..855978 Variovorax paradoxus S110 7975579 YP_002947964.1 CDS Vapar_6134 NC_012792.1 855987 856706 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: avi:Avi_7437 ABC transporter nucleotide binding/ATPase protein; ABC transporter 855987..856706 Variovorax paradoxus S110 7975580 YP_002947965.1 CDS Vapar_6135 NC_012792.1 856834 857550 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO2268 high-affinity branched-chain amino acid ABC transporter ATP-binding protein; ABC transporter 856834..857550 Variovorax paradoxus S110 7975581 YP_002947966.1 CDS Vapar_6136 NC_012792.1 857543 858415 D PFAM: inner-membrane translocator; KEGG: avi:Avi_7434 ABC transporter membrane spanning protein (branched chain amino acid); inner-membrane translocator 857543..858415 Variovorax paradoxus S110 7975582 YP_002947967.1 CDS Vapar_6137 NC_012792.1 858421 859479 D PFAM: inner-membrane translocator; KEGG: rle:pRL120095 putative permease component of ABC transporter; inner-membrane translocator 858421..859479 Variovorax paradoxus S110 7975583 YP_002947968.1 CDS Vapar_6138 NC_012792.1 859463 860326 D PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: vei:Veis_4613 catechol 1,2-dioxygenase; intradiol ring-cleavage dioxygenase 859463..860326 Variovorax paradoxus S110 7975584 YP_002947969.1 CDS Vapar_6140 NC_012792.1 860940 861908 D hypothetical protein 860940..861908 Variovorax paradoxus S110 7975586 YP_002947970.1 CDS Vapar_6141 NC_012792.1 862060 863091 R PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: pna:Pnap_0047 periplasmic binding protein/LacI transcriptional regulator; transcriptional regulator, LacI family complement(862060..863091) Variovorax paradoxus S110 7975587 YP_002947971.1 CDS Vapar_6142 NC_012792.1 863283 864635 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: pst:PSPTO_3565 gluconate permease; gluconate transporter 863283..864635 Variovorax paradoxus S110 7975588 YP_002947972.1 CDS Vapar_6143 NC_012792.1 864651 866210 D TIGRFAM: gluconate kinase; PFAM: carbohydrate kinase FGGY; KEGG: sugar kinase ; K00851 gluconokinase; gluconate kinase 864651..866210 Variovorax paradoxus S110 7975589 YP_002947973.1 CDS Vapar_6144 NC_012792.1 866250 867155 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: lch:Lcho_3182 AraC family transcriptional regulator; AraC family transcriptional regulator 866250..867155 Variovorax paradoxus S110 7975590 YP_002947974.1 CDS Vapar_6145 NC_012792.1 867323 868321 D PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4598 hypothetical protein; hypothetical protein 867323..868321 Variovorax paradoxus S110 7975021 YP_002947975.1 CDS Vapar_6146 NC_012792.1 868335 869138 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_B1007 enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase 868335..869138 Variovorax paradoxus S110 7975022 YP_002947976.1 CDS Vapar_6147 NC_012792.1 869135 871231 D PFAM: CoA-binding domain protein; ATP-grasp domain protein; KEGG: dac:Daci_1759 CoA-binding domain-containing protein; CoA-binding domain protein 869135..871231 Variovorax paradoxus S110 7975023 YP_002947977.1 CDS Vapar_6148 NC_012792.1 871264 872592 D PFAM: MmgE/PrpD family protein; KEGG: dac:Daci_1760 MmgE/PrpD family protein; MmgE/PrpD family protein 871264..872592 Variovorax paradoxus S110 7975024 YP_002947978.1 CDS Vapar_6149 NC_012792.1 872634 874274 R PFAM: Tannase and feruloyl esterase; KEGG: bcm:Bcenmc03_3537 tannase and feruloyl esterase; Feruloyl esterase complement(872634..874274) Variovorax paradoxus S110 7975025 YP_002947979.1 CDS Vapar_6150 NC_012792.1 874440 875120 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: reu:Reut_A0259 cyclic nucleotide-binding protein; transcriptional regulator, Crp/Fnr family complement(874440..875120) Variovorax paradoxus S110 7975026 YP_002947980.1 CDS Vapar_6151 NC_012792.1 875316 876287 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpt:Bpet3900 LysR family transcriptional regulator; LysR family transcriptional regulator 875316..876287 Variovorax paradoxus S110 7975027 YP_002947981.1 CDS Vapar_6152 NC_012792.1 876436 877317 D PFAM: alpha/beta hydrolase fold; KEGG: plu:plu2160 hypothetical protein; alpha/beta hydrolase fold protein 876436..877317 Variovorax paradoxus S110 7975028 YP_002947982.1 CDS Vapar_6153 NC_012792.1 877344 877919 D PFAM: Carboxymuconolactone decarboxylase; KEGG: bpt:Bpet3902 hypothetical protein; Carboxymuconolactone decarboxylase 877344..877919 Variovorax paradoxus S110 7975029 YP_002947983.1 CDS Vapar_6154 NC_012792.1 877916 878740 D PFAM: amidohydrolase 2; KEGG: bbr:BB4878 putative hydrolase; amidohydrolase 2 877916..878740 Variovorax paradoxus S110 7975030 YP_002947984.1 CDS Vapar_6155 NC_012792.1 878751 879368 R PFAM: Glutathione S-transferase domain; KEGG: bpt:Bpet3903 hypothetical protein; Glutathione S-transferase domain protein complement(878751..879368) Variovorax paradoxus S110 7975031 YP_002947985.1 CDS Vapar_6156 NC_012792.1 879372 880601 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet3895 acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F complement(879372..880601) Variovorax paradoxus S110 7975032 YP_002947986.1 CDS Vapar_6157 NC_012792.1 880797 881765 D PFAM: conserved hypothetical protein; KEGG: bbr:BB4785 hypothetical protein; hypothetical protein 880797..881765 Variovorax paradoxus S110 7975033 YP_002947987.1 CDS Vapar_6158 NC_012792.1 881791 883023 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc2020 acyl-CoA dehydrogenase oxidoreductase protein; acyl-CoA dehydrogenase domain protein complement(881791..883023) Variovorax paradoxus S110 7975034 YP_002947988.1 CDS Vapar_6159 NC_012792.1 883158 883934 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(883158..883934) Variovorax paradoxus S110 7975035 YP_002947989.1 CDS Vapar_6160 NC_012792.1 884114 887137 D KEGG: rso:RS01984 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein; diguanylate cyclase with PAS/PAC sensor 884114..887137 Variovorax paradoxus S110 7975036 YP_002947990.1 CDS Vapar_6161 NC_012792.1 887173 888513 R PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: pfo:Pfl01_2254 epoxide hydrolase-like; Microsomal epoxide hydrolase complement(887173..888513) Variovorax paradoxus S110 7975037 YP_002947991.1 CDS Vapar_6162 NC_012792.1 888604 889419 R PFAM: alpha/beta hydrolase fold; KEGG: pfo:Pfl01_2257 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(888604..889419) Variovorax paradoxus S110 7975038 YP_002947992.1 CDS Vapar_6163 NC_012792.1 889758 890327 D KEGG: pfo:Pfl01_2256 putative cytochrome P460; putative cytochrome P460 889758..890327 Variovorax paradoxus S110 7975039 YP_002947993.1 CDS Vapar_6164 NC_012792.1 890421 890984 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpt:Mpe_B0295 hypothetical protein; HNH endonuclease complement(890421..890984) Variovorax paradoxus S110 7975040 YP_002947994.1 CDS Vapar_6165 NC_012792.1 893373 893747 D KEGG: mpt:Mpe_B0291 hypothetical protein; hypothetical protein 893373..893747 Variovorax paradoxus S110 7975055 YP_002947995.1 CDS Vapar_6166 NC_012792.1 893899 894276 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bam:Bamb_5741 response regulator receiver protein; response regulator receiver protein complement(893899..894276) Variovorax paradoxus S110 7975056 YP_002947996.1 CDS Vapar_6167 NC_012792.1 894431 897316 R PFAM: transcriptional regulator domain protein; Tetratricopeptide TPR_4; KEGG: bja:bll1195 transcriptional regulator; transcriptional regulator, winged helix family complement(894431..897316) Variovorax paradoxus S110 7975057 YP_002947997.1 CDS Vapar_6168 NC_012792.1 897530 898543 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bac:BamMC406_6493 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(897530..898543) Variovorax paradoxus S110 7975058 YP_002947998.1 CDS Vapar_6169 NC_012792.1 898701 899366 R PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bac:BamMC406_6495 two component LuxR family transcriptional regulator; two component transcriptional regulator, LuxR family complement(898701..899366) Variovorax paradoxus S110 7975059 YP_002947999.1 CDS Vapar_6170 NC_012792.1 899378 904624 R PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; serine/threonine protein kinase; histidine kinase A domain protein; KEGG: bam:Bamb_5743 ATPase domain-containing protein; multi-sensor signal transduction multi-kinase complement(899378..904624) Variovorax paradoxus S110 7975060 YP_002948000.1 CDS Vapar_6171 NC_012792.1 904978 905361 D hypothetical protein 904978..905361 Variovorax paradoxus S110 7975061 YP_002948001.1 CDS Vapar_6172 NC_012792.1 905378 905941 D PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: bpy:Bphyt_4602 redoxin domain protein; Redoxin domain protein 905378..905941 Variovorax paradoxus S110 7975062 YP_002948002.1 CDS Vapar_6173 NC_012792.1 906365 906973 R PFAM: regulatory protein TetR; KEGG: rso:RSc0635 transcription regulator protein; TetR family transcriptional regulator complement(906365..906973) Variovorax paradoxus S110 7975063 YP_002948003.1 CDS Vapar_6174 NC_012792.1 907061 907996 D PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rlt:Rleg2_2309 alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase GroES domain protein 907061..907996 Variovorax paradoxus S110 7975064 YP_002948004.1 CDS Vapar_6175 NC_012792.1 908086 908406 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: she:Shewmr4_0406 antibiotic biosynthesis monooxygenase; Antibiotic biosynthesis monooxygenase complement(908086..908406) Variovorax paradoxus S110 7975065 YP_002948005.1 CDS Vapar_6176 NC_012792.1 908464 908937 R hypothetical protein complement(908464..908937) Variovorax paradoxus S110 7975066 YP_002948006.1 CDS Vapar_6177 NC_012792.1 908982 909770 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(908982..909770) Variovorax paradoxus S110 7975067 YP_002948007.1 CDS Vapar_6178 NC_012792.1 909872 910462 D PFAM: regulatory protein TetR; KEGG: reu:Reut_C6284 regulatory protein, TetR; TetR family transcriptional regulator 909872..910462 Variovorax paradoxus S110 7975068 YP_002948008.1 CDS Vapar_6179 NC_012792.1 910511 911482 R PFAM: conserved hypothetical protein; KEGG: dia:Dtpsy_0467 hypothetical protein; hypothetical protein complement(910511..911482) Variovorax paradoxus S110 7975069 YP_002948009.1 CDS Vapar_6180 NC_012792.1 911561 912028 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase complement(911561..912028) Variovorax paradoxus S110 7975070 YP_002948010.1 CDS Vapar_6181 NC_012792.1 912076 913689 R PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3769 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(912076..913689) Variovorax paradoxus S110 7975071 YP_002948011.1 CDS Vapar_6182 NC_012792.1 913890 914795 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbr:BB1112 LysR family transcriptional regulator; LysR family transcriptional regulator complement(913890..914795) Variovorax paradoxus S110 7975072 YP_002948012.1 CDS Vapar_6183 NC_012792.1 914854 916353 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: oca:OCAR_5203 integral membrane protein; hypothetical protein complement(914854..916353) Variovorax paradoxus S110 7975073 YP_002948013.1 CDS Vapar_6184 NC_012792.1 916362 916871 R KEGG: smd:Smed_0362 putative tricarboxylic transport membrane protein; putative tricarboxylic transport membrane protein complement(916362..916871) Variovorax paradoxus S110 7975074 YP_002948014.1 CDS Vapar_6185 NC_012792.1 916868 917854 R PFAM: conserved hypothetical protein; KEGG: oca:OCAR_5201 trap-t family transporter, periplasmic binding protein; hypothetical protein complement(916868..917854) Variovorax paradoxus S110 7975075 YP_002948015.1 CDS Vapar_6186 NC_012792.1 917883 918866 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3870 uncharacterized protein UPF0065; hypothetical protein complement(917883..918866) Variovorax paradoxus S110 7975076 YP_002948016.1 CDS Vapar_6187 NC_012792.1 918914 919966 R KEGG: bph:Bphy_6877 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(918914..919966) Variovorax paradoxus S110 7975077 YP_002948017.1 CDS acnA NC_012792.1 920232 922871 D catalyzes the conversion of citrate to isocitrate; aconitate hydratase 920232..922871 Variovorax paradoxus S110 7975078 YP_002948018.1 CDS Vapar_6189 NC_012792.1 922902 923798 D PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_3872 transcriptional regulator, GntR family; GntR family transcriptional regulator 922902..923798 Variovorax paradoxus S110 7975079 YP_002948019.1 CDS Vapar_6190 NC_012792.1 923803 924624 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: pol:Bpro_3873 extracellular solute-binding protein, family 3; extracellular solute-binding protein family 3 923803..924624 Variovorax paradoxus S110 7975080 YP_002948020.1 CDS Vapar_6191 NC_012792.1 924572 925489 R PFAM: LysR substrate-binding; regulatory protein LysR; helix-turn-helix Fis-type; KEGG: dac:Daci_0968 LysR family transcriptional regulator; LysR family transcriptional regulator complement(924572..925489) Variovorax paradoxus S110 7975081 YP_002948021.1 CDS Vapar_6192 NC_012792.1 925562 926236 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dac:Daci_0969 HAD family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) 925562..926236 Variovorax paradoxus S110 7975082 YP_002948022.1 CDS Vapar_6193 NC_012792.1 926264 927250 D PFAM: conserved hypothetical protein; KEGG: dac:Daci_0970 hypothetical protein; hypothetical protein 926264..927250 Variovorax paradoxus S110 7975083 YP_002948023.1 CDS Vapar_6194 NC_012792.1 927257 928411 D PFAM: alanine racemase domain protein; KEGG: dac:Daci_0971 alanine racemase domain-containing protein; alanine racemase domain protein 927257..928411 Variovorax paradoxus S110 7975084 YP_002948024.1 CDS Vapar_6195 NC_012792.1 928401 928817 D PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB0442 hypothetical protein; Endoribonuclease L-PSP 928401..928817 Variovorax paradoxus S110 7975085 YP_002948025.1 CDS Vapar_6196 NC_012792.1 928886 929179 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: eba:ebB201 hypothetical protein; prevent-host-death family protein 928886..929179 Variovorax paradoxus S110 7975086 YP_002948026.1 CDS Vapar_6197 NC_012792.1 929189 929845 R PFAM: bifunctional deaminase-reductase domain protein; KEGG: cvi:CV_3295 hypothetical protein; bifunctional deaminase-reductase domain protein complement(929189..929845) Variovorax paradoxus S110 7975087 YP_002948027.1 CDS Vapar_6198 NC_012792.1 929921 930715 D KEGG: mpt:Mpe_A0981 hypothetical protein; hypothetical protein 929921..930715 Variovorax paradoxus S110 7975088 YP_002948028.1 CDS Vapar_6199 NC_012792.1 930727 931653 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: spe:Spro_2417 LysR family transcriptional regulator; LysR family transcriptional regulator complement(930727..931653) Variovorax paradoxus S110 7975089 YP_002948029.1 CDS Vapar_6200 NC_012792.1 931759 933204 D PFAM: major facilitator superfamily MFS_1; KEGG: scl:sce1119 hypothetical protein; major facilitator superfamily MFS_1 931759..933204 Variovorax paradoxus S110 7975090 YP_002948030.1 CDS Vapar_6201 NC_012792.1 933173 934066 R PFAM: alpha/beta hydrolase fold; KEGG: scl:sce7520 putative hydrolase; alpha/beta hydrolase fold protein complement(933173..934066) Variovorax paradoxus S110 7975091 YP_002948031.1 CDS Vapar_6202 NC_012792.1 934271 934720 D hypothetical protein 934271..934720 Variovorax paradoxus S110 7975092 YP_002948032.1 CDS Vapar_6203 NC_012792.1 934839 935300 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bte:BTH_I0996 carboxymuconolactone decarboxylase family protein; alkylhydroperoxidase like protein, AhpD family complement(934839..935300) Variovorax paradoxus S110 7975093 YP_002948033.1 CDS Vapar_6204 NC_012792.1 935457 936056 D PFAM: regulatory protein TetR; KEGG: pna:Pnap_1293 TetR family transcriptional regulator; TetR family transcriptional regulator 935457..936056 Variovorax paradoxus S110 7975094 YP_002948034.1 CDS Vapar_6205 NC_012792.1 936135 936959 D PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: pol:Bpro_0106 short chain dehydrogenase; short chain dehydrogenase 936135..936959 Variovorax paradoxus S110 7975095 YP_002948035.1 CDS Vapar_6206 NC_012792.1 937006 937992 D TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_0309 zinc-binding alcohol dehydrogenase; quinone oxidoreductase, YhdH/YhfP family 937006..937992 Variovorax paradoxus S110 7975096 YP_002948036.1 CDS Vapar_6207 NC_012792.1 938015 938848 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_0310 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 938015..938848 Variovorax paradoxus S110 7975097 YP_002948037.1 CDS Vapar_6208 NC_012792.1 938797 939357 R PFAM: DinB family protein; KEGG: rlt:Rleg2_2157 DinB family protein; DinB family protein complement(938797..939357) Variovorax paradoxus S110 7975098 YP_002948038.1 CDS Vapar_6209 NC_012792.1 939444 940070 D PFAM: regulatory protein TetR; KEGG: bja:blr4990 transcriptional regulatory protein; TetR family transcriptional regulator 939444..940070 Variovorax paradoxus S110 7975099 YP_002948039.1 CDS Vapar_6210 NC_012792.1 940114 940995 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xac:XAC0039 transcriptional regulator; LysR family transcriptional regulator complement(940114..940995) Variovorax paradoxus S110 7975100 YP_002948040.1 CDS Vapar_6211 NC_012792.1 941099 942043 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ppw:PputW619_3133 alcohol dehydrogenase; Alcohol dehydrogenase zinc-binding domain protein 941099..942043 Variovorax paradoxus S110 7975101 YP_002948041.1 CDS Vapar_6212 NC_012792.1 942086 942955 D PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; polysaccharide biosynthesis protein CapD; KEGG: xac:XAC0038 hypothetical protein; NmrA family protein 942086..942955 Variovorax paradoxus S110 7975615 YP_002948042.1 CDS Vapar_6213 NC_012792.1 943259 944431 D PFAM: beta-lactamase; KEGG: har:HEAR1491 putative 6-aminohexanoate-dimer hydrolase; beta-lactamase 943259..944431 Variovorax paradoxus S110 7975429 YP_002948043.1 CDS Vapar_6214 NC_012792.1 944467 945723 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_1813 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(944467..945723) Variovorax paradoxus S110 7975430 YP_002948044.1 CDS Vapar_6215 NC_012792.1 945798 946577 R PFAM: regulatory protein IclR; SMART: regulatory protein IclR; KEGG: rme:Rmet_1818 transcriptional regulator, IclR family; transcriptional regulator, IclR family complement(945798..946577) Variovorax paradoxus S110 7975431 YP_002948045.1 CDS Vapar_6216 NC_012792.1 946574 947356 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: rme:Rmet_1817 transcriptional regulator, IclR family; transcriptional regulator, IclR family complement(946574..947356) Variovorax paradoxus S110 7975432 YP_002948046.1 CDS Vapar_6217 NC_012792.1 947502 948470 D PFAM: conserved hypothetical protein; KEGG: rme:Rmet_1815 uncharacterized protein UPF0065; hypothetical protein 947502..948470 Variovorax paradoxus S110 7975433 YP_002948047.1 CDS Vapar_6218 NC_012792.1 948513 949685 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_1816 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain protein 948513..949685 Variovorax paradoxus S110 7975434 YP_002948048.1 CDS Vapar_6219 NC_012792.1 949685 950848 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_2503 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain protein 949685..950848 Variovorax paradoxus S110 7975435 YP_002948049.1 CDS Vapar_6220 NC_012792.1 950854 951297 R PFAM: MaoC domain protein dehydratase; KEGG: mno:Mnod_7894 MaoC domain protein dehydratase; MaoC domain protein dehydratase complement(950854..951297) Variovorax paradoxus S110 7975436 YP_002948050.1 CDS Vapar_6221 NC_012792.1 951290 952942 R PFAM: AMP-dependent synthetase and ligase; KEGG: bph:Bphy_4911 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(951290..952942) Variovorax paradoxus S110 7975437 YP_002948051.1 CDS Vapar_6222 NC_012792.1 952939 953679 R PFAM: nitroreductase; KEGG: bph:Bphy_4912 nitroreductase; nitroreductase complement(952939..953679) Variovorax paradoxus S110 7975438 YP_002948052.1 CDS Vapar_6223 NC_012792.1 953815 954834 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bph:Bphy_4913 AraC family transcriptional regulator; AraC family transcriptional regulator complement(953815..954834) Variovorax paradoxus S110 7975439 YP_002948053.1 CDS Vapar_6224 NC_012792.1 955352 955876 R TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: rme:Rmet_2886 Signal peptidase II. Aspartic peptidase. MEROPS family A08; lipoprotein signal peptidase complement(955352..955876) Variovorax paradoxus S110 7975440 YP_002948054.1 CDS Vapar_6225 NC_012792.1 956065 956391 R PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: reu:Reut_B5694 ethyl tert-butyl ether degradation EthD; Ethyl tert-butyl ether degradation EthD complement(956065..956391) Variovorax paradoxus S110 7975441 YP_002948055.1 CDS Vapar_6226 NC_012792.1 956452 957006 R KEGG: bur:Bcep18194_B0960 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(956452..957006) Variovorax paradoxus S110 7975442 YP_002948056.1 CDS Vapar_6227 NC_012792.1 957079 957402 D PFAM: helix-turn-helix HxlR type; KEGG: bur:Bcep18194_B0961 putative transcriptional regulator; transcriptional regulator, HxlR family 957079..957402 Variovorax paradoxus S110 7975443 YP_002948057.1 CDS Vapar_6228 NC_012792.1 957597 958418 R PFAM: putative esterase; KEGG: sdn:Sden_3719 putative esterase; putative esterase complement(957597..958418) Variovorax paradoxus S110 7975444 YP_002948058.1 CDS Vapar_6229 NC_012792.1 958563 961049 R KEGG: pmr:PMI0559 hypothetical protein; hypothetical protein complement(958563..961049) Variovorax paradoxus S110 7975445 YP_002948059.1 CDS Vapar_6230 NC_012792.1 961127 962248 R PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pmr:PMI0560 ATPase; ATPase associated with various cellular activities AAA_5 complement(961127..962248) Variovorax paradoxus S110 7975446 YP_002948060.1 CDS Vapar_6231 NC_012792.1 962292 966119 R PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: pmr:PMI0561 hypothetical protein; PBS lyase HEAT domain protein repeat-containing protein complement(962292..966119) Variovorax paradoxus S110 7975447 YP_002948061.1 CDS Vapar_6232 NC_012792.1 966214 968283 R PFAM: zinc finger SWIM domain protein; KEGG: pmr:PMI0557 hypothetical protein; zinc finger SWIM domain protein complement(966214..968283) Variovorax paradoxus S110 7975448 YP_002948062.1 CDS Vapar_6233 NC_012792.1 968283 969410 R PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: pmr:PMI0558 hypothetical protein; VWA containing CoxE family protein complement(968283..969410) Variovorax paradoxus S110 7975449 YP_002948063.1 CDS Vapar_6234 NC_012792.1 969737 969871 D hypothetical protein 969737..969871 Variovorax paradoxus S110 7975450 YP_002948064.1 CDS Vapar_6235 NC_012792.1 970018 970740 R hypothetical protein complement(970018..970740) Variovorax paradoxus S110 7975451 YP_002948065.1 CDS Vapar_6236 NC_012792.1 971437 972060 R PFAM: integrase family protein; KEGG: psa:PST_3407 site-specific recombinase, phage integrase family; integrase family protein complement(971437..972060) Variovorax paradoxus S110 7975452 YP_002948066.1 CDS Vapar_6237 NC_012792.1 972553 973026 R hypothetical protein complement(972553..973026) Variovorax paradoxus S110 7975453 YP_002948067.1 CDS Vapar_6238 NC_012792.1 973877 974299 R hypothetical protein complement(973877..974299) Variovorax paradoxus S110 7975454 YP_002948068.1 CDS Vapar_6239 NC_012792.1 974712 975140 R hypothetical protein complement(974712..975140) Variovorax paradoxus S110 7975455 YP_002948069.1 CDS Vapar_6240 NC_012792.1 976422 976736 R KEGG: pfl:PFL_2410 hypothetical protein; hypothetical protein complement(976422..976736) Variovorax paradoxus S110 7975456 YP_002948070.1 CDS Vapar_6241 NC_012792.1 977515 978192 D PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: bra:BRADO5333 putative exported protein; Isoprenylcysteine carboxyl methyltransferase 977515..978192 Variovorax paradoxus S110 7975457 YP_002948071.1 CDS Vapar_6242 NC_012792.1 978465 980258 D KEGG: mpt:Mpe_A0473 quinoprotein ethanol dehydrogenase, putative; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; PQQ-dependent dehydrogenase, methanol/ethanol family 978465..980258 Variovorax paradoxus S110 7975458 YP_002948072.1 CDS Vapar_6243 NC_012792.1 980269 980613 D PFAM: High potential iron-sulfur protein; KEGG: bph:Bphy_0107 high potential iron-sulfur protein; High potential iron-sulfur protein 980269..980613 Variovorax paradoxus S110 7975459 YP_002948073.1 CDS Vapar_6244 NC_012792.1 980626 980817 R KEGG: pna:Pnap_3962 ApbE family lipoprotein; ApbE family lipoprotein complement(980626..980817) Variovorax paradoxus S110 7975460 YP_002948074.1 CDS Vapar_6245 NC_012792.1 980839 981633 R PFAM: ApbE family lipoprotein; KEGG: pna:Pnap_3962 ApbE family lipoprotein; ApbE family lipoprotein complement(980839..981633) Variovorax paradoxus S110 7975461 YP_002948075.1 CDS Vapar_6246 NC_012792.1 981630 983738 R PFAM: FMN-binding domain protein; KEGG: pna:Pnap_3961 regulatory protein, putative; nitrous oxide expression regulator, NosR complement(981630..983738) Variovorax paradoxus S110 7975462 YP_002948076.1 CDS Vapar_6247 NC_012792.1 983735 984667 R possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB complement(983735..984667) Variovorax paradoxus S110 7975463 YP_002948077.1 CDS Vapar_6248 NC_012792.1 984827 986953 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: lch:Lcho_1790 fis family GAF modulated sigma54 specific transcriptional regulator; GAF modulated sigma54 specific transcriptional regulator, Fis family complement(984827..986953) Variovorax paradoxus S110 7975464 YP_002948078.1 CDS Vapar_6249 NC_012792.1 987234 987728 D KEGG: lch:Lcho_1789 cytochrome c550; cytochrome c550 987234..987728 Variovorax paradoxus S110 7975465 YP_002948079.1 CDS Vapar_6250 NC_012792.1 987739 988596 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: lch:Lcho_1788 periplasmic binding protein, putative; extracellular solute-binding protein family 3 987739..988596 Variovorax paradoxus S110 7975466 YP_002948080.1 CDS Vapar_6251 NC_012792.1 988689 990683 D TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: aav:Aave_1499 acetyl-coenzyme A synthetase; acetate/CoA ligase 988689..990683 Variovorax paradoxus S110 7975467 YP_002948081.1 CDS Vapar_6252 NC_012792.1 990805 991260 D hypothetical protein 990805..991260 Variovorax paradoxus S110 7975468 YP_002948082.1 CDS Vapar_6253 NC_012792.1 991280 992368 R PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: reu:Reut_B5477 regulatory protein, LuxR; transcriptional regulator, LuxR family complement(991280..992368) Variovorax paradoxus S110 7975469 YP_002948083.1 CDS Vapar_6254 NC_012792.1 992623 993456 D PFAM: alpha/beta hydrolase fold; KEGG: bpy:Bphyt_4957 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 992623..993456 Variovorax paradoxus S110 7975470 YP_002948084.1 CDS Vapar_6255 NC_012792.1 993478 993753 R hypothetical protein complement(993478..993753) Variovorax paradoxus S110 7975471 YP_002948085.1 CDS Vapar_6256 NC_012792.1 993901 994872 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ppf:Pput_3187 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding complement(993901..994872) Variovorax paradoxus S110 7975472 YP_002948086.1 CDS Vapar_6257 NC_012792.1 994887 995879 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B0202 probable extra-cytoplasmic solute receptor; hypothetical protein complement(994887..995879) Variovorax paradoxus S110 7975473 YP_002948087.1 CDS Vapar_6258 NC_012792.1 996066 996830 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: dac:Daci_1756 IclR family transcriptional regulator; transcriptional regulator, IclR family 996066..996830 Variovorax paradoxus S110 7975474 YP_002948088.1 CDS Vapar_6259 NC_012792.1 996935 997747 D PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: mlo:mll4858 ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase type 11 996935..997747 Variovorax paradoxus S110 7975475 YP_002948089.1 CDS Vapar_6260 NC_012792.1 997947 998945 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3809 uncharacterized protein UPF0065; hypothetical protein 997947..998945 Variovorax paradoxus S110 7975476 YP_002948090.1 CDS Vapar_6261 NC_012792.1 998986 1000740 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 998986..1000740 Variovorax paradoxus S110 7975477 YP_002948091.1 CDS Vapar_6262 NC_012792.1 1000742 1001614 D PFAM: amidohydrolase 2; KEGG: pol:Bpro_3820 amidohydrolase 2; amidohydrolase 2 1000742..1001614 Variovorax paradoxus S110 7975478 YP_002948092.1 CDS Vapar_6263 NC_012792.1 1001602 1002516 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_3812 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1001602..1002516) Variovorax paradoxus S110 7975479 YP_002948093.1 CDS Vapar_6264 NC_012792.1 1002649 1003569 D PFAM: dihydrodipicolinate synthetase; KEGG: pol:Bpro_3814 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 1002649..1003569 Variovorax paradoxus S110 7975480 YP_002948094.1 CDS Vapar_6265 NC_012792.1 1003635 1004966 D PFAM: extracellular solute-binding protein family 1; KEGG: pol:Bpro_3815 extracellular solute-binding protein, family 1; extracellular solute-binding protein family 1 1003635..1004966 Variovorax paradoxus S110 7975481 YP_002948095.1 CDS Vapar_6266 NC_012792.1 1004992 1005954 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3816 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1004992..1005954 Variovorax paradoxus S110 7975482 YP_002948096.1 CDS Vapar_6267 NC_012792.1 1005959 1006849 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3817 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1005959..1006849 Variovorax paradoxus S110 7975483 YP_002948097.1 CDS Vapar_6268 NC_012792.1 1006902 1008020 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_3818 ABC transporter related; ABC transporter 1006902..1008020 Variovorax paradoxus S110 7975484 YP_002948098.1 CDS Vapar_6269 NC_012792.1 1008017 1009054 D PFAM: oxidoreductase domain protein; KEGG: pol:Bpro_3819 oxidoreductase-like; oxidoreductase domain protein 1008017..1009054 Variovorax paradoxus S110 7975485 YP_002948099.1 CDS Vapar_6270 NC_012792.1 1009195 1010217 D PFAM: alpha/beta hydrolase fold; KEGG: sme:SM_b20216 putative epoxide hydrolase protein; alpha/beta hydrolase fold protein 1009195..1010217 Variovorax paradoxus S110 7975486 YP_002948100.1 CDS Vapar_6271 NC_012792.1 1010231 1011661 D PFAM: Aldehyde Dehydrogenase; KEGG: pfo:Pfl01_2261 aldehyde dehydrogenase; Aldehyde Dehydrogenase 1010231..1011661 Variovorax paradoxus S110 7975487 YP_002948101.1 CDS Vapar_6272 NC_012792.1 1011799 1012707 D PFAM: glycosyl transferase family 14; KEGG: dsh:Dshi_0678 glycosyl transferase family protein; glycosyl transferase family 14 1011799..1012707 Variovorax paradoxus S110 7975488 YP_002948102.1 CDS Vapar_6273 NC_012792.1 1012801 1013040 D hypothetical protein 1012801..1013040 Variovorax paradoxus S110 7975489 YP_002948103.1 CDS Vapar_6274 NC_012792.1 1013051 1013320 D hypothetical protein 1013051..1013320 Variovorax paradoxus S110 7975490 YP_002948104.1 CDS Vapar_6275 NC_012792.1 1013336 1013992 D hypothetical protein 1013336..1013992 Variovorax paradoxus S110 7975491 YP_002948105.1 CDS Vapar_6276 NC_012792.1 1014031 1014339 D KEGG: dac:Daci_5158 CopG/Arc/MetJ family addiction module antidote protein; hypothetical protein 1014031..1014339 Variovorax paradoxus S110 7975492 YP_002948106.1 CDS Vapar_6277 NC_012792.1 1014773 1015066 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: dsh:Dshi_3392 antibiotic biosynthesis monooxygenase; Antibiotic biosynthesis monooxygenase complement(1014773..1015066) Variovorax paradoxus S110 7975493 YP_002948107.1 CDS Vapar_6278 NC_012792.1 1015090 1016058 R PFAM: conserved hypothetical protein; KEGG: dia:Dtpsy_1041 hypothetical protein; hypothetical protein complement(1015090..1016058) Variovorax paradoxus S110 7975494 YP_002948108.1 CDS Vapar_6279 NC_012792.1 1016131 1017222 R PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: bra:BRADO2458 putative 3-isopropylmalate dehydrogenase (LeuB); 3-isopropylmalate dehydrogenase complement(1016131..1017222) Variovorax paradoxus S110 7975495 YP_002948109.1 CDS Vapar_6280 NC_012792.1 1017281 1017982 R PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bxe:Bxe_B0453 GntR family transcriptional regulator; GntR family transcriptional regulator complement(1017281..1017982) Variovorax paradoxus S110 7975496 YP_002948110.1 CDS Vapar_6281 NC_012792.1 1018137 1018871 D PFAM: NUDIX hydrolase; KEGG: dac:Daci_5757 NUDIX hydrolase; NUDIX hydrolase 1018137..1018871 Variovorax paradoxus S110 7975497 YP_002948111.1 CDS Vapar_6282 NC_012792.1 1018944 1019807 D KEGG: pna:Pnap_3720 hypothetical protein; hypothetical protein 1018944..1019807 Variovorax paradoxus S110 7975498 YP_002948112.1 CDS Vapar_6283 NC_012792.1 1019833 1021020 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1019833..1021020 Variovorax paradoxus S110 7975499 YP_002948113.1 CDS Vapar_6284 NC_012792.1 1021026 1022726 D KEGG: pna:Pnap_3718 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase 1021026..1022726 Variovorax paradoxus S110 7975500 YP_002948114.1 CDS Vapar_6285 NC_012792.1 1022737 1023813 D TIGRFAM: cytidyltransferase-related domain protein; PFAM: NUDIX hydrolase; cytidylyltransferase; KEGG: pna:Pnap_3717 cytidyltransferase-like protein; cytidyltransferase-related domain protein 1022737..1023813 Variovorax paradoxus S110 7975501 YP_002948115.1 CDS Vapar_6286 NC_012792.1 1023810 1024715 D PFAM: ADP-ribosylation/Crystallin J1; KEGG: pfo:Pfl01_3893 ADP-ribosylation/crystallin J1; ADP-ribosylation/Crystallin J1 1023810..1024715 Variovorax paradoxus S110 7975502 YP_002948116.1 CDS Vapar_6287 NC_012792.1 1024938 1026767 D PFAM: Tannase and feruloyl esterase; KEGG: bcm:Bcenmc03_6136 feruloyl esterase; Tannase and feruloyl esterase 1024938..1026767 Variovorax paradoxus S110 7975503 YP_002948117.1 CDS Vapar_6288 NC_012792.1 1026845 1027519 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: mms:mma_2922 two components system response regulator; two component transcriptional regulator, winged helix family 1026845..1027519 Variovorax paradoxus S110 7975504 YP_002948118.1 CDS Vapar_6289 NC_012792.1 1027506 1028897 D PFAM: ATP-binding region ATPase domain protein; Two-component sensor kinase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mms:mma_2921 two-components system response regulator; histidine kinase 1027506..1028897 Variovorax paradoxus S110 7975505 YP_002948119.1 CDS Vapar_6290 NC_012792.1 1029050 1029745 D PFAM: Integral membrane protein TerC; KEGG: mms:mma_3177 TerC family integral membrane protein; Integral membrane protein TerC 1029050..1029745 Variovorax paradoxus S110 7975506 YP_002948120.1 CDS Vapar_6291 NC_012792.1 1029759 1030193 D KEGG: har:HEAR2686 putative universal stress protein (Usp); putative universal stress protein (Usp) 1029759..1030193 Variovorax paradoxus S110 7975507 YP_002948121.1 CDS Vapar_6292 NC_012792.1 1030229 1030648 R KEGG: ret:RHE_CH03280 hypothetical protein; hypothetical protein complement(1030229..1030648) Variovorax paradoxus S110 7975508 YP_002948122.1 CDS Vapar_6293 NC_012792.1 1030645 1031091 R PFAM: protein of unknown function DUF1452; KEGG: cak:Caul_1265 hypothetical protein; hypothetical protein complement(1030645..1031091) Variovorax paradoxus S110 7975509 YP_002948123.1 CDS Vapar_6294 NC_012792.1 1031288 1031776 D KEGG: noc:Noc_1447 hypothetical protein; hypothetical protein 1031288..1031776 Variovorax paradoxus S110 7975616 YP_002948124.1 CDS Vapar_6295 NC_012792.1 1031799 1033571 R KEGG: aav:Aave_4005 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; ATP-dependent DNA helicase, RecQ family complement(1031799..1033571) Variovorax paradoxus S110 7975617 YP_002948125.1 CDS Vapar_6296 NC_012792.1 1033726 1034076 R hypothetical protein complement(1033726..1034076) Variovorax paradoxus S110 7975618 YP_002948126.1 CDS Vapar_6297 NC_012792.1 1034210 1034584 D PFAM: protein of unknown function DUF454; KEGG: mfa:Mfla_1115 hypothetical protein; hypothetical protein 1034210..1034584 Variovorax paradoxus S110 7975619 YP_002948127.1 CDS Vapar_6298 NC_012792.1 1034588 1035610 R PFAM: integrase family protein; KEGG: bmj:BMULJ_03197 tyrosine recombinase; integrase family protein complement(1034588..1035610) Variovorax paradoxus S110 7975620 YP_002948128.1 CDS Vapar_6299 NC_012792.1 1035700 1038846 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: bmj:BMULJ_06280 copper efflux system membrane protein; heavy metal efflux pump, CzcA family complement(1035700..1038846) Variovorax paradoxus S110 7975621 YP_002948129.1 CDS Vapar_6300 NC_012792.1 1038843 1040345 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bam:Bamb_5181 RND family efflux transporter MFP subunit; efflux transporter, RND family, MFP subunit complement(1038843..1040345) Variovorax paradoxus S110 7975622 YP_002948130.1 CDS Vapar_6301 NC_012792.1 1040342 1041574 R KEGG: bvi:Bcep1808_7174 outer membrane efflux protein; outer membrane efflux protein complement(1040342..1041574) Variovorax paradoxus S110 7975623 YP_002948131.1 CDS Vapar_6302 NC_012792.1 1041651 1042040 R KEGG: rpi:Rpic_1803 hypothetical protein; hypothetical protein complement(1041651..1042040) Variovorax paradoxus S110 7975624 YP_002948132.1 CDS Vapar_6303 NC_012792.1 1042275 1043408 D PFAM: glucose sorbosone dehydrogenase; KEGG: eba:ebA6077 glucose/sorbosone dehydrogenase; glucose sorbosone dehydrogenase 1042275..1043408 Variovorax paradoxus S110 7975625 YP_002948133.1 CDS Vapar_6304 NC_012792.1 1043562 1043849 D KEGG: mms:mma_0924 hypothetical protein; hypothetical protein 1043562..1043849 Variovorax paradoxus S110 7975626 YP_002948134.1 CDS Vapar_6305 NC_012792.1 1043872 1044714 D PFAM: protein of unknown function DUF692; KEGG: rme:Rmet_4684 hypothetical protein; hypothetical protein 1043872..1044714 Variovorax paradoxus S110 7975627 YP_002948135.1 CDS Vapar_6306 NC_012792.1 1044711 1045499 D KEGG: rme:Rmet_4683 hypothetical protein; hypothetical protein 1044711..1045499 Variovorax paradoxus S110 7975628 YP_002948136.1 CDS Vapar_6307 NC_012792.1 1045496 1045981 D PFAM: DoxX family protein; KEGG: mms:mma_0927 hypothetical protein; DoxX family protein 1045496..1045981 Variovorax paradoxus S110 7975629 YP_002948137.1 CDS Vapar_6308 NC_012792.1 1046051 1046857 D PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bxe:Bxe_A2728 LuxR family transcriptional regulator; transcriptional regulator, LuxR family 1046051..1046857 Variovorax paradoxus S110 7975630 YP_002948138.1 CDS Vapar_6309 NC_012792.1 1046945 1047970 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B4340 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain protein 1046945..1047970 Variovorax paradoxus S110 7975631 YP_002948139.1 CDS Vapar_6310 NC_012792.1 1048010 1048987 D PFAM: conserved hypothetical protein; KEGG: cti:RALTA_A0207 conserved hypothetical protein, UPF0065; hypothetical protein 1048010..1048987 Variovorax paradoxus S110 7975632 YP_002948140.1 CDS Vapar_6311 NC_012792.1 1049169 1050410 D PFAM: major facilitator superfamily MFS_1; KEGG: ara:Arad_7434 hypothetical protein; major facilitator superfamily MFS_1 1049169..1050410 Variovorax paradoxus S110 7975633 YP_002948141.1 CDS Vapar_6312 NC_012792.1 1050504 1050824 D TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: neu:NE1356 hypothetical protein; addiction module killer protein 1050504..1050824 Variovorax paradoxus S110 7975634 YP_002948142.1 CDS Vapar_6313 NC_012792.1 1050796 1051089 D TIGRFAM: addiction module antidote protein; KEGG: dac:Daci_1686 putative transcriptional regulator; addiction module antidote protein 1050796..1051089 Variovorax paradoxus S110 7975635 YP_002948143.1 CDS Vapar_6314 NC_012792.1 1051225 1051986 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: mlo:mll2271 3-oxoacyl-(acyl-carrier protein) reductase; short-chain dehydrogenase/reductase SDR 1051225..1051986 Variovorax paradoxus S110 7975636 YP_002948144.1 CDS Vapar_6315 NC_012792.1 1051983 1052900 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bra:BRADO4334 putative RNA polymerase sigma subunit; RNA polymerase, sigma-24 subunit, ECF subfamily 1051983..1052900 Variovorax paradoxus S110 7975637 YP_002948145.1 CDS Vapar_6316 NC_012792.1 1052860 1053456 R KEGG: pol:Bpro_0084 hypothetical protein; hypothetical protein complement(1052860..1053456) Variovorax paradoxus S110 7975638 YP_002948146.1 CDS Vapar_6317 NC_012792.1 1053485 1054282 R PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: pol:Bpro_0083 protein of unknown function DUF899, thioredoxin-like; hypothetical protein complement(1053485..1054282) Variovorax paradoxus S110 7975639 YP_002948147.1 CDS Vapar_6318 NC_012792.1 1054405 1055088 R KEGG: pol:Bpro_0082 hypothetical protein; hypothetical protein complement(1054405..1055088) Variovorax paradoxus S110 7975640 YP_002948148.1 CDS Vapar_6319 NC_012792.1 1055138 1056358 R PFAM: Tetratricopeptide TPR_4; KEGG: pol:Bpro_0081 tetratricopeptide TPR_4; hypothetical protein complement(1055138..1056358) Variovorax paradoxus S110 7975641 YP_002948149.1 CDS Vapar_6320 NC_012792.1 1056794 1057267 D PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: lch:Lcho_4306 2Fe-2S iron-sulfur cluster binding domain-containing protein; (2Fe-2S)-binding domain protein 1056794..1057267 Variovorax paradoxus S110 7975642 YP_002948150.1 CDS Vapar_6321 NC_012792.1 1057281 1059551 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: lch:Lcho_4305 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding 1057281..1059551 Variovorax paradoxus S110 7975643 YP_002948151.1 CDS Vapar_6323 NC_012792.1 1060080 1061657 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator complement(1060080..1061657) Variovorax paradoxus S110 7975645 YP_002948152.1 CDS Vapar_6324 NC_012792.1 1061796 1062980 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; globin; KEGG: pap:PSPA7_2535 nitric oxide dioxygenase; oxidoreductase FAD/NAD(P)-binding domain protein 1061796..1062980 Variovorax paradoxus S110 7975646 YP_002948153.1 CDS Vapar_6325 NC_012792.1 1063056 1063340 D KEGG: pna:Pnap_0075 hypothetical protein; hypothetical protein 1063056..1063340 Variovorax paradoxus S110 7975647 YP_002948154.1 CDS Vapar_6326 NC_012792.1 1063494 1063865 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dac:Daci_1810 response regulator receiver protein; response regulator receiver protein 1063494..1063865 Variovorax paradoxus S110 7975648 YP_002948155.1 CDS Vapar_6327 NC_012792.1 1063888 1065129 D PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_0025 cardiolipin synthase 2; cardiolipin synthase 2 1063888..1065129 Variovorax paradoxus S110 7975649 YP_002948156.1 CDS Vapar_6328 NC_012792.1 1065139 1066521 R PFAM: Aldehyde Dehydrogenase; KEGG: pca:Pcar_1074 putative aldehyde dehydrogenase; Aldehyde Dehydrogenase complement(1065139..1066521) Variovorax paradoxus S110 7975650 YP_002948157.1 CDS Vapar_6329 NC_012792.1 1066536 1067042 R KEGG: aba:Acid345_2557 hypothetical protein; hypothetical protein complement(1066536..1067042) Variovorax paradoxus S110 7975651 YP_002948158.1 CDS Vapar_6330 NC_012792.1 1067274 1067693 D PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: mms:mma_1652 inosine-5'-monophosphate dehydrogenase; CBS domain containing protein 1067274..1067693 Variovorax paradoxus S110 7975652 YP_002948159.1 CDS Vapar_6331 NC_012792.1 1068010 1068567 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pzu:PHZ_c2654 putative intracellular protease/amidase; intracellular protease, PfpI family 1068010..1068567 Variovorax paradoxus S110 7975653 YP_002948160.1 CDS Vapar_6332 NC_012792.1 1068574 1069068 R KEGG: bpt:Bpet1843 hypothetical protein; hypothetical protein complement(1068574..1069068) Variovorax paradoxus S110 7975654 YP_002948161.1 CDS Vapar_6333 NC_012792.1 1069426 1069626 D hypothetical protein 1069426..1069626 Variovorax paradoxus S110 7975655 YP_002948162.1 CDS Vapar_6334 NC_012792.1 1069642 1070094 D KEGG: pla:Plav_0761 putative transmembrane protein; putative transmembrane protein 1069642..1070094 Variovorax paradoxus S110 7975656 YP_002948163.1 CDS Vapar_6335 NC_012792.1 1070060 1071430 R PFAM: Chloride channel core; KEGG: aav:Aave_4712 Cl-channel, voltage-gated family protein; Chloride channel core complement(1070060..1071430) Variovorax paradoxus S110 7975657 YP_002948164.1 CDS Vapar_6336 NC_012792.1 1071466 1072011 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: jan:Jann_0508 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(1071466..1072011) Variovorax paradoxus S110 7975658 YP_002948165.1 CDS Vapar_6337 NC_012792.1 1072095 1072874 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: spe:Spro_4732 AraC family transcriptional regulator; AraC family transcriptional regulator 1072095..1072874 Variovorax paradoxus S110 7975659 YP_002948166.1 CDS Vapar_6338 NC_012792.1 1072903 1073922 R PFAM: alpha/beta hydrolase fold; KEGG: sus:Acid_5294 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1072903..1073922) Variovorax paradoxus S110 7975660 YP_002948167.1 CDS Vapar_6339 NC_012792.1 1074060 1074797 D KEGG: rme:Rmet_1561 hypothetical protein; hypothetical protein 1074060..1074797 Variovorax paradoxus S110 7975661 YP_002948168.1 CDS Vapar_6340 NC_012792.1 1074794 1074991 D KEGG: rme:Rmet_1562 hypothetical protein; hypothetical protein 1074794..1074991 Variovorax paradoxus S110 7975662 YP_002948169.1 CDS Vapar_6341 NC_012792.1 1075190 1076416 D PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: eba:ebA6749 transposase; transposase IS116/IS110/IS902 family protein 1075190..1076416 Variovorax paradoxus S110 7975663 YP_002948170.1 CDS Vapar_6342 NC_012792.1 1076690 1077916 D PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: eba:ebA6749 transposase; transposase IS116/IS110/IS902 family protein 1076690..1077916 Variovorax paradoxus S110 7975664 YP_002948171.1 CDS Vapar_6344 NC_012792.1 1078753 1079685 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpt:Bpet1256 LysR family transcriptional regulator; LysR family transcriptional regulator 1078753..1079685 Variovorax paradoxus S110 7975666 YP_002948172.1 CDS Vapar_6345 NC_012792.1 1079717 1080709 R PFAM: conserved hypothetical protein; KEGG: bpt:Bpet1255 putative secreted protein; hypothetical protein complement(1079717..1080709) Variovorax paradoxus S110 7975667 YP_002948173.1 CDS Vapar_6346 NC_012792.1 1080760 1082598 R PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: bpt:Bpet1254 hypothetical protein; peptidase S15 complement(1080760..1082598) Variovorax paradoxus S110 7975668 YP_002948174.1 CDS Vapar_6347 NC_012792.1 1083065 1084099 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_3230 putative transcriptional regulator; AraC family transcriptional regulator 1083065..1084099 Variovorax paradoxus S110 7975669 YP_002948175.1 CDS Vapar_6348 NC_012792.1 1084497 1085066 D KEGG: CG13560; hypothetical protein 1084497..1085066 Variovorax paradoxus S110 7975670 YP_002948176.1 CDS Vapar_6349 NC_012792.1 1085078 1086481 D KEGG: pla:Plav_2651 HfaB protein; Putative protein involved in formation of curli polymers-like protein 1085078..1086481 Variovorax paradoxus S110 7975671 YP_002948177.1 CDS Vapar_6350 NC_012792.1 1086569 1091269 D KEGG: Muc19; mucin 19; hypothetical protein 1086569..1091269 Variovorax paradoxus S110 7975672 YP_002948178.1 CDS Vapar_6351 NC_012792.1 1091669 1103026 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: filamentous haemagglutinin domain protein; Haemagluttinin repeat-containing protein; KEGG: rso:RS02477 hemagglutinin-related protein; filamentous hemagglutinin family outer membrane protein 1091669..1103026 Variovorax paradoxus S110 7975673 YP_002948179.1 CDS Vapar_6352 NC_012792.1 1103317 1103688 D hypothetical protein 1103317..1103688 Variovorax paradoxus S110 7975674 YP_002948180.1 CDS Vapar_6354 NC_012792.1 1104329 1104526 D hypothetical protein 1104329..1104526 Variovorax paradoxus S110 7975676 YP_002948181.1 CDS Vapar_6355 NC_012792.1 1104710 1104832 D hypothetical protein 1104710..1104832 Variovorax paradoxus S110 7975677 YP_002948182.1 CDS Vapar_6356 NC_012792.1 1105376 1107067 D PFAM: Polypeptide-transport-associated domain protein ShlB-type; Hemolysin activator HlyB domain protein; KEGG: rso:RS02577 activation/secretion protein; Polypeptide-transport-associated domain protein ShlB-type 1105376..1107067 Variovorax paradoxus S110 7975678 YP_002948183.1 CDS Vapar_6357 NC_012792.1 1107143 1107814 D KEGG: mmr:Mmar10_0022 hypothetical protein; hypothetical protein 1107143..1107814 Variovorax paradoxus S110 7975679 YP_002948184.1 CDS Vapar_6358 NC_012792.1 1107858 1108418 D hypothetical protein 1107858..1108418 Variovorax paradoxus S110 7975680 YP_002948185.1 CDS Vapar_6359 NC_012792.1 1108441 1109112 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: rso:RS05389 hypothetical protein; hypothetical protein complement(1108441..1109112) Variovorax paradoxus S110 7975681 YP_002948186.1 CDS Vapar_6360 NC_012792.1 1109147 1110355 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1109147..1110355) Variovorax paradoxus S110 7975682 YP_002948187.1 CDS Vapar_6361 NC_012792.1 1110485 1111456 D Transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation; nitrogen assimilation transcriptional regulator 1110485..1111456 Variovorax paradoxus S110 7975683 YP_002948188.1 CDS Vapar_6362 NC_012792.1 1111606 1112046 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rso:RSp0941 putative biotin carboxyl carrier protein of acetyl-CoA carboxylase (BccP); acetyl-CoA carboxylase, biotin carboxyl carrier protein 1111606..1112046 Variovorax paradoxus S110 7975684 YP_002948189.1 CDS Vapar_6363 NC_012792.1 1112060 1113412 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 1112060..1113412 Variovorax paradoxus S110 7975685 YP_002948190.1 CDS Vapar_6364 NC_012792.1 1113409 1114077 D PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: rso:RS05394 hypothetical protein; Allophanate hydrolase subunit 1 1113409..1114077 Variovorax paradoxus S110 7975686 YP_002948191.1 CDS Vapar_6365 NC_012792.1 1114074 1115078 D KEGG: rso:RS05395 hypothetical protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2; urea amidolyase related protein 1114074..1115078 Variovorax paradoxus S110 7975687 YP_002948192.1 CDS Vapar_6366 NC_012792.1 1115418 1115813 D PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rso:RS05396 putative biotin carboxyl carrier protein of acetyl-CoA carboxylase; biotin/lipoyl attachment domain-containing protein 1115418..1115813 Variovorax paradoxus S110 7975688 YP_002948193.1 CDS Vapar_6367 NC_012792.1 1115839 1116603 D PFAM: LamB/YcsF family protein; KEGG: rso:RS05397 hypothetical protein; hypothetical protein 1115839..1116603 Variovorax paradoxus S110 7975689 YP_002948194.1 CDS Vapar_6368 NC_012792.1 1116770 1117522 D PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rso:RS05398 oxidoreductase protein; short-chain dehydrogenase/reductase SDR 1116770..1117522 Variovorax paradoxus S110 7975690 YP_002948195.1 CDS Vapar_6369 NC_012792.1 1117555 1118256 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_4548 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter, inner membrane subunit 1117555..1118256 Variovorax paradoxus S110 7975691 YP_002948196.1 CDS Vapar_6370 NC_012792.1 1118263 1119021 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RS05400 amino acid ABC transporter transmembrane protein; polar amino acid ABC transporter, inner membrane subunit 1118263..1119021 Variovorax paradoxus S110 7975692 YP_002948197.1 CDS Vapar_6371 NC_012792.1 1119067 1119837 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RS05401 amino-acid ATP-binding ABC transporter protein; ABC transporter 1119067..1119837 Variovorax paradoxus S110 7975693 YP_002948198.1 CDS Vapar_6372 NC_012792.1 1119881 1120723 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rso:RS05402 amino-acid-binding periplasmic ABC transporter protein; extracellular solute-binding protein family 3 1119881..1120723 Variovorax paradoxus S110 7975694 YP_002948199.1 CDS Vapar_6373 NC_012792.1 1120824 1121030 D hypothetical protein 1120824..1121030 Variovorax paradoxus S110 7975695 YP_002948200.1 CDS Vapar_6374 NC_012792.1 1121173 1121448 D hypothetical protein 1121173..1121448 Variovorax paradoxus S110 7975696 YP_002948201.1 CDS Vapar_6375 NC_012792.1 1121460 1123247 R PFAM: Chloride channel core; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: rpi:Rpic_2699 chloride channel core; Chloride channel core complement(1121460..1123247) Variovorax paradoxus S110 7975697 YP_002948202.1 CDS Vapar_6376 NC_012792.1 1123326 1123742 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: reu:Reut_B5574 MarR family transcriptional regulator; transcriptional regulator, MarR family complement(1123326..1123742) Variovorax paradoxus S110 7974857 YP_002948203.1 CDS Vapar_6377 NC_012792.1 1123991 1124479 D PFAM: protein of unknown function DUF1468; KEGG: aav:Aave_1069 hypothetical protein; hypothetical protein 1123991..1124479 Variovorax paradoxus S110 7975700 YP_002948204.1 CDS Vapar_6378 NC_012792.1 1124496 1126016 D PFAM: protein of unknown function DUF112 transmembrane; KEGG: vei:Veis_4018 hypothetical protein; hypothetical protein 1124496..1126016 Variovorax paradoxus S110 7975701 YP_002948205.1 CDS Vapar_6379 NC_012792.1 1126041 1126874 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: bcj:BCAM2815 putative 2-nitropropane dioxygenase; 2-nitropropane dioxygenase NPD 1126041..1126874 Variovorax paradoxus S110 7975702 YP_002948206.1 CDS Vapar_6380 NC_012792.1 1126920 1127645 D member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1126920..1127645 Variovorax paradoxus S110 7975703 YP_002948207.1 CDS Vapar_6381 NC_012792.1 1127681 1128250 D KEGG: bbr:BB1838 hypothetical protein; hypothetical protein 1127681..1128250 Variovorax paradoxus S110 7975704 YP_002948208.1 CDS Vapar_6382 NC_012792.1 1128247 1128642 D PFAM: cytochrome c class I; KEGG: bbr:BB1839 putative cytochrome c; cytochrome c class I 1128247..1128642 Variovorax paradoxus S110 7975705 Vapar_R0001 tRNA Vapar_R0001 NC_012791.1 99232 99307 D tRNA-Gly 99232..99307 Variovorax paradoxus S110 7971635 Vapar_R0002 tRNA Vapar_R0002 NC_012791.1 635353 635438 D tRNA-Tyr 635353..635438 Variovorax paradoxus S110 7973561 Vapar_R0003 tRNA Vapar_R0003 NC_012791.1 635504 635577 D tRNA-Gly 635504..635577 Variovorax paradoxus S110 7973562 Vapar_R0004 tRNA Vapar_R0004 NC_012791.1 635619 635693 D tRNA-Thr 635619..635693 Variovorax paradoxus S110 7973563 Vapar_R0005 tRNA Vapar_R0005 NC_012791.1 636981 637056 D tRNA-Trp 636981..637056 Variovorax paradoxus S110 7973565 Vapar_R0006 tRNA Vapar_R0006 NC_012791.1 655266 655341 D tRNA-Phe 655266..655341 Variovorax paradoxus S110 7973579 Vapar_R0008 tRNA Vapar_R0008 NC_012791.1 1317852 1317927 D tRNA-Thr 1317852..1317927 Variovorax paradoxus S110 7973374 Vapar_R0009 tRNA Vapar_R0009 NC_012791.1 1411782 1411866 R tRNA-Leu complement(1411782..1411866) Variovorax paradoxus S110 7973220 Vapar_R0010 tRNA Vapar_R0010 NC_012791.1 1636912 1636987 R tRNA-Lys complement(1636912..1636987) Variovorax paradoxus S110 7973113 Vapar_R0011 tRNA Vapar_R0011 NC_012791.1 1651883 1651958 R tRNA-Ala complement(1651883..1651958) Variovorax paradoxus S110 7973132 Vapar_R0013 tRNA Vapar_R0013 NC_012791.1 1927074 1927149 D tRNA-Val 1927074..1927149 Variovorax paradoxus S110 7970805 Vapar_R0014 tRNA Vapar_R0014 NC_012791.1 1931472 1931547 D tRNA-His 1931472..1931547 Variovorax paradoxus S110 7970811 Vapar_R0015 tRNA Vapar_R0015 NC_012791.1 2010292 2010368 D tRNA-Pro 2010292..2010368 Variovorax paradoxus S110 7971056 Vapar_R0016 tRNA Vapar_R0016 NC_012791.1 2293751 2293825 D tRNA-Val 2293751..2293825 Variovorax paradoxus S110 7973835 Vapar_R0017 tRNA Vapar_R0017 NC_012791.1 2460151 2460227 R tRNA-Arg complement(2460151..2460227) Variovorax paradoxus S110 7971157 Vapar_R0018 tRNA Vapar_R0018 NC_012791.1 2460674 2460750 R tRNA-Pro complement(2460674..2460750) Variovorax paradoxus S110 7971159 Vapar_R0020 tRNA Vapar_R0020 NC_012791.1 2554587 2554662 R tRNA-Asn complement(2554587..2554662) Variovorax paradoxus S110 7970437 Vapar_R0021 tRNA Vapar_R0021 NC_012791.1 2611729 2611804 D tRNA-Trp 2611729..2611804 Variovorax paradoxus S110 7969534 Vapar_R0022 tRNA Vapar_R0022 NC_012791.1 2647552 2647638 D tRNA-Leu 2647552..2647638 Variovorax paradoxus S110 7969575 Vapar_R0023 tRNA Vapar_R0023 NC_012791.1 2653705 2653780 D tRNA-Gly 2653705..2653780 Variovorax paradoxus S110 7969988 Vapar_R0024 tRNA Vapar_R0024 NC_012791.1 2653845 2653918 D tRNA-Cys 2653845..2653918 Variovorax paradoxus S110 7969989 Vapar_R0025 tRNA Vapar_R0025 NC_012791.1 2654032 2654123 D tRNA-Leu 2654032..2654123 Variovorax paradoxus S110 7969990 Vapar_R0026 tRNA Vapar_R0026 NC_012791.1 2731268 2731344 D tRNA-Val 2731268..2731344 Variovorax paradoxus S110 7970065 Vapar_R0027 tRNA Vapar_R0027 NC_012791.1 2735942 2736026 R tRNA-Leu complement(2735942..2736026) Variovorax paradoxus S110 7972355 Vapar_R0028 tRNA Vapar_R0028 NC_012791.1 2839014 2839089 D tRNA-Lys 2839014..2839089 Variovorax paradoxus S110 7972295 Vapar_R0029 tRNA Vapar_R0029 NC_012791.1 2882622 2882712 R tRNA-Ser complement(2882622..2882712) Variovorax paradoxus S110 7972336 Vapar_R0030 tRNA Vapar_R0030 NC_012791.1 3242520 3242612 R tRNA-Ser complement(3242520..3242612) Variovorax paradoxus S110 7974295 Vapar_R0031 tRNA Vapar_R0031 NC_012791.1 3344773 3344846 D tRNA-Gly 3344773..3344846 Variovorax paradoxus S110 7973414 Vapar_R0032 tRNA Vapar_R0032 NC_012791.1 3701255 3701339 R tRNA-Leu complement(3701255..3701339) Variovorax paradoxus S110 7972136 Vapar_R0033 tRNA Vapar_R0033 NC_012791.1 3974756 3974832 R tRNA-Asp complement(3974756..3974832) Variovorax paradoxus S110 7970914 Vapar_R0034 tRNA Vapar_R0034 NC_012791.1 3974902 3974977 R tRNA-Glu complement(3974902..3974977) Variovorax paradoxus S110 7970915 Vapar_R0035 tRNA Vapar_R0035 NC_012791.1 3975029 3975104 R tRNA-Ala complement(3975029..3975104) Variovorax paradoxus S110 7970916 Vapar_R0036 tRNA Vapar_R0036 NC_012791.1 4013082 4013157 D tRNA-Thr 4013082..4013157 Variovorax paradoxus S110 7970956 Vapar_R0037 tRNA Vapar_R0037 NC_012791.1 4272428 4272517 R tRNA-Ser complement(4272428..4272517) Variovorax paradoxus S110 7974593 Vapar_R0038 tRNA Vapar_R0038 NC_012791.1 4459782 4459858 D tRNA-Pro 4459782..4459858 Variovorax paradoxus S110 7971303 Vapar_R0039 tRNA Vapar_R0039 NC_012791.1 4568238 4568325 R tRNA-Ser complement(4568238..4568325) Variovorax paradoxus S110 7970510 Vapar_R0040 tRNA Vapar_R0040 NC_012791.1 4579750 4579826 R tRNA-Arg complement(4579750..4579826) Variovorax paradoxus S110 7970523 Vapar_R0041 tRNA Vapar_R0041 NC_012791.1 4579891 4579967 R tRNA-Met complement(4579891..4579967) Variovorax paradoxus S110 7970524 Vapar_R0042 tRNA Vapar_R0042 NC_012791.1 4591860 4591936 D tRNA-Gln 4591860..4591936 Variovorax paradoxus S110 7970535 Vapar_R0043 tRNA Vapar_R0043 NC_012791.1 4743371 4743445 D tRNA-Arg 4743371..4743445 Variovorax paradoxus S110 7972783 Vapar_R0044 tRNA Vapar_R0044 NC_012791.1 4939819 4939895 D tRNA-Met 4939819..4939895 Variovorax paradoxus S110 7972859 Vapar_R0047 tRNA Vapar_R0047 NC_012791.1 5072903 5072978 R tRNA-Ala complement(5072903..5072978) Variovorax paradoxus S110 7970233 Vapar_R0048 tRNA Vapar_R0048 NC_012791.1 5073008 5073084 R tRNA-Ile complement(5073008..5073084) Variovorax paradoxus S110 7970234 Vapar_R0052 tRNA Vapar_R0052 NC_012791.1 5078676 5078751 R tRNA-Ala complement(5078676..5078751) Variovorax paradoxus S110 7970238 Vapar_R0053 tRNA Vapar_R0053 NC_012791.1 5078781 5078857 R tRNA-Ile complement(5078781..5078857) Variovorax paradoxus S110 7970239 Vapar_R0055 tRNA Vapar_R0055 NC_012791.1 5147777 5147851 R tRNA-Arg complement(5147777..5147851) Variovorax paradoxus S110 7970300 Vapar_R0056 tRNA Vapar_R0056 NC_012791.1 5365817 5365893 R tRNA-Met complement(5365817..5365893) Variovorax paradoxus S110 7974162 Vapar_R0071 tRNA Vapar_R0071 NC_012792.1 891029 891104 R tRNA-Lys complement(891029..891104) Variovorax paradoxus S110 7975041 Vapar_R0057 tRNA Vapar_R0057 NC_012792.1 891148 891221 R tRNA-His complement(891148..891221) Variovorax paradoxus S110 7975706 Vapar_R0058 tRNA Vapar_R0058 NC_012792.1 891230 891304 R tRNA-Ile complement(891230..891304) Variovorax paradoxus S110 7975042 Vapar_R0059 tRNA Vapar_R0059 NC_012792.1 891314 891390 R tRNA-Asn complement(891314..891390) Variovorax paradoxus S110 7975043 Vapar_R0060 tRNA Vapar_R0060 NC_012792.1 891421 891498 R tRNA-Arg complement(891421..891498) Variovorax paradoxus S110 7975044 Vapar_R0061 tRNA Vapar_R0061 NC_012792.1 891560 891635 R tRNA-Asp complement(891560..891635) Variovorax paradoxus S110 7975045 Vapar_R0062 tRNA Vapar_R0062 NC_012792.1 891656 891744 R tRNA-Ser complement(891656..891744) Variovorax paradoxus S110 7975046 Vapar_R0063 tRNA Vapar_R0063 NC_012792.1 891838 891914 R tRNA-Pro complement(891838..891914) Variovorax paradoxus S110 7975047 Vapar_R0064 tRNA Vapar_R0064 NC_012792.1 891936 892013 R tRNA-Gln complement(891936..892013) Variovorax paradoxus S110 7975048 Vapar_R0065 tRNA Vapar_R0065 NC_012792.1 892052 892130 R tRNA-Met complement(892052..892130) Variovorax paradoxus S110 7975049 Vapar_R0066 tRNA Vapar_R0066 NC_012792.1 892157 892233 R tRNA-Glu complement(892157..892233) Variovorax paradoxus S110 7975050 Vapar_R0067 tRNA Vapar_R0067 NC_012792.1 892247 892323 R tRNA-Thr complement(892247..892323) Variovorax paradoxus S110 7975051 Vapar_R0068 tRNA Vapar_R0068 NC_012792.1 892349 892424 R tRNA-Trp complement(892349..892424) Variovorax paradoxus S110 7975052 Vapar_R0069 tRNA Vapar_R0069 NC_012792.1 892435 892519 R tRNA-Leu complement(892435..892519) Variovorax paradoxus S110 7975053 Vapar_R0070 tRNA Vapar_R0070 NC_012792.1 892669 892745 R tRNA-Gly complement(892669..892745) Variovorax paradoxus S110 7975054 Vapar_R0045 rRNA Vapar_R0045 NC_012791.1 5069467 5069578 R 5S ribosomal RNA complement(5069467..5069578) Variovorax paradoxus S110 7970231 Vapar_R0046 rRNA Vapar_R0046 NC_012791.1 5069709 5072579 R 23S ribosomal RNA complement(5069709..5072579) Variovorax paradoxus S110 7970232 Vapar_R0049 rRNA Vapar_R0049 NC_012791.1 5073169 5074691 R 16S ribosomal RNA complement(5073169..5074691) Variovorax paradoxus S110 7970235 Vapar_R0050 rRNA Vapar_R0050 NC_012791.1 5075240 5075351 R 5S ribosomal RNA complement(5075240..5075351) Variovorax paradoxus S110 7970236 Vapar_R0051 rRNA Vapar_R0051 NC_012791.1 5075482 5078352 R 23S ribosomal RNA complement(5075482..5078352) Variovorax paradoxus S110 7970237 Vapar_R0054 rRNA Vapar_R0054 NC_012791.1 5078942 5080464 R 16S ribosomal RNA complement(5078942..5080464) Variovorax paradoxus S110 7970240