-- dump date   	20111121_015545
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_980113.1	PFAM: Zeta toxin family protein; KEGG: bch:Bcen2424_6819 zeta toxin family protein
YP_980114.1	PFAM: Relaxase/mobilization nuclease family protein; KEGG: bbr:BB0493 plasmid-related protein
YP_980115.1	KEGG: xfa:XFa0017 hypothetical protein
YP_980116.1	PFAM: TRAG family protein; SMART: phospholipase D/Transphosphatidylase; KEGG: xcb:XC_2413 putative NTPase VagA
YP_980117.1	PFAM: type II secretion system protein E; KEGG: psp:PSPPH_B0036 conjugal transfer protein
YP_980118.1	PFAM: conjugation TrbI family protein; KEGG: xfa:XFa0014 conjugal transfer protein
YP_980119.1	PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: xfa:XFa0013 conjugal transfer protein
YP_980120.1	PFAM: VirB8 family protein; KEGG: bbr:BB4899 putative bacterial secretion system protein
YP_980121.1	PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: xfa:XFa0011 conjugal transfer protein
YP_980122.1	PFAM: type IV secretion system family protein; KEGG: bbr:BB0491 plasmid-related exported protein
YP_980123.1	PFAM: CagE, TrbE, VirB component of type IV transporter system; KEGG: bxe:Bxe_A1756 putative type IV secretion system protein VirB4/TraE
YP_980124.1	PFAM: type IV secretory pathway, VirB3 family protein
YP_980129.1	KEGG: stm:STM4529 putative cytoplasmic protein
YP_980130.1	PFAM: protein of unknown function DUF497; KEGG: stm:STM4528 putative inner membrane protein
YP_980131.1	PFAM: plasmid recombination enzyme; KEGG: spj:MGAS2096_Spy1143 plasmid recombination protein, Mob family
YP_980132.1	KEGG: lpp:plpp0059 hypothetical protein
YP_980133.1	KEGG: xfa:XFa0018 hypothetical protein
YP_980134.1	PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: lpn:lpg2573 transposase (resolvase, DNA invertase)
YP_980135.1	KEGG: tbd:Tbd_0930 hypothetical protein
YP_980136.1	KEGG: bam:Bamb_6604 hypothetical protein
YP_980137.1	KEGG: xcv:XCVc0027 putative secreted protein
YP_980139.1	KEGG: ilo:IL2528 DNA cytosine methylase
YP_980141.1	KEGG: nmu:Nmul_D2819 MobA/MobL protein
YP_980143.1	PFAM: protein of unknown function DUF497; KEGG: xfa:XF0533 hypothetical protein
YP_980144.1	KEGG: xfa:XF0532 hypothetical protein
YP_980145.1	KEGG: tbd:Tbd_0930 hypothetical protein
YP_980147.1	KEGG: rme:Rmet_6188 transposase Tn3
YP_980149.1	KEGG: net:Neut_2577 transfer origin protein, TraL
YP_980151.1	PFAM: mobilisation protein; KEGG: xfa:XFa0048 hypothetical protein
YP_994812.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_994813.1	KEGG: rfr:Rfer_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain
YP_994814.1	KEGG: pol:Bpro_0003 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II
YP_994815.1	TIGRFAM: mobile mystery protein B; PFAM: filamentation induced by cAMP protein Fic; KEGG: gsu:GSU1391 Fic family protein
YP_994816.1	TIGRFAM: mobile mystery protein A; SMART: helix-turn-helix domain protein; KEGG: gsu:GSU1390 DNA-binding protein
YP_994817.1	PFAM: type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dde:Dde_2493 DEAD/DEAH box helicase-like
YP_994818.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_3400 transcriptional regulator, LysR family
YP_994819.1	KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20
YP_994820.1	PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_4167 protein of unknown function DUF894, DitE
YP_994821.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_994822.1	KEGG: rfr:Rfer_0822 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_994823.1	KEGG: rfr:Rfer_2901 putative inner membrane transmembrane protein
YP_994824.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_994825.1	KEGG: rfr:Rfer_0466 5-methyltetrahydrofolate--homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein
YP_994826.1	PFAM: regulatory protein, TetR; KEGG: rde:RD1_0515 transcriptional regulator, TetR family
YP_994827.1	PFAM: 3-dehydroquinate synthase; KEGG: pol:Bpro_0787 3-dehydroquinate synthase
YP_994828.1	KEGG: mtp:Mthe_1690 conserved repeat domain
YP_994829.1	TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: rfr:Rfer_2923 type II and III secretion system protein
YP_994830.1	PFAM: Pilus assembly protein, PilQ; KEGG: rfr:Rfer_2922 pilus assembly protein, PilQ
YP_994831.1	PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO
YP_994832.1	PFAM: Fimbrial assembly family protein; KEGG: rfr:Rfer_2920 fimbrial assembly
YP_994833.1	TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM
YP_994834.1	KEGG: rfr:Rfer_2918 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase
YP_994835.1	PFAM: Frataxin family protein; KEGG: rfr:Rfer_2917 frataxin-like
YP_994836.1	PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0111 FAD linked oxidase-like
YP_994837.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_994838.1	KEGG: lma:LmjF35.0520 proteophosphoglycan ppg4
YP_994839.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_994840.1	KEGG: pol:Bpro_0895 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase
YP_994841.1	KEGG: bxe:Bxe_B0724 hypothetical protein
YP_994842.1	PFAM: ATP-binding region, ATPase domain protein domain protein; CHASE3 domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_0880 multi-sensor signal transduction histidine kinase
YP_994843.1	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_0881 two component transcriptional regulator, LuxR family
YP_994844.1	PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like)
YP_994845.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rfr:Rfer_1307 UBA/ThiF-type NAD/FAD binding protein
YP_994846.1	KEGG: pol:Bpro_0885 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41
YP_994847.1	KEGG: pol:Bpro_0886 phosphoglycerate mutase 1 family; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase
YP_994848.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_994849.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3949 hypothetical protein
YP_994850.1	PFAM: Rhodanese domain protein; KEGG: rfr:Rfer_1310 rhodanese-like
YP_994851.1	TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: rfr:Rfer_1311 glutaredoxin, GrxC
YP_994852.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_994853.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_994854.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mlr2437 rhizopine catabolism protein MocC
YP_994855.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: mlo:mll2434 probable transcriptional regulator
YP_994856.1	KEGG: rxy:Rxyl_1721 periplasmic binding protein/LacI transcriptional regulator
YP_994857.1	PFAM: inner-membrane translocator; KEGG: mlo:mlr2441 permease protein of sugar ABC transporter
YP_994858.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_1719 ABC transporter related
YP_994859.1	PFAM: LmbE family protein; KEGG: rba:RB3342 hypothetical protein
YP_994860.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bsu:BG11855 unknown
YP_994861.1	PFAM: oxidoreductase domain protein; KEGG: mlo:mlr2436 NADH-dependent dyhydrogenase
YP_994862.1	KEGG: vfi:VF1170 hypothetical protein
YP_994863.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: bbr:BB4263 hypothetical protein
YP_994864.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rso:RSc1248 hypothetical protein
YP_994865.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_01166 ABC-type sugar transport system, periplasmic component
YP_994866.1	PFAM: inner-membrane translocator; KEGG: rso:RSc1243 probable sugar transmembrane ABC transporter protein
YP_994867.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rde:RD1_0217 myo-inositol dehydrogenase
YP_994868.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mlr7629 hypothetical protein
YP_994869.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rde:RD1_0486 sugar ABC transporter, ATP-binding protein, putative
YP_994870.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_CH02360 probable sugar ABC transporter, permease protein
YP_994871.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rde:RD1_0488 putative sugar ABC transporter, periplasmic sugar-binding protein
YP_994872.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bch:Bcen2424_1425 ABC transporter related
YP_994873.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB0238 hypothetical protein
YP_994874.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bur:Bcep18194_A4568 ABC sugar transporter, periplasmic ligand binding protein
YP_994875.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc1241 putative rhizopine-binding precursor signal peptide protein
YP_994876.1	PFAM: PfkB domain protein; KEGG: bch:Bcen2424_1423 PfkB domain protein
YP_994877.1	PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: bur:Bcep18194_A4566 acetolactate synthase
YP_994878.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_1301 xylose isomerase domain protein TIM barrel
YP_994879.1	PFAM: Myo-inositol catabolism IolB domain protein; KEGG: rso:RSc1237 putative myo-inositol catabolism protein
YP_994880.1	KEGG: nmu:Nmul_D2814 transcriptional regulator, XRE family
YP_994881.1	PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2017 squalene/phytoene synthase
YP_994882.1	PFAM: amine oxidase; KEGG: rfr:Rfer_1548 amine oxidase
YP_994883.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: rfr:Rfer_2299 HflC protein
YP_994884.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: rfr:Rfer_2300 HflK protein
YP_994885.1	PFAM: GTP-binding protein, HSR1-related; KEGG: rfr:Rfer_2301 small GTP-binding protein domain
YP_994886.1	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: rfr:Rfer_2302 host factor Hfq
YP_994887.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_994888.1	SMART: Pyrrolo-quinoline quinone; KEGG: rfr:Rfer_2304 pyrrolo-quinoline quinone
YP_994889.1	KEGG: rfr:Rfer_2305 hypothetical protein
YP_994890.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_994891.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_994892.1	KEGG: pol:Bpro_2609 hypothetical protein
YP_994893.1	KEGG: pol:Bpro_2610 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein
YP_994894.1	TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rfr:Rfer_2310 hypothetical protein
YP_994895.1	PFAM: nucleoside diphosphate kinase; KEGG: reh:H16_A2368 nucleoside diphosphate kinase
YP_994896.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rfr:Rfer_2312 pseudouridine synthase, Rsu
YP_994897.1	TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rfr:Rfer_2313 putative transcriptional regulator
YP_994898.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rfr:Rfer_2314 pseudouridine synthase, RluD
YP_994899.1	PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: pol:Bpro_3059 peptidase M23B
YP_994900.1	KEGG: pol:Bpro_3060 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_994901.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_994902.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_2783 alcohol dehydrogenase, zinc-binding
YP_994903.1	KEGG: rfr:Rfer_1326 alkaline phosphatase
YP_994904.1	KEGG: rfr:Rfer_2203 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein
YP_994905.1	TIGRFAM: DNA binding domain, excisionase family; KEGG: noc:Noc_0665 excisionase/Xis, DNA-binding
YP_994906.1	KEGG: mca:MCA2686 hypothetical protein
YP_994907.1	KEGG: mca:MCA2685 hypothetical protein
YP_994908.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: she:Shewmr4_2522 AAA ATPase, central domain protein
YP_994909.1	KEGG: she:Shewmr4_2521 hypothetical protein
YP_994910.1	KEGG: mca:MCA2684 hypothetical protein
YP_994911.1	KEGG: mca:MCA2683 hypothetical protein
YP_994912.1	PFAM: AAA-4 family protein; KEGG: fnu:FN0830 hypothetical protein
YP_994913.1	PFAM: SNF2-related protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: mca:MCA2682 prophage LambdaMc01, helicase, SNF2 family
YP_994914.1	KEGG: bam:Bamb_3644 hypothetical protein
YP_994915.1	KEGG: mca:MCA2682 prophage LambdaMc01, helicase, SNF2 family
YP_994916.1	PFAM: transposase, IS4 family protein; KEGG: xom:XOO_1836 ISXoo5 transposase
YP_994917.1	PFAM: helicase domain protein; KEGG: mca:MCA2682 prophage LambdaMc01, helicase, SNF2 family
YP_994918.1	PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_4702 aldehyde dehydrogenase
YP_994919.1	PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: pol:Bpro_4701 peptidase C26
YP_994920.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_4700 iron-containing alcohol dehydrogenase
YP_994921.1	PFAM: glutamine synthetase, catalytic region; KEGG: pol:Bpro_4698 glutamine synthetase, catalytic region
YP_994922.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: rme:Rmet_4644 carboxymuconolactone decarboxylase
YP_994923.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bxe:Bxe_B1961 ABC peptide transporter, periplasmic ligand binding protein
YP_994924.1	KEGG: rha:RHA1_ro09044 ABC peptide transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_994925.1	KEGG: rha:RHA1_ro09045 ABC peptide transporter, ATP-binding component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_994926.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09046 ABC peptide transporter, permease component
YP_994927.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09047 ABC peptide transporter, permease component
YP_994928.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rme:Rmet_4948 short-chain dehydrogenase/reductase SDR
YP_994930.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rme:Rmet_4950 transcriptional regulator, LacI family
YP_994931.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4073 uncharacterized protein UPF0065
YP_994932.1	KEGG: rme:Rmet_4949 AMP-dependent synthetase and ligase
YP_994933.1	PFAM: Excinuclease ABC, C subunit domain protein; KEGG: aba:Acid345_1092 hypothetical protein
YP_994934.1	KEGG: rle:pRL80099 hypothetical protein
YP_994935.1	KEGG: net:Neut_1256 ISRm2011-2 transposase protein
YP_994937.1	PFAM: protein of unknown function DUF1130; KEGG: jan:Jann_0586 hypothetical protein
YP_994938.1	PFAM: transposase, IS4 family protein; KEGG: eba:ebA5346 transposase (IS4), fragment
YP_994940.1	KEGG: pau:PA14_20520 hypothetical protein
YP_994944.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_1283 4Fe-4S ferredoxin, iron-sulfur binding
YP_994945.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3230 ABC transporter permease protein
YP_994946.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3231 ABC transporter permease protein
YP_994947.1	KEGG: bja:blr3232 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_994948.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: bja:blr3233 ABC transporter ATP-binding protein
YP_994949.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bja:blr3234 ABC transporter substrate-binding protein
YP_994950.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_994951.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB0768 hypothetical protein
YP_994952.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB0768 hypothetical protein
YP_994953.1	KEGG: bbr:BB0769 hypothetical protein
YP_994956.1	TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_4888 methionine biosynthesis MetW
YP_994957.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_994958.1	PFAM: protein of unknown function UPF0016; KEGG: pol:Bpro_4890 protein of unknown function UPF0016
YP_994959.1	PFAM: RNP-1 like RNA-binding protein; KEGG: rfr:Rfer_4234 RNA-binding region RNP-1
YP_994960.1	PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif)
YP_994961.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_4895 short-chain dehydrogenase/reductase SDR
YP_994962.1	PFAM: protein of unknown function DUF1239; KEGG: rfr:Rfer_4235 protein of unknown function DUF1239
YP_994963.1	TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pol:Bpro_4897 phosphatase KdsC
YP_994964.1	KEGG: pol:Bpro_4898 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS)
YP_994965.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_4900 potassium efflux system protein
YP_994966.1	KEGG: pol:Bpro_4257 thiol-disulfide interchange protein DsbD-like
YP_994967.1	KEGG: rfr:Rfer_1390 phosphoesterase, DHHA1
YP_994968.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: xcb:XC_3702 hypothetical protein
YP_994969.1	PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0288 extracellular ligand-binding receptor
YP_994970.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_3383 inner-membrane translocator
YP_994971.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0290 inner-membrane translocator
YP_994972.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0291 ABC transporter related
YP_994973.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0292 ABC transporter related
YP_994974.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4316 uncharacterized protein UPF0065
YP_994975.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4318 transcriptional regulator, LysR family
YP_994977.1	KEGG: rfr:Rfer_0340 putative ABC transporter, periplasmic molybdate binding protein
YP_994978.1	PFAM: amidohydrolase 2; KEGG: pol:Bpro_4320 amidohydrolase 2
YP_994979.1	PFAM: amidohydrolase 2; KEGG: rpe:RPE_0749 amidohydrolase 2
YP_994980.1	extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway
YP_994981.1	PFAM: oxidoreductase domain protein; KEGG: rpa:RPA4703 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase
YP_994982.1	PFAM: MscS Mechanosensitive ion channel; KEGG: ppu:PP_3360 hypothetical protein
YP_994983.1	PFAM: regulatory protein GntR, HTH; KEGG: mes:Meso_4561 transcriptional regulator, GntR family
YP_994984.1	KEGG: pol:Bpro_3685 betaine-aldehyde dehydrogenase
YP_994985.1	KEGG: bbr:BB0210 uracil-DNA glycosylase
YP_994987.1	KEGG: sru:SRU_1578 PIN domain protein, putative
YP_994988.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_1817 transcriptional regulator, LysR family
YP_994989.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1818 uncharacterized protein UPF0065
YP_994990.1	PFAM: regulatory protein GntR, HTH; KEGG: reu:Reut_B3951 regulatory protein GntR, HTH:GntR, C-terminal
YP_994991.1	PFAM: aldehyde dehydrogenase; KEGG: rme:Rmet_4430 aldehyde dehydrogenase
YP_994992.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rme:Rmet_1835 6-phosphogluconate dehydrogenase, NAD-binding
YP_994993.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B1820 probable extra-cytoplasmic solute receptor
YP_994994.1	PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1437 FAD dependent oxidoreductase
YP_994995.1	PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1438 ABC transporter related
YP_994996.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1439 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_994997.1	PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: pol:Bpro_1440 extracellular solute-binding protein, family 3
YP_994998.1	PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_1441 transcriptional regulator, XRE family
YP_994999.1	KEGG: bch:Bcen2424_3547 conserved hypothetical protein
YP_995001.1	KEGG: pol:Bpro_4826 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_995002.1	TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: pol:Bpro_4827 transketolase
YP_995003.1	KEGG: dar:Daro_0026 S-adenosylmethionine decarboxylase related
YP_995004.1	PFAM: Nucleotidyl transferase; KEGG: rfr:Rfer_0085 nucleotidyl transferase
YP_995005.1	PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: rfr:Rfer_0086 peptidase M24
YP_995006.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_995007.1	KEGG: pol:Bpro_4633 PAP2 (acid phosphatase) superfamily protein-like
YP_995008.1	KEGG: eba:ebA6579 hypothetical protein
YP_995009.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bja:blr7198 transcriptional regulatory protein
YP_995010.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bja:bll7197 ABC transporter substrate-binding protein
YP_995011.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bja:bll7196 ABC transporter ATP-binding protein
YP_995012.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll7195 ABC transporter permease protein
YP_995013.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll7194 ABC transporter permease protein
YP_995014.1	PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_B2706 putative FAD dependent oxidoreductase
YP_995015.1	KEGG: bja:bsl7192 putative sarcosine oxidase alpha subunit
YP_995016.1	PFAM: glucose-inhibited division protein A; HI0933 family protein; BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB0992 probable pyridine nucleotide-disulphide oxidoreductase
YP_995017.1	PFAM: FAD dependent oxidoreductase; KEGG: bja:bll7190 putative sarcosine oxidase beta subunit
YP_995018.2	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_995019.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_995020.1	KEGG: pol:Bpro_2851 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS
YP_995021.1	KEGG: rfr:Rfer_2011 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_995022.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_2853 ribosomal RNA methyltransferase RrmJ/FtsJ
YP_995023.1	PFAM: protein of unknown function UPF0044; KEGG: rfr:Rfer_2009 protein of unknown function UPF0044
YP_995024.1	KEGG: par:Psyc_1205 hypothetical protein
YP_995025.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pau:PA14_32700 probable transcriptional regulator
YP_995026.1	KEGG: pol:Bpro_4383 putative porin precursor transmembrane protein
YP_995027.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4419 hypothetical protein
YP_995028.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_A2865 predicted acyl-CoA transferase/carnitine dehydratase
YP_995029.1	PFAM: beta-lactamase; KEGG: gvi:glr3508 hypothetical protein
YP_995030.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: reu:Reut_B3890 helix-turn-helix, fis-type
YP_995031.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_C1036 putative acyl-CoA transferase
YP_995032.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_C1035 putative enoyl-CoA hydratase/isomerase
YP_995033.1	PFAM: AMP-dependent synthetase and ligase; KEGG: mes:Meso_2952 AMP-dependent synthetase and ligase
YP_995034.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mes:Meso_2951 enoyl-CoA hydratase/isomerase
YP_995035.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: mes:Meso_2950 short-chain dehydrogenase/reductase SDR
YP_995036.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mes:Meso_2949 acyl-CoA dehydrogenase-like
YP_995037.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA1411 possible enoyl-CoA hydratase/isomerase
YP_995038.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dra:DR0113 short chain dehydrogenase
YP_995039.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB4717 hypothetical protein
YP_995040.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0847 hypothetical protein
YP_995041.1	PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_5537 MaoC-like dehydratase
YP_995042.1	KEGG: bxe:Bxe_C0860 putative thiolase
YP_995043.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reu:Reut_A1835 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal
YP_995044.1	PFAM: protein of unknown function DUF35; KEGG: sma:SAV3825 hypothetical protein
YP_995045.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ttj:TTHA0290 probable enoyl-CoA hydratase
YP_995046.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B4564 L-carnitine dehydratase/bile acid-inducible protein F
YP_995047.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mes:Meso_2957 L-carnitine dehydratase/bile acid-inducible protein F
YP_995049.1	KEGG: reh:H16_A0977 hypothetical protein
YP_995050.1	KEGG: reh:H16_A0978 hypothetical protein
YP_995051.1	KEGG: bxe:Bxe_B2916 hypothetical protein
YP_995054.1	PFAM: SAF domain; KEGG: bbr:BB2096 hypothetical protein
YP_995055.1	PFAM: type II and III secretion system protein; KEGG: bbr:BB2097 putative secretory apparatus
YP_995056.1	PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: reh:H16_A0983 flp pilus assembly ATPase CpaF
YP_995057.1	PFAM: type II secretion system protein; KEGG: bpe:BP2525 hypothetical protein
YP_995058.1	PFAM: type II secretion system protein; KEGG: bxe:Bxe_B2923 putative type II secretion system protein F
YP_995059.1	PFAM: protein of unknown function DUF192; KEGG: sth:STH1923 hypothetical protein
YP_995062.1	PFAM: TadE family protein; KEGG: reh:H16_A0987 flp pilus assembly protein TadG
YP_995063.1	KEGG: gvi:gll0213 unknown protein
YP_995064.1	KEGG: ppu:PP_4047 hypothetical protein
YP_995065.1	KEGG: gvi:gll0213 unknown protein
YP_995066.1	KEGG: ppu:PP_4047 hypothetical protein
YP_995067.1	KEGG: gvi:gll0213 unknown protein
YP_995068.1	KEGG: ppu:PP_4047 hypothetical protein
YP_995069.1	KEGG: ppu:PP_4047 hypothetical protein
YP_995070.1	KEGG: lin:lin1649 hypothetical protein
YP_995072.1	catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent
YP_995073.1	PFAM: isochorismatase hydrolase; KEGG: rfr:Rfer_2323 isochorismatase hydrolase
YP_995074.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: bam:Bamb_6437 cystathionine gamma-synthase
YP_995075.1	Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates
YP_995076.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A1674 probable extra-cytoplasmic solute receptor
YP_995077.1	TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bte:BTH_I2086 acetylornithine deacetylase
YP_995078.1	PFAM: Saccharopine dehydrogenase; KEGG: bpe:BP3682 putative dehydrogenase
YP_995079.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_2154 transcriptional regulator, AsnC family
YP_995080.1	TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_2153 TIM-barrel protein, YjbN family
YP_995081.1	TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_2173 polyhydroxyalkanoate depolymerase, intracellular
YP_995082.1	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: pol:Bpro_2170 electron transport complex, RnfABCDGE type, B subunit
YP_995083.1	catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate
YP_995084.1	KEGG: rfr:Rfer_2046 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein
YP_995085.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_1995 twitching motility protein
YP_995086.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_995087.1	involved in methylation of ribosomal protein L3
YP_995088.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1992 ABC transporter related
YP_995089.1	KEGG: cch:Cag_1772 hypothetical protein
YP_995090.1	PFAM: transposase, IS4 family protein; KEGG: xom:XOO_1836 ISXoo5 transposase
YP_995091.1	SMART: AAA ATPase; KEGG: mhu:Mhun_2627 hypothetical protein
YP_995092.1	KEGG: reu:Reut_A2750 hypothetical protein
YP_995093.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_995094.1	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: rfr:Rfer_3774 excinuclease ABC, A subunit
YP_995095.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_A2733 transcriptional regulator, LysR family
YP_995096.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bja:bll6695 GMC type oxidoreductase
YP_995097.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_II1835 ABC transporter domain protein
YP_995098.1	PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3708 ABC branched chain amino acid family transporter, fused ATPase and inner membrane subunit
YP_995099.1	PFAM: inner-membrane translocator; KEGG: gsu:GSU1733 branched-chain amino acid ABC transporter, permease protein
YP_995100.1	PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A3706 ABC branched chain amino acid family transporter, periplasmic ligand binding protein
YP_995101.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_995102.1	PFAM: pyruvate carboxyltransferase; KEGG: bxe:Bxe_A2729 putative hydroxymethylglutaryl-CoA lyase
YP_995103.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A2730 predicted acyl-CoA transferases/carnitine dehydratase, CaiB/BaiF family
YP_995104.1	PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_3773 major facilitator superfamily MFS_1
YP_995105.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pol:Bpro_4565 single-strand binding protein
YP_995106.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_995107.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reh:H16_A2421 transcriptional regulator, LysR-family
YP_995108.1	PFAM: protein of unknown function DUF453; KEGG: reh:H16_A2419 two domain protein: PF04304 and PF03401
YP_995109.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4553 uncharacterized protein UPF0065
YP_995110.1	PFAM: porin, Gram-negative type; KEGG: pol:Bpro_4558 porin, gram-negative type
YP_995111.1	KEGG: rfr:Rfer_1034 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase
YP_995112.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_995113.1	KEGG: rfr:Rfer_3814 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_995114.1	PFAM: NHL repeat containing protein; SMP-30/Gluconolaconase/LRE domain protein; KEGG: rha:RHA1_ro06693 5-valerolactone hydrolase
YP_995116.1	involved in the transport of C4-dicarboxylates across the membrane
YP_995118.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:blr3335 short chain dehydrogenase
YP_995119.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB0221 acetyltransferase (GNAT) family protein
YP_995120.1	PFAM: Amidase; KEGG: bbr:BB2488 putative amidase
YP_995121.1	PFAM: polysaccharide deacetylase; KEGG: bja:bll7202 hypothetical protein
YP_995122.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_4411 short-chain dehydrogenase/reductase SDR
YP_995123.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gvi:glr2898 probable ABC transporter ATP-binding protein
YP_995124.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1138 branched-chain amino acid transport system ATP-binding protein
YP_995125.1	PFAM: Extracellular ligand-binding receptor; KEGG: gka:GK2980 branched chain amino acid ABC transporter (substrate-binding protein)
YP_995126.1	PFAM: regulatory proteins, IclR; KEGG: bpe:BP0727 probable transcriptional regulator
YP_995127.1	PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_1406 NUDIX hydrolase
YP_995128.1	PFAM: cobalamin biosynthesis protein CbiB; KEGG: pol:Bpro_1695 hypothetical protein
YP_995129.1	TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: rfr:Rfer_1409 GTPase EngC
YP_995130.1	PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rfr:Rfer_1410 transcriptional coactivator/pterin dehydratase
YP_995131.1	PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase
YP_995132.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_995133.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like
YP_995134.1	PFAM: inner-membrane translocator; KEGG: reh:H16_A2253 ABC-type transporter, permease component
YP_995136.1	PFAM: inner-membrane translocator; KEGG: reh:H16_A2254 ABC-type transporter, permease component
YP_995137.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA4399 possible branched-chain amino acid transport system ATP-binding protein
YP_995138.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A1985 ABC transporter related
YP_995139.1	PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_A1986 extracellular ligand-binding receptor
YP_995140.1	PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_A1986 extracellular ligand-binding receptor
YP_995142.1	TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: bte:BTH_II0784 agmatinase, putative
YP_995143.1	PFAM: extracellular solute-binding protein, family 3; KEGG: ppr:PBPRB1128 hypothetical amino acid ABC transporter, periplasmic amino acid-binding protein
YP_995144.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_4520 arginine/ornithine ABC transporter, permease protein
YP_995145.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_52770 arginine/ornithine transport protein AotM
YP_995146.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1521 ABC transporter related
YP_995147.1	PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: bur:Bcep18194_C6721 acetolactate synthase, large subunit
YP_995148.1	PFAM: class II aldolase/adducin family protein; KEGG: pfo:Pfl_3900 hypothetical protein
YP_995149.1	KEGG: eli:ELI_12510 hypothetical protein
YP_995150.1	PFAM: protein of unknown function UPF0060; KEGG: hch:HCH_03337 hypothetical protein
YP_995151.1	TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pfl:PFL_5051 heavy metal sensor histidine kinase
YP_995152.1	TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pau:PA14_45880 putative two-component response regulator
YP_995153.1	PFAM: acriflavin resistance protein; KEGG: rme:Rmet_0600 acriflavin resistance protein
YP_995154.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_0601 secretion protein HlyD
YP_995155.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS03144 putative outer membrane channel lipoprotein transmembrane
YP_995156.1	PFAM: band 7 protein; KEGG: jan:Jann_1794 band 7 protein
YP_995157.1	PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_3020 putative UreA/short-chain amide transport system substrate-binding protein
YP_995158.1	PFAM: inner-membrane translocator; KEGG: rpd:RPD_4291 inner-membrane translocator
YP_995159.1	PFAM: inner-membrane translocator; KEGG: hwa:HQ3617A ABC-type UreA transport system, permease protein II
YP_995160.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_4289 ABC transporter related
YP_995161.1	PFAM: Amidase; ABC transporter related; SMART: AAA ATPase; KEGG: bch:Bcen2424_4287 amidase
YP_995162.1	PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A3514 long-chain-fatty-acid-CoA ligase
YP_995163.1	KEGG: rfr:Rfer_3948 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase
YP_995164.1	KEGG: pol:Bpro_4686 transcriptional regulator, MarR family
YP_995165.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4687 two component transcriptional regulator, winged helix family
YP_995166.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: rfr:Rfer_3951 periplasmic sensor signal transduction histidine kinase
YP_995168.1	PFAM: peptidase S14, ClpP; KEGG: pau:PA14_21030 putative ATP-dependent Clp protease proteolytic subunit
YP_995169.1	KEGG: pol:Bpro_4234 hypothetical protein
YP_995170.1	PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_4240 aminotransferase, class I and II
YP_995172.1	KEGG: pol:Bpro_4243 hypothetical protein
YP_995173.1	PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_3732 phosphoglycerate mutase
YP_995175.1	PFAM: Threonyl/alanyl tRNA synthetase, SAD; KEGG: bam:Bamb_2316 threonyl/alanyl tRNA synthetase, SAD
YP_995176.1	PFAM: Creatininase; KEGG: rfr:Rfer_3746 creatininase
YP_995177.1	KEGG: rfr:Rfer_2028 hypothetical protein
YP_995178.1	KEGG: rfr:Rfer_0458 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_995179.1	KEGG: rso:RS03192 probable lipoprotein signal peptide
YP_995180.1	PFAM: Allophanate hydrolase subunit 1; KEGG: bpe:BP0152 hypothetical protein
YP_995181.1	KEGG: bbr:BB4478 hypothetical protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2
YP_995182.1	PFAM: LamB/YcsF family protein; KEGG: bbr:BB4479 hypothetical protein
YP_995183.1	KEGG: pol:Bpro_0249 putative transmembrane protein
YP_995184.1	KEGG: pol:Bpro_0248 ferredoxin-like
YP_995185.1	TIGRFAM: outer membrane protein; KEGG: pfo:Pfl_0160 glycosyl hydrolase, BNR repeat
YP_995186.1	PFAM: VanZ family protein; KEGG: rfr:Rfer_3803 VanZ like protein
YP_995187.1	PFAM: conserved hypothetical protein 701; KEGG: pol:Bpro_0246 conserved hypothetical protein 701
YP_995188.1	PFAM: regulatory protein, TetR; KEGG: reu:Reut_A1792 regulatory protein, TetR
YP_995189.1	KEGG: mes:Meso_3542 NlpA lipoprotein
YP_995190.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_3541 ABC transporter related
YP_995191.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_3540 binding-protein-dependent transport systems inner membrane component
YP_995192.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_3540 binding-protein-dependent transport systems inner membrane component
YP_995193.1	PFAM: cyclase family protein; KEGG: bur:Bcep18194_C7460 putative cyclase
YP_995194.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_995195.1	PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_0244 Mg2+ transporter protein, CorA-like
YP_995196.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: rfr:Rfer_4040 molybdenum cofactor biosynthesis protein C
YP_995197.1	KEGG: pol:Bpro_4670 FimB
YP_995198.1	PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_4041 peptidase M48, Ste24p
YP_995199.1	PFAM: membrane protein of unknown function; KEGG: rfr:Rfer_4042 membrane protein of unknown function
YP_995200.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bpm:BURPS1710b_3192 acetyltransferase, GNAT family
YP_995201.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2009 uncharacterized protein UPF0065
YP_995202.1	KEGG: pol:Bpro_2010 hypothetical protein
YP_995203.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane
YP_995204.1	P-type ATPase involved in magnesium influx
YP_995205.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_995206.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2507 methyl-accepting chemotaxis sensory transducer
YP_995207.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: pfl:PFL_2353 hypothetical protein
YP_995208.1	PFAM: Endoribonuclease L-PSP; KEGG: rfr:Rfer_2506 endoribonuclease L-PSP
YP_995209.1	TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: rfr:Rfer_2476 DNA internalization-related competence protein ComEC/Rec2
YP_995210.1	PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pol:Bpro_3157 protein of unknown function DUF404
YP_995211.1	PFAM: protein of unknown function DUF403; KEGG: pol:Bpro_3156 protein of unknown function DUF403
YP_995212.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1270 uncharacterized protein UPF0065
YP_995213.1	PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_1269 MmgE/PrpD
YP_995214.1	KEGG: xom:XOO_2345 transposase
YP_995215.1	PFAM: extracellular solute-binding protein, family 5; KEGG: atc:AGR_pAT_490 OphA, putative peptide transport system substrate-binding protein
YP_995216.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr9211 dipeptide transport system permease protein
YP_995217.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_5625 peptide ABC transporter, permease protein
YP_995218.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_5624 peptide ABC transporter, ATP-binding protein
YP_995219.1	PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: tcr:508699.120 dipeptidyl-peptidase Pfam: AXE1 Peptidase_S15 Peptidase_S9 Abhydrolase_1 PepX_C PROSITE: TYR_PHOSPHATASE_PTP
YP_995221.1	Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline
YP_995222.1	Catalyzes the deamination of cytosine to uracil and ammonia
YP_995223.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bur:Bcep18194_B2475 amidohydrolase
YP_995224.1	KEGG: atc:AGR_L_359 oligopeptide ABC transporter (ATP-binding protein); TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_995225.1	KEGG: bbr:BB4025 putative ABC transport ATP-binding subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_995226.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4910 putative transport system permease protein
YP_995227.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4027 putative binding-protein-dependent permease
YP_995228.1	PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_2113 extracellular solute-binding protein, family 5
YP_995229.1	PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_2113 extracellular solute-binding protein, family 5
YP_995232.1	PFAM: helix-turn-helix, Fis-type; GAF domain protein; KEGG: pol:Bpro_5567 putative transcriptional regulator, fis family
YP_995233.1	PFAM: Pyrrolo-quinoline quinone; KEGG: pol:Bpro_5302 pyrrolo-quinoline quinone
YP_995234.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro00763 probable formyl-CoA transferase
YP_995235.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bch:Bcen2424_5509 enoyl-CoA hydratase/isomerase
YP_995236.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5356 uncharacterized protein UPF0065
YP_995237.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_5360 transcriptional regulator, LysR family
YP_995238.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5382 uncharacterized protein UPF0065
YP_995239.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_5435 L-carnitine dehydratase/bile acid-inducible protein F
YP_995240.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB0530 regulatory protein
YP_995241.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A2866 probable extra-cytoplasmic solute receptor
YP_995242.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rfr:Rfer_1677 tRNA/rRNA methyltransferase (SpoU)
YP_995243.1	PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_1240 MaoC-like dehydratase
YP_995254.1	KEGG: gme:Gmet_1475 YD repeat protein
YP_995262.1	PFAM: transglutaminase domain protein; KEGG: bur:Bcep18194_A4937 rhs family protein
YP_995263.1	PFAM: FG-GAP repeat protein; KEGG: mxa:MXAN_1046 FG-GAP repeat/HVR domain protein
YP_995264.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_1573 enoyl-CoA hydratase/isomerase
YP_995265.1	PFAM: peptidase M61 domain protein; KEGG: rfr:Rfer_1574 peptidase M61
YP_995266.1	KEGG: pol:Bpro_1124 putative thiol:disulphide interchange protein (periplasmic)
YP_995267.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: rfr:Rfer_1576 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
YP_995268.1	PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: pol:Bpro_1126 MOSC-like beta barrel
YP_995269.1	TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: bpe:BP3121 hypothetical protein
YP_995270.1	KEGG: eba:ebB86 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system
YP_995271.1	PFAM: helix-turn-helix domain protein; KEGG: bpa:BPP2999 putative DNA-binding protein
YP_995272.1	KEGG: xom:XOO_2345 transposase
YP_995273.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_995274.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_995275.1	PFAM: protein of unknown function DUF493; KEGG: rfr:Rfer_3936 protein of unknown function DUF493
YP_995276.1	KEGG: rfr:Rfer_0113 putative ATP synthase protein I
YP_995277.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_995278.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_995279.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_995280.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_995281.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_995282.1	KEGG: pol:Bpro_0326 ATP synthase F1, gamma subunit; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit
YP_995283.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_995284.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_995285.1	KEGG: syn:slr0725 hypothetical protein
YP_995286.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_995287.1	molecular chaperone
YP_995288.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_0606 pseudouridine synthase, Rsu
YP_995290.1	KEGG: rle:RL2519 hypothetical protein
YP_995291.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0597 uncharacterized protein UPF0065
YP_995292.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0596 uncharacterized protein UPF0065
YP_995293.1	KEGG: plu:plu3302 hypothetical protein
YP_995294.1	KEGG: plu:plu3301 hypothetical protein
YP_995295.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_3190 cyclopropane-fatty-acyl-phospholipid synthase
YP_995296.1	PFAM: regulatory protein, MarR; KEGG: pol:Bpro_0592 transcriptional regulator, MarR family
YP_995297.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_995298.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0590 acyl-CoA dehydrogenase-like
YP_995299.1	KEGG: sat:SYN_02417 2-aminobenzoate-CoA ligase
YP_995300.1	PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_0587 endoribonuclease L-PSP
YP_995302.1	KEGG: noc:Noc_2270 putative type-4 fimbrial pilin related signal peptide protein
YP_995303.1	TIGRFAM: type IV pilus modification protein PilV; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV
YP_995304.1	KEGG: reh:H16_A2837 type IV pilus assembly protein PilW
YP_995305.1	KEGG: rfr:Rfer_2662 putative transmembrane protein
YP_995306.1	KEGG: noc:Noc_2274 fimbrial assembly protein
YP_995307.1	KEGG: net:Neut_1832 fimbrial protein pilin
YP_995309.1	PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_3461 FAD dependent oxidoreductase
YP_995310.1	PFAM: transposase, IS4 family protein; KEGG: xom:XOO_1836 ISXoo5 transposase
YP_995311.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_995312.1	PFAM: conserved hypothetical protein 103; KEGG: rfr:Rfer_1458 conserved hypothetical protein 103
YP_995313.1	KEGG: rfr:Rfer_1457 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase
YP_995314.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rfr:Rfer_3829 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_995315.1	PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B3957 protein of unknown function DUF849, prokaryotic
YP_995316.1	PFAM: pyruvate carboxyltransferase; KEGG: rfr:Rfer_3824 pyruvate carboxyltransferase
YP_995317.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rfr:Rfer_3823 YbaK/prolyl-tRNA synthetase associated protein
YP_995318.1	PFAM: protein of unknown function DUF1289; KEGG: rfr:Rfer_3823 YbaK/prolyl-tRNA synthetase associated protein
YP_995319.1	PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_3816 DsbA oxidoreductase
YP_995320.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pol:Bpro_4142 general substrate transporter
YP_995321.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_995322.1	PFAM: OsmC family protein; KEGG: rfr:Rfer_0732 OsmC-like protein
YP_995323.1	KEGG: pol:Bpro_3571 hypothetical protein
YP_995324.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3884 hypothetical protein
YP_995325.1	KEGG: plu:plu2710 hypothetical protein
YP_995326.1	KEGG: plu:plu2709 hypothetical protein
YP_995327.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20674 putative transcriptional regulator, LacI family protein
YP_995328.1	KEGG: sus:Acid_0831 hypothetical protein
YP_995329.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0072 putative oligopeptide transport system permease protein
YP_995330.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0073 putative oligopeptide transport system permease protein
YP_995331.1	KEGG: tma:TM0303 putative oligopeptide transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_995332.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:RL4413 putative ATP-binding component of ABC transporter
YP_995333.1	PFAM: extracellular solute-binding protein, family 5; KEGG: tma:TM0071 putative oligopeptide transport system substrate-binding protein
YP_995334.1	KEGG: rfr:Rfer_2930 hypothetical protein
YP_995335.1	PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3255 protein of unknown function DUF214
YP_995336.1	PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: bam:Bamb_3882 pyridoxal-5'-phosphate-dependent enzyme, beta subunit
YP_995337.1	KEGG: bma:BMA0304 hypothetical protein
YP_995338.1	PFAM: ROK family protein; KEGG: pol:Bpro_3207 hypothetical protein
YP_995339.1	PFAM: RbsD or FucU transport; KEGG: pol:Bpro_3206 RbsD or FucU transport
YP_995340.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3205 ABC transporter related
YP_995341.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_1902 inner-membrane translocator
YP_995342.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_3203 periplasmic binding protein/LacI transcriptional regulator
YP_995344.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_3203 periplasmic binding protein/LacI transcriptional regulator
YP_995345.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_995346.1	PFAM: PfkB domain protein; KEGG: pol:Bpro_3202 PfkB
YP_995347.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bja:bll5494 hypothetical protein
YP_995348.1	PFAM: GAF domain protein; KEGG: bja:bll5495 hypothetical protein
YP_995349.1	PFAM: General substrate transporter; protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: bja:bll5496 hypothetical metabolite transport protein
YP_995350.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_0114 phenylacetic acid degradation-related protein
YP_995351.1	KEGG: reu:Reut_B5396 extracellular ligand-binding receptor
YP_995352.1	KEGG: reu:Reut_B5396 extracellular ligand-binding receptor
YP_995353.1	TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_3399 glutamate--cysteine ligase, monofunctional
YP_995354.1	KEGG: pol:Bpro_2657 hypothetical protein
YP_995355.1	PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_2658 ABC-type transport system periplasmic component
YP_995356.1	KEGG: pol:Bpro_2659 ABC-type transport system ipermease component
YP_995357.1	KEGG: xom:XOO_2998 hypothetical protein
YP_995358.1	KEGG: cte:CT0680 hypothetical protein
YP_995359.1	KEGG: cte:CT0681 hypothetical protein
YP_995360.1	PFAM: HDOD; KEGG: tbd:Tbd_1938 putative diguanylate phosphodiesterase (EAL domain)
YP_995361.1	TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: rfr:Rfer_3724 flagellin-like
YP_995362.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3723 flagellar hook-associated protein
YP_995363.1	KEGG: rfr:Rfer_3722 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2
YP_995364.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_995365.1	PFAM: flagellar L-ring protein; KEGG: rfr:Rfer_3720 flagellar L-ring protein
YP_995366.1	TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3719 flagellar basal-body rod FlgG
YP_995367.1	TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: rfr:Rfer_3718 flagellar basal-body rod FlgF
YP_995368.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: rfr:Rfer_3717 protein of unknown function DUF1078-like
YP_995369.1	PFAM: flagellar hook capping protein; KEGG: rfr:Rfer_3716 flagellar hook capping protein
YP_995370.1	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3715 flagellar basal-body rod protein FlgC
YP_995371.1	TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: rfr:Rfer_3714 flagellar basal-body rod protein FlgB
YP_995372.1	PFAM: SAF domain; KEGG: rfr:Rfer_3713 flageller protein FlgA
YP_995373.1	KEGG: rfr:Rfer_3712 anti-sigma-28 factor, FlgM
YP_995375.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_995376.1	PFAM: Sporulation domain protein; KEGG: rfr:Rfer_0774 sporulation related
YP_995377.1	PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_4488 DsbA oxidoreductase
YP_995378.1	PFAM: OstA family protein; KEGG: rfr:Rfer_0776 OstA-like protein
YP_995379.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4486 ABC transporter related
YP_995380.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: rfr:Rfer_0778 sigma-54 (RpoN)
YP_995381.1	PFAM: putative RNA methylase; THUMP domain protein; KEGG: pol:Bpro_4484 putative RNA methylase
YP_995382.1	PFAM: CinA domain protein; KEGG: pol:Bpro_4476 CinA-like
YP_995383.1	PFAM: phosphatidylglycerophosphatase A; KEGG: pol:Bpro_4475 phosphatidylglycerophosphatase A
YP_995384.1	KEGG: pol:Bpro_4471 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein
YP_995385.1	ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity
YP_995386.1	PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4469 sodium/hydrogen exchanger
YP_995387.1	protein associated with Co2+ and Mg2+ efflux
YP_995388.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: rfr:Rfer_0532 ribulose-phosphate 3-epimerase
YP_995389.1	KEGG: pol:Bpro_2271 membrane protein-like
YP_995390.1	KEGG: pol:Bpro_2272 putative signal peptide protein
YP_995391.1	PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: pol:Bpro_2278 lytic transglycosylase, catalytic
YP_995392.1	PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_1462 hydroxyacylglutathione hydrolase
YP_995393.1	PFAM: Methyltransferase type 11; KEGG: pol:Bpro_2280 hypothetical protein
YP_995394.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_995395.1	KEGG: rru:Rru_A2043 hypothetical protein
YP_995396.1	KEGG: rru:Rru_A2044 hypothetical protein
YP_995397.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_995398.1	PFAM: UspA domain protein; KEGG: rfr:Rfer_1666 UspA
YP_995399.1	PFAM: phospholipase A1; KEGG: rfr:Rfer_0525 phospholipase
YP_995400.1	PFAM: UvrD/REP helicase; KEGG: pol:Bpro_4281 UvrD/REP helicase
YP_995401.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rfr:Rfer_0750 sigma 54 modulation protein/ribosomal protein S30EA
YP_995402.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: pol:Bpro_4612 PTS IIA-like nitrogen-regulatory protein PtsN
YP_995403.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_995404.1	PFAM: ferric-uptake regulator; KEGG: pol:Bpro_4610 ferric uptake regulator, FUR family
YP_995405.1	KEGG: tbd:Tbd_2516 hypothetical protein
YP_995406.1	KEGG: pen:PSEEN5344 hypothetical protein
YP_995407.1	TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: pen:PSEEN5345 hypothetical protein
YP_995408.1	KEGG: pen:PSEEN5346 hypothetical protein
YP_995409.1	KEGG: rpc:RPC_2035 alpha/beta hydrolase fold
YP_995410.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3709 ABC branched chain amino acid family transporter, ATPase subunit
YP_995411.1	PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3708 ABC branched chain amino acid family transporter, fused ATPase and inner membrane subunit
YP_995412.1	PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A3707 ABC branched chain amino acid family transporter, inner membrane subunit
YP_995413.1	PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A3706 ABC branched chain amino acid family transporter, periplasmic ligand binding protein
YP_995414.1	PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A2232 multi drug efflux transporter
YP_995415.1	KEGG: pol:Bpro_3410 hypothetical protein
YP_995416.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:blr2842 hypothetical protein
YP_995417.1	PFAM: oxidoreductase domain protein; KEGG: bja:blr2840 oxidoreductase
YP_995418.1	KEGG: sme:SMc04131 hypothetical protein
YP_995419.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr2838 ABC transporter ATP-binding protein
YP_995420.1	KEGG: bja:blr2837 putative sulfonate/nitrate transport system substrate-binding protein
YP_995421.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr2836 ABC transporter permease protein
YP_995422.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5849 hypothetical protein
YP_995423.1	PFAM: regulatory protein, TetR; KEGG: bja:blr2835 transcriptional regulatory protein
YP_995424.1	KEGG: bur:Bcep18194_A6223 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_995425.1	KEGG: cvi:CV3664 probable isocitrate dehydrogenase (NADP); TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type
YP_995426.1	PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0433 FAD linked oxidase-like
YP_995427.1	KEGG: sat:SYN_02041 hypothetical cytosolic protein
YP_995428.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sat:SYN_02042 DNA modification methylase
YP_995429.1	PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: rfr:Rfer_3875 transport-associated
YP_995430.1	KEGG: rfr:Rfer_3874 phosphoheptose isomerase
YP_995431.1	PFAM: protein of unknown function UPF0102; KEGG: rfr:Rfer_3873 protein of unknown function UPF0102
YP_995432.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rfr:Rfer_3872 protein of unknown function UPF0011
YP_995433.1	PFAM: glycosyl transferase, family 2; Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: rru:Rru_B0044 glycosyl transferase, family 2
YP_995434.1	KEGG: lbl:LBL_1767 hypothetical protein
YP_995435.1	PFAM: Methyltransferase type 11; KEGG: pmt:PMT0110 hypothetical protein
YP_995436.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bat:BAS0264 hypothetical protein
YP_995437.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_1493 mandelate racemase/muconate lactonizing enzyme
YP_995438.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_1492 major facilitator superfamily MFS_1
YP_995439.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mlo:mll5243 3-oxoacyl-(acyl carrier protein) reductase
YP_995440.1	KEGG: bma:BMAA0373 fumarylacetoacetate hydrolase family protein
YP_995441.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_1489 transcriptional regulator, LysR family
YP_995442.1	PFAM: protein of unknown function UPF0074; KEGG: pfl:PFL_5628 rrf2 family protein, putative
YP_995443.1	activates fatty acids by binding to coenzyme A
YP_995444.1	KEGG: mxa:MXAN_6813 hypothetical protein
YP_995445.1	PFAM: UspA domain protein; KEGG: rfr:Rfer_2198 UspA
YP_995446.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B2439 probable extra-cytoplasmic solute receptor
YP_995447.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_2263 thioredoxin
YP_995448.1	KEGG: rfr:Rfer_2897 hypothetical protein
YP_995449.1	PFAM: UvrD/REP helicase; KEGG: pol:Bpro_2265 UvrD/REP helicase
YP_995450.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: abo:ABO_1434 transcriptional regulator, GntR family
YP_995451.1	TIGRFAM: methylisocitrate lyase; KEGG: rpa:RPA2395 putative carboxyphosphonoenolpyruvate phosphonomutase
YP_995452.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_995455.1	TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: rfr:Rfer_0654 5,10-methylenetetrahydrofolate reductase
YP_995456.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_4131 ribosomal RNA methyltransferase RrmJ/FtsJ
YP_995457.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_995458.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_995460.1	PFAM: aminotransferase class-III; KEGG: mlo:mlr6714 ornithine-oxo-acid transaminase
YP_995461.1	PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_0197 aldehyde dehydrogenase
YP_995462.1	PFAM: microcompartments protein; KEGG: mmc:Mmcs_0196 microcompartments protein
YP_995463.1	KEGG: rha:RHA1_ro10422 hypothetical protein
YP_995464.1	PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: mmc:Mmcs_0194 ethanolamine utilization protein EutN/carboxysome structural protein CcmL
YP_995465.1	PFAM: microcompartments protein; KEGG: mmc:Mmcs_0193 microcompartments protein
YP_995466.1	KEGG: rha:RHA1_ro10419 hypothetical protein
YP_995467.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_995468.1	PFAM: amino acid permease-associated region; KEGG: mmc:Mmcs_0199 amino acid permease-associated region
YP_995469.1	PFAM: regulatory protein, DeoR; KEGG: rru:Rru_A3010 transcriptional regulator, DeoR family
YP_995470.1	KEGG: sgl:SG1157 hypothetical protein
YP_995472.1	PFAM: HipA domain protein; KEGG: pfo:Pfl_0205 hypothetical protein
YP_995473.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA2549 carbohydrate ABC transporter, ATP-binding protein, putative
YP_995474.1	PFAM: ABC-2 type transporter; KEGG: pau:PA14_71960 membrane subunit of A-band LPS efflux transporter
YP_995475.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: noc:Noc_0767 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_995476.1	KEGG: eba:ebA1598 hypothetical protein
YP_995477.1	KEGG: noc:Noc_0763 hypothetical protein
YP_995478.1	TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: eba:ebA1602 general (type II) secretion pathway (GSP) D protein
YP_995479.1	KEGG: eba:ebA1607 hypothetical protein
YP_995480.1	KEGG: eba:ebA1609 general secretion pathway protein M
YP_995481.1	PFAM: Fimbrial assembly family protein; KEGG: eba:ebA1610 hypothetical protein, INTERPRO suggestion: probable fimbrial assembly
YP_995482.1	KEGG: eba:ebA1612 general secretory pathway protein K
YP_995483.1	KEGG: eba:ebA1615 general secretion pathway protein J
YP_995484.1	KEGG: eba:ebB44 general secretion pathway protein I
YP_995485.1	TIGRFAM: general secretion pathway protein H; KEGG: eba:ebA1616 general secretion protein H
YP_995486.1	TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: eba:ebB45 general secretion pathway protein G
YP_995487.1	PFAM: type II secretion system protein; KEGG: eba:ebA1619 general secretion pathway protein F
YP_995488.1	KEGG: eba:ebA1622 general secretion pathway protein E (type II traffic warden ATPase); TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase
YP_995490.1	PFAM: acyltransferase 3; KEGG: rru:Rru_A2716 acyltransferase 3
YP_995491.1	PFAM: GtrA family protein; KEGG: pst:PSPTO_1069 hypothetical protein
YP_995492.1	PFAM: transferase hexapeptide repeat containing protein; WxcM domain protein, C-terminal domain protein; KEGG: pst:PSPTO_1070 lipopolysaccharide biosynthesis protein
YP_995493.1	PFAM: glycosyl transferase, family 2; KEGG: pst:PSPTO_1071 glycosyl transferase, group 2 family protein
YP_995494.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pst:PSPTO_1072 aminotransferase, DegT/DnrJ/EryC1/StrS family
YP_995495.1	KEGG: eba:ebA2275 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related
YP_995496.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4018 glucose-1-phosphate thymidylyltransferase
YP_995497.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase
YP_995498.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4022 dTDP-glucose 4,6-dehydratase
YP_995499.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pol:Bpro_0816 sec-independent protein translocase TatC
YP_995500.1	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pol:Bpro_0815 twin-arginine translocation protein TatB
YP_995501.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: bbr:BB4863 Sec-independent protein translocase protein
YP_995502.1	PFAM: histidine triad (HIT) protein; KEGG: pol:Bpro_0813 histidine triad (HIT) protein
YP_995503.1	PFAM: Patatin; KEGG: pol:Bpro_3621 patatin
YP_995504.1	PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: rfr:Rfer_2953 phosphoribosyl-ATP pyrophosphohydrolase
YP_995505.1	PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: rfr:Rfer_2952 phosphoribosyl-AMP cyclohydrolase
YP_995506.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_995507.1	KEGG: pol:Bpro_0441 hypothetical protein
YP_995508.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_2866 tetratricopeptide TPR_2
YP_995509.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3792 uncharacterized protein UPF0065
YP_995510.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3116 twin-arginine translocation pathway signal
YP_995511.1	KEGG: ecj:JW0696 conserved hypothetical protein
YP_995512.1	KEGG: eba:ebA5346 transposase (IS4), fragment
YP_995516.1	PFAM: Negative transcriptional regulator; KEGG: pol:Bpro_2445 negative transcriptional regulator
YP_995517.1	KEGG: rfr:Rfer_3384 hypothetical protein
YP_995518.1	PFAM: helix-turn-helix domain protein; KEGG: rfr:Rfer_3385 transcriptional regulator, XRE family
YP_995519.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_46950 putative ATP-binding component of ABC transporter
YP_995520.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bch:Bcen2424_6609 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
YP_995521.1	PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rle:RL4485 putative ferredoxin containing dehydrogenase
YP_995522.1	TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bja:blr3302 dihydrodipicolinate synthase
YP_995523.1	PFAM: extracellular solute-binding protein, family 3; KEGG: rle:RL4482 putative solute-binding component of ABC transporter
YP_995524.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1255 amino acid ABC transporter, permease protein
YP_995525.1	catalyzes the hydrolytic cleavage of imides that range from linear to heterocyclic and that include hydantoins, dihydropyrimidines, and phthalimides
YP_995526.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bch:Bcen2424_6608 transcriptional regulator, GntR family
YP_995527.1	KEGG: yps:YPTB2264 hypothetical protein
YP_995528.1	KEGG: eba:ebA5346 transposase (IS4), fragment
YP_995529.1	KEGG: ecj:JW0696 conserved hypothetical protein
YP_995530.1	TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B1918 benzoate-coenzyme A ligase
YP_995531.1	consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate
YP_995532.1	cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA
YP_995533.1	KEGG: pol:Bpro_1629 benzoyl-CoA oxygenase component B
YP_995534.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: reh:H16_B1912 benzoyl-CoA dioxygenase A
YP_995535.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll7191 putative oxidoreductase
YP_995536.1	KEGG: atc:AGR_C_4267 multiple sugar-binding periplasmic receptor ChvE precursor
YP_995537.1	KEGG: atc:AGR_C_4267 multiple sugar-binding periplasmic receptor ChvE precursor
YP_995538.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll5657 sugar ABC transporter (ATP-binding protein)
YP_995539.1	PFAM: inner-membrane translocator; KEGG: mes:Meso_0840 inner-membrane translocator
YP_995540.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_995541.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dar:Daro_0571 sulphate anion transporter
YP_995543.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bbr:BB2654 GntR-family transcriptional regulator
YP_995544.1	TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rme:Rmet_1610 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
YP_995545.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bbr:BB1884 putative solute-binding transport protein (periplasmic)
YP_995546.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_1615 binding-protein-dependent transport systems inner membrane component
YP_995547.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_1616 binding-protein-dependent transport systems inner membrane component
YP_995548.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bbr:BB1884 putative solute-binding transport protein (periplasmic)
YP_995550.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bbr:BB1884 putative solute-binding transport protein (periplasmic)
YP_995551.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: rme:Rmet_1617 ABC transporter-related protein
YP_995552.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_0883 extracellular solute-binding protein, family 1
YP_995553.1	PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_0884 FAD dependent oxidoreductase
YP_995554.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_0885 BFD-like (2Fe-2S)-binding protein
YP_995555.1	KEGG: rfr:Rfer_0886 hypothetical protein
YP_995556.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0887 binding-protein-dependent transport systems inner membrane component
YP_995557.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0888 binding-protein-dependent transport systems inner membrane component
YP_995558.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_0889 ABC transporter related
YP_995561.1	KEGG: pol:Bpro_4058 isoquinoline 1-oxidoreductase
YP_995562.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:blr6357 transcriptional regulatory protein
YP_995563.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mka:MK0602 homolog of ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, permease component
YP_995564.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA4162 putative taurine ABC transport system permease protein
YP_995565.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO7545 putative ABC-transport protein, ATP-binding component.
YP_995566.1	KEGG: bsu:BG10656 aliphatic sulfonates transport system substrate-binding protein
YP_995567.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_995568.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_C6091 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR
YP_995569.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_C6089 zinc-containing alcohol dehydrogenase superfamily
YP_995570.1	PFAM: major facilitator superfamily MFS_1; KEGG: rle:RL1403 putative transmembrane efflux protein
YP_995571.1	KEGG: sco:SCP1.233A putative atp/gtp-binding protein, mmyx
YP_995572.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_995573.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: rfr:Rfer_1467 molybdopterin-guanine dinucleotide biosynthesis protein A
YP_995574.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: rfr:Rfer_1466 MoeA-like, domain I and II
YP_995575.1	PFAM: Thioredoxin domain; KEGG: reh:H16_B1266 thioredoxin
YP_995576.1	PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2283 acriflavin resistance protein
YP_995577.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2282 secretion protein HlyD
YP_995578.1	PFAM: protein of unknown function DUF989; KEGG: pol:Bpro_1430 putative transmembrane protein
YP_995579.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rsp:RSP_3399 carbon-nitrogen hydrolase family protein
YP_995580.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsp:RSP_3398 hypothetical protein
YP_995581.1	KEGG: rsp:RSP_3397 ABC opine/polyamine transporter, periplasmic binding protein
YP_995582.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_3396 ABC opine/polyamine transporter, ATPase subunit
YP_995583.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3395 ABC opine/polyamine transporter, inner membrane subunit
YP_995584.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3393 ABC opine/polyamine transporter, inner membrane subunit
YP_995585.1	PFAM: aldehyde dehydrogenase; KEGG: rfr:Rfer_0880 aldehyde dehydrogenase
YP_995586.1	PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_3904 extracellular solute-binding protein, family 3
YP_995587.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit
YP_995588.1	PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: reh:H16_B0313 acetolactate synthase large subunit (TPP dependent)
YP_995589.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr8118 ABC transporter permease protein
YP_995590.1	PFAM: extracellular solute-binding protein, family 3; KEGG: bja:blr6816 hypothetical protein
YP_995591.1	PFAM: FAD dependent oxidoreductase; KEGG: bja:bll6812 putative dehydrogenase
YP_995592.1	KEGG: bja:bll6811 hypothetical protein
YP_995593.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bja:bll6810 transcriptional regulatory protein
YP_995594.1	PFAM: HpcH/HpaI aldolase; KEGG: rfr:Rfer_0941 2-dehydro-3-deoxyglucarate aldolase
YP_995595.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_995596.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources
YP_995597.1	PFAM: PfkB domain protein; KEGG: bja:bll6351 hypothetical sugar kinase
YP_995598.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bja:bll6352 ABC transporter ATP-binding protein
YP_995599.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll6353 putative alcohol dehydrogenase
YP_995600.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll6354 ABC transporter permease protein
YP_995601.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll6355 ABC transporter permease protein
YP_995602.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bja:bll6356 ABC transporter substrate-binding protein
YP_995603.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:blr6357 transcriptional regulatory protein
YP_995604.1	PFAM: zinc finger, SWIM domain protein; KEGG: nha:Nham_2838 zinc finger, SWIM-type
YP_995605.1	phosphate acetyltransferase; NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate
YP_995606.1	PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: xac:XAC3426 flavin monoamine oxidase-related protein
YP_995607.1	PFAM: cytochrome c, class I; KEGG: bxe:Bxe_B1534 putative cytochrome c6
YP_995608.1	PFAM: Endoribonuclease L-PSP; KEGG: xom:XOO_1121 TdcF protein
YP_995609.1	PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nha:Nham_2839 SNF2-related
YP_995610.1	PFAM: FAD dependent oxidoreductase; KEGG: reu:Reut_A1449 putative transmembrane oxidoreductase protein
YP_995611.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1882 probable dipeptide transmembrane ABC transporter protein
YP_995612.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1883 probable dipeptide transmembrane ABC transporter protein
YP_995613.1	KEGG: rso:RSc1884 probable oligopeptide ATP-binding ABC transporter protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_995614.1	KEGG: rso:RSc1885 probable oligopeptide ATP-binding ABC transporter protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_995615.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rso:RSc1886 probable periplasmic dipeptide transport protein precursor
YP_995616.1	PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; KEGG: rso:RSc1887 putative acyl coenzyme A thioester hydrolase protein
YP_995617.1	KEGG: reh:H16_A1585 hypothetical membrane associated protein
YP_995618.1	TIGRFAM: uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: reh:H16_A1584 hypothetical protein
YP_995619.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2098 binding-protein-dependent transport systems inner membrane component
YP_995620.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_03950 polyamine transport protein PotH
YP_995621.1	KEGG: pol:Bpro_2096 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase
YP_995622.1	PFAM: aminotransferase class-III; KEGG: rfr:Rfer_0351 aminotransferase class-III
YP_995623.1	PFAM: glutamine synthetase, catalytic region; KEGG: rfr:Rfer_0350 glutamate--ammonia ligase
YP_995624.1	PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_0347 FAD dependent oxidoreductase
YP_995625.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_995626.1	PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: ade:Adeh_3743 biotin/lipoyl attachment protein
YP_995627.1	PFAM: CoA-binding domain protein; KEGG: rpd:RPD_3312 CoA-binding
YP_995628.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3801 uncharacterized protein UPF0065
YP_995629.1	PFAM: carboxyl transferase; KEGG: reu:Reut_B3891 propionyl-CoA carboxylase
YP_995630.1	PFAM: Amidase; KEGG: dar:Daro_0075 amidase
YP_995631.1	KEGG: eca:ECA3956 ABC transporter, substrate binding protein
YP_995632.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3955 ABC transporter protein, membrane protein
YP_995633.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3954 ABC transporter, ATP-binding protein
YP_995634.1	PFAM: basic membrane lipoprotein; KEGG: pst:PSPTO_1360 bmp family protein
YP_995635.1	PFAM: inner-membrane translocator; KEGG: bja:blr6149 ABC transporter permease protein
YP_995636.1	PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B1370 ABC transporter, inner membrane subunit
YP_995637.1	PFAM: isochorismatase hydrolase; KEGG: cya:CYA_1918 isochorismatase family protein
YP_995638.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_B1372 ABC transporter, duplicated ATPase subunits
YP_995639.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: abo:ABO_2508 transcriptional regulator, GntR family
YP_995640.1	PFAM: Uncharacterized protein UPF0065; KEGG: ecp:ECP_4043 hypothetical protein
YP_995641.1	KEGG: mmr:Mmar10_1739 isovaleryl-CoA dehydrogenase
YP_995642.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_995644.1	PFAM: aldo/keto reductase; KEGG: sme:SMa1403 putative D-threo-aldose 1-dehydrogenase
YP_995645.1	PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_4157 carbamoyl-phosphate synthase L chain, ATP-binding
YP_995646.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rru:Rru_A3071 protein of unknown function DUF6, transmembrane
YP_995647.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pol:Bpro_4072 amidohydrolase
YP_995648.1	PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4071 transcriptional regulator, TetR family
YP_995649.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_4070 ferredoxin--NADP(+) reductase
YP_995650.1	KEGG: pol:Bpro_4068 hypothetical protein
YP_995651.1	PFAM: protein of unknown function DUF375; KEGG: pol:Bpro_4067 hypothetical protein
YP_995652.1	PFAM: protein of unknown function DUF1185; KEGG: pol:Bpro_4066 protein of unknown function DUF1185
YP_995653.1	PFAM: protein of unknown function DUF1185; KEGG: pol:Bpro_4065 protein of unknown function DUF1185
YP_995654.1	PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4064 extracellular ligand-binding receptor
YP_995655.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_995656.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_4063 inner-membrane translocator
YP_995657.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4062 ABC transporter related
YP_995658.1	PFAM: isochorismatase hydrolase; KEGG: bja:bll0677 bifunctional pyrazinamidase/nicotinamidase
YP_995660.1	KEGG: bpe:BP3435 hypothetical protein
YP_995661.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_2374 peroxidase
YP_995662.1	KEGG: ecs:ECs1344 hypothetical protein
YP_995663.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2376 thiosulphate-binding protein
YP_995664.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2377 sulfate ABC transporter, permease protein CysT
YP_995665.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2378 sulfate ABC transporter, permease protein CysW
YP_995666.1	KEGG: pol:Bpro_2379 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_995667.1	PFAM: Disulphide bond formation protein DsbB; KEGG: pol:Bpro_2385 disulphide bond formation protein DsbB
YP_995668.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_995669.1	KEGG: fal:FRAAL4158 hypothetical protein
YP_995670.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: bbr:BB4688 hypothetical protein
YP_995671.1	PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: mmr:Mmar10_1581 transcriptional regulator, AraC family
YP_995672.1	PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: fal:FRAAL4655 hypothetical protein; putative glutathione synthetase ATP-binding domain
YP_995673.1	KEGG: lpp:lpp2433 hypothetical protein
YP_995674.1	KEGG: rfr:Rfer_2106 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like
YP_995675.1	activates fatty acids by binding to coenzyme A
YP_995676.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4578 putative enoyl-CoA hydratase/isomerase
YP_995677.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4577 hypothetical protein
YP_995679.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rde:RD1_0505 acyl-CoA dehydrogenase
YP_995680.1	PFAM: coenzyme A transferase; KEGG: ecv:APECO1_2185 putative acetyl-CoA:acetoacetyl-CoA transferase
YP_995681.1	PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: sme:SMa1414 putative L-sorbose dehydrogenase, FAD-dependent
YP_995682.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMa1427 putative sugar ABC transporter, periplasmic solute-binding protein
YP_995683.1	PFAM: inner-membrane translocator; KEGG: sme:SMa1424 putative ABC transporter permease protein
YP_995684.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMa1421 probable ABC transporter ATP binding -protein
YP_995685.1	PFAM: inner-membrane translocator; KEGG: sme:SMa1418 putative ABC transporter permease protein
YP_995686.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3532 hypothetical protein
YP_995687.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: reu:Reut_B3531 (R)-2-hydroxyacid dehydrogenase
YP_995688.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: reu:Reut_B3530 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_995689.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: reu:Reut_C6087 altronate dehydratase
YP_995690.1	KEGG: reu:Reut_B3528 D-galactarate dehydratase/altronate hydrolase, N-terminal
YP_995691.1	PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: reu:Reut_B3533 regulatory protein GntR, HTH:UbiC transcription regulator-associated
YP_995692.1	PFAM: Extracellular ligand-binding receptor; KEGG: ape:APE2521 putative branched-chain amino acid transport system substrate-binding protein
YP_995693.1	PFAM: inner-membrane translocator; KEGG: nha:Nham_3646 inner-membrane translocator
YP_995694.1	PFAM: inner-membrane translocator; KEGG: rpd:RPD_1849 inner-membrane translocator
YP_995695.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr2925 amino acid ABC transporter ATP-binding protein
YP_995696.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0359 ABC transporter related
YP_995697.1	PFAM: Transketolase domain protein; KEGG: psp:PSPPH_1256 transketolase, N-terminal subunit, putative
YP_995698.1	PFAM: Transketolase, central region; Transketolase domain protein; KEGG: rha:RHA1_ro03844 transketolase, C-terminal subunit
YP_995699.1	PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: reu:Reut_B4570 iron-containing alcohol dehydrogenase
YP_995700.1	PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: pol:Bpro_3342 short-chain dehydrogenase/reductase SDR
YP_995701.1	PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: eba:ebA4396 quinone oxidoreductase
YP_995702.1	SMART: regulatory proteins, IclR; KEGG: rme:Rmet_0840 transcriptional regulator, IclR family
YP_995703.1	PFAM: regulatory proteins, IclR; KEGG: rpc:RPC_3996 transcriptional regulator, IclR family
YP_995704.1	KEGG: rpe:RPE_4119 MaoC domain protein dehydratase
YP_995705.1	PFAM: MaoC domain protein dehydratase; KEGG: rpc:RPC_3994 MaoC-like dehydratase
YP_995706.1	PFAM: Uncharacterized protein UPF0065; KEGG: rpe:RPE_4117 uncharacterized protein UPF0065
YP_995707.1	PFAM: Appr-1-p processing domain protein; KEGG: ppu:PP_5129 hypothetical protein
YP_995708.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pol:Bpro_0229 glucose-methanol-choline oxidoreductase
YP_995709.1	PFAM: Aldose 1-epimerase; KEGG: bps:BPSS2067 aldose 1-epimerase
YP_995710.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bps:BPSS2068 short chain dehydrogenase
YP_995711.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bps:BPSS2069 ABC transporter, ATP-binding protein
YP_995712.1	PFAM: inner-membrane translocator; KEGG: bps:BPSS2070 branched-chain amino acid transport system permease
YP_995713.1	KEGG: bps:BPSS2071 putative simple sugar transport system substrate-binding protein
YP_995714.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bps:BPSS2072 mandelate racemase / muconate lactonizing enzyme
YP_995715.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bps:BPSS2073 GntR family regulator protein
YP_995716.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bps:BPSS2074 senescence marker protein-30 (SMP-30) family protein
YP_995717.1	PFAM: protein of unknown function DUF140; KEGG: rfr:Rfer_3917 protein of unknown function DUF140
YP_995718.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3916 ABC transporter related
YP_995719.1	PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0232 mammalian cell entry related
YP_995720.1	KEGG: pol:Bpro_0233 putative lipoprotein
YP_995721.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: psp:PSPPH_5197 permease of the drug/metabolite transporter
YP_995722.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_995723.1	TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcb:XC_4240 benzoate transporter
YP_995724.1	PFAM: MOFRL domain protein; KEGG: pol:Bpro_1434 hydroxypyruvate reductase
YP_995725.1	TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_3710 sigma 28 (flagella/sporulation)
YP_995726.1	PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; KEGG: rfr:Rfer_3708 GTP-binding signal recognition particle SRP54, G-domain
YP_995727.1	TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: rfr:Rfer_3707 flagellar biosynthesis protein FlhA
YP_995728.1	PFAM: type III secretion exporter; KEGG: rfr:Rfer_3706 type III secretion exporter
YP_995729.1	PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_0186 major facilitator superfamily MFS_1
YP_995730.1	PFAM: sulfatase; KEGG: bam:Bamb_3271 sulfatase
YP_995731.1	KEGG: rha:RHA1_ro09044 ABC peptide transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_995732.1	KEGG: rha:RHA1_ro09045 ABC peptide transporter, ATP-binding component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_995733.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09046 ABC peptide transporter, permease component
YP_995734.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09047 ABC peptide transporter, permease component
YP_995735.1	PFAM: extracellular solute-binding protein, family 5; KEGG: sit:TM1040_2686 extracellular solute-binding protein, family 5
YP_995736.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_995737.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C1363 putative dehydrogenase
YP_995738.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: ppr:PBPRA0461 putative xylosidase
YP_995739.1	PFAM: glycoside hydrolase, family 5; KEGG: dge:Dgeo_2693 glycoside hydrolase, family 5
YP_995740.1	PFAM: extracellular solute-binding protein, family 1; KEGG: dge:Dgeo_2696 extracellular solute-binding protein, family 1
YP_995741.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_2695 binding-protein-dependent transport systems inner membrane component
YP_995742.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_2694 binding-protein-dependent transport systems inner membrane component
YP_995743.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_4930 ABC transporter related
YP_995744.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: dge:Dgeo_2697 transcriptional regulator, LacI family
YP_995745.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_995746.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_995747.1	KEGG: pol:Bpro_1293 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase
YP_995748.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_995749.1	KEGG: rfr:Rfer_1658 putative outer membrane lipoprotein
YP_995750.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1296 tetratricopeptide TPR_4
YP_995751.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_995753.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_2430 short-chain dehydrogenase/reductase SDR
YP_995754.1	PFAM: major facilitator superfamily MFS_1; KEGG: pau:PA14_20900 putative MFS transporter
YP_995755.1	PFAM: FAD linked oxidase domain protein; KEGG: plu:plu0950 hypothetical protein
YP_995756.1	PFAM: regulatory protein, TetR; KEGG: plu:plu0949 hypothetical protein
YP_995758.1	PFAM: regulatory protein GntR, HTH; protein of unknown function UPF0074; GntR domain protein; KEGG: rha:RHA1_ro05293 transcriptional regulator
YP_995759.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_995760.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_995761.1	TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: xcv:XCV4102 arginase
YP_995762.1	KEGG: bch:Bcen2424_0139 conserved hypothetical protein
YP_995763.1	catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate
YP_995764.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3217 binding-protein-dependent transport systems inner membrane component
YP_995765.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_3218 ABC transporter related
YP_995766.1	PFAM: extracellular solute-binding protein, family 1; KEGG: reu:Reut_B5874 extracellular solute-binding protein, family 1
YP_995767.1	KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_995768.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B1906 probable extra-cytoplasmic solute receptor
YP_995769.1	KEGG: rso:RSp0222 probable vanillate O-demethylase oxygenase subunit oxidoreductase protein
YP_995770.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_995771.1	TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: pol:Bpro_3046 bacterioferritin
YP_995772.1	KEGG: btk:BT9727_3378 hypothetical protein
YP_995773.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_995774.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_995775.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_995776.1	PFAM: ribosomal protein S6; KEGG: rfr:Rfer_2193 ribosomal protein S6
YP_995777.1	PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: rfr:Rfer_2194 putative primosomal replication protein
YP_995778.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_995779.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_995780.1	KEGG: rfr:Rfer_2580 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase
YP_995781.1	KEGG: nmu:Nmul_A1081 hypothetical protein
YP_995782.1	PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: pol:Bpro_2186 PhoH-like protein
YP_995783.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_2187 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_995784.1	KEGG: rfr:Rfer_0611 hypothetical protein
YP_995785.1	KEGG: pol:Bpro_0444 hypothetical protein
YP_995786.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_0446 fumarylacetoacetate (FAA) hydrolase
YP_995787.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rle:pRL120149 putative GntR family transcriptional regulator
YP_995788.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL120147 putative ATP-binding component of ABC transporter
YP_995789.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120146 putative permease component of ABC transporter
YP_995790.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120145 putative permease component of ABC transporter
YP_995791.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rle:pRL120143 putative short-chain dehydrogenase/reductase
YP_995792.1	KEGG: rle:pRL120142 putative substrate-binding component of ABC transporter
YP_995793.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rle:pRL120141 putative ATP-binding component of ABC transporter
YP_995794.1	PFAM: polysaccharide deacetylase; KEGG: rle:pRL120140 putative imidase
YP_995795.1	KEGG: rle:pRL120139 hypothetical protein
YP_995796.1	PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rle:pRL120138 putative CobW family cobalimin synthesis protein
YP_995797.1	KEGG: rle:pRL120137 hypothetical protein
YP_995798.1	KEGG: pol:Bpro_2521 glycine cleavage T protein (aminomethyl transferase)
YP_995799.1	PFAM: aminodeoxychorismate lyase; KEGG: rfr:Rfer_2254 aminodeoxychorismate lyase
YP_995800.1	PFAM: thymidylate kinase; KEGG: rfr:Rfer_2255 thymidylate kinase
YP_995801.1	KEGG: rfr:Rfer_2256 DNA-directed DNA polymerase
YP_995802.1	PFAM: type IV pilus assembly PilZ; KEGG: rfr:Rfer_2257 type IV pilus assembly PilZ
YP_995803.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: rfr:Rfer_2258 TatD-related deoxyribonuclease
YP_995804.1	PFAM: Ankyrin; KEGG: pol:Bpro_2515 ankyrin
YP_995805.1	KEGG: pol:Bpro_1979 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase
YP_995806.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_995807.1	TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; KEGG: rfr:Rfer_2093 OmpA/MotB
YP_995808.1	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: pol:Bpro_1986 tetratricopeptide TPR_2
YP_995809.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rfr:Rfer_2095 UBA/ThiF-type NAD/FAD binding protein
YP_995810.1	PFAM: restriction modification system DNA specificity domain; KEGG: ecs:ECs5306 type I restriction-modification enzyme S subunit
YP_995811.1	PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: shm:Shewmr7_2863 N-6 DNA methylase
YP_995813.1	PFAM: type III restriction enzyme, res subunit; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; KEGG: noc:Noc_3028 type I restriction enzyme, R subunit
YP_995814.1	Required for efficient pilin antigenic variation
YP_995816.1	PFAM: Heavy metal transport/detoxification protein; KEGG: bxe:Bxe_A3162 heavy metal binding protein
YP_995818.1	PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2418 MATE efflux family protein
YP_995820.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_995821.1	PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3725 NUDIX hydrolase
YP_995822.1	PFAM: SirA family protein; KEGG: rfr:Rfer_2377 SirA-like
YP_995823.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB1024 LysR-family transcriptional regulator
YP_995824.1	PFAM: sulfatase; KEGG: bbr:BB1025 probable sulfatase
YP_995825.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1026 hypothetical protein
YP_995826.1	PFAM: regulatory protein, TetR; KEGG: rle:RL3218 putative TetR family transcriptional regulator
YP_995827.1	PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mll3464 similar to antibiotic resistance protein
YP_995828.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_3723 UTP-glucose-1-phosphate uridylyltransferase
YP_995829.1	TIGRFAM: valyl-tRNA synthetase; KEGG: rfr:Rfer_2376 valyl-tRNA synthetase
YP_995830.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_3717 glyoxalase/bleomycin resistance protein/dioxygenase
YP_995831.1	PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein
YP_995832.1	PFAM: protein of unknown function DUF513, hemX; KEGG: rfr:Rfer_1717 protein of unknown function DUF513, HemX
YP_995833.1	KEGG: rfr:Rfer_1716 uroporphyrinogen III synthase
YP_995834.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_995835.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_995836.1	PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: pol:Bpro_2537 RNA binding S1
YP_995837.1	PFAM: HDOD; KEGG: rfr:Rfer_1469 putative signal transduction protein
YP_995838.1	PFAM: proline racemase; KEGG: pau:PA14_47840 putative proline racemase
YP_995839.1	PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_2810 extracellular ligand-binding receptor
YP_995840.1	PFAM: dihydrodipicolinate synthetase; KEGG: bxe:Bxe_B0873 putative dihydrodipicolinate synthase
YP_995841.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_995842.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_995843.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_995844.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_995845.1	catalyzes the phosphorylation of NAD to NADP
YP_995846.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rfr:Rfer_1652 DNA repair protein RecN
YP_995847.1	PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: pol:Bpro_1300 uncharacterised P-loop ATPase protein UPF0042
YP_995848.1	TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: pol:Bpro_1299 A/G-specific adenine glycosylase
YP_995849.1	KEGG: pau:PA14_69740 putative MFS transporter
YP_995850.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_995851.1	KEGG: pae:PA5282 probable major facilitator superfamily (MFS) transporter
YP_995852.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_0024 heavy metal translocating P-type ATPase
YP_995853.1	KEGG: rso:RSc1155 probable methyl-accepting chemotaxis transducer transmembrane protein
YP_995854.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_995855.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_B3075 GCN5-related N-acetyltransferase
YP_995856.1	PFAM: NADPH-dependent FMN reductase; KEGG: pol:Bpro_0072 NADPH-dependent FMN reductase
YP_995857.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_995858.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_995859.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_0075 lysine exporter protein (LysE/YggA)
YP_995860.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0076 cobyrinic acid a,c-diamide synthase
YP_995861.1	PFAM: protein of unknown function DUF1234; KEGG: pol:Bpro_0077 protein of unknown function DUF1234
YP_995862.1	TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: pol:Bpro_0078 ParB-like partition proteins
YP_995863.1	PFAM: SmpA/OmlA domain protein; KEGG: rfr:Rfer_0754 SmpA/OmlA
YP_995864.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_995865.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_995866.1	PFAM: Rare lipoprotein B; KEGG: rfr:Rfer_0759 rare lipoprotein B
YP_995867.1	PFAM: Pyrrolo-quinoline quinone; KEGG: rfr:Rfer_2663 putative type-4 fimbrial biogenesis PilY1-related signal peptide protein
YP_995868.1	KEGG: eba:ebA5932 transposase
YP_995869.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_995870.1	PFAM: Uncharacterized protein UPF0065; KEGG: bpa:BPP4092 hypothetical protein
YP_995871.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: bbr:BB4562 hypothetical protein
YP_995872.1	KEGG: pol:Bpro_0907 hypothetical protein
YP_995873.1	PFAM: chromosome segregation and condensation protein ScpA; KEGG: rfr:Rfer_3030 chromosome segregation and condensation protein ScpA
YP_995874.1	KEGG: pol:Bpro_0905 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase
YP_995875.1	KEGG: pol:Bpro_1494 hypothetical protein
YP_995877.1	catalyzes the formation of inosine from adenosine
YP_995878.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rfr:Rfer_3134 mandelate racemase/muconate lactonizing enzyme
YP_995879.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rfr:Rfer_3133 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
YP_995880.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bur:Bcep18194_B0626 ABC sugar transporter, periplasmic ligand binding protein
YP_995881.1	PFAM: inner-membrane translocator; KEGG: bur:Bcep18194_B0625 ABC sugar transporter, inner membrane subunit
YP_995882.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_B0624 ABC sugar transporter, ATPase subunit
YP_995883.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_3128 short-chain dehydrogenase/reductase SDR
YP_995884.1	PFAM: regulatory proteins, IclR; KEGG: bte:BTH_II1611 transcriptional regulator, IclR family
YP_995885.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin; KEGG: rso:RSp0246 probable alkyl hydroperoxide reductase (subunit F) oxidoreductase protein
YP_995886.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pau:PA14_01710 alkyl hydroperoxide reductase subunit C
YP_995887.1	KEGG: bte:BTH_II0081 transposase subunit
YP_995889.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_3219 transcriptional regulator, GntR family
YP_995890.1	TIGRFAM: phosphonoacetate hydrolase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pol:Bpro_3220 phosphonoacetate hydrolase
YP_995891.1	PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_3221 aldehyde dehydrogenase
YP_995892.1	KEGG: bch:Bcen2424_5294 HD phosphohydrolase-like protein
YP_995893.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_4689 protein of unknown function DUF6, transmembrane
YP_995895.1	PFAM: protein of unknown function DUF1177; KEGG: bcl:ABC0582 hypothetical protein
YP_995896.1	PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: reh:H16_B0137 conserved hypothetical membrane protein
YP_995897.1	KEGG: rso:RS03927 hypothetical protein
YP_995898.1	PFAM: FAD dependent oxidoreductase; KEGG: bpe:BP3677 hypothetical protein
YP_995899.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB0091 ABC transporter ATP-binding protein
YP_995900.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0090 ABC transport system permease protein
YP_995901.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bbr:BB0089 periplasmic solute-binding protein
YP_995902.1	PFAM: flagellar protein FliS; KEGG: rfr:Rfer_0633 flagellar protein FliS
YP_995903.1	KEGG: rfr:Rfer_0634 flagellar protein FliT
YP_995904.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rfr:Rfer_0549 flagellar hook-basal body complex protein
YP_995905.1	TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: rfr:Rfer_0550 flagellar M-ring protein FliF
YP_995906.1	PFAM: flagellar motor switch protein FliG; KEGG: rfr:Rfer_0551 flagellar motor switch protein FliG
YP_995907.1	PFAM: flagellar assembly protein FliH; KEGG: rfr:Rfer_0552 flagellar assembly protein FliH
YP_995908.1	KEGG: rfr:Rfer_0553 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase
YP_995909.1	TIGRFAM: flagellar export protein FliJ; KEGG: rfr:Rfer_0554 flagellar export FliJ
YP_995910.1	KEGG: rfr:Rfer_0555 flagellar hook-length control protein
YP_995911.1	PFAM: flagellar basal body-associated protein FliL; KEGG: rfr:Rfer_0556 flagellar basal body-associated protein FliL
YP_995912.1	PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: rfr:Rfer_0557 flagellar motor switch protein FliM
YP_995913.1	TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rfr:Rfer_0558 flagellar motor switch FliN
YP_995914.1	KEGG: rfr:Rfer_0559 hypothetical protein
YP_995915.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: rfr:Rfer_0561 flagellar biosynthetic protein FliQ
YP_995916.1	TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: rfr:Rfer_0562 flagellar biosynthetic protein FliR
YP_995917.1	PFAM: PilT protein domain protein; KEGG: bur:Bcep18194_A3320 PilT protein-like
YP_995918.1	KEGG: bur:Bcep18194_A3319 SpoVT/AbrB-like protein
YP_995919.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5359 uncharacterized protein UPF0065
YP_995920.1	KEGG: pen:PSEEN0746 hypothetical protein
YP_995922.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_5361 enoyl-CoA hydratase/isomerase
YP_995923.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ttj:TTHA1144 acetyl-coenzyme A dehydrogenase, medium chain
YP_995924.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: gka:GK2780 acyl-CoA dehydrogenase
YP_995925.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_5362 L-carnitine dehydratase/bile acid-inducible protein F
YP_995926.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B0912 probable extra-cytoplasmic solute receptor
YP_995927.1	KEGG: nar:Saro_0819 aldose 1-epimerase
YP_995928.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3104 galactarate dehydratase
YP_995930.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_3413 enoyl-CoA hydratase/isomerase
YP_995931.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B2533 probable extra-cytoplasmic solute receptor
YP_995933.1	TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: rfr:Rfer_3557 ABC-2 type transporter, NodJ family
YP_995934.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3558 ABC transporter related
YP_995935.1	KEGG: rfr:Rfer_2008 hypothetical protein
YP_995936.1	TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_2677 GreA/GreB family elongation factor
YP_995937.1	TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: pol:Bpro_2678 carbamoyl-phosphate synthase, large subunit
YP_995938.1	TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: rfr:Rfer_2004 carbamoyl-phosphate synthase, small subunit
YP_995939.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_995940.1	TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: pol:Bpro_1587 peptidase M1, alanyl aminopeptidase
YP_995941.1	TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: bch:Bcen2424_2117 peptide chain release factor 2
YP_995942.1	KEGG: bja:blr2321 hypothetical protein
YP_995943.1	PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_2699 alpha/beta hydrolase
YP_995944.1	KEGG: bte:BTH_II1154 CoA transferase, CaiB/BaiF family
YP_995945.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_995946.1	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_0650 DEAD/DEAH box helicase-like
YP_995947.1	PFAM: YaeQ family protein; KEGG: rfr:Rfer_4048 YaeQ
YP_995948.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_995949.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rfr:Rfer_4050 glutathione S-transferase-like
YP_995950.1	KEGG: pol:Bpro_1209 hypothetical protein
YP_995952.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_995953.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_1937 transcriptional regulator, Crp/Fnr family
YP_995954.1	KEGG: rfr:Rfer_1936 hypothetical protein
YP_995955.1	KEGG: rfr:Rfer_1935 hypothetical protein
YP_995956.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding
YP_995957.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: pol:Bpro_4302 cytochrome c oxidase, cbb3-type, subunit III
YP_995958.1	PFAM: Cbb3-type cytochrome oxidase component; KEGG: pol:Bpro_4303 Cbb3-type cytochrome oxidase component
YP_995959.1	CcoO; FixO
YP_995960.1	CcoN; FixN
YP_995961.1	TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rfr:Rfer_1929 cytochrome oxidase maturation protein, cbb3-type
YP_995962.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_1927 heavy metal translocating P-type ATPase
YP_995963.1	PFAM: UspA domain protein; KEGG: rfr:Rfer_1926 UspA
YP_995964.1	TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: sde:Sde_2760 putative transcriptional regulator
YP_995965.1	KEGG: ter:Tery_4678 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase
YP_995966.1	KEGG: rha:RHA1_ro04148 probable very short patch repair protein
YP_995967.1	PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sfu:Sfum_3846 helicase domain protein
YP_995968.1	KEGG: gox:GOX1742 hypothetical protein
YP_995969.1	KEGG: sfu:Sfum_3847 hypothetical protein
YP_995970.1	KEGG: gsu:GSU1362 hypothetical protein
YP_995971.1	KEGG: gsu:GSU1363 RNA-directed DNA polymerase
YP_995972.1	KEGG: sfu:Sfum_3853 hypothetical protein
YP_995973.1	PFAM: protein of unknown function DUF1016; KEGG: ava:Ava_4169 protein of unknown function DUF1016
YP_995974.1	PFAM: helicase domain protein; KEGG: sfu:Sfum_3850 helicase domain protein
YP_995975.1	KEGG: sfu:Sfum_3851 hypothetical protein
YP_995976.1	KEGG: bch:Bcen2424_5294 HD phosphohydrolase-like protein
YP_995977.1	KEGG: rfr:Rfer_1679 hypothetical protein
YP_995978.1	PFAM: HpcH/HpaI aldolase; KEGG: rme:Rmet_1633 HpcH/HpaI aldolase
YP_995979.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1999 hypothetical protein
YP_995981.1	PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: atc:AGR_L_3286 tagatose 6-phosphate kinase
YP_995982.1	PFAM: Methyltransferase type 12; KEGG: bur:Bcep18194_A4878 ribosomal RNA adenine methylase transferase
YP_995983.1	PFAM: peptidase U32; KEGG: cvi:CV1955 probable protease
YP_995984.1	PFAM: homocysteine S-methyltransferase; KEGG: rfr:Rfer_0460 5-methyltetrahydrofolate--homocysteine S-methyltransferase
YP_995985.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_B5436 regulatory protein, LysR:LysR, substrate-binding
YP_995986.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bbr:BB3131 probable acyl-CoA dehydrogenase
YP_995987.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A2597 probable extra-cytoplasmic solute receptor
YP_995988.1	KEGG: pol:Bpro_3173 hypothetical protein
YP_995989.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_995990.1	PFAM: NlpBDapX family lipoprotein; KEGG: rfr:Rfer_2096 NlpBDapX lipoprotein
YP_995991.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_4868 peptidase M20
YP_995992.1	KEGG: pen:PSEEN1326 hypothetical protein
YP_995993.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: mlo:mll2639 hypothetical protein
YP_995994.1	KEGG: psb:Psyr_2744 hypothetical protein
YP_995995.1	PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: psp:PSPPH_2416 pyridoxal-phosphate dependent enzyme family/ornithine cyclodeaminase family protein
YP_995996.1	PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: psb:Psyr_2745 pyridoxal-5'-phosphate-dependent enzyme, beta subunit:ornithine cyclodeaminase/mu-crystallin
YP_995998.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_995999.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_996000.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_996001.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_996002.1	putative metalloprotease
YP_996003.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_996004.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3901 ABC transporter related
YP_996005.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3902 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_996006.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3903 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_996007.1	PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_3904 extracellular solute-binding protein, family 3
YP_996008.1	PFAM: dienelactone hydrolase; KEGG: pol:Bpro_0241 carboxymethylenebutenolidase
YP_996009.1	PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: pol:Bpro_2343 protein of unknown function DUF752
YP_996010.1	PFAM: Fe(II) trafficking protein YggX; KEGG: rfr:Rfer_2102 Fe(II) trafficking protein YggX
YP_996011.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2345 thiosulphate-binding protein
YP_996012.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3957 acyl-CoA dehydrogenase-like
YP_996013.1	PFAM: regulatory protein, TetR; KEGG: pol:Bpro_3958 transcriptional regulator, TetR family
YP_996014.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_996015.1	PFAM: glycosyl transferase, family 4; KEGG: pol:Bpro_3998 glycosyl transferase, family 4
YP_996016.1	KEGG: net:Neut_0179 glycosyl transferase, family 2
YP_996017.1	KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB
YP_996018.1	TIGRFAM: CRISPR-associated protein, Csn1 family; KEGG: nha:Nham_4054 hypothetical protein
YP_996019.1	TIGRFAM: CRISPR-associated protein Cas1; KEGG: nwi:Nwi_0955 hypothetical protein
YP_996020.1	TIGRFAM: CRISPR-associated protein Cas2; KEGG: nwi:Nwi_0953 protein of unknown function DUF196
YP_996021.1	KEGG: pol:Bpro_0900 adenosylmethionine-8-amino-7-oxononanoate aminotransferase
YP_996022.1	PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: pol:Bpro_1495 6-pyruvoyl tetrahydropterin synthase and hypothetical protein
YP_996023.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sil:SPO0383 acyl carrier protein phosphodiesterase, putative
YP_996024.1	PFAM: dihydrodipicolinate synthetase; KEGG: pol:Bpro_3419 dihydrodipicolinate synthetase
YP_996025.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_3109 NAD-dependent epimerase/dehydratase
YP_996027.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_3526 ABC transporter related
YP_996028.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3527 binding-protein-dependent transport systems inner membrane component
YP_996029.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3528 binding-protein-dependent transport systems inner membrane component
YP_996030.1	PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_3529 extracellular solute-binding protein, family 1
YP_996031.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_996032.1	KEGG: rfr:Rfer_2288 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase
YP_996033.1	KEGG: bur:Bcep18194_B1948 N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20
YP_996034.1	KEGG: bbr:BB2815 putative mandelate racemase
YP_996035.1	PFAM: aminotransferase class-III; KEGG: ace:Acel_1287 aminotransferase class-III
YP_996036.1	PFAM: aldehyde dehydrogenase; KEGG: mes:Meso_0804 aldehyde dehydrogenase
YP_996037.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_0464 general substrate transporter
YP_996038.1	TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_4583 glutamate--cysteine ligase GshA
YP_996039.1	PFAM: K+ potassium transporter; KEGG: pol:Bpro_4582 K+ potassium transporter
YP_996040.1	PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pol:Bpro_0250 serine-type D-Ala-D-Ala carboxypeptidase
YP_996041.1	KEGG: reu:Reut_C5947 regulatory protein GntR, HTH:GntR, C-terminal
YP_996042.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_4100 enoyl-CoA hydratase/isomerase
YP_996043.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4101 uncharacterized protein UPF0065
YP_996044.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_C5950 L-carnitine dehydratase/bile acid-inducible protein F
YP_996045.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_996046.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_996047.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_996048.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_996049.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_996050.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_996051.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_996052.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_996053.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_996054.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_996055.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_996056.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_996057.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_996058.1	one of the stabilizing components for the large ribosomal subunit
YP_996059.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_996060.1	PFAM: Redoxin domain protein; KEGG: rfr:Rfer_3785 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_996061.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_3784 GCN5-related N-acetyltransferase
YP_996062.1	PFAM: cytochrome B561; KEGG: pol:Bpro_0268 cytochrome b561
YP_996063.1	PFAM: cytochrome c, class II; KEGG: pol:Bpro_0269 cytochrome c, class II
YP_996064.1	PFAM: Redoxin domain protein; KEGG: pol:Bpro_0270 putative transmembrane protein
YP_996065.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0296 major facilitator superfamily MFS_1
YP_996066.1	PFAM: PTS system fructose subfamily IIA component; KEGG: pol:Bpro_0297 PTS system fructose subfamily IIA component
YP_996067.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pol:Bpro_0298 HPrNtr
YP_996068.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: pol:Bpro_0299 phosphoenolpyruvate-protein phosphotransferase
YP_996069.1	PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5532 transposase, IS4
YP_996070.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mtc:MT3167 transcriptional regulator, AraC family
YP_996071.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rha:RHA1_ro03771 possible 3-hydroxybutyryl-CoA dehydrogenase
YP_996072.1	catalyzes the formation of L-tryptophan from indole and L-serine
YP_996073.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rfr:Rfer_0577 multi-sensor signal transduction histidine kinase
YP_996074.1	TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0578 two component transcriptional regulator, winged helix family
YP_996075.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pol:Bpro_2256 phosphate uptake regulator, PhoU
YP_996076.1	KEGG: bpe:BP1068 phosphate transport ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_996077.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tbd:Tbd_1138 phosphate transport system permease protein 2
YP_996078.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tbd:Tbd_1137 phosphate ABC transporter, permease protein PstC
YP_996079.1	TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: bpe:BP1071 phosphate-binding periplasmic protein precursor
YP_996080.1	PFAM: Ppx/GppA phosphatase; KEGG: pol:Bpro_2249 Ppx/GppA phosphatase
YP_996081.1	TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_2018 phosphohistidine phosphatase, SixA
YP_996082.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_996083.1	KEGG: pol:Bpro_2116 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_996084.1	KEGG: pol:Bpro_2115 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_996085.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2114 binding-protein-dependent transport systems inner membrane component
YP_996086.1	PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_2113 extracellular solute-binding protein, family 5
YP_996087.1	KEGG: pol:Bpro_0749 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_996088.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2112 binding-protein-dependent transport systems inner membrane component
YP_996089.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bbr:BB4028 putative binding-protein-dependent transport protein (periplasmic)
YP_996090.1	PFAM: porin, Gram-negative type; KEGG: pol:Bpro_4383 putative porin precursor transmembrane protein
YP_996091.1	KEGG: pol:Bpro_0745 putative ubiquinone biosynthesis protein
YP_996092.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rfr:Rfer_1283 glycerophosphodiester phosphodiesterase
YP_996093.1	PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pfl:PFL_5911 D-3-phosphoglycerate dehydrogenase
YP_996094.1	KEGG: tfu:Tfu_0724 putative type II DNA modification enzyme
YP_996095.1	PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0858 FAD linked oxidase-like
YP_996096.1	PFAM: extracellular solute-binding protein, family 3; KEGG: bam:Bamb_3990 extracellular solute-binding protein, family 3
YP_996097.1	KEGG: bam:Bamb_3989 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter related; SMART: AAA ATPase
YP_996098.1	PFAM: regulatory protein GntR, HTH; KEGG: bam:Bamb_3986 transcriptional regulator, GntR family
YP_996099.1	KEGG: bam:Bamb_3985 hypothetical protein
YP_996100.1	PFAM: protein of unknown function DUF971; KEGG: rfr:Rfer_1290 protein of unknown function DUF971
YP_996101.1	KEGG: rme:Rmet_4376 hypothetical protein
YP_996102.1	PFAM: 4'-phosphopantetheinyl transferase; KEGG: rme:Rmet_4393 4'-phosphopantetheinyl transferase
YP_996103.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1291 ubiquinone/menaquinone biosynthesis methyltransferases
YP_996104.1	PFAM: import inner membrane translocase, subunit Tim44; KEGG: rfr:Rfer_1292 import inner membrane translocase, subunit Tim44
YP_996105.1	KEGG: rfr:Rfer_1293 hypothetical protein
YP_996106.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_996108.1	KEGG: cdi:DIP1646 hypothetical protein
YP_996109.1	TIGRFAM: putative regulatory protein, FmdB family; KEGG: bur:Bcep18194_A6054 hypothetical protein
YP_996110.1	PFAM: protein of unknown function DUF502; KEGG: pol:Bpro_0865 protein of unknown function DUF502
YP_996111.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_996112.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rfr:Rfer_1299 endonuclease/exonuclease/phosphatase
YP_996113.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_0868 phospholipase D/transphosphatidylase
YP_996114.1	PFAM: GTP cyclohydrolase I; KEGG: pol:Bpro_0869 GTP cyclohydrolase I
YP_996115.1	KEGG: rfr:Rfer_1302 BLUF
YP_996116.1	KEGG: rfr:Rfer_3839 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_996117.1	PFAM: carbonic anhydrase; KEGG: rfr:Rfer_3841 carbonate dehydratase
YP_996118.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_4190 acyl-CoA dehydrogenase-like
YP_996119.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_0729 cation diffusion facilitator family transporter
YP_996120.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_996121.1	Catalyzes the deamination of guanine
YP_996122.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_996123.1	catalyzes the formation of L-proline from L-ornithine
YP_996124.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_1516 DEAD/DEAH box helicase-like
YP_996125.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_996126.1	SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: bpm:BURPS1710b_A0569 HNS-like transcription regulator protein
YP_996127.1	TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: reh:H16_A2638 aconitate hydratase
YP_996128.1	KEGG: rfr:Rfer_2893 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_996129.1	KEGG: rfr:Rfer_2893 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein
YP_996130.1	PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_3591 salicylate 1-monooxygenase
YP_996131.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_996132.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1999 hypothetical protein
YP_996133.1	KEGG: pol:Bpro_2147 amidohydrolase 2
YP_996134.1	PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: bja:blr2741 3-isopropylmalate dehydrogenase
YP_996136.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB3965 hypothetical protein
YP_996137.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reh:H16_B0336 transcriptional regulator, LysR-family
YP_996138.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: rfr:Rfer_1711 histidine kinase internal protein
YP_996139.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_996141.1	KEGG: mmu:676235 hypothetical protein LOC676235
YP_996142.1	TIGRFAM: outer membrane protein; KEGG: she:Shewmr4_0384 putative outer membrane adhesin like protein
YP_996143.1	KEGG: csa:Csal_0326 hypothetical protein
YP_996144.1	PFAM: alpha/beta hydrolase fold; Thioesterase; KEGG: csa:Csal_0327 alpha/beta hydrolase
YP_996145.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_707 high-affinity branched-chain amino acid transport ATP-binding protein BraF
YP_996146.1	PFAM: inner-membrane translocator; KEGG: rso:RSc2247 probable transmembrane ABC transporter protein
YP_996147.1	PFAM: inner-membrane translocator; KEGG: sme:SMb20787 putative branched-chain amino acid uptake ABC transporter permease protein
YP_996148.1	PFAM: Extracellular ligand-binding receptor; KEGG: ret:RHE_CH03445 putative branched-chain amino acid ABC transporter, substrate-binding protein
YP_996149.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_0331 transcriptional regulator, LysR family
YP_996150.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_3385 oxidoreductase FAD-binding region
YP_996151.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: rpb:RPB_1908 Rieske (2Fe-2S) protein
YP_996152.1	extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway
YP_996153.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: csa:Csal_0336 Rieske (2Fe-2S) protein
YP_996154.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: csa:Csal_0337 ferredoxin
YP_996155.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: xcb:XC_3428 transcriptional regulator GntR family
YP_996156.1	PFAM: porin, Gram-negative type; KEGG: pol:Bpro_3117 porin, gram-negative type
YP_996158.1	KEGG: xfa:XF1418 hypothetical protein
YP_996159.1	PFAM: transposase, IS4 family protein; KEGG: xom:XOO_1836 ISXoo5 transposase
YP_996162.1	PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: pol:Bpro_1245 cytochrome c oxidase, subunit II
YP_996163.1	PFAM: cytochrome c oxidase, subunit I; KEGG: pol:Bpro_1246 cytochrome-c oxidase
YP_996164.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_996165.1	PFAM: cytochrome c oxidase, subunit III; KEGG: pol:Bpro_1249 cytochrome c oxidase, subunit III
YP_996166.1	KEGG: pol:Bpro_1250 putative transmembrane protein
YP_996167.1	KEGG: rfr:Rfer_1686 hypothetical protein
YP_996168.1	KEGG: rfr:Rfer_1687 hypothetical protein
YP_996169.1	PFAM: cytochrome oxidase assembly; KEGG: rfr:Rfer_1688 cytochrome oxidase assembly
YP_996170.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_996171.1	PFAM: electron transport protein SCO1/SenC; KEGG: rfr:Rfer_1690 electron transport protein SCO1/SenC
YP_996172.1	PFAM: Urease accessory protein UreD; KEGG: pol:Bpro_1414 urease accessory protein UreD
YP_996173.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_0495 transcriptional regulator, LacI family
YP_996175.1	PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_3529 extracellular solute-binding protein, family 1
YP_996176.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_996177.1	KEGG: sus:Acid_5572 N-acetylglucosamine-6-phosphate deacetylase
YP_996178.1	PFAM: oxidoreductase domain protein; KEGG: stm:STM2753 putative dehydrogenase
YP_996179.1	PFAM: peptidase S45, penicillin amidase; KEGG: bmb:BruAb2_1029 penicillin amidase family protein
YP_996180.1	KEGG: rso:RSc3173 putative bacteriophage-related protein
YP_996181.1	KEGG: mag:amb2804 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase
YP_996182.1	PFAM: Integrase, catalytic region; KEGG: rme:Rmet_1301 integrase, catalytic region
YP_996183.1	KEGG: pol:Bpro_3196 putative transposase
YP_996184.1	PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rru:Rru_B0010 resolvase
YP_996185.1	KEGG: psp:PSPPH_B0052 hypothetical protein
YP_996186.1	KEGG: psp:PSPPH_B0053 hypothetical protein
YP_996188.1	PFAM: protein of unknown function DUF86; KEGG: neu:NE1074 hypothetical protein
YP_996189.1	PFAM: DNA polymerase, beta domain protein region; KEGG: neu:NE1075 DNA polymerase beta-like domain
YP_996190.1	KEGG: xfa:XF1656 hypothetical protein
YP_996191.1	KEGG: noc:Noc_A0020 hypothetical protein
YP_996192.1	PFAM: transposase, IS4 family protein; KEGG: eba:ebA6355 transposase, IS4 family
YP_996194.1	SohA; PrlF; involved in protein secretion; when overproduced or mutated, it induces growth defect and increased export of a reporter protein; a PrlF mutation induces the activity of the Lon protease, and a Lon-deficient strain suppresses the phenotype conferred by the PrlF mutation
YP_996195.1	KEGG: neu:NE1999 hypothetical protein
YP_996196.1	KEGG: net:Neut_1256 ISRm2011-2 transposase protein
YP_996198.1	KEGG: hpj:jhp0933 hypothetical protein
YP_996199.1	KEGG: nme:NMB1760 hypothetical protein
YP_996203.1	PFAM: Integrase, catalytic region; KEGG: rme:Rmet_4152 integrase, catalytic region
YP_996204.1	KEGG: pol:Bpro_2700 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein
YP_996205.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: rfr:Rfer_1984 protein of unknown function UPF0031
YP_996206.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: bxe:Bxe_B2128 putative 2-hydroxyacid dehydrogenase
YP_996207.1	KEGG: pol:Bpro_3971 hypothetical protein
YP_996208.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5589 hypothetical protein
YP_996209.1	PFAM: protein of unknown function DUF1185; KEGG: bxe:Bxe_B2129 hypothetical protein
YP_996210.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: bxe:Bxe_B2130 3-hydroxyisobutyrate dehydrogenase
YP_996211.1	KEGG: rpc:RPC_2713 dimethylmenaquinone methyltransferase
YP_996213.1	KEGG: net:Neut_1256 ISRm2011-2 transposase protein
YP_996214.1	KEGG: rpc:RPC_2713 dimethylmenaquinone methyltransferase
YP_996215.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_B2142 transcriptional regulator, LysR family
YP_996216.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_996217.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_996218.1	TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; elongation factor Ts; KEGG: rfr:Rfer_1990 translation elongation factor Ts
YP_996219.1	Catalyzes the phosphorylation of UMP to UDP
YP_996220.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_996221.1	KEGG: pol:Bpro_2691 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_996222.1	PFAM: phosphatidate cytidylyltransferase; KEGG: rfr:Rfer_1993 phosphatidate cytidylyltransferase
YP_996223.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_996224.1	TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: pol:Bpro_2688 peptidase M50, putative membrane-associated zinc metallopeptidase
YP_996225.1	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pol:Bpro_2687 surface antigen (D15)
YP_996226.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: pol:Bpro_2686 outer membrane chaperone Skp (OmpH)
YP_996227.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_996228.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_996229.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_996230.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_996231.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_996232.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_2680 tRNA/rRNA methyltransferase (SpoU)
YP_996233.1	TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: eca:ECA3684 hypothetical protein
YP_996234.1	TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: cvi:CV1752 hypothetical protein
YP_996235.1	TIGRFAM: CRISPR-associated protein, Csy2 family; KEGG: cvi:CV1753 hypothetical protein
YP_996236.1	TIGRFAM: CRISPR-associated protein, Csy1 family; KEGG: cvi:CV1754 hypothetical protein
YP_996237.1	TIGRFAM: CRISPR-associated helicase Cas3 family; KEGG: cvi:CV1755 hypothetical protein
YP_996238.1	TIGRFAM: CRISPR-associated protein Cas1; KEGG: cvi:CV1756 hypothetical protein
YP_996239.1	PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_0816 phosphoglycerate mutase
YP_996240.1	KEGG: pol:Bpro_4090 hypothetical protein
YP_996241.1	PFAM: PP-loop domain protein; KEGG: pol:Bpro_4089 PP-loop
YP_996242.1	PFAM: dihydroneopterin aldolase; KEGG: pol:Bpro_4088 dihydroneopterin aldolase
YP_996243.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_4087 short-chain dehydrogenase/reductase SDR
YP_996244.1	PFAM: protein of unknown function DUF185; KEGG: pol:Bpro_4086 protein of unknown function DUF185
YP_996245.1	KEGG: pol:Bpro_4085 hypothetical protein
YP_996246.1	KEGG: pol:Bpro_3915 HAD-superfamily hydrolase subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase
YP_996247.1	PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: rfr:Rfer_1090 metal dependent phosphohydrolase
YP_996248.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rfr:Rfer_1089 glutathione S-transferase-like
YP_996249.1	PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc03889 putative transport protein
YP_996250.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rfr:Rfer_1087 5-formyltetrahydrofolate cyclo-ligase
YP_996251.1	PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0652 lytic transglycosylase, catalytic
YP_996252.1	PFAM: photosystem I assembly BtpA; KEGG: atc:AGR_L_1705GM hypothetical protein
YP_996253.1	PFAM: PfkB domain protein; KEGG: mlo:mll7662 ribokinase
YP_996254.1	PFAM: protein of unknown function DUF1355; KEGG: psb:Psyr_0772 protein of unknown function DUF1355
YP_996255.1	PFAM: aryldialkylphosphatase; KEGG: psb:Psyr_0773 aryldialkylphosphatase
YP_996256.1	PFAM: inner-membrane translocator; KEGG: psb:Psyr_0774 inner-membrane translocator
YP_996257.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll7666 ABC transporter, ATP-binding protein
YP_996258.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rle:pRL90225 putative binding periplasmic protein of ABC transporter
YP_996259.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: psb:Psyr_0777 regulatory protein, LacI:periplasmic binding protein/LacI transcriptional regulator
YP_996260.1	KEGG: lpn:lpg2069 transposase Tn5
YP_996261.1	KEGG: pol:Bpro_3365 hypothetical protein
YP_996262.1	PFAM: Phosphoglycerate mutase; KEGG: rme:Rmet_0420 phosphoglycerate mutase
YP_996263.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_0280 Rieske (2Fe-2S) protein
YP_996264.1	TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_3356 UDP-N-acetylmuramate
YP_996265.1	KEGG: rfr:Rfer_3355 hypothetical protein
YP_996266.1	PFAM: Redoxin domain protein; KEGG: pol:Bpro_1098 thioredoxin family protein, putative
YP_996267.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pol:Bpro_1099 acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_996268.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rfr:Rfer_3352 acetyl-CoA carboxylase, biotin carboxylase
YP_996269.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_996270.1	KEGG: rfr:Rfer_3350 zinc finger/thioredoxin putative
YP_996271.1	PFAM: PfkB domain protein; KEGG: pol:Bpro_1103 PfkB
YP_996272.1	KEGG: mlo:mll7904 hypothetical protein
YP_996273.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_996274.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_996275.1	PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pol:Bpro_1109 negative regulator of AmpC, AmpD
YP_996276.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: pol:Bpro_1110 two component, sigma54 specific, transcriptional regulator, fis family
YP_996277.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1111 periplasmic sensor signal transduction histidine kinase
YP_996278.1	KEGG: bbr:BB0504 hypothetical protein
YP_996279.1	PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_1113 cytochrome c assembly protein
YP_996280.1	KEGG: pol:Bpro_1114 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase
YP_996281.1	KEGG: rfr:Rfer_2663 putative type-4 fimbrial biogenesis PilY1-related signal peptide protein
YP_996282.1	KEGG: pol:Bpro_0671 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase
YP_996283.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_1082 histidine kinase
YP_996284.1	PFAM: Integral membrane protein TerC; KEGG: rfr:Rfer_3943 integral membrane protein TerC
YP_996285.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1594 binding-protein-dependent transport systems inner membrane component
YP_996286.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_1595 ABC transporter related
YP_996287.1	PFAM: PilT protein domain protein; KEGG: rpe:RPE_1994 PilT protein domain protein
YP_996288.1	KEGG: reh:H16_B2007 possible virulence-associated protein
YP_996290.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_1147 phospholipid/glycerol acyltransferase
YP_996291.1	KEGG: pol:Bpro_1146 allantoinase
YP_996292.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_996293.1	PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_1144 phosphoribosyltransferase
YP_996294.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_996295.1	PFAM: protein of unknown function DUF179; KEGG: pol:Bpro_1142 protein of unknown function DUF179
YP_996296.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ppu:PP_3516 transcriptional regulator, AraC family
YP_996297.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: ppu:PP_3515 hydantoin utilization protein A
YP_996298.1	PFAM: Hydantoinase B/oxoprolinase; KEGG: ppu:PP_3514 hydantoin utilization protein B
YP_996299.1	PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: rde:RD1_0281 dehydrogenase, putative
YP_996300.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5440 hypothetical protein
YP_996301.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_996302.1	TIGRFAM: outer membrane protein; KEGG: pfo:Pfl_0160 glycosyl hydrolase, BNR repeat
YP_996305.1	PFAM: Endoribonuclease L-PSP; KEGG: nmu:Nmul_A2263 endoribonuclease L-PSP
YP_996306.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_996307.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: pol:Bpro_3968 malate/L-lactate dehydrogenase
YP_996308.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rde:RD1_3716 gluconolactonase, putative
YP_996309.1	KEGG: pfo:Pfl_3710 hypothetical protein
YP_996310.1	PFAM: inner-membrane translocator; KEGG: mlo:mll4201 ribose ABC transporter (permease)
YP_996311.1	PFAM: inner-membrane translocator; KEGG: sme:SMa0198 putative ABC transporter, permease
YP_996312.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll4203 sugar ABC transporter, ATP-binding protein
YP_996313.1	KEGG: atc:AGR_L_1638 putative simple sugar transport system substrate-binding protein
YP_996314.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3967 altronate dehydratase
YP_996315.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_3966 TRAP dicarboxylate transporter-DctM subunit
YP_996316.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_3965 tripartite ATP-independent periplasmic transporter, DctQ component
YP_996317.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_3964 TRAP dicarboxylate transporter, DctP subunit
YP_996318.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_3964 TRAP dicarboxylate transporter, DctP subunit
YP_996319.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_3963 GntR-like
YP_996320.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bbr:BB4035 putative oxidoreductase
YP_996321.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_4625 SUA5/YciO/YrdC/YwlC
YP_996322.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_996323.1	KEGG: pol:Bpro_4627 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_996324.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_4628 thioredoxin
YP_996325.1	PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: ppr:PBPRA2462 hypothetical protein
YP_996326.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_996327.1	PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1077 general substrate transporter:major facilitator superfamily MFS_1
YP_996328.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_3440 putative short chain dehydrogenase
YP_996329.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: rfr:Rfer_1637 dimethylmenaquinone methyltransferase
YP_996330.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_996331.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_996332.1	TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 12; KEGG: rfr:Rfer_1279 modification methylase, HemK family
YP_996333.1	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: rfr:Rfer_1276 glutaredoxin-related protein
YP_996334.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bam:Bamb_3094 AAA ATPase, central domain protein
YP_996335.1	KEGG: xft:PD0968 hypothetical protein
YP_996336.1	KEGG: xft:PD0967 hypothetical protein
YP_996337.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_0311 protein of unknown function DUF6, transmembrane
YP_996339.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1908 hypothetical protein
YP_996340.1	PFAM: NAD/NADP octopine/nopaline dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rde:RD1_0281 dehydrogenase, putative
YP_996342.1	PFAM: N-6 DNA methylase; KEGG: mfa:Mfla_1177 transcriptional regulator, XRE family
YP_996343.1	PFAM: restriction modification system DNA specificity domain; KEGG: mfa:Mfla_1176 restriction modification system DNA specificity domain
YP_996344.1	KEGG: spt:SPA3606 putative DNA-binding protein
YP_996345.1	KEGG: mfa:Mfla_1175 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like
YP_996346.1	PFAM: protein of unknown function DUF45; KEGG: mfa:Mfla_1174 protein of unknown function DUF45
YP_996347.1	KEGG: lpp:lpp0187 hypothetical protein
YP_996348.1	KEGG: aba:Acid345_1139 hydrolase (metallo-beta-lactamase superfamily)
YP_996351.1	PFAM: ferrochelatase; KEGG: rfr:Rfer_1545 ferrochelatase
YP_996352.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_2014 HAD-superfamily hydrolase subfamily IA, variant 3
YP_996353.1	KEGG: rfr:Rfer_0009 integral membrane protein
YP_996354.1	KEGG: rfr:Rfer_0008 hypothetical protein
YP_996355.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3927 twin-arginine translocation pathway signal
YP_996356.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3913 uncharacterized protein UPF0065
YP_996357.1	PFAM: HpcH/HpaI aldolase; KEGG: bxe:Bxe_C0830 citrate lyase
YP_996358.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B4151 L-carnitine dehydratase/bile acid-inducible protein F
YP_996359.1	PFAM: MaoC domain protein dehydratase; KEGG: bxe:Bxe_C0832 putative dehydratase
YP_996360.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reh:H16_B0356 acyl-CoA dehydrogenase
YP_996361.1	PFAM: MaoC domain protein dehydratase; KEGG: bxe:Bxe_C0834 putative dehydratase
YP_996362.1	PFAM: MmgE/PrpD family protein; KEGG: bxe:Bxe_B1004 putative MmgE/PRP family protein
YP_996364.1	KEGG: pol:Bpro_3862 hypothetical protein
YP_996365.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: pfl:PFL_2191 transcriptional regulator, GntR family
YP_996366.1	PFAM: Endoribonuclease L-PSP; KEGG: bxe:Bxe_B0276 putative aerobic 2-aminobenzoate
YP_996367.1	PFAM: thioesterase superfamily protein; KEGG: bxe:Bxe_B0277 putative 4-hydroxybenzoyl CoA thioesterase
YP_996368.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: abo:ABO_2026 anthranilate synthase, component II
YP_996369.1	PFAM: major facilitator superfamily MFS_1; KEGG: plu:plu3937 hypothetical protein
YP_996370.1	KEGG: afm:Afu6g03630 hypothetical protein
YP_996371.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pfl:PFL_2188 uncharacterized ACR
YP_996372.1	PFAM: DoxX family protein; KEGG: aba:Acid345_3719 DoxX
YP_996373.1	SMART: regulatory proteins, IclR; KEGG: aci:ACIAD1822 putative transcriptional regulator
YP_996374.1	KEGG: bxe:Bxe_C0229 hypothetical protein
YP_996375.1	PFAM: glucose-methanol-choline oxidoreductase; KEGG: rme:Rmet_2503 glucose-methanol-choline oxidoreductase
YP_996376.1	PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: pol:Bpro_3018 Mo-co oxidoreductase dimerisation domain
YP_996377.1	PFAM: cytochrome c, class I; KEGG: rfr:Rfer_4138 cytochrome c, class I
YP_996378.1	PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_0401 extracellular solute-binding protein, family 3
YP_996379.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0402 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_996380.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0403 ABC transporter related
YP_996381.1	KEGG: pol:Bpro_0404 conserved hypothetical protein; putative protein (DcaP-like)
YP_996382.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: dra:DR2393 hypothetical protein
YP_996383.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_0225 peptidoglycan glycosyltransferase
YP_996384.1	KEGG: pol:Bpro_0224 putative rod shape-determining MreD transmembrane protein
YP_996385.1	TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: pol:Bpro_0223 rod shape-determining protein MreC
YP_996386.1	functions in MreBCD complex in some organisms
YP_996387.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; KEGG: rfr:Rfer_3924 glutamyl-tRNA(Gln) amidotransferase, C subunit
YP_996388.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_996389.1	KEGG: rru:Rru_A2995 hypothetical protein
YP_996390.1	KEGG: rru:Rru_A2994 hypothetical protein
YP_996391.1	KEGG: rru:Rru_A2993 hypothetical protein
YP_996392.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB N-terminal region; GatB, central domain protein; KEGG: rfr:Rfer_3926 glutamyl-tRNA(Gln) amidotransferase, B subunit
YP_996393.1	KEGG: pol:Bpro_0218 hypothetical protein
YP_996394.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_996395.1	KEGG: rfr:Rfer_3929 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_996396.1	PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: gme:Gmet_0861 type II secretion system protein E
YP_996397.1	catalyzes the formation of selenophosphate from selenide and ATP
YP_996398.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_996399.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_996400.1	PFAM: peptidase M50; KEGG: rfr:Rfer_3239 peptidase M50
YP_996401.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_1003 SUA5/YciO/YrdC/YwlC
YP_996402.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pol:Bpro_1005 PHP-like
YP_996403.1	PFAM: UspA domain protein; KEGG: rfr:Rfer_0401 UspA
YP_996404.1	KEGG: pol:Bpro_0159 hypothetical protein
YP_996405.1	PFAM: Calcium-binding EF-hand-containing protein; KEGG: pol:Bpro_0112 acid shock protein-like
YP_996406.1	PFAM: 5-nucleotidase; KEGG: rfr:Rfer_0734 5-nucleotidase
YP_996407.1	TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: rfr:Rfer_0544 general secretion pathway protein F
YP_996408.1	TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: pol:Bpro_0020 septum site-determining protein MinC
YP_996409.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0019 septum site-determining protein MinD
YP_996410.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_996411.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_996412.1	KEGG: psb:Psyr_3980 hypothetical protein
YP_996413.1	4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown
YP_996414.1	KEGG: bur:Bcep18194_B2094 filamentation induced by cAMP protein Fic
YP_996415.1	KEGG: bur:Bcep18194_B2094 filamentation induced by cAMP protein Fic
YP_996416.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_1765 transporter, LysE family
YP_996417.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_2697 type I secretion outer membrane protein, TolC
YP_996418.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mfa:Mfla_1346 type I secretion membrane fusion protein, HlyD
YP_996419.1	KEGG: pfl:PFL_5376 ABC transporter, ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_996420.1	KEGG: cch:Cag_0740 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_996421.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_996422.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: pol:Bpro_3696 DNA-directed DNA polymerase
YP_996423.1	KEGG: bxe:Bxe_B1374 hypothetical protein
YP_996424.1	PFAM: isochorismatase hydrolase; KEGG: psb:Psyr_1163 isochorismatase hydrolase
YP_996425.1	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine
YP_996427.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_996428.1	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_0950 peptidylprolyl isomerase, FKBP-type
YP_996429.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_996430.1	PFAM: fatty acid desaturase; KEGG: pol:Bpro_3804 fatty acid desaturase
YP_996431.1	PFAM: heat shock protein Hsp20; CS; KEGG: pol:Bpro_3264 heat shock protein HSP20
YP_996432.1	KEGG: pol:Bpro_0456 hypothetical protein
YP_996433.1	PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0457 phospholipid/glycerol acyltransferase
YP_996434.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_996435.1	PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_2098 hypothetical protein
YP_996437.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3167 major facilitator superfamily MFS_1
YP_996438.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_996439.1	PFAM: cation efflux protein; KEGG: pol:Bpro_3481 cation efflux protein
YP_996440.1	PFAM: blue (type 1) copper domain protein; KEGG: eba:ebA1878 predicted multicopper oxidase
YP_996441.1	PFAM: protein of unknown function DUF411; KEGG: reu:Reut_A2485 protein of unknown function DUF411
YP_996442.1	PFAM: peptidase S58, DmpA; KEGG: bmb:BruAb2_0832 hypothetical protein
YP_996443.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_996444.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xcv:XCV0672 putative signal transduction protein
YP_996445.1	KEGG: rfr:Rfer_1896 hypothetical protein; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase
YP_996446.1	KEGG: bbr:BB2694 large subunit of N,N-dimethylformamidase
YP_996447.1	KEGG: mfa:Mfla_0156 inner-membrane translocator
YP_996448.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_02467 ABC-type sugar transport system, periplasmic component
YP_996449.1	PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV3018 D-ribose transport system ATP-binding protein
YP_996450.1	PFAM: inner-membrane translocator; KEGG: atc:AGR_L_1078 ribose ABC transporter (permease)
YP_996451.1	PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pfl:PFL_0501 oxidoreductase, FAD-binding
YP_996452.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pae:PA1488 hypothetical protein
YP_996453.1	PFAM: carbohydrate kinase, FGGY; KEGG: pae:PA1487 probable carbohydrate kinase
YP_996454.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: pau:PA14_45150 putative transcriptional regulator
YP_996455.1	PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reh:H16_A2946 acetyl-CoA carboxylase (biotin carboxylase and carboxyl transferase domains)
YP_996456.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_3898 AMP-dependent synthetase and ligase
YP_996457.1	PFAM: regulatory protein, TetR; KEGG: rfr:Rfer_3897 transcriptional regulator, TetR family
YP_996458.1	KEGG: reu:Reut_A2998 extracellular ligand-binding receptor
YP_996459.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rfr:Rfer_3604 threonine aldolase
YP_996460.1	PFAM: alanine racemase domain protein; KEGG: pol:Bpro_0397 protein of unknown function UPF0001
YP_996461.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0396 twitching motility protein
YP_996462.1	PFAM: cyclic nucleotide-binding; KEGG: pfo:Pfl_1398 cyclic nucleotide-binding (cNMP-BD) protein
YP_996463.1	KEGG: eba:ebA1561 plasmid maintenance system antidote protein
YP_996464.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0395 twitching motility protein
YP_996465.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pol:Bpro_0394 2-hydroxy-3-oxopropionate reductase
YP_996466.1	KEGG: pfo:Pfl_2418 hypothetical protein
YP_996467.1	PFAM: transmembrane pair domain protein; KEGG: bte:BTH_II1937 hypothetical protein
YP_996468.1	TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: pol:Bpro_1718 guanosine monophosphate reductase
YP_996469.1	PFAM: UvrD/REP helicase; KEGG: pol:Bpro_1723 UvrD/REP helicase
YP_996471.1	PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2095 extracellular solute-binding protein, family 1
YP_996473.1	PFAM: Pyrrolo-quinoline quinone; KEGG: reh:H16_A2839 type IV pilus assembly protein, tip-associated adhesin PilY1
YP_996475.1	PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: pol:Bpro_3239 Glu/Leu/Phe/Val dehydrogenase, C terminal
YP_996476.1	PFAM: protein of unknown function DUF344; KEGG: pol:Bpro_4050 protein of unknown function DUF344
YP_996477.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pol:Bpro_1712 2-hydroxy-3-oxopropionate reductase
YP_996478.1	PFAM: aminotransferase class-III; KEGG: pol:Bpro_2003 aminotransferase class-III
YP_996479.1	similar to periplasmic-binding component of ABC transporters
YP_996480.1	similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine
YP_996481.1	similar to ATP-binding component of ABC transporters
YP_996482.1	PFAM: peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: rso:RSc1742 hypothetical protein
YP_996483.1	PFAM: protein of unknown function DUF59; KEGG: pol:Bpro_0931 putative iron sulfur binding protein
YP_996484.1	PFAM: cell wall hydrolase/autolysin; KEGG: pol:Bpro_3199 N-acetylmuramoyl-L-alanine amidase
YP_996485.1	PFAM: protein of unknown function UPF0079; KEGG: rfr:Rfer_3302 protein of unknown function UPF0079
YP_996486.1	TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: rfr:Rfer_3301 4Fe-4S cluster binding
YP_996487.1	PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_3195 auxin efflux carrier
YP_996488.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3194 uncharacterized protein UPF0065
YP_996489.1	TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pol:Bpro_3191 tyrosine recombinase XerD
YP_996491.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_0026 uncharacterized protein UPF0065
YP_996492.1	PFAM: EAL domain protein; HDOD; KEGG: mfa:Mfla_1965 diguanylate phosphodiesterase (EAL domain)
YP_996493.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: rfr:Rfer_2653 transferase hexapeptide protein
YP_996494.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_996495.1	TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: pol:Bpro_1347 urease accessory protein UreG
YP_996496.1	PFAM: Urease accessory protein UreF; KEGG: pol:Bpro_1348 urease accessory protein UreF
YP_996497.1	PFAM: UreE urease accessory domain protein domain protein; UreE urease accessory domain protein; KEGG: pol:Bpro_1349 UreE urease accessory-like
YP_996498.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_996499.1	KEGG: bte:BTH_I1497 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit
YP_996500.1	PFAM: HupE/UreJ protein; KEGG: rso:RSc2034 probable urease accessory ureJ transmembrane protein
YP_996501.1	KEGG: pol:Bpro_1352 urease, gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease, gamma subunit region
YP_996502.1	PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1353 periplasmic sensor hybrid histidine kinase
YP_996503.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_1354 two component transcriptional regulator, LuxR family
YP_996504.1	KEGG: dar:Daro_3102 hypothetical protein
YP_996506.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_4070 acyl-CoA dehydrogenase-like
YP_996507.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rfr:Rfer_4069 L-carnitine dehydratase/bile acid-inducible protein F
YP_996508.1	PFAM: protein of unknown function DUF482; KEGG: rfr:Rfer_0114 protein of unknown function DUF482
YP_996509.1	KEGG: rfr:Rfer_1699 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; ExsB family protein
YP_996510.1	PFAM: nitrogen regulatory protein P-II; KEGG: pol:Bpro_2310 nitrogen regulatory protein P-II (GlnB, GlnK)
YP_996511.1	PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_2311 conserved hypothetical protein 730
YP_996512.1	PFAM: diacylglycerol kinase; KEGG: pol:Bpro_2312 diacylglycerol kinase
YP_996513.1	PFAM: RDD domain containing protein; KEGG: rfr:Rfer_3318 RDD
YP_996514.1	KEGG: rfr:Rfer_3319 putative transmembrane protein
YP_996515.1	KEGG: rfr:Rfer_3320 putative transmembrane protein
YP_996516.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_996517.1	acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate
YP_996518.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_996519.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_996520.1	KEGG: xcv:XCV2165 putative DNA methylase
YP_996521.1	KEGG: eba:ebA2608 DNA-binding protein
YP_996522.1	PFAM: protein of unknown function DUF1016; KEGG: reu:Reut_C6349 protein of unknown function DUF1016
YP_996523.1	KEGG: xcb:XC_2078 YeeB-like protein
YP_996524.1	KEGG: xcb:XC_2079 YeeC-like protein
YP_996525.1	KEGG: pol:Bpro_2320 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_996527.1	KEGG: pol:Bpro_1330 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase
YP_996528.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_996529.1	required for 70S ribosome assembly
YP_996530.1	KEGG: pol:Bpro_3801 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_996531.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: pol:Bpro_3799 cell divisionFtsK/SpoIIIE
YP_996532.1	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rfr:Rfer_3177 outer membrane lipoprotein carrier protein LolA
YP_996533.1	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3176 AAA ATPase
YP_996534.1	PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2746 aminotransferase, class I and II
YP_996535.1	PFAM: response regulator receiver; CheW domain protein; KEGG: tbd:Tbd_1598 CheW protein
YP_996537.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: pol:Bpro_3789 NAD-dependent epimerase/dehydratase
YP_996538.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_996539.1	PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_3300 uncharacterized protein UPF0065
YP_996540.1	KEGG: pol:Bpro_3560 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
YP_996541.1	TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: rfr:Rfer_2509 poly(A) polymerase
YP_996542.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: rfr:Rfer_2510 HAD-superfamily subfamily IB, PSPase-like
YP_996543.1	PFAM: Chromosomal replication initiator, DnaA; KEGG: pol:Bpro_3564 chromosomal replication initiator, DnaA
YP_996544.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_996545.1	KEGG: pen:PSEEN4898 hypothetical protein
YP_996546.1	PFAM: protein of unknown function DUF344; KEGG: bxe:Bxe_B0632 hypothetical protein
YP_996547.1	KEGG: pol:Bpro_3568 hypothetical protein
YP_996548.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: pol:Bpro_3569 integral membrane protein MviN
YP_996549.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_996550.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0750 transcriptional regulator, RpiR family
YP_996551.1	KEGG: pol:Bpro_0752 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase
YP_996552.1	KEGG: rfr:Rfer_1097 extracellular solute-binding protein, family 1
YP_996553.1	KEGG: cvi:CV3298 maltoporin precursor
YP_996555.1	KEGG: eba:ebA584 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase
YP_996556.1	PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rfr:Rfer_2959 peptidase S1 and S6, chymotrypsin/Hap
YP_996557.1	PFAM: protein of unknown function DUF34; KEGG: pol:Bpro_0818 protein of unknown function DUF34
YP_996558.1	PFAM: transposase, IS4 family protein; KEGG: rpe:RPE_4588 transposase, IS4 family protein
YP_996560.1	PFAM: protein of unknown function DUF519; KEGG: rfr:Rfer_0720 protein of unknown function DUF519
YP_996561.1	PFAM: regulatory protein, TetR; KEGG: pol:Bpro_0153 transcriptional regulator, TetR family
YP_996562.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_2570 acyl-CoA dehydrogenase-like
YP_996563.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_996564.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rfr:Rfer_2386 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
YP_996565.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2574 ABC transporter related
YP_996566.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2575 ABC transporter related
YP_996567.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_2389 inner-membrane translocator
YP_996568.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_2577 inner-membrane translocator
YP_996569.1	KEGG: rfr:Rfer_2392 extracellular ligand-binding receptor
YP_996570.1	PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_2391 extracellular ligand-binding receptor
YP_996571.1	activates fatty acids by binding to coenzyme A
YP_996572.1	PFAM: protein of unknown function UPF0061; KEGG: rfr:Rfer_2395 protein of unknown function UPF0061
YP_996573.1	KEGG: pol:Bpro_2582 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B
YP_996574.1	Involved in cell division; probably involved in intracellular septation
YP_996575.1	PFAM: BolA family protein; KEGG: pol:Bpro_2584 BolA-like protein
YP_996576.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_2585 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_996577.1	KEGG: bur:Bcep18194_B2976 benzoate membrane transport protein
YP_996578.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pfl:PFL_2188 uncharacterized ACR
YP_996579.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_2597 L-carnitine dehydratase/bile acid-inducible protein F
YP_996580.1	PFAM: CoA-binding domain protein; KEGG: rme:Rmet_2598 CoA-binding
YP_996581.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rme:Rmet_2599 acyl-CoA dehydrogenase-like protein
YP_996582.1	PFAM: regulatory proteins, IclR; KEGG: rme:Rmet_2600 transcriptional regulator, IclR family
YP_996583.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_2596 uncharacterized protein UPF0065
YP_996584.1	KEGG: rme:Rmet_2601 hypothetical protein
YP_996585.1	KEGG: rme:Rmet_2602 thiolase
YP_996586.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_2603 enoyl-CoA hydratase/isomerase
YP_996587.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rme:Rmet_2604 short-chain dehydrogenase/reductase SDR
YP_996588.1	KEGG: sfu:Sfum_0786 hypothetical protein
YP_996590.1	KEGG: mca:MCA0789 MxaD protein, putative
YP_996591.1	KEGG: mfa:Mfla_2035 MxaL protein, putative
YP_996592.1	KEGG: mfa:Mfla_2036 hypothetical protein
YP_996593.1	SMART: von Willebrand factor, type A; KEGG: mca:MCA1528 MxaC protein, putative
YP_996594.1	KEGG: bxe:Bxe_B2418a hypothetical protein
YP_996595.1	KEGG: mca:MCA0784 hypothetical protein
YP_996596.1	PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: mfa:Mfla_1895 ATPase associated with various cellular activities, AAA_3
YP_996597.1	PFAM: methanol dehydrogenase, beta subunit; KEGG: mfa:Mfla_2041 methanol dehydrogenase, beta subunit
YP_996598.1	PFAM: cytochrome c, class I; KEGG: mca:MCA0781 cytochrome c family protein
YP_996599.1	SMART: extracellular solute-binding protein, family 3; KEGG: mfa:Mfla_2043 extracellular solute-binding protein, family 3
YP_996600.1	PFAM: Pyrrolo-quinoline quinone; KEGG: mca:MCA0779 methanol dehydrogenase protein, large subunit
YP_996601.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: reu:Reut_A0380 helix-turn-helix, AraC type
YP_996602.1	PFAM: Hydantoinase/oxoprolinase; KEGG: bur:Bcep18194_B1204 hydantoinase/oxoprolinase
YP_996603.1	KEGG: bur:Bcep18194_B1205 acetone carboxylase gamma subunit-like
YP_996604.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: fra:Francci3_2239 5-oxoprolinase (ATP-hydrolyzing)
YP_996605.1	PFAM: Hydantoinase B/oxoprolinase; KEGG: fra:Francci3_2242 hydantoinase B/oxoprolinase
YP_996606.1	KEGG: rha:RHA1_ro10158 hypothetical protein
YP_996608.1	PFAM: AMP-dependent synthetase and ligase; KEGG: bch:Bcen2424_5826 AMP-dependent synthetase and ligase
YP_996609.1	PFAM: Thiolase; KEGG: bch:Bcen2424_5827 thiolase
YP_996611.1	involved in the transport of C4-dicarboxylates across the membrane
YP_996612.1	KEGG: pol:Bpro_1729 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2
YP_996613.1	KEGG: pol:Bpro_1728 hypothetical protein
YP_996614.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine
YP_996615.1	PFAM: protein of unknown function DUF839; KEGG: pol:Bpro_1725 twin-arginine translocation pathway signal
YP_996616.1	PFAM: amino acid permease-associated region; KEGG: bam:Bamb_5201 amino acid permease-associated region
YP_996617.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_996618.1	PFAM: regulatory protein, MarR; KEGG: bja:bll2260 transcriptional regulatory protein
YP_996619.1	PFAM: alpha/beta hydrolase fold; KEGG: bja:blr2261 hypothetical protein
YP_996620.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A1115 probable extra-cytoplasmic solute receptor
YP_996621.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; homoserine dehydrogenase, NAD-binding; KEGG: bpm:BURPS1710b_1838 homoserine dehydrogenase, NAD binding domain family
YP_996622.1	PFAM: Phytanoyl-CoA dioxygenase; KEGG: sco:SCO6985 hypothetical protein
YP_996623.1	PFAM: regulatory protein, LacI; KEGG: sma:SAV7191 putative DNA-binding protein
YP_996624.1	KEGG: xcv:XCV2217 phage-related integrase
YP_996625.1	KEGG: rso:RSc1871 putative integrase prophage protein
YP_996626.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_B5695 regulatory protein, LysR:LysR, substrate-binding
YP_996627.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: sfu:Sfum_2098 carboxymuconolactone decarboxylase
YP_996628.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: bsu:BG10039 similar to unknown proteins
YP_996629.1	KEGG: rha:RHA1_ro00505 serine/threonine-protein kinase
YP_996630.1	With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems
YP_996631.1	PFAM: flagellar transcriptional activator; KEGG: rfr:Rfer_3700 flagellar transcriptional activator FlhD
YP_996633.1	PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: reh:H16_B1123 N-acyl-D-amino-acid deacylase
YP_996634.1	KEGG: reh:H16_B1124 ABC-type transporter; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_996635.1	KEGG: reh:H16_B1125 ABC-type transporter, ATPase component: PepT family; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_996636.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_5090 binding-protein-dependent transport systems inner membrane component
YP_996637.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B1127 ABC-type transporter, permease component: PepT family
YP_996638.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rme:Rmet_5088 extracellular solute-binding protein, family 5
YP_996639.1	PFAM: Uncharacterised conserved protein UCP012702; MlrC domain protein; KEGG: rme:Rmet_5087 uncharacterised conserved protein UCP012702
YP_996641.1	PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_A2319 extracellular ligand-binding receptor
YP_996642.1	PFAM: inner-membrane translocator; KEGG: rme:Rmet_2479 inner-membrane translocator
YP_996643.1	Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_996644.1	Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_996645.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A2315 ABC transporter related
YP_996646.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bpe:BP2590 putative LacI-family transcriptional regulator
YP_996647.1	PFAM: FAD linked oxidase domain protein; KEGG: rme:Rmet_5443 FAD linked oxidase-like protein
YP_996648.1	PFAM: carbohydrate kinase, FGGY; KEGG: aba:Acid345_0904 xylulokinase
YP_996649.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dra:DR2153 putative polar amino acid transport system ATP-binding protein
YP_996650.1	PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV6357 putative periplasmic substrate binding protein
YP_996651.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hwa:HQ1991A ABC-type sugar/sn-glycerol-3-phosphate transport system, periplasmic protein
YP_996652.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll0851 putative multiple sugar transport system permease protein
YP_996653.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1190 3-ketoacyl-(acyl-carrier-protein) reductase
YP_996654.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_996655.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rme:Rmet_5893 acyl-CoA dehydrogenase-like protein
YP_996656.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5894 uncharacterized protein UPF0065
YP_996657.1	KEGG: bte:BTH_II1355 pANL12
YP_996658.1	PFAM: protein of unknown function DUF497; KEGG: bte:BTH_II1354 pANL56
YP_996659.1	PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: rfr:Rfer_3446 beta-lactamase-like
YP_996660.1	PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_1128 RNA-binding S4
YP_996661.1	PFAM: protein of unknown function DUF898, transmembrane; KEGG: ade:Adeh_3533 protein of unknown function DUF898
YP_996663.1	PFAM: protein of unknown function DUF898, transmembrane; KEGG: rso:RSc0643 probable transmembrane protein
YP_996664.1	PFAM: peptidase M48, Ste24p; KEGG: rso:RSc0644 putative transmembrane protein
YP_996665.1	PFAM: protein of unknown function DUF849; KEGG: rpe:RPE_2252 protein of unknown function DUF849
YP_996666.1	PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bpm:BURPS1710b_A1152 carbamoyl-phosphate synthase L chain, ATP binding domain protein
YP_996667.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpc:RPC_3206 acyl-CoA dehydrogenase-like
YP_996668.1	PFAM: carboxyl transferase; KEGG: bpm:BURPS1710b_A1149 acetyl-CoA carboxylase carboxyltransferase
YP_996669.1	PFAM: regulatory protein, TetR; KEGG: pol:Bpro_3920 transcriptional regulator, TetR family
YP_996670.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_996671.1	KEGG: pol:Bpro_3933 hypothetical protein
YP_996672.1	catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_996673.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_996674.1	PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: reu:Reut_B5389 regulatory protein GntR, HTH:UbiC transcription regulator-associated
YP_996675.1	PFAM: Extracellular ligand-binding receptor; KEGG: reh:H16_A1539 ABC-type transporter, periplasmic component: HAAT family
YP_996676.1	PFAM: inner-membrane translocator; KEGG: reh:H16_A1540 ABC-type transporter, permease component: HAAT family
YP_996677.1	PFAM: inner-membrane translocator; KEGG: reh:H16_A1541 ABC-type transporter, permease component
YP_996678.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A1542 ABC-type transporter, ATPase component: HAAT family
YP_996679.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A1543 ABC-type transporter, ATPase component: HAAT family
YP_996680.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B0053 probable extra-cytoplasmic solute receptor
YP_996681.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis
YP_996682.1	TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: bbr:BB4086 putative 3-isopropylmalate dehydratase small subunit
YP_996683.1	PFAM: Hydantoinase B/oxoprolinase; KEGG: sil:SPO1473 hydantoin utilization protein B, putative
YP_996684.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: jan:Jann_3765 5-oxoprolinase (ATP-hydrolyzing)
YP_996685.1	PFAM: isochorismatase hydrolase; KEGG: jan:Jann_3766 isochorismatase hydrolase
YP_996686.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: jan:Jann_3768 fumarate reductase/succinate dehydrogenase flavoprotein-like
YP_996687.1	KEGG: bbr:BB4087 putative isocitrate lyase-family enzyme
YP_996688.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rfr:Rfer_2214 dihydrolipoamide dehydrogenase
YP_996689.1	TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pol:Bpro_2671 dihydrolipoamide acetyltransferase
YP_996690.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_996691.1	KEGG: pol:Bpro_2673 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_996692.1	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_2674 two component transcriptional regulator, LuxR family
YP_996693.1	PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: rfr:Rfer_2209 methenyltetrahydrofolate cyclohydrolase
YP_996694.1	PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: rfr:Rfer_2208 oligopeptidase A
YP_996695.1	PFAM: glutaredoxin; KEGG: pol:Bpro_2856 glutaredoxin
YP_996696.1	KEGG: vpa:VPA0708 putative acetyltransferase
YP_996697.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV3086 histidine transport system permease protein
YP_996698.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV3087 histidine transport system membrane protein M
YP_996699.1	PFAM: extracellular solute-binding protein, family 3; KEGG: mlo:mlr0549 probable amino acid binding protein of ABC transporter
YP_996700.1	PFAM: Uncharacterised conserved protein UCP012702; MlrC domain protein; KEGG: mlo:mlr5988 hypothetical protein
YP_996701.1	KEGG: pau:PA14_52750 arginine/ornithine transport protein AotP
YP_996702.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B0983 probable extra-cytoplasmic solute receptor
YP_996703.1	PFAM: gamma-glutamyltranspeptidase; KEGG: reh:H16_B0984 gamma-glutamyltransferase 2
YP_996704.1	thiamine-pyrophosphate requiring enzyme
YP_996705.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_996706.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_996709.1	PFAM: protein of unknown function DUF883, ElaB; KEGG: cvi:CV3467 transmembrane protein
YP_996710.1	PFAM: aldehyde dehydrogenase; KEGG: reh:H16_B2130 betaine-aldehyde dehydrogenase
YP_996711.1	KEGG: pfl:PFL_2489 hypothetical protein
YP_996712.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rle:pRL110579 putative transmembrane protein
YP_996713.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bur:Bcep18194_B2838 glucose-methanol-choline oxidoreductase
YP_996714.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transport system, permease component II
YP_996715.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_3637 binding-protein-dependent transport systems inner membrane component
YP_996716.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_01472 ABC-type spermidine/putrescine transport system, ATPase components
YP_996718.1	KEGG: abo:ABO_2080 hypothetical protein
YP_996719.1	KEGG: abo:ABO_2079 hypothetical protein
YP_996720.1	KEGG: rme:Rmet_6257 hypothetical protein
YP_996721.1	KEGG: rme:Rmet_6256 hypothetical protein
YP_996722.1	KEGG: mfa:Mfla_0158 putative N,N-dimethylformamidase
YP_996723.1	PFAM: inner-membrane translocator; KEGG: rpb:RPB_2051 inner-membrane translocator
YP_996724.1	PFAM: inner-membrane translocator; KEGG: mfa:Mfla_0155 inner-membrane translocator
YP_996725.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_2049 ABC transporter related
YP_996726.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mfa:Mfla_0153 ABC transporter related
YP_996727.1	KEGG: rpb:RPB_2047 twin-arginine translocation pathway signal
YP_996728.1	KEGG: mfa:Mfla_0459 ferredoxin-dependent glutamate synthase
YP_996729.1	PFAM: Extracellular ligand-binding receptor; KEGG: mlo:mlr7182 ABC transporter, amino acid-binding protein
YP_996730.1	PFAM: FAD dependent oxidoreductase; KEGG: mlo:mll5443 probable dehydrogenase
YP_996731.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: reu:Reut_B3471 helix-turn-helix, AraC type
YP_996732.1	PFAM: alpha/beta hydrolase fold; KEGG: rso:RS03059 putative esterase protein
YP_996733.1	PFAM: FAD dependent oxidoreductase; KEGG: reu:Reut_B3467 FAD dependent oxidoreductase
YP_996734.1	PFAM: cyclase family protein; KEGG: rso:RSc1835 hypothetical protein
YP_996735.1	PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: pol:Bpro_4734 thiamine pyrophosphate enzyme-like TPP-binding
YP_996736.1	Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
YP_996737.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A1115 probable extra-cytoplasmic solute receptor
YP_996738.1	PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll5441 ABC transporter, periplasmic peptide-binding protein
YP_996739.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5440 ABC transporter, permease protein
YP_996740.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5439 ABC transporter, permease protein
YP_996741.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: mlo:mll5437 ABC transporter ATP-binding protein
YP_996742.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll5436 ABC transporter ATP-binding protein
YP_996744.1	KEGG: she:Shewmr4_0384 putative outer membrane adhesin like protein
YP_996746.1	TIGRFAM: outer membrane protein; KEGG: pfo:Pfl_0160 glycosyl hydrolase, BNR repeat
YP_996748.1	TIGRFAM: outer membrane protein; KEGG: pen:PSEEN0746 hypothetical protein
YP_996750.1	TIGRFAM: outer membrane protein; KEGG: pfo:Pfl_0160 glycosyl hydrolase, BNR repeat
YP_996752.1	PFAM: extracellular solute-binding protein, family 3; KEGG: bam:Bamb_6460 extracellular solute-binding protein, family 3
YP_996753.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_6459 ABC transporter related
YP_996754.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_6458 polar amino acid ABC transporter, inner membrane subunit
YP_996755.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_996756.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bam:Bamb_6456 transcriptional regulator, LysR family
YP_996757.1	KEGG: dar:Daro_4043 extracellular ligand-binding receptor
YP_996758.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_5131 ABC transporter related
YP_996759.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_5130 ABC transporter related
YP_996760.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_5129 inner-membrane translocator
YP_996761.1	PFAM: inner-membrane translocator; KEGG: dar:Daro_4044 inner-membrane translocator
YP_996762.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bur:Bcep18194_C7070 short chain dehydrogenase
YP_996763.1	PFAM: isochorismatase hydrolase; KEGG: bur:Bcep18194_C7071 isochorismatase hydrolase
YP_996764.1	PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: bur:Bcep18194_C7072 aromatic-ring-hydroxylating dioxygenase, beta subunit
YP_996765.1	PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: bur:Bcep18194_C7073 ring hydroxylating dioxygenase, alpha subunit
YP_996766.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bam:Bamb_6310 transcriptional regulator, AraC family
YP_996769.1	PFAM: regulatory protein, TetR; KEGG: ccr:CC2662 transcriptional regulator, TetR family
YP_996770.1	KEGG: bxe:Bxe_C0664 putative pyruvate decarboxylase
YP_996771.1	PFAM: FAD dependent oxidoreductase; KEGG: reh:H16_A0770 D-amino-acid dehydrogenase
YP_996772.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bja:bll5596 ABC transporter substrate-binding protein
YP_996773.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0866 putative ABC transporter permease protein
YP_996774.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpa:BPP0780 putative peptide ABC transporter permease protein
YP_996775.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: bbr:BB0864 putative ABC transpoter ATP-binding protein
YP_996776.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B1370 probable extra-cytoplasmic solute receptor
YP_996777.1	PFAM: major facilitator superfamily MFS_1; KEGG: ppu:PP_1112 hypothetical protein
YP_996778.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_5277 acyl-CoA dehydrogenase-like
YP_996779.1	KEGG: bja:bll6374 citrate synthase
YP_996780.1	PFAM: putative sugar-binding domain protein; KEGG: rde:RD1_3641 ery operon repressor, putative
YP_996781.1	PFAM: extracellular solute-binding protein, family 1; KEGG: mlo:mlr7261 ABC transporter binding protein
YP_996782.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01627 putative permease ABC transporter protein
YP_996783.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01626 putative permease ABC transporter protein
YP_996784.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc01625 putative ABC transporter ATP-binding protein
YP_996785.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMc01624 putative ABC transporter ATP-binding protein
YP_996786.1	PFAM: carbohydrate kinase, FGGY; KEGG: mlo:mlr7268 xylulose kinase
YP_996787.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sme:SMc01622 putative phosphoglycerate dehydrogenase
YP_996788.1	PFAM: FAD dependent oxidoreductase; KEGG: fal:FRAAL1569 glycerol-3-phosphate oxidase
YP_996789.1	PFAM: class II aldolase/adducin family protein; KEGG: rru:Rru_A0359 class II aldolase/adducin-like
YP_996790.1	PFAM: carbohydrate kinase, FGGY; KEGG: noc:Noc_1697 carbohydrate kinase, FGGY
YP_996791.1	TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sme:SMc01617 hypothetical protein
YP_996792.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: dar:Daro_2666 filamentation induced by cAMP protein Fic
YP_996793.1	PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A4343 ABC sugar transporter, inner membrane subunit
YP_996794.1	PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A4342 ABC sugar transporter, inner membrane subunit
YP_996795.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A4341 ABC sugar transporter, fused ATPase subunits
YP_996796.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_A4340 ABC sugar transporter, periplasmic ligand binding protein
YP_996797.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: bxe:Bxe_A4339 transcriptional regulator, LacI family
YP_996798.1	PFAM: Aldose 1-epimerase; KEGG: bur:Bcep18194_B2372 aldose 1-epimerase
YP_996799.1	KEGG: syg:sync_1920 gluconolactonase precursor
YP_996800.1	PFAM: class II aldolase/adducin family protein; KEGG: mlo:mlr3601 hypothetical protein
YP_996802.1	TIGRFAM: outer membrane protein; KEGG: neu:NE0161 hemolysin-type calcium-binding region:RTX N-terminal domain
YP_996805.1	KEGG: pen:PSEEN0746 hypothetical protein
YP_996806.1	TIGRFAM: outer membrane protein; KEGG: neu:NE0161 hemolysin-type calcium-binding region:RTX N-terminal domain
YP_996807.1	PFAM: PilT protein domain protein; KEGG: reh:H16_A3381 plasmid stability protein StbB
YP_996808.1	TIGRFAM: prevent-host-death family protein; KEGG: reh:H16_A3382 antitoxin of toxin-antitoxin stability system
YP_996809.1	PFAM: putative sugar-binding domain protein; KEGG: bpm:BURPS1710b_A1790 PTS system, mannitol-specific IIBC component
YP_996810.1	TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: pol:Bpro_1460 sugar-phosphate isomerases, RpiB/LacA/LacB family
YP_996811.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bps:BPSS0258 putative dehydrogenase
YP_996812.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bms:BR1630 sugar-binding transcriptional regulator, LacI family
YP_996813.1	PFAM: inner-membrane translocator; KEGG: psp:PSPPH_2728 ribose ABC transporter, ATP-binding protein
YP_996814.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bma:BMAA1814 sugar ABC transporter, ATP-binding protein
YP_996815.1	in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone
YP_996816.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nfa:nfa24610 putative hydrolase
YP_996817.1	PFAM: protein of unknown function DUF299; KEGG: pol:Bpro_3043 protein of unknown function DUF299
YP_996818.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_996819.1	KEGG: rfr:Rfer_2192 Na+/solute symporter
YP_996820.1	PFAM: Na+/solute symporter; KEGG: rfr:Rfer_2192 Na+/solute symporter
YP_996821.1	KEGG: pol:Bpro_4141 hypothetical protein
YP_996822.1	KEGG: pol:Bpro_3120 putative transcriptional regulator
YP_996825.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_2352 L-carnitine dehydratase/bile acid-inducible protein F
YP_996826.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: pol:Bpro_3097 sigma 70 (RpoD)
YP_996827.1	PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_3580 beta-lactamase-like
YP_996828.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bch:Bcen2424_5283 transcriptional regulator, LysR family
YP_996829.1	KEGG: pol:Bpro_0384 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_996830.1	KEGG: pol:Bpro_0383 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_996831.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0382 binding-protein-dependent transport systems inner membrane component
YP_996832.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0381 binding-protein-dependent transport systems inner membrane component
YP_996833.1	PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_0380 extracellular solute-binding protein, family 5
YP_996834.1	PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_2141 thioesterase superfamily
YP_996835.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_996836.1	KEGG: pol:Bpro_3079 putative transmembrane protein
YP_996837.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_996838.1	PFAM: protein of unknown function DUF195; KEGG: mca:MCA0339 hypothetical protein
YP_996839.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3076 major facilitator superfamily MFS_1
YP_996840.1	PFAM: class II aldolase/adducin family protein; KEGG: bxe:Bxe_B0321 putative adolase/adducin
YP_996841.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B0539 major facilitator superfamily (MFS_1) transporter
YP_996842.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:blr3225 oxidoreductase
YP_996843.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mlo:mlr4932 hypothetical protein
YP_996844.1	PFAM: carbohydrate kinase, FGGY; KEGG: sme:SMc02335 putative pentose kinase protein
YP_996845.1	PFAM: inner-membrane translocator; KEGG: sme:SMc02452 putative transport system permease ABC transporter protein
YP_996846.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb20855 putative sugar uptake ABC transporter ATP-binding protein
YP_996847.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20856 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
YP_996848.1	KEGG: sme:SMc02044 hypothetical protein
YP_996849.1	catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate
YP_996850.1	PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_1026 FAD linked oxidase-like
YP_996851.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sme:SMc02460 hypothetical protein
YP_996852.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_4206 transcriptional regulator, LysR family
YP_996854.1	catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica
YP_996855.1	TIGRFAM: CitB domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3489 citrate utilization protein B
YP_996856.1	PFAM: aldehyde dehydrogenase; KEGG: rme:Rmet_4430 aldehyde dehydrogenase
YP_996857.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rme:Rmet_4431 6-phosphogluconate dehydrogenase, NAD-binding
YP_996858.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: pol:Bpro_3140 2-nitropropane dioxygenase, NPD
YP_996859.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like
YP_996860.1	PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rfr:Rfer_4165 electron transfer flavoprotein, alpha subunit
YP_996861.1	PFAM: electron transfer flavoprotein beta-subunit; KEGG: bbr:BB0620 electron transfer flavoprotein beta-subunit
YP_996863.1	PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3145 histone deacetylase superfamily
YP_996864.1	PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rfr:Rfer_2529 AAA_3 ATPase
YP_996865.1	PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3147 protein of unknown function DUF58
YP_996866.1	PFAM: transglutaminase domain protein; KEGG: pol:Bpro_3148 transglutaminase-like
YP_996867.1	TIGRFAM: lytic murein transglycosylase B; KEGG: pol:Bpro_3149 lytic murein transglycosylase B
YP_996868.1	PFAM: Fmu (Sun) domain protein; KEGG: rfr:Rfer_3183 Fmu (Sun)
YP_996869.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_996870.1	PFAM: protein of unknown function DUF480; KEGG: rfr:Rfer_1648 protein of unknown function DUF480
YP_996871.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3845 acyl-CoA dehydrogenase-like
YP_996872.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rfr:Rfer_1645 acyl-CoA dehydrogenase-like
YP_996873.1	PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: gvi:gll3576 hypothetical protein
YP_996874.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_3847 HNH endonuclease
YP_996875.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_996876.1	TIGRFAM: isoleucyl-tRNA synthetase; KEGG: rfr:Rfer_1432 isoleucyl-tRNA synthetase
YP_996877.1	KEGG: pol:Bpro_3850 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II
YP_996878.1	PFAM: protein of unknown function DUF1446; KEGG: reh:H16_B1823 conserved hypothetical protein
YP_996879.1	KEGG: reh:H16_B1824 conserved hypothetical protein
YP_996880.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4609 uncharacterized protein UPF0065
YP_996881.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_B2263 transcriptional regulator, LysR family
YP_996882.1	TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rde:RD1_3083 oxidoreductase, putative
YP_996883.1	TIGRFAM: L-rhamnose catabolism isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SMc02321 putative sugar isomerase protein
YP_996884.1	KEGG: sme:SMc02324 putative periplasmic binding ABC transporter protein
YP_996885.1	TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02324 putative periplasmic binding ABC transporter protein
YP_996886.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02325 putative ATP-binding ABC transporter protein
YP_996887.1	PFAM: inner-membrane translocator; KEGG: rle:pRL110411 putative substrate-binding component of ABC transporter involved in competition for nodulation
YP_996888.1	PFAM: inner-membrane translocator; KEGG: jan:Jann_2597 inner-membrane translocator
YP_996889.1	PFAM: protein of unknown function DUF718; KEGG: rde:RD1_3076 hypothetical protein
YP_996890.1	PFAM: carbohydrate kinase, FGGY; KEGG: rle:pRL110408 putative L-xylulose kinase involved in competition for nodulation
YP_996891.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; fatty acid desaturase; Rieske [2Fe-2S] domain protein; KEGG: psp:PSPPH_2339 MocD
YP_996892.1	KEGG: psp:PSPPH_2342 hypothetical protein
YP_996893.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_0394 binding-protein-dependent transport systems inner membrane component
YP_996894.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A0468 ABC-type transporter, ATPase component: TauT family
YP_996895.1	KEGG: reh:H16_A0467 ABC-type transporter, periplasmic component: TauT family
YP_996896.1	PFAM: PfkB domain protein; KEGG: bur:Bcep18194_A4749 ribokinase
YP_996897.1	PFAM: inner-membrane translocator; KEGG: pen:PSEEN1954 ribose ABC transporter, permease protein RbsC
YP_996898.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1504 ABC transporter related
YP_996899.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bch:Bcen2424_1606 periplasmic binding protein/LacI transcriptional regulator
YP_996901.1	PFAM: regulatory protein, LysR; KEGG: bur:Bcep18194_B2741 transcriptional regulator, LysR family
YP_996902.1	phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_996903.1	KEGG: pol:Bpro_4213 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_996904.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase
YP_996906.1	PFAM: AzlC family protein; KEGG: stl:stu1769 branched chain amino acid exporter (LIV-E) family protein
YP_996907.1	KEGG: fal:FRAAL2418 hypothetical protein; putative signal peptide
YP_996908.1	PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_B0832 2-phosphonopropionate transporter, MFS-type,OPA family
YP_996909.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: reh:H16_B0831 alcohol dehydrogenase, class IV
YP_996910.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reh:H16_B0830 transcriptional regulator, LysR-family
YP_996911.1	PFAM: aminotransferase class-III; KEGG: bxe:Bxe_C0061 putative aminotransferase
YP_996912.1	PFAM: aldehyde dehydrogenase; KEGG: bam:Bamb_6023 succinate-semialdehyde dehydrogenase (NAD(P)(+))
YP_996913.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: bxe:Bxe_C0059 transcriptional regulator, AsnC family
YP_996914.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: bxe:Bxe_C0058 hypothetical protein
YP_996915.1	PFAM: peptidase M24; KEGG: bxe:Bxe_C0063 putative peptidase
YP_996916.1	putative cyclodeaminase
YP_996917.1	catalyzes the formation of 2-oxobutanoate from L-threonine; involved in ectoine utilization
YP_996918.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: bxe:Bxe_C0055 transcriptional regulator, GntR
YP_996919.1	PFAM: extracellular solute-binding protein, family 3; KEGG: ppu:PP_4428 amino acid ABC transporter, periplasmic amino acid-binding protein
YP_996920.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; Beta tubulin, autoregulation binding site; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppu:PP_4427 amino acid ABC transporter, permease protein
YP_996921.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppu:PP_4426 amino acid ABC transporter, permease protein
YP_996922.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP_4425 amino acid ABC transporter, ATP-binding protein
YP_996923.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: rfr:Rfer_3698 CBS
YP_996924.1	Transfers the fatty acyl group on membrane lipoproteins
YP_996925.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_996926.1	PFAM: beta-ketoacyl synthase; KEGG: pau:PA14_43690 beta-ketoacyl-ACP synthase I
YP_996927.1	KEGG: cch:Cag_1820 hypothetical protein
YP_996928.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_996929.1	KEGG: rfr:Rfer_3695 glycine--tRNA ligase
YP_996930.1	TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pol:Bpro_4201 histidinol-phosphate phosphatase
YP_996931.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_4200 phospholipid/glycerol acyltransferase
YP_996932.1	PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_4199 protein of unknown function DUF45
YP_996933.1	SMART: Rhodanese domain protein; KEGG: rfr:Rfer_3613 rhodanese-like
YP_996934.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_996936.1	PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated
YP_996937.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0642 ABC transporter related
YP_996938.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: rfr:Rfer_0571 response regulator receiver modulated CheB methylesterase
YP_996939.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_996940.1	PFAM: MCP methyltransferase, CheR-type; KEGG: rfr:Rfer_0569 MCP methyltransferase, CheR-type
YP_996941.1	PFAM: CheW domain protein; KEGG: rfr:Rfer_0568 CheW protein
YP_996942.1	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rfr:Rfer_0567 CheA signal transduction histidine kinases
YP_996943.1	PFAM: response regulator receiver; KEGG: rfr:Rfer_0566 response regulator receiver domain protein
YP_996944.1	KEGG: rfr:Rfer_0565 hypothetical protein
YP_996945.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rfr:Rfer_0564 putative signal transduction histidine kinase
YP_996946.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rfr:Rfer_0563 two component transcriptional regulator, LuxR family
YP_996947.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: reh:H16_B0464 glutathione S-transferase
YP_996948.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: ppu:PP_2607 hypothetical protein
YP_996949.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: ccr:CC1803 3-oxoacyl-(acyl-carrier-protein) reductase, putative
YP_996950.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_0636 TRAP-T family transporter, DctP (periplasmic binding) subunit
YP_996951.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_0634 TRAP-T family transporter, DctM (12 TMs) subunit
YP_996952.1	KEGG: rsp:RSP_0635 TRAP-T family transporter, DctQ (4 TMs) subunit
YP_996953.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mes:Meso_3712 short-chain dehydrogenase/reductase SDR
YP_996954.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: hne:HNE_2206 transcriptional regulator, GntR family
YP_996955.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_996956.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pol:Bpro_1093 peptidase U62, modulator of DNA gyrase
YP_996957.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pol:Bpro_1091 rod shape-determining protein RodA
YP_996958.1	PFAM: acyltransferase 3; KEGG: atc:AGR_L_3583 exopolysaccharide production protein ExoZ
YP_996959.1	PFAM: acyltransferase 3; KEGG: xom:XOO_0713 putative O-antigen acetylase
YP_996960.1	PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase
YP_996961.1	PFAM: ribonuclease II; KEGG: rfr:Rfer_3411 ribonuclease II
YP_996962.1	TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like
YP_996963.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_996964.1	TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51; KEGG: rfr:Rfer_3419 monofunctional biosynthetic peptidoglycan transglycosylase
YP_996966.1	KEGG: net:Neut_1256 ISRm2011-2 transposase protein
YP_996968.1	PFAM: protein of unknown function DUF81; KEGG: plu:plu4425 hypothetical protein
YP_996969.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: ssn:SSO_3813 RhsB protein in rhs element
YP_996970.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: hit:NTHI1569 hypothetical protein
YP_996972.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_1727 L-carnitine dehydratase/bile acid-inducible protein F
YP_996973.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_B4461 enoyl-CoA hydratase/isomerase
YP_996974.1	KEGG: rme:Rmet_1722 acyl-CoA dehydrogenase-like protein
YP_996975.1	KEGG: reu:Reut_B4463 propionyl-CoA carboxylase
YP_996976.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal
YP_996977.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_B5205 short-chain dehydrogenase/reductase SDR
YP_996978.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5204 hypothetical protein
YP_996979.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_996981.1	PFAM: transposase, IS4 family protein; KEGG: eba:ebA6355 transposase, IS4 family
YP_996982.1	SMART: regulatory proteins, IclR; KEGG: bbr:BB1495 putative transcriptional regulator
YP_996984.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sma:SAV2123 putative acyl-CoA dehydrogenase
YP_996985.1	PFAM: PTS system glucitol/sorbitol-specific IIA component; KEGG: mlo:mll3610 PTS system, glucitol/sorbitol-specific IIA component
YP_996986.1	PFAM: Sorbitol phosphotransferase enzyme II domain protein; KEGG: mlo:mll3613 phosphotransferase system enzyme II, BC component
YP_996987.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: tte:TTE0182 PTS system, galactitol-specific enzyme II, B component
YP_996988.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: tte:TTE0181 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
YP_996989.1	PFAM: PTS system Galactitol-specific IIC component; KEGG: tte:TTE0183 PTS system, galactitol-specific IIC component
YP_996990.1	TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: mlo:mll3609 phosphotransferase system enzyme I
YP_996991.1	TIGRFAM: PTS system, glucitol/sorbitol-specific, IIC subunit; PFAM: PTS system enzyme II sorbitol-specific factor; KEGG: mlo:mll3614 phosphotransferase system enzyme II, C2 component (permease)
YP_996992.1	PFAM: Glucitol operon activator; KEGG: mlo:mll3616 unknown protein
YP_996993.1	KEGG: mlo:mlr3617 hypothetical protein
YP_996994.1	PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: bmb:BruAb2_1023 dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase
YP_996995.1	PFAM: Transketolase, central region; Transketolase domain protein; KEGG: mlo:mll3628 acetoin dehydrogenase (TPP-dependent) beta chain
YP_996996.1	PFAM: dehydrogenase, E1 component; KEGG: mlo:mll3629 acetoin dehydrogenase (TPP-dependent) alpha chain
YP_996997.1	PFAM: homoserine dehydrogenase, NAD-binding; KEGG: mes:Meso_3688 homoserine dehydrogenase, NAD-binding
YP_996998.1	PFAM: putative sugar-binding domain protein; KEGG: mlo:mll3605 transcriptional regulator
YP_996999.1	KEGG: reu:Reut_A1775 argininosuccinate lyase
YP_997000.1	PFAM: protein of unknown function DUF6, transmembrane; Protein of unknown function DUF250; KEGG: pol:Bpro_3877 protein of unknown function DUF6, transmembrane
YP_997001.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_1429 alcohol dehydrogenase, zinc-binding
YP_997002.1	PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3852 NUDIX hydrolase
YP_997003.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bja:bll4544 ABC transporter substrate-binding protein
YP_997004.1	KEGG: mes:Meso_1000 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_997005.1	KEGG: mlo:mll9145 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_997006.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll4541 ABC transporter permease protein
YP_997007.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll4540 ABC transporter permease protein
YP_997008.1	PFAM: sulfatase; KEGG: rle:pRL90232 putative sulfatase
YP_997010.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2353 binding-protein-dependent transport systems inner membrane component
YP_997011.1	KEGG: sme:SMa1466 probable ABC transporter ATP binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_997012.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa1465 putative ABC transporter permease
YP_997013.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: csa:Csal_2356 substrate-binding region of ABC-type glycine betaine transport system
YP_997014.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: csa:Csal_2359 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_997015.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sfu:Sfum_1260 acyl-CoA dehydrogenase domain protein
YP_997016.1	PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK1315 acyl-CoA synthase
YP_997017.1	KEGG: nfa:nfa29860 putative enoyl-CoA hydratase/isomerase family protein
YP_997018.1	PFAM: MmgE/PrpD family protein; KEGG: sil:SPO0205 MmgE/PrpD family protein
YP_997019.1	PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN5180 transcriptional regulator, AraC family
YP_997020.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2037 RND efflux system, outer membrane lipoprotein, NodT
YP_997021.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2036 hydrophobe/amphiphile efflux-1 HAE1
YP_997022.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2035 secretion protein HlyD
YP_997023.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_997024.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_997025.1	KEGG: rfr:Rfer_3597 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein
YP_997026.1	binds directly to 23S ribosomal RNA
YP_997027.1	PFAM: ribosomal protein L1; KEGG: rfr:Rfer_3595 ribosomal protein L1
YP_997028.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_997029.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_997030.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_997031.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_997032.1	TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_4436 sun protein
YP_997033.1	KEGG: pol:Bpro_4435 putative proline rich signal peptide protein
YP_997034.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: pol:Bpro_4434 multi-sensor signal transduction histidine kinase
YP_997035.1	PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: pol:Bpro_4433 two component transcriptional regulator, fis family
YP_997036.1	PFAM: protein of unknown function DUF718; KEGG: sit:TM1040_3394 protein of unknown function DUF718
YP_997037.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_3962 mandelate racemase/muconate lactonizing enzyme
YP_997038.1	PFAM: MaoC domain protein dehydratase; KEGG: mlo:mll7145 similar to monoamine oxidase regulatory protein
YP_997039.1	KEGG: sme:SMb21090 conserved hypothetical membrane-anchored protein
YP_997040.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mlo:mll7158 hypothetical protein
YP_997041.1	PFAM: MaoC domain protein dehydratase; KEGG: sme:SMb20978 hypothetical protein
YP_997042.1	PFAM: amidohydrolase 2; KEGG: rle:pRL110601 hypothetical protein
YP_997043.1	PFAM: oxidoreductase domain protein; KEGG: bmb:BruAb1_0236 oxidoreductase, Gfo/Idh/MocA family
YP_997044.1	PFAM: extracellular solute-binding protein, family 1; KEGG: mlo:mll7154 ABC transporter, periplasmic substrate-binding protein
YP_997045.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_3398 binding-protein-dependent transport systems inner membrane component
YP_997046.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_3397 binding-protein-dependent transport systems inner membrane component
YP_997047.1	PFAM: regulatory proteins, IclR; KEGG: bxe:Bxe_B2965 transcriptional regulator, IclR family
YP_997048.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: rso:RSc1352 probable two-component response regulator transcription regulator protein
YP_997049.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: rme:Rmet_1380 histidine kinase internal region
YP_997050.1	KEGG: rso:RSc1350 probable transmembrane protein
YP_997051.1	KEGG: bcn:Bcen_4815 PilT protein-like
YP_997052.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2826 secretion protein HlyD
YP_997053.1	PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2827 acriflavin resistance protein
YP_997054.1	PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2828 acriflavin resistance protein
YP_997055.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_997056.1	PFAM: plasmid stabilization system; KEGG: bam:Bamb_6594 plasmid stabilization system
YP_997057.1	KEGG: bam:Bamb_6595 putative transcriptional regulators, CopG/Arc/MetJ family
YP_997058.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_3281 uroporphyrin-III C-methyltransferase
YP_997059.1	PFAM: glycosyl transferase, family 3; KEGG: pol:Bpro_3280 glycosyl transferase, family 3
YP_997060.1	PFAM: sulfatase; KEGG: nar:Saro_0474 sulfatase
YP_997061.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1787 hypothetical protein
YP_997062.1	PFAM: chemotaxis sensory transducer; KEGG: rfr:Rfer_3937 methyl-accepting chemotaxis sensory transducer
YP_997063.1	PFAM: phospholipase/Carboxylesterase; KEGG: pol:Bpro_1861 phospholipase/carboxylesterase
YP_997064.1	PFAM: Class I peptide chain release factor; KEGG: rfr:Rfer_1386 class I peptide chain release factor
YP_997065.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_997066.1	PFAM: ribosomal protein L17; KEGG: rfr:Rfer_4216 ribosomal protein L17
YP_997067.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_997068.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_997069.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_997070.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_997071.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_997072.1	PFAM: ribosomal protein L15; KEGG: pol:Bpro_0494 ribosomal protein L15
YP_997073.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_997074.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_997075.1	binds 5S rRNA along with protein L5 and L25
YP_997076.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_997077.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_997078.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_997079.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_997080.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_997081.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_997082.1	PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_0483 twin-arginine translocation pathway signal
YP_997083.1	KEGG: rfr:Rfer_3672 putative integral membrane protein
YP_997084.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0481 binding-protein-dependent transport systems inner membrane component
YP_997085.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0480 binding-protein-dependent transport systems inner membrane component
YP_997086.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0479 ABC transporter related
YP_997087.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0478 ABC transporter related
YP_997088.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: pol:Bpro_0477 transcriptional regulator, DeoR family
YP_997089.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: pol:Bpro_0476 glycerol kinase
YP_997090.1	KEGG: pol:Bpro_0475 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent
YP_997091.1	KEGG: pol:Bpro_3196 putative transposase
YP_997092.1	KEGG: xac:XACb0003 hypothetical protein
YP_997093.1	KEGG: bch:Bcen2424_5221 putative transcriptional regulator, AsnC family
YP_997094.1	KEGG: pol:Bpro_3196 putative transposase
YP_997095.1	TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: rfr:Rfer_3680 4-hydroxybenzoate polyprenyl transferase
YP_997096.1	PFAM: lipolytic enzyme, G-D-S-L family; KEGG: reu:Reut_A1943 putative arylesterase protein
YP_997097.1	PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: rfr:Rfer_2024 adenylate cyclase
YP_997098.1	PFAM: Ferritin, Dps family protein; KEGG: cvi:CV4253 DNA-binding stress protein
YP_997099.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_3681 transcriptional regulator, LysR family
YP_997100.1	catalyzes branch migration in Holliday junction intermediates
YP_997101.1	PFAM: Queuosine biosynthesis protein; KEGG: rfr:Rfer_0628 S-adenosylmethionine
YP_997102.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1774 TRAP dicarboxylate transporter-DctP subunit
YP_997103.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_1773 hypothetical protein
YP_997104.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_1772 TRAP dicarboxylate transporter-DctM subunit
YP_997105.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_997106.1	PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_3075 conserved hypothetical protein 730
YP_997108.1	TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: rfr:Rfer_1751 DNA repair protein RecO
YP_997109.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_997110.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rfr:Rfer_1754 beta-N-acetylhexosaminidase
YP_997111.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_997112.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_1668 secretion protein HlyD
YP_997113.1	PFAM: acriflavin resistance protein; KEGG: pol:Bpro_1667 acriflavin resistance protein
YP_997114.1	PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_2602 protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_997115.1	SMART: Rhodanese domain protein; KEGG: rfr:Rfer_2603 rhodanese-like
YP_997116.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC
YP_997117.1	Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate
YP_997118.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_2492 phenylacetic acid degradation-related protein
YP_997119.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: rfr:Rfer_2491 alcohol dehydrogenase, zinc-binding
YP_997120.1	PFAM: cytochrome c, class I; KEGG: pol:Bpro_1223 cytochrome c, class I
YP_997121.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1222 ATPase associated with various cellular activities, AAA_5
YP_997122.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_1590 GCN5-related N-acetyltransferase
YP_997123.1	KEGG: rfr:Rfer_1591 hypothetical protein
YP_997124.1	PFAM: surface antigen (D15); KEGG: rfr:Rfer_1592 surface antigen (D15)
YP_997125.1	PFAM: protein of unknown function DUF490; KEGG: rfr:Rfer_1593 protein of unknown function DUF490
YP_997127.1	KEGG: rfr:Rfer_0459 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_997128.1	PFAM: FAD linked oxidase domain protein; KEGG: reh:H16_B1827 FAD/FMN-containing dehydrogenase
YP_997129.1	KEGG: reh:H16_B1828 ABC-type transporter, periplasmic component: POPT family
YP_997130.1	KEGG: reh:H16_B1829 ABC-type transporter, ATPase component: POPT family; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase
YP_997131.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B1830 ABC-type transporter, duplicated permease domains
YP_997132.1	PFAM: dihydrodipicolinate synthetase; KEGG: reh:H16_B1831 dihydrodipicolinate synthase (DapA)
YP_997133.1	PFAM: regulatory proteins, IclR; KEGG: reh:H16_B1833 transcriptional regulator, IclR-family
YP_997134.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_997135.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_997136.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: pol:Bpro_2177 transcriptional regulator, BadM/Rrf2 family
YP_997137.1	TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rfr:Rfer_2177 cysteine desulfurase IscS
YP_997138.1	TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: rfr:Rfer_2178 FeS cluster assembly scaffold IscU
YP_997139.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: pol:Bpro_2180 iron-sulfur cluster assembly protein IscA
YP_997140.1	TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: rfr:Rfer_2180 co-chaperone Hsc20
YP_997141.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_997142.1	TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: rfr:Rfer_2182 ferredoxin, 2Fe-2S type
YP_997143.1	KEGG: pol:Bpro_2184 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease
YP_997145.1	KEGG: rme:Rmet_0557 NAD-dependent formate dehydrogenase delta subunit
YP_997146.1	TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; KEGG: reu:Reut_A0620 formate dehydrogenase, subunit FdhD
YP_997147.1	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bxe:Bxe_A0964 NAD-dependent formate dehydrogenase, alpha subunit
YP_997148.1	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: reh:H16_A0641 NAD-dependent formate dehydrogenase beta subunit
YP_997149.1	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: rme:Rmet_0553 NADH dehydrogenase (ubiquinone), 24 kDa subunit
YP_997150.1	PFAM: major facilitator superfamily MFS_1; KEGG: aci:ACIAD2100 putative permease (MFS superfamily)
YP_997151.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_4560 transcriptional regulator, LysR family
YP_997152.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:bll6372 probable short-chain dehydrogenase
YP_997153.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bch:Bcen2424_4718 transcriptional regulator, LysR family
YP_997154.1	KEGG: bxe:Bxe_C0626 putative methyltransferase
YP_997155.1	PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0832 lytic transglycosylase, catalytic
YP_997156.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_997157.1	hydrolyzes diadenosine polyphosphate
YP_997158.1	PFAM: protein of unknown function DUF1568; KEGG: rfr:Rfer_2932 protein of unknown function DUF1568
YP_997159.1	PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rfr:Rfer_2933 glutamate synthase (ferredoxin)
YP_997160.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_997161.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0793 ABC transporter related
YP_997162.1	PFAM: protein of unknown function DUF140; KEGG: pol:Bpro_0794 protein of unknown function DUF140
YP_997163.1	PFAM: Mammalian cell entry related domain protein; KEGG: rfr:Rfer_2937 mammalian cell entry related
YP_997164.1	PFAM: VacJ family lipoprotein; KEGG: rfr:Rfer_2938 VacJ-like lipoprotein
YP_997165.1	PFAM: toluene tolerance family protein; KEGG: rfr:Rfer_2063 toluene tolerance
YP_997166.1	KEGG: rfr:Rfer_2940 sulfate transporter/antisigma-factor antagonist STAS
YP_997168.1	PFAM: regulatory proteins, IclR; KEGG: reu:Reut_C5934 regulatory protein, IclR
YP_997169.1	KEGG: reu:Reut_C5933 hypothetical protein
YP_997170.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_C5932 hypothetical protein
YP_997171.1	PFAM: Endoribonuclease L-PSP; KEGG: reu:Reut_C5931 endoribonuclease L-PSP
YP_997172.1	PFAM: amidohydrolase 2; KEGG: reu:Reut_C5930 amidohydrolase 2
YP_997173.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reu:Reut_C5929 5-carboxymethyl-2-hydroxymuconate delta-isomerase
YP_997174.1	KEGG: reu:Reut_C5928 hydratase/decarboxylase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase
YP_997176.1	KEGG: reu:Reut_B5203 CoA-binding
YP_997177.1	PFAM: carboxyl transferase; KEGG: reu:Reut_B4463 propionyl-CoA carboxylase
YP_997178.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reu:Reut_B4462 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal
YP_997179.1	PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rme:Rmet_1724 carbamoyl-phosphate synthase L chain, ATP-binding
YP_997180.1	PFAM: protein of unknown function DUF1446; KEGG: rme:Rmet_1725 protein of unknown function DUF1446
YP_997181.1	PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_C0253 metallo-beta-lactamase family protein
YP_997183.1	KEGG: ecc:c5379 hypothetical protein
YP_997184.1	KEGG: xft:PD2073 hypothetical protein
YP_997185.1	TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: xfa:XF2728 type I restriction-modification system DNA methylase
YP_997186.1	KEGG: tde:TDE0367 hypothetical protein
YP_997187.1	PFAM: restriction modification system DNA specificity domain; KEGG: hpj:jhp0726 putative type I restriction enzyme (specificity subunit)
YP_997188.1	KEGG: xfa:XF2725 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_997189.1	PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_1898 major facilitator superfamily
YP_997191.1	PFAM: CopG domain protein DNA-binding domain protein; KEGG: xac:XAC2429 hypothetical protein
YP_997192.1	PFAM: plasmid stabilization system; KEGG: xfa:XF2074 hypothetical protein
YP_997193.1	SMART: helix-turn-helix domain protein; KEGG: sat:SYN_02736 helix-turn-helix DNA binding protein
YP_997195.1	PFAM: O-methyltransferase domain protein; KEGG: mxa:MXAN_5185 putative O-methyltransferase
YP_997196.1	PFAM: AMP-dependent synthetase and ligase; Anthranilate synthase component I and chorismate binding protein; KEGG: plu:plu2324 unnamed protein product; N-terminal region highly similar Irp5 protein and C-terminal region similar to Irp9 protein of Yersinia enterocolitica
YP_997197.1	PFAM: Thioesterase; KEGG: pst:PSPTO_2598 yersiniabactin synthetase, thioesterase component
YP_997198.1	TIGRFAM: thiazolinyl imide reductase; PFAM: oxidoreductase domain protein; KEGG: psp:PSPPH_2900 yersiniabactin synthetase, thiazolinyl reductase component Irp3
YP_997199.1	PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; Non-ribosomal peptide synthetase; KR; KEGG: psp:PSPPH_2899 yersiniabactin polyketide/non-ribosomal peptide synthetase
YP_997200.1	PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_2601 membrane protein, putative
YP_997201.1	TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 12; Non-ribosomal peptide synthetase; KEGG: pst:PSPTO_2602 yersiniabactin non-ribosomal peptide synthetase
YP_997202.1	KEGG: rso:RSc1812 hypothetical protein
YP_997203.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: yps:YPTB1597 transcriptional regulator YbtA
YP_997204.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rru:Rru_A2337 TonB-dependent receptor
YP_997205.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ype:YPO1913 lipoprotein inner membrane ABC-transporter
YP_997206.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ecp:ECP_1939 inner membrane ABC-transporter YbtQ
YP_997207.1	PFAM: Thioesterase; KEGG: rpc:RPC_3033 thioesterase
YP_997208.1	PFAM: 4'-phosphopantetheinyl transferase; KEGG: mxa:MXAN_3485 putative 4'-phosphopantetheinyl transferase
YP_997209.1	KEGG: btk:BT9727_3378 hypothetical protein
YP_997210.1	PFAM: transcription activator, effector binding; KEGG: bba:Bd0811 transcriptional regulator, AraC family
YP_997211.1	PFAM: Integrase, catalytic region; KEGG: rme:Rmet_1301 integrase, catalytic region
YP_997212.1	KEGG: xcb:XC_0073 hypothetical protein
YP_997213.1	PFAM: protein of unknown function DUF159; KEGG: net:Neut_2613 protein of unknown function DUF159
YP_997214.1	PFAM: SEC-C motif domain protein; KEGG: sus:Acid_5736 sec-C motif domain protein
YP_997217.1	PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro02424 multidrug resistance transporter, MFS superfamily
YP_997218.1	KEGG: pol:Bpro_2411 extracellular ligand-binding receptor
YP_997219.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rru:Rru_A3368 transcriptional regulator, LysR family
YP_997220.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bbr:BB1748 short chain dehydrogenase
YP_997221.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_997222.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein
YP_997223.1	PFAM: type III effector Hrp-dependent outers; KEGG: pol:Bpro_4878 type III effector Hrp-dependent outers
YP_997224.1	KEGG: pol:Bpro_4877 class II aldolase/adducin-like
YP_997225.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rfr:Rfer_0443 hydroxypyruvate isomerase
YP_997226.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4142 hypothetical protein
YP_997227.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_997228.1	KEGG: pol:Bpro_2747 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop
YP_997229.1	TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein
YP_997230.1	PFAM: SpoVT/AbrB domain protein; KEGG: rfr:Rfer_3405 transcriptional regulator/antitoxin, MazE
YP_997231.1	KEGG: pol:Bpro_1006 Asp/Glu racemase
YP_997232.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1007 transcriptional regulator, GntR family
YP_997233.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1008 binding-protein-dependent transport systems inner membrane component
YP_997234.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1009 binding-protein-dependent transport systems inner membrane component
YP_997235.1	KEGG: pol:Bpro_1010 twin-arginine translocation pathway signal
YP_997236.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1011 ABC transporter related
YP_997237.1	KEGG: pol:Bpro_0202 hypothetical protein
YP_997238.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_997239.1	KEGG: pol:Bpro_0204 hypothetical protein
YP_997240.1	PFAM: glycosyl transferase, family 2; KEGG: bte:BTH_I0991 lipopolysaccharide core biosynthesis glycosyltransferase
YP_997241.1	PFAM: O-antigen polymerase; KEGG: msu:MS0243 RfaL protein
YP_997242.1	PFAM: glycosyl transferase, group 1; KEGG: bth:BT2148 glycosyltransferase
YP_997243.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: pol:Bpro_0206 2-nitropropane dioxygenase, NPD
YP_997244.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_3196 putative transposase
YP_997245.1	KEGG: cje:Cj0008 hypothetical protein
YP_997246.1	KEGG: pol:Bpro_3196 putative transposase
YP_997247.1	KEGG: pol:Bpro_3196 putative transposase
YP_997248.1	PFAM: protein of unknown function DUF433; KEGG: xfa:XF2030 hypothetical protein
YP_997249.1	KEGG: xfa:XF2029 hypothetical protein
YP_997252.1	KEGG: net:Neut_1256 ISRm2011-2 transposase protein
YP_997259.1	KEGG: gme:Gmet_1475 YD repeat protein
YP_997261.1	PFAM: regulatory proteins, IclR; KEGG: rme:Rmet_1817 transcriptional regulator, IclR family
YP_997262.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_1813 L-carnitine dehydratase/bile acid-inducible protein F
YP_997263.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rme:Rmet_1816 acyl-CoA dehydrogenase-like protein
YP_997264.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A2075 probable extra-cytoplasmic solute receptor
YP_997265.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_1815 uncharacterized protein UPF0065
YP_997266.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rme:Rmet_1814 acyl-CoA dehydrogenase-like protein
YP_997267.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_B3877 zinc-containing alcohol dehydrogenase superfamily
YP_997268.1	PFAM: protein of unknown function DUF81; KEGG: ppu:PP_1029 hypothetical protein
YP_997269.1	KEGG: bbr:BB2765 hypothetical protein
YP_997270.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B2005 probable extra-cytoplasmic solute receptor
YP_997271.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppu:PP_3560 transcriptional regulator, LysR family
YP_997273.1	PFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: rsp:RSP_3145 putative tartrate dehydratase beta subunit
YP_997274.1	TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; KEGG: jan:Jann_3970 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha protein
YP_997275.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: rsp:RSP_3147 putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit
YP_997276.1	KEGG: jan:Jann_3968 succinate dehydrogenase, cytochrome b subunit
YP_997277.1	KEGG: jan:Jann_3967 hypothetical protein
YP_997278.1	TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: rsp:RSP_3150 succinate dehydrogenase/fumarate reductase Fe-S protein subunit
YP_997279.1	KEGG: rsp:RSP_3155 thiamine pyrophosphate-requiring enzyme
YP_997280.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: gme:Gmet_1523 acyl-CoA dehydrogenase-like
YP_997281.1	PFAM: regulatory proteins, IclR; KEGG: eba:p2A140 putative IclR-family regulatory protein
YP_997282.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A0091 probable extra-cytoplasmic solute receptor
YP_997283.1	PFAM: adenosine/AMP deaminase; KEGG: bch:Bcen2424_5260 adenosine deaminase
YP_997284.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B0387 transcriptional regulator, LysR family
YP_997285.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_3196 putative transposase
YP_997286.1	KEGG: pol:Bpro_3196 putative transposase
YP_997287.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_997288.1	PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911
YP_997289.1	PFAM: Integrase, catalytic region; KEGG: psb:Psyr_3810 integrase, catalytic region
YP_997290.1	KEGG: pol:Bpro_3038 integrase, catalytic region
YP_997292.1	KEGG: vpa:VPA0018 hypothetical protein
YP_997293.1	PFAM: protein of unknown function DUF214; KEGG: bch:Bcen2424_6004 protein of unknown function DUF214
YP_997294.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: net:Neut_0628 ABC transporter-related protein
YP_997295.1	KEGG: vpa:VPA0014 hypothetical protein
YP_997296.1	PFAM: thioesterase superfamily protein; KEGG: mca:MCA1224 thioesterase family protein
YP_997298.1	PFAM: Integrase, catalytic region; KEGG: rme:Rmet_1301 integrase, catalytic region
YP_997299.1	PFAM: beta-ketoacyl synthase; KEGG: ecs:ECs1289 putative 3-oxoacyl-[acyl-carrier-protein] synthase synthase
YP_997300.1	PFAM: beta-ketoacyl synthase; KEGG: ece:Z1550 hypothetical protein
YP_997301.1	KEGG: ece:Z1551 hypothetical protein
YP_997303.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ecs:ECs1292 putative ATP binding protein of ABC transporter
YP_997304.1	KEGG: ecs:ECs1293 hypothetical protein
YP_997305.1	PFAM: protein of unknown function DUF214; KEGG: ecs:ECs1294 hypothetical membrane protein
YP_997306.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bha:BH0938 enoyl-(acyl carrier protein) reductase
YP_997307.1	KEGG: ecs:ECs1295 hypothetical protein
YP_997308.1	KEGG: ecs:ECs1296 hypothetical protein
YP_997309.1	PFAM: acyl transferase domain protein; KEGG: deh:cbdb_A1204 malonyl CoA-acyl carrier protein transacylase
YP_997311.1	TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: ecs:ECs1284 putative holo-[acyl-carrier protein] synthase
YP_997313.1	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_4615 magnesium and cobalt transport protein CorA
YP_997314.1	PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4543 AMP-dependent synthetase and ligase
YP_997315.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_2204 short-chain dehydrogenase/reductase SDR
YP_997316.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bxe:Bxe_C1181 ABC Fe+3 siderophore transporter, periplasmic ligand binding protein
YP_997317.1	TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin
YP_997318.1	KEGG: bch:Bcen2424_3760 protein of unknown function DUF126
YP_997319.1	PFAM: protein of unknown function DUF521; KEGG: bxe:Bxe_B1424 hypothetical protein
YP_997321.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: rfr:Rfer_2997 three-deoxy-D-manno-octulosonic-acid transferase-like
YP_997322.1	PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rfr:Rfer_2999 phosphomannomutase
YP_997323.1	PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: pol:Bpro_1638 transcriptional regulator, AraC family
YP_997324.1	KEGG: pol:Bpro_1637 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase
YP_997325.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_3002 protein of unknown function DUF6, transmembrane
YP_997326.1	KEGG: pol:Bpro_3555 hypothetical protein
YP_997327.1	KEGG: pol:Bpro_3559 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_997328.1	PFAM: Ankyrin; KEGG: cch:Cag_1796 ankyrin
YP_997329.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_997330.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_997331.1	PFAM: protein of unknown function DUF805; KEGG: pol:Bpro_0755 protein of unknown function DUF805
YP_997332.1	KEGG: mfa:Mfla_0760 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase
YP_997333.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_997334.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rfr:Rfer_0479 senescence marker protein-30 (SMP-30)
YP_997335.1	KEGG: rso:RS03064 hypothetical protein
YP_997336.1	catalyzes the formation of protocatechuate from 4-hydroxybenzoate
YP_997337.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bja:bll2336 transcriptional regulatory protein
YP_997338.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: psb:Psyr_3075 type I secretion membrane fusion protein, HlyD
YP_997339.1	KEGG: plu:plu0634 unnamed protein product; similar to toxin secretion ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase
YP_997340.1	PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RSc0246 putative calcium binding hemolysin protein
YP_997341.1	KEGG: nme:NMB1740 hypothetical protein
YP_997343.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_997344.1	KEGG: bbr:BB2263 thiolase
YP_997345.1	PFAM: protein of unknown function DUF35; KEGG: bbr:BB2262 hypothetical protein
YP_997346.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB2261 probable enoyl-CoA hydratase/isomerase
YP_997347.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1674 hypothetical protein
YP_997348.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3493 ABC transporter related
YP_997350.1	TIGRFAM: outer membrane protein; KEGG: pen:PSEEN0746 hypothetical protein
YP_997352.1	PFAM: ANTAR domain protein; KEGG: rfr:Rfer_2553 response regulator receiver and ANTAR domain protein
YP_997353.1	KEGG: pol:Bpro_3267 twin-arginine translocation pathway signal
YP_997354.1	TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3268 nitrate transport permease
YP_997355.1	KEGG: rfr:Rfer_2556 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase
YP_997356.1	TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rfr:Rfer_2557 nitrite reductase (NAD(P)H) large subunit, NirB
YP_997357.1	TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3278 nitrite reductase (NAD(P)H) large subunit, NirD
YP_997358.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3279 molybdopterin oxidoreductase
YP_997359.1	KEGG: reh:H16_B1262 hypothetical protein
YP_997360.1	PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: bja:bll6350 similar to tagatose-1,6-diphosphate aldolase
YP_997361.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1032 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_997362.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0081 putative ABC transporter permease
YP_997363.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yps:YPTB0869 putative amino acid ABC transporter, ATP-binding protein
YP_997364.1	PFAM: extracellular solute-binding protein, family 3; KEGG: sme:SMa0506 putative ABC transporter, periplasmic solute-binding protein, family 3
YP_997365.1	PFAM: sugar isomerase (SIS); KEGG: ccr:CC1297 SIS domain protein
YP_997366.1	KEGG: sma:SAV3100 hypothetical protein
YP_997367.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_997368.1	PFAM: pseudouridine synthase; KEGG: pol:Bpro_2906 pseudouridine synthase
YP_997369.1	KEGG: hch:HCH_03902 hypothetical protein
YP_997370.1	KEGG: pol:Bpro_1906 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase
YP_997371.1	KEGG: pol:Bpro_1905 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase
YP_997372.1	KEGG: eba:ebA5346 transposase (IS4), fragment
YP_997373.1	PFAM: transposase, IS4 family protein; KEGG: sdn:Sden_1172 transposase, IS4
YP_997374.1	KEGG: sus:Acid_1682 superfamily I DNA and RNA helicases and helicase subunits-like protein
YP_997375.1	KEGG: deh:cbdb_A109 hypothetical protein
YP_997376.1	TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; Prophage CP4-57 regulatory; KEGG: pau:PA14_15570 hypothetical protein
YP_997377.1	KEGG: net:Neut_2605 UvrD/REP helicase
YP_997378.1	KEGG: mca:MCA1884 hypothetical protein
YP_997379.1	PFAM: transposase, IS4 family protein; KEGG: nmu:Nmul_A2650 transposase, IS4
YP_997380.1	KEGG: nmu:Nmul_A2649 IS298, transposase OrfA
YP_997381.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pol:Bpro_2447 CMP/dCMP deaminase, zinc-binding
YP_997382.1	KEGG: pol:Bpro_2446 hypothetical protein
YP_997383.1	TIGRFAM: ribonuclease, Rne/Rng family; SMART: RNA binding S1 domain protein; KEGG: rfr:Rfer_2082 ribonuclease, Rne/Rng family
YP_997384.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pol:Bpro_1974 maf protein
YP_997385.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_997386.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pol:Bpro_1972 iojap-related protein
YP_997387.1	KEGG: reh:H16_B0324 fumarylacetoacetate hydrolase
YP_997388.1	KEGG: mca:MCA3011 hypothetical protein
YP_997389.1	PFAM: AAA-4 family protein; KEGG: mca:MCA3010 hypothetical protein
YP_997390.1	KEGG: mca:MCA3009 PHP N-terminal domain protein
YP_997391.1	KEGG: mca:MCA3008 hypothetical protein
YP_997392.1	PFAM: transposase, IS4 family protein; KEGG: nmu:Nmul_A2650 transposase, IS4
YP_997393.1	KEGG: nmu:Nmul_A2649 IS298, transposase OrfA
YP_997394.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_3196 putative transposase
YP_997395.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_0509 periplasmic sensor signal transduction histidine kinase
YP_997396.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0510 two component transcriptional regulator, winged helix family
YP_997397.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0209 major facilitator superfamily MFS_1
YP_997398.1	PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_0210 peptidase M48, Ste24p
YP_997399.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_997400.1	forms a direct contact with the tRNA during translation
YP_997401.1	KEGG: pol:Bpro_4111 hypothetical protein
YP_997402.1	PFAM: protein of unknown function DUF583; KEGG: pol:Bpro_4110 protein of unknown function DUF583
YP_997403.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_997404.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_997405.1	PFAM: peptidase M23B; KEGG: rfr:Rfer_0727 peptidase M23B
YP_997406.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_997407.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1086 transcriptional regulator, LysR family
YP_997408.1	KEGG: rfr:Rfer_1085 hypothetical protein
YP_997409.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5278 uncharacterized protein UPF0065
YP_997410.1	PFAM: Septum formation initiator; KEGG: pol:Bpro_3185 septum formation initiator
YP_997411.1	PFAM: enolase; KEGG: rfr:Rfer_2650 phosphopyruvate hydratase
YP_997412.1	KEGG: pol:Bpro_3183 protein of unknown function DUF1330
YP_997413.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_997414.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_997415.1	TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: rfr:Rfer_2647 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
YP_997416.1	catalyzes the formation of dUMP from dUTP
YP_997417.1	PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3177 17 kDa surface antigen
YP_997418.1	KEGG: rfr:Rfer_2645 fkbp-type peptidyl-prolyl cis-trans isomerase
YP_997419.1	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: rfr:Rfer_2644 cupin 4
YP_997420.1	KEGG: pol:Bpro_1834 hypothetical protein
YP_997421.1	KEGG: dar:Daro_2765 extracellular ligand-binding receptor
YP_997422.1	PFAM: protein of unknown function DUF498; KEGG: rfr:Rfer_1910 protein of unknown function DUF498
YP_997423.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_997424.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_997425.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_997426.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: pol:Bpro_2193 MoeA-like, domain I and II
YP_997427.1	TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rfr:Rfer_1916 molybdopterin converting factor, subunit 1
YP_997428.1	PFAM: Extracellular ligand-binding receptor; KEGG: bja:bll3426 ABC transporter substrate-binding protein
YP_997429.1	PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: sil:SPOA0131 aromatic 1,2-dioxygenase, beta subunit
YP_997430.1	PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: sil:SPOA0131 aromatic 1,2-dioxygenase, beta subunit
YP_997431.1	PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: bja:blr3400 putative oxidoreductase
YP_997432.1	PFAM: Extracellular ligand-binding receptor; KEGG: bja:blr3432 putative branched-chain amino acid transporter
YP_997433.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO1445 oxidoreductase, short chain dehydrogenase/reductase family
YP_997434.1	PFAM: cyclase family protein; KEGG: sil:SPO1446 cyclase, putative
YP_997435.1	PFAM: short-chain dehydrogenase/reductase SDR; protein of unknown function DUF35; KEGG: sil:SPO1447 oxidoreductase, short chain dehydrogenase/reductase family
YP_997436.1	KEGG: sil:SPO1448 hypothetical protein
YP_997437.1	PFAM: AMP-dependent synthetase and ligase; KEGG: jan:Jann_1334 AMP-dependent synthetase and ligase
YP_997438.1	PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: sil:SPO1450 aromatic 1,2-dioxygenase, beta subunit
YP_997439.1	PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: bja:blr3400 putative oxidoreductase
YP_997440.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bja:blr3399 vanillate O-demethylase oxidoreductase
YP_997441.1	KEGG: pol:Bpro_2049 acetate--CoA ligase
YP_997442.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bcz:BCZK0579 ribose ABC transporter, ribose-binding protein
YP_997443.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sme:SMb20853 putative sugar-alcohol dehydrogenase, probably galactitol-1-phosphate 5-dehydrogenase protein
YP_997444.1	PFAM: carbohydrate kinase, FGGY; KEGG: sme:SMb20852 putative sugar kinase protein
YP_997445.1	PFAM: putative sugar-binding domain protein; KEGG: sme:SMb20851 putative transcriptional regulator, SorC family protein
YP_997446.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6567 ABC transporter ATP binding protein
YP_997447.1	PFAM: inner-membrane translocator; KEGG: ssp:SSP1393 ribose ABC transporter
YP_997448.1	KEGG: atc:AGR_L_76 putative deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
YP_997449.1	PFAM: aldehyde dehydrogenase; KEGG: atc:AGR_L_75 aldehyde dehydrogenase
YP_997450.1	KEGG: sfu:Sfum_0218 hypothetical protein
YP_997451.1	KEGG: hne:HNE_1427 hypothetical protein
YP_997452.1	KEGG: eba:ebA2464 hypothetical protein
YP_997453.1	KEGG: net:Neut_1256 ISRm2011-2 transposase protein
YP_997455.1	KEGG: eba:ebA2464 hypothetical protein
YP_997456.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rfr:Rfer_2249 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_997457.1	PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_3065 histone-like DNA-binding protein
YP_997458.1	KEGG: pol:Bpro_3066 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_997459.1	KEGG: rfr:Rfer_2245 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_997460.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_997461.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A2384 probable extra-cytoplasmic solute receptor
YP_997462.1	KEGG: pol:Bpro_3073 hypothetical protein
YP_997463.1	KEGG: csa:Csal_0217 glyoxalase I; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_997464.1	KEGG: dar:Daro_0024 hypothetical protein
YP_997465.1	PFAM: glucose-methanol-choline oxidoreductase; KEGG: bxe:Bxe_A1401 putative 2-keto-gluconate dehydrogenase
YP_997466.1	KEGG: bxe:Bxe_A1400 hypothetical protein
YP_997467.1	PFAM: dihydrodipicolinate synthetase; KEGG: pol:Bpro_2837 dihydrodipicolinate synthetase
YP_997468.1	PFAM: cytochrome c, class I; KEGG: rso:RS03090 putative cytochrome c signal peptide protein
YP_997469.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_2836 mandelate racemase/muconate lactonizing enzyme
YP_997470.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_997471.1	KEGG: ret:RHE_PC00149 putative sugar ABC transporter, substrate-binding protein
YP_997472.1	PFAM: inner-membrane translocator; KEGG: rle:pRL100395 putative permease component of ABC transporter
YP_997473.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmu:PM1251 ribose transport ATP-binding protein
YP_997474.1	KEGG: reh:H16_B1217 hypothetical protein
YP_997475.1	KEGG: reh:H16_A3012 gluconolactonase
YP_997476.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sme:SMb20664 putative transcriptional regulator, GntR family protein
YP_997477.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_997478.1	PFAM: OsmC family protein; KEGG: lic:LIC13395 hypothetical protein
YP_997479.1	KEGG: dar:Daro_0255 putative phenylacetate-CoA ligase
YP_997480.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_0219 ABC transporter-related protein
YP_997481.1	KEGG: rme:Rmet_0218 putative branched-chain amino acid transport system substrate-binding protein
YP_997482.1	PFAM: inner-membrane translocator; KEGG: rme:Rmet_0217 inner-membrane translocator
YP_997483.1	PFAM: inner-membrane translocator; KEGG: reu:Reut_A0262 inner-membrane translocator
YP_997484.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A0261 ABC transporter related
YP_997485.1	PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A0285 long-chain acyl-CoA synthetase (AMP-forming)
YP_997486.1	KEGG: syn:sll0811 hypothetical protein
YP_997487.1	KEGG: rle:pRL120169 putative permease component of ABC transporter
YP_997488.1	PFAM: beta-lactamase; KEGG: rpd:RPD_0253 beta-lactamase
YP_997489.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_997490.1	KEGG: pol:Bpro_4682 succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein
YP_997491.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_997492.1	helicase involved in DNA repair and perhaps also replication
YP_997493.1	PFAM: NLP/P60 protein; KEGG: rfr:Rfer_0741 NLP/P60
YP_997494.1	PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: lxx:Lxx10290 transcriptional regulator
YP_997495.1	KEGG: gka:GK3241 hypothetical protein
YP_997496.1	PFAM: Na+/solute symporter; KEGG: bsu:BG13069 sodium:solute symporter
YP_997497.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL4638 conserved hypothetical protein; putative glyoxalase/bleomycin resistance protein/dioxygenase domain
YP_997498.1	PFAM: Endoribonuclease L-PSP; KEGG: yps:YPTB3427 putative translational inhibitor protein
YP_997499.1	PFAM: dihydrodipicolinate synthetase; KEGG: lxx:Lxx10270 dihydrodipicolinate synthase
YP_997500.1	PFAM: FAD dependent oxidoreductase; KEGG: rle:RL4485 putative ferredoxin containing dehydrogenase
YP_997501.1	KEGG: pol:Bpro_4399 putative sarcosine oxidase alpha subunit
YP_997502.1	PFAM: HI0933 family protein; BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: lxx:Lxx10220 opine oxidase subunit A
YP_997503.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_997504.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_2430 protein of unknown function DUF6, transmembrane
YP_997505.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: pol:Bpro_2429 GTP-binding protein TypA
YP_997506.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_997507.1	PFAM: ribosome-binding factor A; KEGG: pol:Bpro_2427 ribosome-binding factor A
YP_997508.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_997509.1	KEGG: pol:Bpro_2425 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH, type 1, domain protein; NusA N-terminal domain protein; SMART: KH domain protein
YP_997510.1	PFAM: protein of unknown function DUF150; KEGG: rfr:Rfer_2132 protein of unknown function DUF150
YP_997511.1	catalyzes the formation of malonyl-CoA from malonate and CoA
YP_997512.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2092 twin-arginine translocation pathway signal
YP_997513.1	PFAM: Malonyl-CoA decarboxylase; KEGG: pol:Bpro_2091 malonyl-CoA decarboxylase
YP_997514.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2090 transcriptional regulator, GntR family
YP_997515.1	PFAM: protein of unknown function DUF156; KEGG: rle:RL1176 hypothetical protein
YP_997516.1	membrane protein conferring nickel and cobalt resistance
YP_997517.1	PFAM: GTP-binding protein, HSR1-related; KEGG: rfr:Rfer_1388 GTP-binding
YP_997518.1	TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: pol:Bpro_0675 glucosamine--fructose-6-phosphate aminotransferase, isomerizing
YP_997519.1	PFAM: protein of unknown function UPF0074; regulatory protein, ArsR; regulatory proteins, IclR; KEGG: reh:H16_B0916 transcriptional regulator, IclR-family
YP_997520.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: hne:HNE_3375 enoyl-CoA hydratase/isomerase family protein
YP_997521.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_997522.1	PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911
YP_997523.1	PFAM: Integrase, catalytic region; KEGG: psb:Psyr_3810 integrase, catalytic region
YP_997524.1	PFAM: helicase domain protein; KEGG: mca:MCA3005 ATP-dependent RNA helicase, DEAD/DEAH box family
YP_997525.1	PFAM: phage integrase family protein; KEGG: bam:Bamb_0912 phage integrase family protein
YP_997526.1	KEGG: pol:Bpro_4981 hypothetical protein
YP_997529.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: reh:H16_B0739 flavodoxin reductase (ferredoxin-NADPH reductase) family 1
YP_997530.1	PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: mmc:Mmcs_1641 aromatic-ring-hydroxylating dioxygenase, beta subunit
YP_997531.1	PFAM: transposase, IS4 family protein; KEGG: eba:ebA6355 transposase, IS4 family
YP_997533.1	KEGG: dar:Daro_2227 hypothetical protein
YP_997534.1	KEGG: dar:Daro_2226 hypothetical protein
YP_997535.1	KEGG: dar:Daro_2225 hypothetical protein
YP_997536.1	TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: reu:Reut_B5693 4-oxalocrotonate tautomerase
YP_997537.1	catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate
YP_997538.1	catalyzes the formation of acetyl-CoA from acetalaldehyde
YP_997539.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB4048 hypothetical protein
YP_997540.1	PFAM: Hydratase/decarboxylase; KEGG: reu:Reut_B5692 4-oxalocrotonate decarboxylase
YP_997541.1	PFAM: Hydratase/decarboxylase; KEGG: reu:Reut_B5691 4-oxalocrotonate decarboxylase
YP_997542.1	PFAM: alpha/beta hydrolase fold; KEGG: reu:Reut_B5690 alpha/beta hydrolase fold
YP_997543.1	PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B5689 betaine-aldehyde dehydrogenase
YP_997544.1	PFAM: protein of unknown function DUF336; KEGG: reu:Reut_B5688 protein of unknown function DUF336
YP_997545.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5687 catechol 2,3-dioxygenase
YP_997546.1	PFAM: ferredoxin; KEGG: reu:Reut_B5686 ferredoxin
YP_997547.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: bur:Bcep18194_B2966 oxidoreductase FAD/NAD(P)-binding
YP_997548.1	PFAM: Phenol hydroxylase conserved region; KEGG: rme:Rmet_1327 phenol hydroxylase conserved region
YP_997549.1	PFAM: methane/phenol/toluene hydroxylase; YHS domain protein; KEGG: reu:Reut_B5683 methane/phenol/toluene hydroxylase:YHS
YP_997550.1	PFAM: monooxygenase component MmoB/DmpM; KEGG: reu:Reut_B5682 monooxygenase component MmoB/DmpM
YP_997551.1	PFAM: methane/phenol/toluene hydroxylase; KEGG: reu:Reut_B5681 methane/phenol/toluene hydroxylase
YP_997552.1	PFAM: Phenol hydroxylase subunit; KEGG: reu:Reut_B5680 phenol hydroxylase subunit
YP_997553.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; Activator of aromatic catabolism; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: reu:Reut_B5671 helix-turn-helix, fis-type
YP_997554.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: reu:Reut_B5670 regulatory protein GntR, HTH:GntR, C-terminal
YP_997555.1	PFAM: SNF2-related protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: mca:MCA3005 ATP-dependent RNA helicase, DEAD/DEAH box family
YP_997556.1	Catalyzes the transfer of electrons from NADH to quinone
YP_997557.1	KEGG: pol:Bpro_3244 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_997558.1	KEGG: pol:Bpro_3245 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I)
YP_997559.1	PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rfr:Rfer_1503 NADH-ubiquinone oxidoreductase, chain 4L
YP_997560.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: rfr:Rfer_1502 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
YP_997561.1	Catalyzes the transfer of electrons from NADH to quinone
YP_997562.1	PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: pol:Bpro_3249 respiratory-chain NADH dehydrogenase, subunit 1
YP_997563.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_997564.1	KEGG: pol:Bpro_3251 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
YP_997565.1	TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: rfr:Rfer_1497 NADH-quinone oxidoreductase, E subunit
YP_997566.1	Catalyzes the transfer of electrons from NADH to quinone
YP_997567.1	KEGG: rfr:Rfer_1495 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit
YP_997568.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_997569.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: rfr:Rfer_1493 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_997570.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pol:Bpro_3257 preprotein translocase, SecG subunit
YP_997571.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_997572.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_1490 alcohol dehydrogenase, zinc-binding
YP_997573.1	PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: rfr:Rfer_1489 3' exoribonuclease
YP_997574.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_997575.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_997576.1	KEGG: pol:Bpro_0847 hypothetical protein
YP_997577.1	KEGG: pol:Bpro_2883 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein
YP_997578.1	TIGRFAM: type IV pilus modification protein PilV; KEGG: rfr:Rfer_2660 methylation
YP_997579.1	KEGG: rfr:Rfer_2661 putative transmembrane protein
YP_997580.1	KEGG: rfr:Rfer_2662 putative transmembrane protein
YP_997581.1	KEGG: rfr:Rfer_2663 putative type-4 fimbrial biogenesis PilY1-related signal peptide protein
YP_997582.1	KEGG: rfr:Rfer_2664 methylation
YP_997583.1	KEGG: rfr:Rfer_2665 methylation
YP_997584.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pol:Bpro_2525 alpha/beta hydrolase fold-3
YP_997585.1	PFAM: GCN5-related N-acetyltransferase; thioesterase superfamily protein; KEGG: pol:Bpro_2524 4-hydroxybenzoyl-CoA thioesterase
YP_997586.1	PFAM: amino acid permease-associated region; KEGG: bte:BTH_I0764 amino acid permease
YP_997587.1	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: reh:H16_A3607 transcriptional regulator, MerR-family
YP_997588.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_2564 acyl-CoA dehydrogenase-like
YP_997589.1	probable dehydrogenase
YP_997590.1	KEGG: xom:XOO_2345 transposase
YP_997591.1	TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: pol:Bpro_0904 para-aminobenzoate synthase, component I
YP_997594.1	PFAM: protein of unknown function DUF1289; KEGG: pol:Bpro_4664 protein of unknown function DUF1289
YP_997595.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: eca:ECA0822 putative carbon-nitrogen hydrolase
YP_997596.1	KEGG: mes:Meso_0043 hypothetical protein
YP_997597.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4609 uncharacterized protein UPF0065
YP_997598.1	KEGG: sma:SAV2223 protoporphyrinogen oxidase
YP_997599.1	KEGG: plu:plu0453 hypothetical protein
YP_997600.1	KEGG: plu:plu3931 hypothetical protein
YP_997604.1	PFAM: plasmid stabilization system; KEGG: sme:SMb20063 hypothetical protein
YP_997605.1	PFAM: ParB domain protein nuclease; KEGG: sth:STH3332 ParBc, ParB-like nuclease domain
YP_997606.1	PFAM: Resolvase, N-terminal domain; KEGG: son:SOA0172 site-specific recombinase, resolvase family
YP_997608.1	KEGG: rpd:RPD_2231 hypothetical protein
YP_997612.1	PFAM: helix-turn-helix domain protein; KEGG: nmu:Nmul_D2814 transcriptional regulator, XRE family
YP_997613.1	KEGG: xfa:XFa0034 hypothetical protein
YP_997614.1	KEGG: rme:Rmet_6343 resolvase-like protein
YP_997615.1	TIGRFAM: outer membrane protein; KEGG: neu:NE0161 hemolysin-type calcium-binding region:RTX N-terminal domain
YP_997616.1	TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: atc:AGR_C_1701 hypothetical protein
YP_997617.1	TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: eba:ebB237 damage inducible-like protein, anti-RelE antitoxin
YP_997619.1	PFAM: SpoVT/AbrB domain protein; KEGG: ppu:PP_0770 PemI-like protein
YP_997620.1	PFAM: PemK family protein; KEGG: xac:XACa0027 plasmid stable inheritance protein K
YP_997621.1	TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: reu:Reut_D6453 RelB antitoxin
YP_997622.1	KEGG: bbr:BB2140 hypothetical protein
YP_997623.1	PFAM: protein of unknown function DUF497; KEGG: yps:YPTB1901 hypothetical protein
YP_997624.1	PFAM: enolase; KEGG: dge:Dgeo_0004 phosphopyruvate hydratase
YP_997625.1	PFAM: aminoglycoside phosphotransferase; KEGG: sal:Sala_1765 aminoglycoside phosphotransferase
YP_997626.1	catalyzes the conversion of salicylyl-CoA to gentisyl-CoA
YP_997627.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dra:DRA0260 branched-chain amino acid transport system ATP-binding protein
YP_997628.1	PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_3208 ABC transporter related
YP_997629.1	PFAM: inner-membrane translocator; KEGG: bja:bll3425 ABC transporter permease protein
YP_997630.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:blr3403 putative 3-oxoacyl-[acyl-carrier-protein] reductase
YP_997632.1	PFAM: regulatory protein, MarR; KEGG: rso:RSc1821 transcription regulator protein
YP_997633.1	PFAM: zinc/iron permease; KEGG: pol:Bpro_1734 zinc/iron permease
YP_997634.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: pol:Bpro_3670 transcriptional regulator, LytR/AlgR family
YP_997635.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_2872 TRAP dicarboxylate transporter-DctM subunit
YP_997636.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rfr:Rfer_2871 tripartite ATP-independent periplasmic transporter, DctQ component
YP_997638.1	PFAM: protein of unknown function DUF497; KEGG: xfa:XF0533 hypothetical protein
YP_997639.1	KEGG: xfa:XF0532 hypothetical protein
YP_997640.1	KEGG: rfr:Rfer_2860 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase
YP_997641.1	TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:ebA2720 molybdenum transport system permease
YP_997642.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: tbd:Tbd_1283 molybdenum ABC transporter, periplasmic binding protein
YP_997643.1	PFAM: fatty acid hydroxylase; KEGG: pol:Bpro_3325 hypothetical protein
YP_997644.1	KEGG: xcv:XCV0600 acyl-carrier-protein S-malonyltransferase
YP_997645.1	PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: bch:Bcen2424_1274 triphosphoribosyl-dephospho-CoA synthase
YP_997646.1	KEGG: xac:XAC0564 phosphoribosyl-dephospho-CoA transferase
YP_997647.1	PFAM: malonate decarboxylase gamma subunit; KEGG: xcb:XC_0575 malonate decarboxylase gamma subunit
YP_997648.1	KEGG: xcb:XC_0574 acetyl-CoA carboxylase beta subunit
YP_997649.1	PFAM: malonate decarboxylase delta subunit; KEGG: xcv:XCV0595 malonate decarboxylase subunit delta
YP_997650.1	KEGG: rfr:Rfer_1843 alpha subunit of malonate decarboxylase
YP_997651.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3983 uncharacterized protein UPF0065
YP_997653.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_3327 transcriptional regulator, GntR family
YP_997654.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_5109 major facilitator superfamily MFS_1
YP_997655.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB3311 LysR-family transcriptional regulator
YP_997656.1	PFAM: aminotransferase, class I and II; KEGG: bbr:BB3570 putative aspartate aminotransferase
YP_997657.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B1822 probable extra-cytoplasmic solute receptor
YP_997658.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4146 uncharacterized protein UPF0065
YP_997659.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: atc:AGR_pAT_470 hypothetical protein
YP_997660.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reh:H16_B2188 transcriptional regulator, LysR-family
YP_997661.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bbr:BB2978 5-oxoprolinase
YP_997662.1	PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2836 major facilitator superfamily (MFS_1) transporter
YP_997663.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bur:Bcep18194_B2837 mandelate racemase/muconate lactonizing enzyme
YP_997664.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bur:Bcep18194_B2838 glucose-methanol-choline oxidoreductase
YP_997665.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sme:SMa1462 putative ABC transport protein
YP_997666.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa1465 putative ABC transporter permease
YP_997667.1	KEGG: sme:SMa1466 probable ABC transporter ATP binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase
YP_997668.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa1467 probable inner-membrane permease
YP_997669.1	PFAM: isochorismatase hydrolase; KEGG: sme:SMa1471 hypothetical protein
YP_997670.1	PFAM: peptidase M24; KEGG: sme:SMa1473 putative aminopeptidase
YP_997671.1	PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: sme:SMa1476 putative AraC-family transcription regulator
YP_997673.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4951 uncharacterized protein UPF0065
YP_997674.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mxa:MXAN_1754 oxidoreductase, short-chain dehydrogenase/reductase family
YP_997675.1	KEGG: nfa:nfa21900 hypothetical protein
YP_997676.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_2358 AMP-dependent synthetase and ligase
YP_997677.1	PFAM: regulatory protein, MarR; KEGG: pol:Bpro_1907 transcriptional regulator, MarR family
YP_997678.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pol:Bpro_1908 oxidoreductase-like
YP_997679.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_1909 ferredoxin
YP_997680.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1911 uncharacterized protein UPF0065
YP_997681.1	KEGG: bpe:BP0683 4,5-dihydroxyphthalate decarboxylase
YP_997682.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_1910 Rieske (2Fe-2S) region
YP_997683.1	TIGRFAM: hemerythrin-like metal-binding protein; KEGG: bxe:Bxe_A3521 hypothetical protein
YP_997684.1	PFAM: regulatory proteins, IclR; KEGG: rme:Rmet_2600 transcriptional regulator, IclR family
YP_997685.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3664 hypothetical protein
YP_997686.1	PFAM: regulatory protein, LuxR; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bxe:Bxe_B2742 ATP-dependent transcriptional regulator, MalT related, LuxR family
YP_997687.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bxe:Bxe_B2739 short-chain dehydrogenase/reductase SDR
YP_997688.1	PFAM: protein of unknown function DUF35; KEGG: rpe:RPE_1795 protein of unknown function DUF35
YP_997689.1	KEGG: rpc:RPC_1686 acetyl-CoA acetyltransferase-like
YP_997690.1	activates fatty acids by binding to coenzyme A
YP_997692.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rme:Rmet_2531 acyl-CoA dehydrogenase-like protein
YP_997693.1	KEGG: rme:Rmet_2528 hypothetical protein
YP_997694.1	PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_2527 MaoC-like dehydratase
YP_997695.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B0398 probable extra-cytoplasmic solute receptor
YP_997696.1	PFAM: Endoribonuclease L-PSP; KEGG: sco:SCO4389 acetyltransferase
YP_997697.1	PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_3194 uncharacterized protein UPF0065
YP_997699.1	PFAM: aminotransferase, class V; KEGG: bld:BLi03531 YcbU
YP_997700.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding:bacterial regulatory protein, Crp
YP_997701.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_997703.1	KEGG: eca:ECA2119 hypothetical protein
YP_997704.1	KEGG: eca:ECA2119 hypothetical protein
YP_997705.1	KEGG: xac:XAC1868 hypothetical protein
YP_997706.1	TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: pca:Pcar_0129 rhs family protein
YP_997707.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: tbd:Tbd_2693 putative diguanylate cyclase (GGDEF domain)
YP_997708.1	TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; KEGG: ppu:PP_4469 guanylate kinase
YP_997709.1	PFAM: protein of unknown function DUF1045; KEGG: rfr:Rfer_0147 protein of unknown function DUF1045
YP_997710.1	KEGG: bps:BPSL2857 putative phosphonate metabolism PhnG protein
YP_997711.1	PFAM: phosphonate metabolism; KEGG: rpa:RPA0694 putative PhnH protein, phosphonate metabolism, function unknown
YP_997712.1	PFAM: phosphonate metabolism; KEGG: rfr:Rfer_0143 phosphonate metabolism
YP_997713.1	PFAM: phosphonate metabolism PhnJ; KEGG: bxe:Bxe_B2182 putative phosphonate metabolism PhnJ protein
YP_997714.1	KEGG: ret:RHE_CH00163 probable phosphonate ABC transporter, ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase
YP_997715.1	KEGG: cvi:CV1841 phosphonates transport ATP-binding protein phnL; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase
YP_997716.1	TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bpm:BURPS1710b_3351 phosphonate metabolism protein PhnM
YP_997717.1	KEGG: rfr:Rfer_0185 phosphonate ABC transporter PhnC, ATP-binding; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_997718.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rfr:Rfer_0184 phosphonate-binding periplasmic protein
YP_997719.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0183 phosphonate uptake transporter
YP_997720.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bxe:Bxe_B0982 transcriptional regulator, GntR family
YP_997721.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: bxe:Bxe_B0979 conserved hypothetical protein with cupin domain
YP_997722.1	PFAM: NIPSNAP family containing protein; KEGG: bxe:Bxe_B0973 hypothetical protein
YP_997723.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: bbr:BB4074 putative 2-hydroxy-3-oxopropionate reductase
YP_997724.1	PFAM: Uncharacterized protein UPF0065; KEGG: ret:RHE_CH03432 hypothetical protein
YP_997725.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bxe:Bxe_B0969 putative short-chain alcohol dehydrogenase
YP_997726.1	TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; KEGG: rpa:RPA4740 putative 4-carboxymuconolactone decarboxylase
YP_997727.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB4065 hypothetical protein
YP_997728.1	PFAM: beta-lactamase domain protein; KEGG: bbr:BB4072 hypothetical protein
YP_997729.1	KEGG: bbr:BB4066 hypothetical protein
YP_997730.1	PFAM: Alkaline phosphatase; KEGG: ana:all0207 putative phosphodiesterase
YP_997731.1	PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_3812 MaoC-like dehydratase
YP_997732.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A3375 probable extra-cytoplasmic solute receptor
YP_997733.1	KEGG: eba:ebA6355 transposase, IS4 family
YP_997734.1	PFAM: cation efflux protein; KEGG: pol:Bpro_3481 cation efflux protein
YP_997735.1	PFAM: regulatory protein, MerR; KEGG: pfl:PFL_5893 Cd(II)/Pb(II)-responsive transcriptional regulator
YP_997736.1	KEGG: pgi:PG1178 hypothetical protein
YP_997737.1	KEGG: cps:CPS_0806 hypothetical protein
YP_997738.1	KEGG: plu:plu4671 putative flavoprotein involved in K+ transport
YP_997740.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ava:Ava_C0009 amino acid adenylation
YP_997741.1	PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: plu:plu4674 hypothetical protein
YP_997742.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: plu:plu4673 hypothetical protein
YP_997743.1	PFAM: acyl-protein synthetase, LuxE; KEGG: plu:plu4672 hypothetical protein
YP_997744.1	KEGG: ana:all8064 similar to H repeat-associated protein
YP_997745.1	KEGG: eba:ebA4933 transposase (IS4)
YP_997746.1	PFAM: GatB/Yqey domain protein; KEGG: pol:Bpro_3285 GatB/YqeY
YP_997747.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_997749.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3793 ABC transporter related
YP_997750.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3794 ABC transporter related
YP_997751.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3171 inner-membrane translocator
YP_997752.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3172 inner-membrane translocator
YP_997753.1	PFAM: Inorganic pyrophosphatase; KEGG: rfr:Rfer_1473 inorganic diphosphatase
YP_997754.1	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient
YP_997755.1	PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2290 aldehyde dehydrogenase (NAD+)
YP_997756.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_997757.1	PFAM: N-6 DNA methylase; KEGG: bte:BTH_I2743 type I restriction system adenine methylase
YP_997758.1	TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; KEGG: chy:CHY_1110 nucleotidyltransferase substrate binding protein
YP_997759.1	KEGG: par:Psyc_0879 probable death-on-curing family protein
YP_997760.1	TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; KEGG: xom:XOO_3261 nucleotidyltransferase
YP_997761.1	PFAM: restriction modification system DNA specificity domain; DNA polymerase, beta domain protein region; KEGG: cte:CT0679 type I restriction system specificity protein
YP_997762.1	KEGG: swo:Swol_0508 hypothetical protein
YP_997763.1	KEGG: rfr:Rfer_4009 hypothetical protein
YP_997764.1	KEGG: bte:BTH_I2740 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like
YP_997765.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A1592 ABC transporter related
YP_997766.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_A1593 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_997767.1	PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: reu:Reut_A1594 extracellular solute-binding protein, family 3
YP_997768.1	PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: pol:Bpro_1140 CheA signal transduction histidine kinases
YP_997769.1	PFAM: chemotaxis sensory transducer; KEGG: rfr:Rfer_1374 methyl-accepting chemotaxis sensory transducer
YP_997770.1	PFAM: CheW domain protein; KEGG: pol:Bpro_1138 CheW-like protein
YP_997771.1	PFAM: response regulator receiver; KEGG: pol:Bpro_1137 response regulator receiver domain protein (CheY-like)
YP_997772.1	PFAM: response regulator receiver; KEGG: rfr:Rfer_1371 response regulator receiver domain protein
YP_997773.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pol:Bpro_1135 rubredoxin-type Fe(Cys)4 protein
YP_997774.1	PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: pol:Bpro_1134 putative phosphomethylpyrimidine kinase
YP_997775.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_997776.1	involved in de novo purine biosynthesis
YP_997777.1	PFAM: helix-turn-helix, Fis-type; KEGG: pol:Bpro_1131 transcriptional regulator, fis family
YP_997778.1	TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_1130 dihydrouridine synthase TIM-barrel protein nifR3
YP_997780.1	KEGG: pol:Bpro_1129 hypothetical protein
YP_997781.1	KEGG: bpa:BPP0985 hypothetical protein
YP_997782.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; dihydroorotate dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: reh:H16_B2194 glutamate synthase [NADPH], glutamate synthase amidotransferase domain
YP_997783.1	PFAM: glutamate synthase, alpha subunit domain protein; KEGG: reh:H16_B2193 glutamine amidotransferases class-II
YP_997784.1	PFAM: glutamine amidotransferase, class-II; KEGG: reh:H16_B2192 glutamine amidotransferases class-II
YP_997785.1	PFAM: glutamine synthetase, catalytic region; KEGG: reh:H16_B2191 glutamine synthetase
YP_997786.1	PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: reh:H16_B2190 transcriptional regulator, XRE-family
YP_997787.1	PFAM: FAD dependent oxidoreductase; KEGG: reh:H16_B2189 D-amino-acid dehydrogenase
YP_997788.1	PFAM: LysR, substrate-binding; KEGG: bam:Bamb_2000 transcriptional regulator, LysR family
YP_997789.1	KEGG: rfr:Rfer_3186 ABC transporter related
YP_997790.1	KEGG: sus:Acid_2311 hypothetical protein
YP_997791.1	KEGG: mxa:MXAN_6405 hypothetical protein
YP_997792.1	KEGG: cvi:CV3941 hypothetical protein
YP_997794.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH695 ABC transporter ATP-binding protein
YP_997795.1	PFAM: ABC-2 type transporter; KEGG: bce:BC5354 ABC transporter permease protein
YP_997796.1	KEGG: pol:Bpro_1674 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A
YP_997797.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bur:Bcep18194_A4977 hypothetical protein
YP_997798.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rle:pRL90211 putative LysR family transcriptional regulator
YP_997799.1	PFAM: HpcH/HpaI aldolase; KEGG: fnu:FN1379 citrate lyase beta chain / citryl-CoA lyase subunit
YP_997800.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B2116 probable extra-cytoplasmic solute receptor
YP_997801.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sus:Acid_3090 formyl-CoA transferase
YP_997802.1	KEGG: pae:PA5251 hypothetical protein
YP_997803.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_997804.1	PFAM: virulence factor MVIN family protein; KEGG: sco:SCO2709 integral membrane protein
YP_997805.1	PFAM: HpcH/HpaI aldolase; KEGG: syg:sync_0175 hypothetical protein
YP_997806.1	PFAM: sugar transferase; KEGG: sth:STH2716 sugar transferase involved in lipopolysaccharide synthesis
YP_997808.1	TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; KEGG: rha:RHA1_ro08824 fumarate hydratase, class I
YP_997809.1	KEGG: pai:PAE2131 fumarate hydratase class I beta subunit
YP_997810.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4610 hypothetical protein
YP_997811.1	PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3855 HpcH/HpaI aldolase
YP_997813.1	activator of 3-phenylpropionic acid catabolism
YP_997814.1	KEGG: rpc:RPC_0116 hypothetical protein
YP_997815.1	KEGG: mlo:mll0910 hypothetical protein
YP_997816.1	KEGG: mmc:Mmcs_2604 hypothetical protein
YP_997817.1	PFAM: amidohydrolase 2; KEGG: bja:blr3839 putative dicarboxylic acid hydrolase
YP_997818.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_997819.1	KEGG: rfr:Rfer_2777 hypothetical protein
YP_997820.1	PFAM: protein of unknown function UPF0005; KEGG: rfr:Rfer_2776 protein of unknown function UPF0005
YP_997821.1	PFAM: protein of unknown function DUF336; KEGG: rfr:Rfer_2775 protein of unknown function DUF336
YP_997822.1	KEGG: pol:Bpro_3054 hypothetical protein
YP_997824.1	KEGG: nmu:Nmul_A0110 hypothetical protein
YP_997825.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_3053 biopolymer transport protein ExbD/TolR
YP_997826.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_3052 MotA/TolQ/ExbB proton channel
YP_997827.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pol:Bpro_3051 TonB-like
YP_997828.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3050 hypothetical protein
YP_997829.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mfa:Mfla_1607 ABC transporter related
YP_997830.1	PFAM: transport system permease protein; KEGG: dra:DRB0015 putative hemin transport system permease protein
YP_997831.1	PFAM: periplasmic binding protein; KEGG: gvi:gll0580 hemin-binding periplasmic protein
YP_997832.1	PFAM: Haemin-degrading family protein; KEGG: bur:Bcep18194_B0220 heme degradation protein
YP_997833.1	TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bte:BTH_II2139 TonB-dependent heme/hemoglobin receptor family protein
YP_997834.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3049 FMN-dependent alpha-hydroxy acid dehydrogenase
YP_997835.1	PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pol:Bpro_3048 2OG-Fe(II) oxygenase
YP_997836.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pol:Bpro_3047 TonB-dependent siderophore receptor
YP_997837.1	PFAM: SWIB/MDM2 domain protein; KEGG: pol:Bpro_2811 SWIB complex, BAF60b
YP_997839.1	TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: aha:AHA_2817 isocitrate lyase
YP_997840.1	TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase, SAD; KEGG: pol:Bpro_2102 threonyl-tRNA synthetase
YP_997841.1	TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: rfr:Rfer_1337 translation initiation factor IF-3
YP_997842.1	PFAM: ribosomal protein L35; KEGG: pol:Bpro_2104 ribosomal protein L35
YP_997843.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_997844.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_997845.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_997846.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_997847.1	PFAM: regulatory protein, MerR; KEGG: rfr:Rfer_1343 transcriptional regulator, MerR family
YP_997848.1	PFAM: BLUF domain protein; KEGG: pol:Bpro_0667 sensors of blue-light using FAD
YP_997852.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_C0961 transcriptional regulator, LysR family
YP_997853.1	PFAM: helix-turn-helix domain protein; KEGG: bxe:Bxe_A1931 transcriptional regulator, XRE family
YP_997854.1	PFAM: HipA domain protein; KEGG: bxe:Bxe_A1930 conserved hypothetical protein, HipA-like
YP_997855.1	KEGG: rle:pRL100168 putative transposase
YP_997856.1	PFAM: transposase, IS4 family protein; KEGG: eba:ebA6355 transposase, IS4 family
YP_997857.1	PFAM: transposase, IS4 family protein; KEGG: eba:ebA6355 transposase, IS4 family
YP_997859.1	KEGG: net:Neut_1256 ISRm2011-2 transposase protein
YP_997860.1	KEGG: xcv:XCV1442 putative secreted protein
YP_997861.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pol:Bpro_2320 CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_997862.1	KEGG: sth:STH1011 hypothetical protein
YP_997864.1	PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein
YP_997865.1	KEGG: pol:Bpro_1798 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_997866.1	Involved in ubiquinone biosynthesis
YP_997867.1	PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1796 OmpA/MotB
YP_997868.1	negatively supercoils closed circular double-stranded DNA
YP_997869.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_997870.1	TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pol:Bpro_1792 chorismate mutase
YP_997871.1	PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_1568 prephenate dehydrogenase
YP_997872.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation
YP_997873.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_997874.1	PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_1788 integration host factor, beta subunit
YP_997875.1	KEGG: rso:RSc0850 hypothetical protein
YP_997876.1	KEGG: pae:PA2736 hypothetical protein
YP_997877.1	PFAM: N-6 DNA methylase; KEGG: xom:XOO_3262 type I restriction system adenine methylase
YP_997878.1	PFAM: restriction modification system DNA specificity domain; KEGG: cte:CT0679 type I restriction system specificity protein
YP_997879.1	KEGG: xom:XOO_3256 hypothetical protein
YP_997880.1	KEGG: xom:XOO_3254 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like
YP_997882.1	KEGG: ljo:LJ0291 Lj965 prophage protein
YP_997883.1	KEGG: eca:ECA2201 putative integrase
YP_997884.1	PFAM: transposase, IS4 family protein; KEGG: rpe:RPE_4588 transposase, IS4 family protein
YP_997885.1	PFAM: aminotransferase class-III; KEGG: bam:Bamb_4163 aminotransferase class-III
YP_997886.1	PFAM: Amidase; KEGG: sco:SCO2825 putative amidase
YP_997887.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4879 NAD-dependent epimerase/dehydratase
YP_997888.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bxe:Bxe_C0802 putative amidohydrolase
YP_997889.1	PFAM: Endoribonuclease L-PSP; KEGG: pab:PAB0825 putative translation initiation inhibitor
YP_997890.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bur:Bcep18194_B0419 ferredoxin/oxidoreductase FAD/NAD(P)-binding
YP_997891.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: mlo:mll1286 probable NAD(P)H dehydrogenase
YP_997892.1	KEGG: nha:Nham_0425 perplasmic binding protein of ABC transporter
YP_997893.1	PFAM: FAD linked oxidase domain protein; KEGG: ter:Tery_3682 FAD linked oxidase-like
YP_997894.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C0801 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit
YP_997895.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll1293 ATP-binding protein of ABC transporter
YP_997896.1	PFAM: Creatininase; KEGG: pol:Bpro_4255 creatininase
YP_997897.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rpa:RPA3624 possible gluconolactonase precursor
YP_997898.1	KEGG: noc:Noc_2274 fimbrial assembly protein
YP_997900.1	KEGG: pol:Bpro_1810 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_997901.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1809 signal transduction histidine kinase, nitrogen specific, NtrB
YP_997902.1	KEGG: rfr:Rfer_2980 conserved hypothetical signal peptide protein
YP_997903.1	KEGG: pol:Bpro_1807 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp
YP_997904.1	PFAM: molybdopterin binding domain; KEGG: pol:Bpro_1806 molybdopterin binding domain
YP_997905.1	KEGG: rfr:Rfer_2977 putative transmembrane protein
YP_997906.1	KEGG: pol:Bpro_1804 hypothetical protein
YP_997907.1	PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1803 polysaccharide deacetylase
YP_997908.1	TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1802 hypothetical protein
YP_997909.1	PFAM: phosphoribosyltransferase; KEGG: rfr:Rfer_2295 phosphoribosyltransferase
YP_997910.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_997911.1	PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: rfr:Rfer_2297 tRNA synthetase, class II (G, H, P and S)
YP_997912.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: bxe:Bxe_A0729 xylulokinase
YP_997913.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: hch:HCH_01299 AraC-type DNA-binding domain-containing protein
YP_997914.1	Converts D-sorbitol to L-sorbose
YP_997915.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: bch:Bcen2424_2585 mannitol dehydrogenase, C-terminal domain
YP_997916.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_01297 ABC-type sugar transport system, ATPase components
YP_997917.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01296 ABC-type sugar transport system, permease component
YP_997918.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01295 ABC-type sugar transport system, permease components
YP_997919.1	PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_01294 ABC-type sugar transport system, periplasmic component
YP_997920.1	PFAM: thymidylate synthase; KEGG: rfr:Rfer_2986 thymidylate synthase
YP_997921.1	PFAM: dihydrofolate reductase region; KEGG: pol:Bpro_1822 dihydrofolate reductase
YP_997922.1	KEGG: pol:Bpro_4717 putative signal peptide protein
YP_997923.1	TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: pol:Bpro_4716 biotin--acetyl-CoA-carboxylase ligase
YP_997924.1	PFAM: nuclear protein SET; KEGG: rfr:Rfer_3954 nuclear protein SET
YP_997925.1	decatenates replicating daughter chromosomes
YP_997926.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: bpe:BP0484 L-lactate dehydrogenase
YP_997927.1	AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase
YP_997928.1	KEGG: pol:Bpro_1015 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_997929.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3232 lipoprotein releasing system, transmembrane protein, LolC/E family
YP_997930.1	KEGG: rfr:Rfer_3233 hypothetical protein
YP_997931.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: rfr:Rfer_3234 single-stranded-DNA-specific exonuclease RecJ
YP_997932.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A2131 probable extra-cytoplasmic solute receptor
YP_997933.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_997934.1	KEGG: rso:RSp0996 probable tartrate dehydrogenase oxidoreductase protein; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_997935.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0722 transcriptional regulator, LysR family
YP_997936.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pfl:PFL_0336 transcriptional regulator, LysR family
YP_997937.1	KEGG: pfl:PFL_0335 polyamine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase
YP_997938.1	KEGG: pfl:PFL_0334 polyamine ABC transporter, periplasmic polyamine-binding protein
YP_997939.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_0333 polyamine ABC transporter, permease protein
YP_997940.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_0332 polyamine ABC transporter, permease protein, putative
YP_997942.1	PFAM: amidinotransferase; KEGG: mlo:mll7670 hypothetical protein
YP_997943.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rpb:RPB_1134 transcriptional regulator, AraC family
YP_997944.1	PFAM: aminotransferase class-III; KEGG: pol:Bpro_0421 aminotransferase class-III
YP_997945.1	PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B3638 aldehyde dehydrogenase
YP_997946.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rru:Rru_A0799 extracellular solute-binding protein, family 5
YP_997947.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0806 ABC dipeptide transporter, inner membrane subunit DppB
YP_997948.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C0195 ABC peptide/opine/nickel family transporter, inner membrane subunit
YP_997949.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mlr5516 oligopeptide ABC transporter, ATP-binding protein
YP_997950.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0803 ABC dipeptide transporter, ATPase subunit DppF
YP_997951.1	TIGRFAM: outer membrane protein; KEGG: pen:PSEEN0746 hypothetical protein
YP_997953.1	KEGG: pen:PSEEN0746 hypothetical protein
YP_997954.1	TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cvi:CV0864 probable haloacid dehalogenase
YP_997955.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1397 ABC transporter related
YP_997956.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1396 ABC transporter related
YP_997957.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_1395 inner-membrane translocator
YP_997958.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_1394 inner-membrane translocator
YP_997959.1	KEGG: pol:Bpro_1393 twin-arginine translocation pathway signal
YP_997960.1	KEGG: rfr:Rfer_3359 hypothetical protein
YP_997961.1	KEGG: rfr:Rfer_2597 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase
YP_997962.1	TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: pol:Bpro_2046 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
YP_997963.1	TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: rso:RSp1279 probable fumarate hydratase class II (fumarase) protein
YP_997964.1	PFAM: Uncharacterized protein UPF0114; KEGG: pol:Bpro_2048 uncharacterized protein UPF0114
YP_997966.1	TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_2581 acetate--CoA ligase
YP_997967.1	KEGG: rfr:Rfer_3310 hypothetical protein
YP_997968.1	PFAM: cytochrome c, class I; KEGG: pol:Bpro_2050 cytochrome c, class I
YP_997969.1	KEGG: rfr:Rfer_2469 hypothetical protein
YP_997970.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_997971.1	KEGG: rso:RS01764 hypothetical protein
YP_997972.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_997973.1	KEGG: pol:Bpro_4369 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain
YP_997974.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_997975.1	PFAM: alanine dehydrogenase/PNT domain protein; Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pau:PA14_71560 glutathione-independent formaldehyde dehydrogenase
YP_997976.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bxe:Bxe_B1613 ABC proline/glycine betaine transporter, periplasmic ligand binding protein
YP_997978.1	KEGG: rfr:Rfer_2893 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein
YP_997979.1	TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: pol:Bpro_2702 polyhydroxyalkanoate synthesis repressor PhaR
YP_997980.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_997981.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_997982.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5882 uncharacterized protein UPF0065
YP_997983.1	PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_5269 pyruvate carboxyltransferase
YP_997984.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpb:RPB_2774 L-carnitine dehydratase/bile acid-inducible protein F
YP_997985.1	TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; KEGG: rfr:Rfer_1744 GTP-binding protein Era
YP_997986.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_997987.1	KEGG: rfr:Rfer_1742 putative transmembrane protein
YP_997988.1	KEGG: rfr:Rfer_1741 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B
YP_997989.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_997991.1	TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rfr:Rfer_1739 peptidase S1C, Do
YP_997992.1	PFAM: MucB/RseB family protein; KEGG: rfr:Rfer_1738 putative sigma E regulatory protein, MucB/RseB
YP_997993.1	PFAM: Anti sigma-E protein RseA family protein; KEGG: pol:Bpro_3642 anti sigma-E protein, RseA, Burkholderiaceae specific
YP_997994.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_997995.1	KEGG: rfr:Rfer_1735 hypothetical protein
YP_997996.1	PFAM: beta-ketoacyl synthase; KEGG: rfr:Rfer_1734 beta-ketoacyl synthase
YP_997997.1	carries the fatty acid chain in fatty acid biosynthesis
YP_997998.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_3647 3-oxoacyl-(acyl-carrier-protein) reductase
YP_997999.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: pol:Bpro_3648 malonyl CoA-acyl carrier protein transacylase
YP_998000.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_998001.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_998002.1	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: rfr:Rfer_1728 ribosomal protein L32
YP_998005.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: mes:Meso_1049 6-phosphogluconate dehydrogenase, NAD-binding
YP_998006.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B0349 probable extra-cytoplasmic solute receptor
YP_998007.1	PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB0583 crotonobetaine/carnitine-CoA ligase
YP_998008.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sma:SAV6600 putative acyl-CoA dehydrogenase
YP_998009.1	PFAM: amidohydrolase 2; KEGG: ypa:YPA_1315 putative dicarboxylic acid hydrolase
YP_998010.1	PFAM: regulatory protein, LysR; KEGG: bur:Bcep18194_B2165 transcriptional regulator, LysR family
YP_998011.1	PFAM: protein of unknown function DUF177; KEGG: rfr:Rfer_1727 protein of unknown function DUF177
YP_998012.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pol:Bpro_3654 maf protein
YP_998013.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_3655 putative transmembrane protein
YP_998014.1	PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rfr:Rfer_1520 pyridoxal-5'-phosphate-dependent enzyme, beta subunit
YP_998015.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: dge:Dgeo_2827 oxidoreductase-like
YP_998016.1	PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: dge:Dgeo_2826 xylose isomerase-like TIM barrel
YP_998017.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_A3673 ABC sugar transporter, periplasmic ligand binding protein
YP_998018.1	KEGG: rfr:Rfer_2550 hypothetical protein
YP_998019.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mll3595 similar to D-tagatose 3-epimerase-related protein
YP_998020.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sme:SMc00340 putative oxidoreductase protein
YP_998021.1	PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A3674 ABC sugar transporter, inner membrane subunit
YP_998022.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3675 ABC sugar transporter, ATPase subunit
YP_998023.1	PFAM: ROK family protein; KEGG: sco:SCO6566 ROK family protein
YP_998025.1	PFAM: peptidase S45, penicillin amidase; KEGG: oih:OB3304 penicillin acylase
YP_998026.1	PFAM: Rhodanese domain protein; KEGG: pol:Bpro_1742 3-mercaptopyruvate sulfurtransferase
YP_998027.1	KEGG: pol:Bpro_1743 putative transmembrane protein
YP_998028.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_2878 Rieske (2Fe-2S) protein
YP_998029.1	TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: pol:Bpro_1745 exonuclease VII, small subunit
YP_998030.1	PFAM: Polyprenyl synthetase; KEGG: rfr:Rfer_2876 polyprenyl synthetase
YP_998031.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_998032.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_2873 twin-arginine translocation pathway signal
YP_998033.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_2873 twin-arginine translocation pathway signal
YP_998035.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: eba:ebA4484 putative sulfate transporter
YP_998036.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_1305 diguanylate cyclase
YP_998037.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rfr:Rfer_1304 cobyrinic acid a,c-diamide synthase
YP_998038.1	PFAM: inner-membrane translocator; KEGG: bja:bll6328 ABC transporter permease protein
YP_998039.1	KEGG: bja:bll6327 ABC transporter substrate-binding protein
YP_998040.1	PFAM: inner-membrane translocator; Strictosidine synthase; SMP-30/Gluconolaconase/LRE domain protein; KEGG: bja:blr7869 ABC transporter permease protein
YP_998041.1	PFAM: Strictosidine synthase; KEGG: mlo:mll1723 hypothetical protein
YP_998042.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll1722 ATP-binding protein of sugar ABC transporter
YP_998043.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sme:SMc03929 putative zinc-type alcohol dehydrogenase transmembrane protein
YP_998044.1	PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: reh:H16_B0137 conserved hypothetical membrane protein
YP_998045.1	PFAM: aminotransferase, class V; KEGG: reu:Reut_B5541 aminotransferase, class V
YP_998046.1	alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family
YP_998047.1	PFAM: protein of unknown function DUF1177; KEGG: bur:Bcep18194_B2321 hypothetical protein
YP_998050.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: mfa:Mfla_0814 signal transduction histidine kinase, glucose-6-phosphate specific
YP_998051.1	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: mfa:Mfla_0815 two component transcriptional regulator, LuxR family
YP_998052.2	catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation
YP_998053.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1239 ABC transporter, permease protein
YP_998054.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_1046 binding-protein-dependent transport systems inner membrane component
YP_998055.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pfo:Pfl_1047 spermidine/putrescine ABC transporter ATP-binding subunit
YP_998056.1	PFAM: extracellular solute-binding protein, family 1; KEGG: pfo:Pfl_1048 extracellular solute-binding protein, family 1
YP_998058.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pfo:Pfl_1050 transcriptional regulator, LysR family
YP_998059.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: pol:Bpro_0188 protein of unknown function DUF224, cysteine-rich region
YP_998060.1	PFAM: FAD linked oxidase domain protein; KEGG: rfr:Rfer_0480 FAD linked oxidase-like
YP_998061.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rfr:Rfer_0473 ammonium transporter
YP_998062.1	PFAM: nitrogen regulatory protein P-II; KEGG: rfr:Rfer_0472 nitrogen regulatory protein P-II
YP_998063.1	KEGG: pol:Bpro_0182 hypothetical protein
YP_998064.1	KEGG: rfr:Rfer_0471 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_998065.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_5424 transcriptional regulator, LysR family
YP_998066.1	PFAM: MmgE/PrpD family protein; KEGG: reh:H16_B1436 2-methylcitrate dehydratase
YP_998067.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rme:Rmet_5425 acyl-CoA dehydrogenase-like protein
YP_998068.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_5112 uncharacterized protein UPF0065
YP_998069.1	PFAM: CoA-binding domain protein; KEGG: rme:Rmet_5367 CoA-binding
YP_998070.1	PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_0655 YjgF-like protein
YP_998071.1	PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_0656 twin-arginine translocation pathway signal
YP_998073.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0657 binding-protein-dependent transport systems inner membrane component
YP_998074.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0932 binding-protein-dependent transport systems inner membrane component
YP_998075.1	KEGG: pol:Bpro_0659 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_998076.1	KEGG: pol:Bpro_0660 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_998077.1	KEGG: pol:Bpro_0661 D-serine deaminase
YP_998078.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0662 transcriptional regulator, RpiR family
YP_998079.1	PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: rfr:Rfer_0927 N-acyl-D-amino-acid deacylase
YP_998080.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_1051 general amino acid ABC transporter, ATP-binding protein
YP_998081.1	PFAM: extracellular solute-binding protein, family 3; KEGG: sme:SMa0082 putative ABC transporter, periplasmic solute-binding protein
YP_998082.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0081 putative ABC transporter permease
YP_998083.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0079 putative ABC transporter permease
YP_998084.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bms:BR2049 transcriptional regulator, LacI family
YP_998085.1	KEGG: eba:p2A340 transposase
YP_998087.1	PFAM: helix-turn-helix domain protein; KEGG: bam:Bamb_2380 transcriptional regulator, XRE family
YP_998088.1	KEGG: son:SOA0170 ISSod9, DNA-invertase
YP_998089.1	TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: bhe:BH03400 DNA-damage-inducible protein
YP_998090.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: bhe:BH03410 hypothetical prophage protein
YP_998091.1	KEGG: rme:Rmet_6188 transposase Tn3
YP_998093.1	PFAM: protein of unknown function DUF891; KEGG: bxe:Bxe_C1183 hypothetical protein
YP_998094.1	KEGG: bxe:Bxe_C1184 predicted transcriptional regulator
YP_998095.1	KEGG: xcv:XCV2163 hypothetical protein
YP_998097.1	PFAM: plasmid stabilization system; KEGG: ppu:PP_2500 hypothetical protein
YP_998098.1	PFAM: CopG domain protein DNA-binding domain protein; KEGG: ppu:PP_2499 hypothetical protein
YP_998099.1	PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: xac:XAC2433 resolvase
YP_998101.1	KEGG: pol:Bpro_3038 integrase, catalytic region
YP_998102.1	PFAM: phage integrase family protein; KEGG: reu:Reut_A1625 phage integrase:phage integrase, N-terminal SAM-like
YP_998103.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_3196 putative transposase
YP_998104.1	PFAM: aminoglycoside phosphotransferase; KEGG: bba:Bd1317 oxidoreductase
YP_998105.1	KEGG: pau:PA14_37760 putative MFS transporter
YP_998107.1	KEGG: bam:Bamb_0913 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_998108.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2025 transporter, LysE family
YP_998109.1	KEGG: pae:PA2243 hypothetical protein
YP_998110.1	KEGG: nha:Nham_2014 phage integrase
YP_998111.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_998112.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_998113.1	PFAM: Colicin V production protein; KEGG: pol:Bpro_1606 colicin V production protein
YP_998114.1	PFAM: Sporulation domain protein; KEGG: pol:Bpro_1605 sporulation related
YP_998115.1	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_2686 FolC bifunctional protein
YP_998116.1	PFAM: arsenate reductase and related; KEGG: pol:Bpro_1602 hypothetical protein
YP_998117.1	PFAM: 17 kDa surface antigen; KEGG: rfr:Rfer_0378 17 kDa surface antigen
YP_998118.1	PFAM: alanine racemase domain protein; KEGG: cps:CPS_4887 putative threonine aldolase
YP_998119.1	PFAM: extracellular solute-binding protein, family 3; KEGG: ret:RHE_PF00167 probable amino acid ABC transporter, substrate-binding protein
YP_998120.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_0039 ABC transporter related
YP_998121.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb21137 putative amino acid uptake ABC transporter permease protein
YP_998122.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_1958 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_998124.1	PFAM: regulatory protein, LuxR; KEGG: reu:Reut_B4759 regulatory protein, LuxR
YP_998125.1	KEGG: gsu:GSU3083 ISGsu7, transposase OrfB
YP_998126.1	KEGG: reu:Reut_B5647 glyoxalase/bleomycin resistance protein/dioxygenase
YP_998127.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0446 3-hydroxyisobutyrate dehydrogenase
YP_998128.1	PFAM: ferric-uptake regulator; KEGG: reh:H16_B0784 transcriptional regulator, Fur-family
YP_998129.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpe:BP3082 putative transport protein ATP-binding
YP_998130.1	PFAM: ABC-3 protein; KEGG: rru:Rru_A3703 ABC-3 transporter component
YP_998131.1	PFAM: periplasmic solute binding protein; KEGG: bpe:BP3080 putative periplasmic solute binding protein
YP_998132.1	KEGG: mfa:Mfla_0703 hypothetical protein
YP_998133.1	PFAM: protein of unknown function DUF214; KEGG: mfa:Mfla_0704 protein of unknown function DUF214
YP_998134.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vch:VC2553 ABC transporter, ATP-binding protein, authentic frameshift
YP_998135.1	KEGG: hch:HCH_00656 ABC-type metal ion transport system, periplasmic component/surface adhesin
YP_998136.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2160 transcriptional regulator, GntR family
YP_998137.1	MDM; functions in conversion of succinate to propionate
YP_998139.1	functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins
YP_998140.1	PFAM: carboxyl transferase; KEGG: rfr:Rfer_2803 propionyl-CoA carboxylase
YP_998141.1	KEGG: cvi:CV2900 hypothetical protein
YP_998142.1	PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_2167 carbamoyl-phosphate synthase L chain, ATP-binding
YP_998143.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_998144.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_2296 dimethylmenaquinone methyltransferase
YP_998145.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4526 twin-arginine translocation pathway signal
YP_998146.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4526 twin-arginine translocation pathway signal
YP_998147.1	KEGG: rfr:Rfer_2801 lactoylglutathione lyase
YP_998148.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rfr:Rfer_2294 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes
YP_998149.1	KEGG: rfr:Rfer_3771 integral membrane protein
YP_998150.1	KEGG: rfr:Rfer_2230 hypothetical protein
YP_998151.1	PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rfr:Rfer_2424 lipolytic enzyme, G-D-S-L
YP_998152.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2425 ABC transporter related
YP_998153.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: pol:Bpro_3029 RNA methyltransferase TrmH, group 3
YP_998154.1	PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_01294 ABC-type sugar transport system, periplasmic component
YP_998155.1	PFAM: PfkB domain protein; KEGG: sbo:SBO_3129 possible carbohydrate kinase
YP_998156.1	PFAM: inner-membrane translocator; KEGG: ecp:ECP_3344 putative sugar uptake ABC transporter permease protein
YP_998157.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb21376 putative sugar uptake ABC transporter ATP-binding protein
YP_998158.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ecp:ECP_3346 putative sugar uptake ABC transporter periplasmic solute-binding protein
YP_998159.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: stm:STM3252 Aga operon transcriptional repressor
YP_998160.1	KEGG: bxe:Bxe_B2527 hypothetical protein
YP_998161.1	PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_3718 monooxygenase, FAD-binding
YP_998162.1	KEGG: jan:Jann_1431 hypothetical protein
YP_998163.1	KEGG: tbd:Tbd_1936 hypothetical protein
YP_998164.1	KEGG: rpa:RPA1444 putative oligopeptide binding protein precursor; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_998165.1	KEGG: rpa:RPA1445 putative oligopeptide transport ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_998166.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rpb:RPB_0232 extracellular solute-binding protein, family 5
YP_998167.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1447 putative oligopeptide ABC transporter (permease)
YP_998169.1	KEGG: mlo:mll7366 ABC transporter binding protein
YP_998170.1	PFAM: inner-membrane translocator; KEGG: mlo:mll7365 ABC transporter permease protein
YP_998171.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll7362 ABC sugar transport ATP binding protein
YP_998172.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: mlo:mll1735 hypothetical protein
YP_998173.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mll1734 hypothetical protein
YP_998174.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1448 putative oligopeptide ABC transporter (permease)
YP_998175.1	PFAM: AMP-dependent synthetase and ligase; KEGG: nar:Saro_2453 AMP-dependent synthetase and ligase
YP_998176.1	activates fatty acids by binding to coenzyme A
YP_998177.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr5285 hypothetical protein
YP_998178.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065
YP_998179.1	catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate
YP_998180.1	PFAM: regulatory proteins, IclR; Helix-turn-helix, type 11 domain protein; KEGG: reu:Reut_B5810 regulatory protein, IclR
YP_998181.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5807 glyoxalase/bleomycin resistance protein/dioxygenase
YP_998184.1	KEGG: net:Neut_1843 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_998185.1	KEGG: pol:Bpro_0561 2-keto-4-pentenoate hydratase-like
YP_998186.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: atc:AGR_C_2588 hypothetical protein
YP_998187.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: atc:AGR_C_2590 probable ATP-binding component of ABC transporter
YP_998188.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_C_2592 putative ABC transport system permease protein
YP_998189.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_C_2593 trehalose/maltose transport inner membrane protein
YP_998190.1	PFAM: extracellular solute-binding protein, family 1; KEGG: atc:AGR_C_2594 putative multiple sugar transport system substrate-binding protein
YP_998191.1	KEGG: sme:SMa2305 putative ABC transporter, periplasmic solute-binding protein
YP_998192.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mlo:mlr3587 ALPHA-GLUCOSIDES TRANSPORT ATP-BINDING PROTEIN AGLK
YP_998193.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sal:Sala_0750 binding-protein-dependent transport systems inner membrane component
YP_998194.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL90125 putative permease transporter component
YP_998195.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rle:pRL90126 putative solute binding-protein component of transporter
YP_998196.1	PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1861 alpha-L-arabinofuranosidase
YP_998197.1	KEGG: sme:SMa2307 putative ABC transporter, permease
YP_998198.1	KEGG: ret:RHE_CH02656 beta-D-galactosidase protein
YP_998199.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: psp:PSPPH_3577 transcriptional regulator, GntR family
YP_998200.1	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis
YP_998202.1	KEGG: pol:Bpro_1597 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein
YP_998203.1	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_998204.1	KEGG: pol:Bpro_1595 hypothetical protein
YP_998205.1	KEGG: rfr:Rfer_2693 HD-GYP domain-like
YP_998206.1	PFAM: protein of unknown function DUF205; KEGG: rfr:Rfer_2695 protein of unknown function DUF205
YP_998207.1	KEGG: rru:Rru_B0024 RepA-related protein
YP_998208.1	KEGG: rru:Rru_B0024 RepA-related protein
YP_998209.1	PFAM: protein of unknown function DUF891; KEGG: plt:Plut_0606 hypothetical protein
YP_998210.1	KEGG: cch:Cag_1578 hypothetical protein
YP_998212.1	KEGG: plu:plu2371 hypothetical protein
YP_998213.1	PFAM: PilT protein domain protein; KEGG: gox:GOX2696 plasmid stabilization protein
YP_998214.1	KEGG: psp:PSPPH_A0137 plasmid stability protein StbC
YP_998215.1	PFAM: aldo/keto reductase; KEGG: pol:Bpro_1592 aldo/keto reductase
YP_998216.1	KEGG: bxe:Bxe_C1131 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_998217.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_0693 ABC transporter-related protein
YP_998218.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RS05400 probable amino acid transmembrane ABC transporter protein
YP_998219.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_0691 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_998220.1	PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: rso:RSc2257 probable amino-acid-binding periplasmic ABC transporter protein
YP_998221.1	KEGG: bxe:Bxe_C1132 hypothetical protein
YP_998222.1	PFAM: Rhodanese domain protein; KEGG: bxe:Bxe_B2410 putative rhodanese-like domain protein
YP_998223.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RSc1094 probable transcriptional regulatory DNA-binding transcription regulator protein
YP_998224.1	PFAM: type III restriction enzyme, res subunit; KEGG: bbr:BB0913 type III restriction enzyme
YP_998225.1	KEGG: pol:Bpro_5073 ATPase-like
YP_998226.1	KEGG: pol:Bpro_5072 hypothetical protein
YP_998227.1	PFAM: SNF2-related protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: ecc:c5378 hypothetical protein
YP_998229.1	PFAM: metallophosphoesterase; KEGG: ade:Adeh_3700 metallophosphoesterase
YP_998230.1	PFAM: protein kinase; UspA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ade:Adeh_3699 serine/threonine protein kinase
YP_998231.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A2779 probable extra-cytoplasmic solute receptor
YP_998232.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB0533 enoyl-CoA hydratase/isomerase family protein
YP_998233.1	PFAM: CoA-binding domain protein; KEGG: bbr:BB4797 putative acetyl-CoA synthetase
YP_998234.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1349 hypothetical protein
YP_998235.1	catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_998236.1	PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pol:Bpro_2415 lysine decarboxylase
YP_998237.1	PFAM: protein of unknown function DUF107; KEGG: rfr:Rfer_2125 protein of unknown function DUF107
YP_998238.1	PFAM: band 7 protein; KEGG: pol:Bpro_2413 band 7 protein
YP_998239.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rle:pRL110026 putative LysR family transcriptional regulator
YP_998240.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tfu:Tfu_0491 ferredoxin
YP_998241.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rle:pRL110025 putative carnitinyl-CoA dehydratase
YP_998242.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rle:pRL110024 putative acyl-CoA transferase
YP_998243.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rle:pRL110023 similar to E.coli invasion protein
YP_998244.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll8571 ABC transporter, permease protein
YP_998245.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL110021 putative ATP-binding component of ABC transporter
YP_998246.1	KEGG: jan:Jann_3755 twin-arginine translocation pathway signal
YP_998247.1	PFAM: aldehyde dehydrogenase; KEGG: ccr:CC0419 aldehyde dehydrogenase
YP_998248.1	KEGG: bur:Bcep18194_C6923 hypothetical protein
YP_998249.1	KEGG: bur:Bcep18194_C6923 hypothetical protein
YP_998250.1	KEGG: pfl:PFL_2070 hypothetical protein
YP_998251.1	PFAM: protein of unknown function DUF779; KEGG: aeh:Mlg_2727 protein of unknown function DUF779
YP_998252.1	PFAM: aldehyde dehydrogenase; KEGG: gka:GK3198 NAD-dependent aldehyde dehydrogenase
YP_998253.1	PFAM: regulatory protein, LysR; KEGG: pol:Bpro_2496 putative transcriptional regulator, ModE family
YP_998254.1	KEGG: bxe:Bxe_B1192 hypothetical protein
YP_998255.1	KEGG: spt:SPA4291 subunit R of type I restriction-modification system
YP_998256.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: spt:SPA4289 DNA methyltransferase SptAIM; protects DNA against PvuII endonuclease
YP_998257.1	KEGG: mpa:MAP0314 hypothetical protein
YP_998258.1	TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pol:Bpro_1321 general secretion pathway protein G
YP_998259.1	TIGRFAM: general secretion pathway protein H; KEGG: rfr:Rfer_0535 general secretion pathway protein H
YP_998260.1	TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: rfr:Rfer_0536 general secretion pathway protein I
YP_998261.1	KEGG: rfr:Rfer_0537 methylation
YP_998262.1	KEGG: pol:Bpro_1325 general secretion pathway protein K
YP_998263.1	PFAM: General secretion pathway L; KEGG: pol:Bpro_1326 hypothetical protein
YP_998264.1	KEGG: pol:Bpro_1327 hypothetical protein
YP_998265.1	KEGG: rfr:Rfer_0541 putative general secretory pathway N transmembrane protein
YP_998266.1	TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rfr:Rfer_0542 type II and III secretion system protein
YP_998267.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3966 hypothetical protein
YP_998268.1	PFAM: gamma-glutamyltranspeptidase; KEGG: rme:Rmet_4046 gamma-glutamyltranspeptidase
YP_998269.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: xac:XAC1312 methylmalonate-semialdehyde dehydrogenase
YP_998270.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr7871 ABC transporter ATP-binding protein
YP_998271.1	PFAM: Strictosidine synthase; KEGG: bja:blr7870 hypothetical protein
YP_998272.1	PFAM: inner-membrane translocator; Strictosidine synthase; SMP-30/Gluconolaconase/LRE domain protein; KEGG: bja:blr7869 ABC transporter permease protein
YP_998273.1	KEGG: bja:blr7868 ABC transporter substrate-binding protein
YP_998274.1	PFAM: inner-membrane translocator; KEGG: bja:blr7867 ABC transporter permease protein
YP_998275.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bbr:BB2630 probable acyl-CoA dehydrogenase
YP_998276.1	KEGG: pol:Bpro_2471 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding
YP_998277.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_998278.1	PFAM: dihydrodipicolinate synthetase; KEGG: rha:RHA1_ro05285 probable dihydrodipicolinate synthase/N-acetylneuraminate lyase
YP_998279.1	PFAM: major facilitator superfamily MFS_1; KEGG: rle:pRL110019 putative transmembrane transporter
YP_998280.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_998281.1	KEGG: atc:AGR_C_4908 hypothetical protein
YP_998282.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B1814 probable extra-cytoplasmic solute receptor
YP_998283.1	TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: mfa:Mfla_1220 type I restriction-modification system, M subunit
YP_998285.1	KEGG: bfr:BF4223 hypothetical protein
YP_998286.1	PFAM: restriction modification system DNA specificity domain; KEGG: sas:SAS0395 putative restriction and modification system specificity protein
YP_998287.1	KEGG: cte:CT2254 hypothetical protein
YP_998288.1	PFAM: protein of unknown function DUF955; KEGG: cte:CT2253 hypothetical protein
YP_998289.1	KEGG: mfa:Mfla_1215 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like
YP_998290.1	KEGG: pol:Bpro_1053 hypothetical protein
YP_998291.1	PFAM: polysaccharide deacetylase; KEGG: mmc:Mmcs_2257 polysaccharide deacetylase
YP_998292.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ttj:TTHA0369 oxidoreductase, short-chain dehydrogenase/reductase family
YP_998293.1	PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; KEGG: dsy:DSY4724 hypothetical protein
YP_998295.1	PFAM: PfkB domain protein; KEGG: pol:Bpro_1737 PfkB
YP_998296.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: sme:SMb20749 putative D-mannonate oxidoreductase protein
YP_998297.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_3978 mandelate racemase/muconate lactonizing enzyme
YP_998298.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc3408 probable ATP-binding ABC transporter protein
YP_998299.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C0684 ABC polar amino acid family transporter, inner membrane subunit
YP_998300.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2969 ABC transporter permease protein
YP_998301.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: atc:AGR_C_2601 L-idonate 5-dehydrogenase
YP_998302.1	SMART: extracellular solute-binding protein, family 3; KEGG: vch:VCA1039 polar amino acid transport system substrate-binding protein
YP_998303.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: pol:Bpro_3977 GntR-like
YP_998304.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ecv:APECO1_2416 putative transcriptional regulator, LacI family
YP_998305.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: sme:SMc04400 putative oxidoreductase protein
YP_998306.1	PFAM: coenzyme A transferase; KEGG: mlo:mlr3047 acetyl-CoA:acetoacetyl-CoA transferase A subunit
YP_998307.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ecv:APECO1_2418 putative enoyl-CoA hydratase/isomerase family protein
YP_998308.1	PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr3049 NADP-dependent aldehyde dehydrogenase
YP_998309.1	PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc04396 putative periplasmic binding protein
YP_998310.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04395 putative transport system permease ABC transporter protein
YP_998311.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bme:BMEII0592 sugar transport system permease protein
YP_998312.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMc04393 putative ATP-binding ABC transporter protein
YP_998313.1	PFAM: glucose-methanol-choline oxidoreductase; KEGG: atc:AGR_L_1138 hypothetical protein
YP_998314.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_998315.1	PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: sme:SMc04390 putative L-sorbose dehydrogenase, FAD dependent protein
YP_998316.1	PFAM: protein of unknown function DUF993; KEGG: sme:SMc04402 hypothetical protein
YP_998318.1	KEGG: pfl:PFL_2856 hypothetical protein
YP_998319.1	KEGG: sus:Acid_5449 hypothetical protein
YP_998320.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN2129 dioxygenase, beta subunit
YP_998323.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4286 uncharacterized protein UPF0065
YP_998324.1	KEGG: sme:SMb21090 conserved hypothetical membrane-anchored protein
YP_998325.1	KEGG: sme:SMb21090 conserved hypothetical membrane-anchored protein
YP_998326.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: aba:Acid345_0646 gluconolactonase-like
YP_998327.1	KEGG: mes:Meso_3709 hypothetical protein
YP_998328.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: art:Arth_0423 enoyl-CoA hydratase/isomerase
YP_998329.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sco:SCO0362 racemase
YP_998330.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mes:Meso_3704 short-chain dehydrogenase/reductase SDR
YP_998331.1	PFAM: inner-membrane translocator; KEGG: ctc:CTC00906 ribose transport system permease protein rbsC
YP_998332.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bch:Bcen2424_5039 ABC transporter related
YP_998333.1	PFAM: inner-membrane translocator; KEGG: cpf:CPF_1881 ribose ABC transporter, permease protein
YP_998334.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb21377 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
YP_998335.1	PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2201 ATPase AAA-2
YP_998336.1	PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4051 probable coniferyl aldehyde dehydrogenase
YP_998337.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_2769 GCN5-related N-acetyltransferase
YP_998338.1	KEGG: cvi:CV0796 probable periplasmic protein
YP_998339.1	KEGG: cvi:CV0795 hypothetical protein
YP_998340.1	PFAM: iron permease FTR1; KEGG: bxe:Bxe_A3150 oxidase-dependent Fe2+ transporter, (OFeT)family, FTR1-like
YP_998341.1	KEGG: bpm:BURPS1710b_A1924 nitrogen fixation protein VnfA
YP_998343.1	KEGG: pen:PSEEN0746 hypothetical protein
YP_998344.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_998345.1	KEGG: pol:Bpro_2587 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24
YP_998346.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_998347.1	KEGG: pol:Bpro_2590 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_998348.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rpa:RPA4653 biotin sulfoxide reductase
YP_998350.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pae:PA3592 hypothetical protein
YP_998351.1	KEGG: rpa:RPA4652 possible CoA transferase, subunit B
YP_998352.1	KEGG: rpa:RPA4651 possible glutaconate CoA-transferase, subunit A
YP_998353.1	PFAM: cysteine dioxygenase type I; KEGG: rme:Rmet_2216 cysteine dioxygenase type I
YP_998354.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_B1899 transcriptional regulator, LysR family
YP_998355.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bxe:Bxe_B1901 putative acyl-CoA dehydrogenase
YP_998356.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_998357.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_998358.1	PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2324 transcriptional regulator, IclR family
YP_998359.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: pol:Bpro_2323 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
YP_998360.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_998361.1	PFAM: molybdopterin biosynthesis MoaE; KEGG: rfr:Rfer_1917 molybdopterin biosynthesis MoaE
YP_998362.1	PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_2873 lytic transglycosylase, catalytic
YP_998365.1	KEGG: rfr:Rfer_2656 hypothetical protein
YP_998367.1	PFAM: thioesterase superfamily protein; KEGG: pfl:PFL_2301 thioesterase family protein
YP_998368.1	KEGG: eba:ebA2531 hypothetical protein
YP_998370.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: bbr:BB0907 hypothetical protein
YP_998372.1	KEGG: ade:Adeh_1681 PE-PGRS family protein
YP_998373.1	PFAM: PepSY-associated TM helix domain protein; KEGG: reh:H16_A1449 hypothetical protein
YP_998374.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: reh:H16_B1976 outer membrane receptor, TonB dependent
YP_998375.1	KEGG: pol:Bpro_1047 extracellular solute-binding protein, family 3
YP_998376.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1046 binding-protein-dependent transport systems inner membrane component
YP_998377.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1045 ABC transporter related
YP_998378.1	TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: reu:Reut_A2717 histidine utilization repressor
YP_998379.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_998380.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_998381.1	PFAM: protein of unknown function DUF886; KEGG: pol:Bpro_1036 protein of unknown function DUF886
YP_998382.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_998383.1	catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate
YP_998384.1	PFAM: N-formylglutamate amidohydrolase; KEGG: reh:H16_A3013 N-formylglutamate amidohydrolase
YP_998385.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_998386.1	PFAM: phage integrase family protein; KEGG: cvi:CV0651 prophage CP4-like integrase
YP_998388.1	PFAM: C-5 cytosine-specific DNA methylase; KEGG: hch:HCH_02855 site-specific DNA methylase
YP_998389.1	PFAM: phage Gp37Gp68 family protein; KEGG: bpm:BURPS1710b_1658 GP38
YP_998391.1	KEGG: aci:ACIAD2257 putative DNA exonuclease X
YP_998394.1	PFAM: transposase, IS4 family protein; KEGG: eba:ebA6355 transposase, IS4 family
YP_998395.1	KEGG: bch:Bcen2424_0224 conserved hypothetical protein
YP_998396.1	KEGG: eba:p1B250 hypothetical protein
YP_998397.1	KEGG: eba:ebA8 hypothetical protein
YP_998401.1	KEGG: dar:Daro_2217 hypothetical protein
YP_998404.1	SMART: helicase c2; KEGG: csa:Csal_1624 helicase C2
YP_998405.1	SMART: helix-turn-helix domain protein; KEGG: gme:Gmet_0317 transcriptional regulator, XRE family
YP_998406.1	KEGG: bam:Bamb_0140 hypothetical protein
YP_998407.1	PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related
YP_998409.1	PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related
YP_998411.1	PFAM: UvrD/REP helicase; KEGG: rme:Rmet_6314 UvrD/REP helicase
YP_998413.1	PFAM: transposase, IS4 family protein; KEGG: xom:XOO_1836 ISXoo5 transposase
YP_998415.1	KEGG: dar:Daro_2562 hypothetical protein
YP_998416.1	PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: eba:p1B53 ATP-dependent DNA helicase
YP_998417.1	PFAM: nuclease (SNase domain protein); KEGG: eba:p1B201 predicted staphylococcal nuclease homologue
YP_998419.1	KEGG: rme:Rmet_6244 hypothetical protein
YP_998420.1	KEGG: rme:Rmet_6227 hypothetical protein
YP_998422.1	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: xcv:XCVd0044 putative secreted protein
YP_998423.1	KEGG: rde:RD1_1140 hypothetical protein
YP_998424.1	KEGG: plt:Plut_1900 hypothetical protein
YP_998425.1	KEGG: bpm:BURPS1710b_2544 hypothetical protein
YP_998426.1	KEGG: dar:Daro_2218 hypothetical protein
YP_998428.1	PFAM: conjugation TrbI family protein; KEGG: pol:Bpro_5237 conjugation TrbI-like protein
YP_998429.1	PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: nha:Nham_4439 conjugal transfer protein TrbG/VirB9/CagX
YP_998431.1	KEGG: rme:Rmet_6288 hypothetical protein
YP_998433.1	KEGG: ecp:ECP_1912 putative type IV pilin protein precursor
YP_998434.1	KEGG: bpm:BURPS1710b_A0652 BfpE
YP_998435.1	PFAM: type II secretion system protein E; KEGG: rfr:Rfer_4246 type II secretion system protein E
YP_998438.1	KEGG: bma:BMAA1610 putative type IV pilus biogenesis protein PilN
YP_998439.1	KEGG: rme:Rmet_6295 hypothetical protein
YP_998440.1	KEGG: rme:Rmet_6298 hypothetical protein
YP_998441.1	KEGG: rme:Rmet_6307 hypothetical protein
YP_998443.1	KEGG: rme:Rmet_6305 type IV secretory pathway VirB4 components-like protein
YP_998446.1	PFAM: type II secretion system protein E; KEGG: rme:Rmet_6302 type II secretion system protein E
YP_998449.1	KEGG: reu:Reut_B5104 allergen V5/TPX-1 related
YP_998451.1	PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related
YP_998453.1	KEGG: eci:UTI89_P075 hypothetical protein
YP_998454.1	KEGG: rme:Rmet_1243 hypothetical protein
YP_998455.1	KEGG: dar:Daro_2213 hypothetical protein
YP_998456.1	KEGG: dar:Daro_2212 hypothetical protein
YP_998457.1	KEGG: rso:RSc2622 probable integrase protein
YP_998458.1	KEGG: ilo:IL0002 DNA polymerase sliding clamp subunit
YP_998460.1	PFAM: Phage P4 alpha, zinc-binding domain protein; KEGG: dar:Daro_2694 hypothetical protein
YP_998461.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pol:Bpro_4565 single-strand binding protein
YP_998462.1	KEGG: bpm:BURPS1710b_1566 hypothetical protein
YP_998464.1	KEGG: rme:Rmet_6218 putative ATPase involved in DNA repair
YP_998465.1	KEGG: dar:Daro_2238 DNA repair exonuclease-like protein
YP_998467.1	KEGG: bja:bll1927 hypothetical protein
YP_998468.1	PFAM: transposase, IS4 family protein; KEGG: sdn:Sden_1172 transposase, IS4
YP_998469.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bam:Bamb_1971 AAA ATPase, central domain protein
YP_998470.1	KEGG: bam:Bamb_1970 hypothetical protein
YP_998471.1	PFAM: Sigma-70, region 4 type 2; KEGG: vpa:VP1081 hypothetical protein
YP_998472.1	KEGG: vpa:VP1082 hypothetical protein
YP_998473.1	PFAM: UvrD/REP helicase; protein of unknown function DUF955; KEGG: vpa:VP1083 putative ATP-dependent DNA helicase
YP_998474.1	KEGG: hne:HNE_2550 hypothetical protein
YP_998475.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: hne:HNE_2549 ThiF family protein
YP_998476.1	KEGG: hne:HNE_2548 hypothetical protein
YP_998478.1	KEGG: pol:Bpro_3196 putative transposase
YP_998479.1	KEGG: rme:Rmet_6312 hypothetical protein
YP_998480.1	KEGG: rme:Rmet_6309 hypothetical protein
YP_998481.1	KEGG: dar:Daro_2306 relaxase
YP_998482.1	KEGG: hsa:5493 periplakin
YP_998485.1	PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: ypm:YP_1932 putative methyltransferase
YP_998487.1	PFAM: phosphoadenosine phosphosulfate reductase; KEGG: bte:BTH_II1365 GP51
YP_998488.1	PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: ypm:YP_1932 putative methyltransferase
YP_998489.1	KEGG: rme:Rmet_6048 superfamily I DNA and RNA helicases-like protein
YP_998492.1	KEGG: cbu:CBU_1328 hypothetical protein
YP_998493.1	KEGG: rso:RSc1202 probable flavoprotein NADH-dependent oxidoreductase
YP_998494.1	KEGG: bte:BTH_II0278 JamB
YP_998495.1	KEGG: mxa:MXAN_4414 non-ribosomal peptide synthase
YP_998496.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mlo:mlr7811 transcriptional regulator
YP_998497.1	PFAM: PilT protein domain protein; KEGG: eba:ebA3350 plasmid stability protein
YP_998498.1	KEGG: psp:PSPPH_A0137 plasmid stability protein StbC
YP_998499.1	KEGG: bam:Bamb_6611 relaxase/mobilization nuclease family protein
YP_998500.1	KEGG: bxe:Bxe_B1945 putative transposase
YP_998501.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: reu:Reut_A1001 glutathione S-transferase, N-terminal:glutathione S-transferase, C-terminal
YP_998502.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rso:RSc2751 putative galactonate dehydratase protein
YP_998503.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism
YP_998504.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rso:RSc2753 short chain dehydrogenase
YP_998505.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_998506.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_998507.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc2758 probable L-arabinose-binding periplasmic (pbp) ABC transporter protein
YP_998508.1	KEGG: rso:RSc2759 probable 2-dehydro-3-deoxygalactonokinase protein
YP_998509.1	PFAM: CBS domain containing protein; KEGG: pol:Bpro_1837 CBS domain
YP_998510.1	catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol
YP_998511.1	PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_3159 alpha/beta hydrolase
YP_998512.1	TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_1830 ribonuclease BN, putative
YP_998513.1	KEGG: pol:Bpro_1829 membrane protein-like
YP_998514.1	PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_1828 FAD linked oxidase-like
YP_998515.1	PFAM: Chromate transporter; KEGG: rfr:Rfer_2757 chromate transporter
YP_998516.1	PFAM: Chromate transporter; KEGG: pol:Bpro_3026 chromate transporter
YP_998518.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_B4887 binding-protein-dependent transport systems inner membrane component
YP_998519.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_B4886 ABC transporter related
YP_998520.1	KEGG: reu:Reut_B4885 putative uncharacterized conserved protein
YP_998521.1	KEGG: reu:Reut_B4884 hypothetical protein
YP_998522.1	TIGRFAM: urea amidolyase related protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: reu:Reut_B4883 allophanate hydrolase subunit 2
YP_998523.1	PFAM: Haemolysin-type calcium binding domain protein; KEGG: rso:RSc0246 putative calcium binding hemolysin protein
YP_998524.1	PFAM: Hemolysin-type calcium-binding region; KEGG: psb:Psyr_3823 hemolysin-type calcium-binding region:putative Ig
YP_998525.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5303 hypothetical protein
YP_998526.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5849 hypothetical protein
YP_998527.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_998528.1	catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_998529.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: reu:Reut_C6359 malate/L-lactate dehydrogenase
YP_998530.1	PFAM: regulatory protein GntR, HTH; KEGG: reu:Reut_B5299 regulatory protein GntR, HTH
YP_998531.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: reh:H16_A1258 D-galactarate dehydratase
YP_998532.1	PFAM: SAF domain; KEGG: reh:H16_A1259 D-galactarate dehydratase
YP_998533.1	KEGG: reu:Reut_B5296 hypothetical protein
YP_998534.1	KEGG: reu:Reut_B5295 hypothetical protein
YP_998535.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_C6360 zinc-containing alcohol dehydrogenase superfamily
YP_998536.1	PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reu:Reut_C6361 taurine dioxygenase
YP_998537.1	PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: reh:H16_B2481 APC transporter, NCS1 family
YP_998538.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2131 ABC transporter related
YP_998539.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2130 binding-protein-dependent transport systems inner membrane component
YP_998540.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2129 binding-protein-dependent transport systems inner membrane component
YP_998541.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rfr:Rfer_2128 extracellular solute-binding protein, family 5
YP_998542.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_2419 short-chain dehydrogenase/reductase SDR
YP_998543.1	PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rfr:Rfer_2734 radical SAM
YP_998544.1	PFAM: protein of unknown function UPF0029; KEGG: dar:Daro_1379 hypothetical protein
YP_998545.1	KEGG: rfr:Rfer_2561 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_998546.1	TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rfr:Rfer_2562 poly(R)-hydroxyalkanoic acid synthase, class I
YP_998547.1	PFAM: protein of unknown function DUF152; KEGG: rfr:Rfer_2564 protein of unknown function DUF152
YP_998548.1	TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2136 maleylacetoacetate isomerase
YP_998549.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rfr:Rfer_2567 fumarylacetoacetate (FAA) hydrolase
YP_998550.1	PFAM: NUDIX hydrolase; KEGG: pol:Bpro_2117 NUDIX hydrolase
YP_998551.1	KEGG: net:Neut_1832 fimbrial protein pilin
YP_998552.1	KEGG: noc:Noc_2274 fimbrial assembly protein
YP_998553.1	KEGG: rfr:Rfer_2662 putative transmembrane protein
YP_998554.1	KEGG: reh:H16_A2837 type IV pilus assembly protein PilW
YP_998555.1	TIGRFAM: type IV pilus modification protein PilV; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV
YP_998556.1	KEGG: noc:Noc_2270 putative type-4 fimbrial pilin related signal peptide protein
YP_998559.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: cvi:CV0136 glycerol-3-phosphate regulon repressor
YP_998561.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB1157 high-affinity branched-chain amino acid transport ATP-binding protein
YP_998562.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1618 branched chain amino acid ABC transporter ATP-binding protein
YP_998563.1	PFAM: Extracellular ligand-binding receptor; KEGG: smu:SMU.1669 putative ABC transporter, branched chain amino acid-binding protein
YP_998564.1	PFAM: inner-membrane translocator; KEGG: gka:GK1660 branched-chain amino acid ABC transporter (permease)
YP_998565.1	PFAM: inner-membrane translocator; KEGG: bja:blr3616 ABC transporter permease protein
YP_998566.1	PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV377 putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase
YP_998567.1	PFAM: protein of unknown function DUF1486; KEGG: rpd:RPD_0690 protein of unknown function DUF1486
YP_998568.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_998570.1	PFAM: transposase, IS4 family protein; KEGG: rpe:RPE_4588 transposase, IS4 family protein
YP_998571.1	KEGG: pol:Bpro_3196 putative transposase
YP_998572.1	KEGG: eba:ebA5688 hypothetical protein
YP_998573.1	KEGG: eba:ebA5690 transposase
YP_998574.1	KEGG: rha:RHA1_ro09044 ABC peptide transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_998575.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_998576.1	KEGG: rha:RHA1_ro09045 ABC peptide transporter, ATP-binding component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_998577.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09046 ABC peptide transporter, permease component
YP_998578.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09047 ABC peptide transporter, permease component
YP_998579.1	PFAM: extracellular solute-binding protein, family 5; KEGG: psb:Psyr_2678 extracellular solute-binding protein, family 5
YP_998580.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bur:Bcep18194_C6741 enoyl-CoA hydratase/isomerase
YP_998581.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bur:Bcep18194_C6740 short-chain dehydrogenase/reductase SDR
YP_998582.1	PFAM: AMP-dependent synthetase and ligase; KEGG: bur:Bcep18194_C6739 AMP-dependent synthetase and ligase
YP_998583.1	KEGG: bur:Bcep18194_C6745 hypothetical protein
YP_998584.1	PFAM: Thiolase; KEGG: bur:Bcep18194_C6746 thiolase
YP_998585.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_3196 putative transposase
YP_998586.1	PFAM: regulatory protein, TetR; KEGG: ccr:CC2493 transcriptional regulator, TetR family
YP_998587.1	PFAM: regulatory protein, TetR; KEGG: ccr:CC2493 transcriptional regulator, TetR family
YP_998588.1	KEGG: reh:H16_B0916 transcriptional regulator, IclR-family
YP_998589.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_B0915 enoyl-CoA hydratase/carnithine racemase
YP_998590.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B0914 acyl-CoA transferase/carnitine dehydratase
YP_998591.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reh:H16_B0913 acyl-CoA dehydrogenase
YP_998592.1	KEGG: rfr:Rfer_2595 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
YP_998593.1	PFAM: regulatory protein, TetR; KEGG: ccr:CC2493 transcriptional regulator, TetR family
YP_998594.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4214 hypothetical protein
YP_998595.1	KEGG: rme:Rmet_2601 hypothetical protein
YP_998596.1	PFAM: Thiolase; KEGG: rme:Rmet_2602 thiolase
YP_998597.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_2603 enoyl-CoA hydratase/isomerase
YP_998598.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rme:Rmet_2604 short-chain dehydrogenase/reductase SDR
YP_998599.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rme:Rmet_2605 2-nitropropane dioxygenase, NPD
YP_998600.1	PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr2951 putative long-chain-fatty-acid--CoA ligase
YP_998601.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: mxa:MXAN_5629 alcohol dehydrogenase, iron-containing
YP_998602.1	PFAM: aldehyde dehydrogenase; KEGG: bxe:Bxe_A2720 betaine-aldehyde dehydrogenase
YP_998603.1	PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911
YP_998604.1	KEGG: neu:NE2538 hypothetical protein
YP_998606.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rso:RSc1886 probable periplasmic dipeptide transport protein precursor
YP_998607.1	KEGG: rba:RB11509 hypothetical protein
YP_998608.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pfl:PFL_3417 glyoxalase family protein superfamily
YP_998610.1	KEGG: psp:PSPPH_2698 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_998611.1	KEGG: pol:Bpro_2529 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_998612.1	PFAM: peptidase C39, bacteriocin processing; KEGG: nme:NMB0855 bacteriocin resistance protein, putative
YP_998617.1	KEGG: nma:NMA1073 hypothetical protein
YP_998618.1	KEGG: nme:NMB0866 hypothetical protein
YP_998620.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_A3296 ABC-type transporter, permease component: PepT family
YP_998621.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2531 binding-protein-dependent transport systems inner membrane component
YP_998622.1	PFAM: Creatininase; KEGG: sye:Syncc9902_2056 hypothetical protein
YP_998623.1	PFAM: peptidase T2, asparaginase 2; KEGG: bch:Bcen2424_4161 peptidase T2, asparaginase 2
YP_998624.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: reu:Reut_A1929 helix-turn-helix protein RpiR:sugar isomerase (SIS)
YP_998625.1	KEGG: pol:Bpro_2439 hypothetical protein
YP_998626.1	PFAM: protein of unknown function UPF0125; KEGG: pol:Bpro_2438 protein of unknown function UPF0125
YP_998627.1	PFAM: cyclase/dehydrase; KEGG: pol:Bpro_2437 cyclase/dehydrase
YP_998628.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_998629.1	TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: pen:PSEEN3538 multicomponent potassium-proton antiporter, subunit G (PhaG)
YP_998630.1	PFAM: multiple resistance and pH regulation protein F; KEGG: pfo:Pfl_3314 multiple resistance and pH regulation protein F
YP_998631.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_998632.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_998633.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_998634.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+
YP_998635.1	KEGG: pol:Bpro_1783 hypothetical protein
YP_998636.1	PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: rfr:Rfer_1563 putative transmembrane protein
YP_998637.1	KEGG: pol:Bpro_1787 hypothetical protein
YP_998638.1	PFAM: 20S proteasome, A and B subunits; KEGG: rfr:Rfer_1831 hypothetical protein
YP_998639.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_998640.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_998641.1	involved in the peptidyltransferase reaction during translation
YP_998642.1	PFAM: ribosomal protein L21; KEGG: rfr:Rfer_1268 ribosomal protein L21
YP_998643.1	PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_0840 trans-hexaprenyltranstransferase
YP_998644.1	KEGG: rfr:Rfer_2902 type II secretion system protein E; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase
YP_998645.1	PFAM: type II secretion system protein; KEGG: pol:Bpro_0842 type II secretion system protein
YP_998646.1	PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: rfr:Rfer_2904 prepilin peptidase
YP_998647.1	KEGG: rfr:Rfer_2905 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase
YP_998648.1	PFAM: protein of unknown function DUF1342; KEGG: pol:Bpro_0845 protein of unknown function DUF1342
YP_998649.1	PFAM: protein of unknown function DUF329; KEGG: pol:Bpro_0846 protein of unknown function DUF329
YP_998650.1	PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_2908 NUDIX hydrolase
YP_998651.1	PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: pol:Bpro_0830 protein of unknown function DUF815
YP_998652.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_998653.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_998654.1	PFAM: peptidase M23B; KEGG: pol:Bpro_0827 peptidase M23B
YP_998655.1	KEGG: rfr:Rfer_2913 hypothetical protein
YP_998656.1	PFAM: Stringent starvation protein B; KEGG: pol:Bpro_0825 stringent starvation protein B
YP_998657.1	PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_0824 glutathione S-transferase-like
YP_998658.1	PFAM: cytochrome c1; KEGG: pol:Bpro_0823 cytochrome c1
YP_998659.1	PFAM: Cytochrome b/b6, N-terminal domain; KEGG: pol:Bpro_0822 cytochrome b/b6-like
YP_998660.1	KEGG: pol:Bpro_0821 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein
YP_998661.1	KEGG: rfr:Rfer_2962 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA
YP_998662.1	KEGG: rfr:Rfer_1400 hypothetical protein
YP_998663.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1689 GCN5-related N-acetyltransferase
YP_998664.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_998665.1	Essential for efficient processing of 16S rRNA
YP_998666.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_998667.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dar:Daro_0371 phenylacetate degradation probable enoyl-CoA hydratase PaaB
YP_998668.1	TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: eba:ebA3544 putative thioesterase PaaI involved in aerobic phenylacetate metabolism
YP_998669.1	TIGRFAM: phenylacetate-CoA ligase; KEGG: reu:Reut_B3741 phenylacetate-CoA ligase
YP_998670.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA
YP_998671.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation
YP_998672.1	TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: eba:ebA3550 putative ring-hydroxylation complex protein 2
YP_998673.1	TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: reu:Reut_A3209 phenylacetate-CoA oxygenase, PaaJ subunit
YP_998674.1	TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: eba:ebA3553 probable ring-hydroxylation complex protein 4
YP_998675.1	PFAM: regulatory protein, TetR; KEGG: eba:ebA3555 probable transcriptional regulator of paa operon
YP_998676.1	PFAM: Extracellular ligand-binding receptor; KEGG: eba:ebA3556 putative amino-acid-binding periplasmic (PBP) ABC transporter protein
YP_998677.1	PFAM: inner-membrane translocator; KEGG: eba:ebA3558 putative branched-chain amino acid transport system permease protein
YP_998678.1	PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_4098 inner-membrane translocator:ABC transporter related
YP_998679.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1871 TRAP dicarboxylate transporter, DctP subunit
YP_998680.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_1870 tripartite ATP-independent periplasmic transporter, DctQ component
YP_998681.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_1869 TRAP dicarboxylate transporter-DctM subunit
YP_998682.1	TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: pol:Bpro_1868 glycine cleavage system T protein
YP_998683.1	TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: pol:Bpro_1867 glycine cleavage system H protein
YP_998684.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_998685.1	KEGG: xcb:XC_2599 hypothetical protein
YP_998686.1	KEGG: xcb:XC_2600 hypothetical protein
YP_998688.1	PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_B0774 arabinose efflux permease
YP_998689.1	PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bte:BTH_I0670 hypothetical protein
YP_998690.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bam:Bamb_4456 alpha/beta hydrolase fold-3 domain protein
YP_998691.1	KEGG: bam:Bamb_4457 thioesterase-like protein
YP_998692.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_998693.1	PFAM: protein of unknown function DUF849; KEGG: bch:Bcen2424_5051 protein of unknown function DUF849
YP_998694.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bch:Bcen2424_5052 substrate-binding region of ABC-type glycine betaine transport system
YP_998697.1	KEGG: pol:Bpro_0292 ABC transporter nitrate-binding protein
YP_998698.1	TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0291 nitrate transport permease
YP_998699.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mfa:Mfla_2170 nitrate transport ATP-binding subunits C and D
YP_998700.1	catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide
YP_998701.1	PFAM: AFG1-family ATPase; KEGG: pol:Bpro_2621 AFG1-like ATPase
YP_998702.1	E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_998703.1	TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pol:Bpro_2623 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
YP_998704.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_998705.1	PFAM: protein of unknown function UPF0118; KEGG: bpa:BPP2512 hypothetical protein
YP_998706.1	PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: rfr:Rfer_4163 electron-transferring-flavoprotein dehydrogenase
YP_998707.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_3017 short-chain dehydrogenase/reductase SDR
YP_998708.1	PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_1898 thioesterase superfamily
YP_998709.1	PFAM: regulatory proteins, IclR; KEGG: reh:H16_B0350 transcriptional regulator, IclR-family
YP_998710.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4232 uncharacterized protein UPF0065
YP_998711.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4232 uncharacterized protein UPF0065
YP_998712.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4232 uncharacterized protein UPF0065
YP_998713.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: reh:H16_B0348 demethylmenaquinone methyltransferase
YP_998714.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: bch:Bcen2424_5397 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_998715.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gsu:GSU2524 sigma-54 dependent DNA-binding response regulator
YP_998716.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1427 twin-arginine translocation pathway signal
YP_998717.1	KEGG: sth:STH2347 hypothetical protein
YP_998718.1	KEGG: sth:STH2346 hypothetical protein
YP_998719.1	PFAM: DMSO reductase anchor subunit (DmsC); KEGG: bur:Bcep18194_B1999 DMSO reductase anchor subunit (DmsC)
YP_998720.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bur:Bcep18194_B2000 4Fe-4S ferredoxin
YP_998721.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bxe:Bxe_B1743 molybdopterin oxidoreductase
YP_998722.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cvi:CV0764 probable transcriptional regulator, LysR family
YP_998723.1	PFAM: phosphate acetyl/butaryl transferase; KEGG: rru:Rru_A1468 phosphate butyryltransferase
YP_998724.1	catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source
YP_998725.1	PFAM: regulatory proteins, IclR; KEGG: reh:H16_B1889 transcriptional regulator, IclR-family
YP_998726.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3801 uncharacterized protein UPF0065
YP_998728.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3884 hypothetical protein
YP_998729.1	KEGG: bja:blr3928 hypothetical protein
YP_998730.1	PFAM: regulatory proteins, IclR; KEGG: reu:Reut_B4627 regulatory protein, IclR
YP_998731.1	KEGG: bbr:BB0658 hypothetical protein
YP_998732.1	PFAM: ABC transporter related; KEGG: rpa:RPA4023 putative branched-chain amino acid ABC transport system ATP-binding protein
YP_998733.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_I0787 branched-chain amino acid ABC transporter, ATP-binding protein
YP_998734.1	PFAM: inner-membrane translocator; KEGG: rpb:RPB_2083 inner-membrane translocator ABC transporter
YP_998735.1	PFAM: inner-membrane translocator; KEGG: sfu:Sfum_4070 inner-membrane translocator
YP_998736.1	PFAM: Extracellular ligand-binding receptor; KEGG: bms:BR0014 branched-chain amino acid ABC transporter, perisplasmic amino acid-binding protein, putative
YP_998739.1	KEGG: pol:Bpro_4266 hypothetical protein
YP_998740.1	KEGG: pol:Bpro_3879 hypothetical protein
YP_998741.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane
YP_998742.1	PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468
YP_998743.1	PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3214 type II secretion system protein E
YP_998744.1	KEGG: rfr:Rfer_3215 hypothetical protein
YP_998745.1	KEGG: pol:Bpro_3884 hypothetical protein
YP_998746.1	PFAM: putative esterase; KEGG: mxa:MXAN_7093 S-formylglutathione hydrolase
YP_998747.1	catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione
YP_998748.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_6311 alcohol dehydrogenase GroES domain protein
YP_998749.1	PFAM: coenzyme A transferase; KEGG: reh:H16_B0199 3-oxoadipate CoA-transferase subunit B
YP_998750.1	TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: rme:Rmet_5059 3-oxoacid CoA-transferase, subunit A
YP_998751.1	KEGG: bxe:Bxe_B2416 putative MxaL-like protein
YP_998752.1	KEGG: bxe:Bxe_B2417 putative MxaK-like protein
YP_998753.1	PFAM: von Willebrand factor, type A; KEGG: bxe:Bxe_B2418 putative MxaC-like protein
YP_998754.1	KEGG: bxe:Bxe_B2418a hypothetical protein
YP_998755.1	KEGG: bxe:Bxe_B2420 putative MxaS-like protein
YP_998756.1	PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_B2421 putative MxaR-like protein
YP_998758.1	possibly involved in transport of pyrroloquinoline quinone transport
YP_998759.1	Required in the synthesis of PPQ, but its exact function is unknown
YP_998760.1	PFAM: coenzyme PQQ synthesis D; KEGG: reh:H16_B1050 pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein D
YP_998761.1	TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; KEGG: reh:H16_B1049 pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein E
YP_998762.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_C7126 acyl-CoA dehydrogenase-like protein
YP_998763.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bbr:BB2265 putative acyl-CoA dehydrogenase
YP_998764.1	KEGG: rfr:Rfer_0598 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase
YP_998765.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2916 binding-protein-dependent transport systems inner membrane component
YP_998766.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2915 binding-protein-dependent transport systems inner membrane component
YP_998767.1	PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2914 extracellular solute-binding protein, family 1
YP_998768.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2913 spermidine/putrescine ABC transporter ATP-binding subunit
YP_998769.1	TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: csa:Csal_0998 sarcosine oxidase, beta subunit family
YP_998770.1	PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; KEGG: pau:PA14_71490 sarcosine oxidase delta subunit
YP_998771.1	KEGG: cps:CPS_4034 sarcosine oxidase, alpha subunit; TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein, C-terminal barrel
YP_998772.1	PFAM: Sarcosine oxidase, gamma subunit; KEGG: pau:PA14_71510 sarcosine oxidase gamma subunit
YP_998773.1	PFAM: peptidase M19, renal dipeptidase; KEGG: bte:BTH_II1867 renal dipeptidase family protein
YP_998774.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bam:Bamb_4488 substrate-binding region of ABC-type glycine betaine transport system
YP_998775.1	KEGG: bte:BTH_II1866 V4R domain protein
YP_998776.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bte:BTH_II1865 oxidoreductase, FAD/FMN-binding
YP_998777.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: bxe:Bxe_B1581 hypothetical protein
YP_998778.1	PFAM: electron transfer flavoprotein, alpha subunit; KEGG: bps:BPSS0552 putative electron transfer flavoprotein alpha-subunit
YP_998779.1	KEGG: bpm:BURPS1710b_A2113 electron transfer flavoprotein, beta subunit
YP_998780.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: bte:BTH_II1861 iron-sulfur cluster-binding protein, rieske family
YP_998781.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: gbe:GbCGDNIH1_0075 ring hydroxylating dioxygenase oxidoreductase subunit
YP_998782.1	KEGG: bxe:Bxe_B1616 ABC proline/glycine betaine transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_998783.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bch:Bcen2424_5171 binding-protein-dependent transport systems inner membrane component
YP_998784.1	PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_B0570 transcriptional regulator, AraC family
YP_998786.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bch:Bcen2424_6639 transcriptional regulator, GntR family
YP_998787.1	PFAM: transposase, IS4 family protein; KEGG: rpe:RPE_4588 transposase, IS4 family protein
YP_998789.1	PFAM: protein of unknown function UPF0054; KEGG: rfr:Rfer_0737 protein of unknown function UPF0054
YP_998790.1	PFAM: PhoH family protein; KEGG: pol:Bpro_4095 PhoH-like protein
YP_998791.1	KEGG: rfr:Rfer_0739 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1
YP_998792.1	PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: xoo:XOO1266 endoproteinase Arg-C
YP_998793.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_998794.1	KEGG: pol:Bpro_3242 putative transmembrane protein
YP_998795.1	PFAM: protein of unknown function DUF1178; KEGG: rfr:Rfer_1508 protein of unknown function DUF1178
YP_998796.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A3662 ABC-type transporter, ATPase component: HAAT family
YP_998797.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_I3330 branched-chain amino acid ABC transporter, ATP-binding protein
YP_998798.1	KEGG: reh:H16_A3660 ABC-type transporter, periplasmic component
YP_998799.1	PFAM: inner-membrane translocator; KEGG: reu:Reut_A3368 inner-membrane translocator
YP_998800.1	PFAM: inner-membrane translocator; KEGG: reh:H16_A3658 ABC-type transporter, permease component
YP_998801.1	PFAM: phosphoglycerate kinase; KEGG: rfr:Rfer_3690 phosphoglycerate kinase
YP_998802.1	PFAM: branched-chain amino acid transport; KEGG: pol:Bpro_4636 branched-chain amino acid transport
YP_998803.1	PFAM: AzlC family protein; KEGG: pol:Bpro_4637 AzlC-like
YP_998804.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: pol:Bpro_4638 methionyl-tRNA formyltransferase
YP_998805.1	KEGG: rfr:Rfer_3860 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_998806.1	PFAM: Peptidoglycan-binding LysM; KEGG: rfr:Rfer_3861 peptidoglycan-binding LysM
YP_998807.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rfr:Rfer_3862 DNA processing protein DprA, putative
YP_998808.1	KEGG: rfr:Rfer_3864 hypothetical protein
YP_998809.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_998810.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_998811.1	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: rfr:Rfer_3867 preprotein translocase, YajC subunit
YP_998813.1	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_998815.1	PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0736 protein of unknown function DUF894, DitE
YP_998817.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_998818.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3499 inner-membrane translocator
YP_998819.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3500 inner-membrane translocator
YP_998820.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3501 ABC transporter related
YP_998821.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3502 ABC transporter related
YP_998822.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_3503 AMP-dependent synthetase and ligase
YP_998823.1	PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_3504 extracellular ligand-binding receptor
YP_998824.1	PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_3504 extracellular ligand-binding receptor
YP_998825.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2752 acyl-CoA dehydrogenase-like
YP_998826.1	PFAM: regulatory protein, MarR; KEGG: rpd:RPD_1540 regulatory protein, MarR
YP_998827.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rpe:RPE_0611 short-chain dehydrogenase/reductase SDR
YP_998828.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpe:RPE_0612 naphthoate synthase
YP_998829.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reh:H16_B1694 acyl-CoA dehydrogenase
YP_998830.1	AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate
YP_998831.1	PFAM: inner-membrane translocator; KEGG: bbr:BB2756 permease component of ABC transporter protein
YP_998832.1	PFAM: inner-membrane translocator; KEGG: eba:ebA5306 putative ABC-transporter
YP_998833.1	PFAM: ABC transporter related; KEGG: sth:STH824 branched chain amino acid ABC transporter ATP-binding protein
YP_998834.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0197 ABC transporter related
YP_998835.1	PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_C6330 twin-arginine translocation pathway signal
YP_998836.1	PFAM: dihydrodipicolinate synthetase; KEGG: eca:ECA1002 putative dihydrodipicolinate synthase
YP_998837.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB4185 putative oxidoreductase
YP_998838.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4853 uncharacterized protein UPF0065
YP_998839.1	PFAM: peptidase M15D, vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: pfl:PFL_4023 D-alanyl-D-alanine dipeptidase
YP_998840.1	KEGG: pfl:PFL_4028 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_998841.1	KEGG: pfl:PFL_4027 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_998842.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_4026 dipeptide ABC transporter, permease protein
YP_998843.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_4025 binding-protein-dependent transport systems inner membrane component domain protein
YP_998844.1	PFAM: extracellular solute-binding protein, family 5; KEGG: ecs:ECs2091 putative hemin-binding lipoprotein
YP_998845.1	PFAM: helix-turn-helix protein RpiR; KEGG: ppu:PP_3592 transcriptional regulator, RpiR family
YP_998846.1	PFAM: aminotransferase class-III; KEGG: bja:blr3552 putative glutamate-1-semialdehyde 2,1-aminomutase
YP_998848.1	KEGG: rru:Rru_A3065 transcriptional regulator, XRE family
YP_998849.1	KEGG: eba:ebB86 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system
YP_998850.1	PFAM: transposase, IS111A/IS1328/IS1533; KEGG: bxe:Bxe_C0485 putative transposase IS116/IS110/IS902
YP_998851.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bmb:BruAb2_1035 hypothetical transcriptional regulator
YP_998852.1	KEGG: bja:blr3548 hypothetical protein
YP_998853.1	KEGG: bja:blr3549 putative N,N-dimethylformamidase
YP_998854.1	TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: eba:ebA1561 plasmid maintenance system antidote protein
YP_998855.1	PFAM: plasmid maintenance system killer; KEGG: eba:ebA1560 plasmid maintenance system killer protein
YP_998856.1	KEGG: xom:XOO_2345 transposase
YP_998857.1	KEGG: bbr:BB1542 cystathionase beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes
YP_998858.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2040 uncharacterized protein UPF0065
YP_998859.1	SMART: Rhodanese domain protein; KEGG: pol:Bpro_2041 rhodanese-like
YP_998860.1	KEGG: pol:Bpro_2042 hypothetical protein
YP_998861.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2043 transcriptional regulator, LysR family
YP_998862.1	TIGRFAM: outer membrane protein; KEGG: pen:PSEEN0746 hypothetical protein
YP_998863.1	KEGG: rha:RHA1_ro06644 translation initiation factor IF-2
YP_998864.1	KEGG: pen:PSEEN0746 hypothetical protein
YP_998866.1	TIGRFAM: outer membrane protein; KEGG: she:Shewmr4_0384 putative outer membrane adhesin like protein
YP_998867.1	KEGG: pen:PSEEN0746 hypothetical protein
YP_998868.1	KEGG: pen:PSEEN0746 hypothetical protein
YP_998869.1	PFAM: SpoVT/AbrB domain protein; KEGG: sme:SMc03949 nitrogen regulatory protein
YP_998870.1	PFAM: PilT protein domain protein; SMART: Nucleotide binding protein, PINc; KEGG: sme:SMc01521 nitrogen regulatory protein
YP_998871.1	KEGG: bch:Bcen2424_6087 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_998872.1	catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position
YP_998873.1	PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bch:Bcen2424_6237 NCS1 nucleoside transporter family
YP_998874.1	catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines
YP_998875.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_998876.1	PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; KEGG: bur:Bcep18194_B0799 transcriptional regulator, TetR family
YP_998877.1	KEGG: pol:Bpro_1343 hypothetical protein
YP_998878.1	KEGG: pol:Bpro_1341 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_998879.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_998880.1	PFAM: protein phosphatase 2C domain protein; KEGG: pol:Bpro_1338 protein serine/threonine phosphatases
YP_998881.1	PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pol:Bpro_1337 serine/threonine protein kinase
YP_998882.1	PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: rfr:Rfer_1626 conserved hypothetical protein 255
YP_998883.1	PFAM: phage integrase family protein; KEGG: sbo:SBO_3647 putative integrase
YP_998884.1	KEGG: plu:plu2422 hypothetical protein
YP_998885.1	TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; KEGG: rme:Rmet_2344 excisionase/Xis, DNA-binding
YP_998886.1	KEGG: rme:Rmet_2343 hypothetical protein
YP_998888.1	KEGG: dar:Daro_2531 phage integrase, N-terminal SAM-like
YP_998890.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: net:Neut_2415 filamentation induced by cAMP protein Fic
YP_998891.1	PFAM: type III restriction enzyme, res subunit; KEGG: sfu:Sfum_2855 type III restriction enzyme, res subunit
YP_998892.1	KEGG: mgm:Mmc1_0133 DNA-damage-inducible protein D
YP_998893.1	KEGG: xoo:XOO4599 hypothetical protein
YP_998894.1	KEGG: xom:XOO_4334 hypothetical protein
YP_998895.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sfu:Sfum_2856 DNA methylase N-4/N-6 domain protein
YP_998896.1	PFAM: SMC domain protein; KEGG: cte:CT0993 hypothetical protein
YP_998897.1	PFAM: UvrD/REP helicase; KEGG: sfu:Sfum_2859 UvrD/REP helicase
YP_998898.1	KEGG: bps:BPSL1157 putative phage integrase
YP_998899.1	KEGG: cvi:CV3851 probable prophage integrase
YP_998900.1	KEGG: eba:ebA1507 hypothetical protein
YP_998901.1	KEGG: plt:Plut_0831 hypothetical protein
YP_998902.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_998903.1	KEGG: eca:ECA3852 DNA polymerase II
YP_998904.1	KEGG: pau:PA14_40120 DNA polymerase II
YP_998905.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_998906.1	PFAM: carboxyl transferase; KEGG: reh:H16_A2144 propionyl-CoA carboxylase beta chain
YP_998907.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A2140 probable extra-cytoplasmic solute receptor
YP_998908.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4711 probable enoyl-CoA hydratase
YP_998909.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reh:H16_A2143 acyl-CoA dehydrogenase, long-chain specific
YP_998910.1	PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reh:H16_A2142 acetyl-CoA carboxylase alpha chain
YP_998911.1	PFAM: protein of unknown function DUF1446; KEGG: reh:H16_A2141 hypothetical protein
YP_998912.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_A2140 probable extra-cytoplasmic solute receptor
YP_998913.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reh:H16_A2139 transcriptional regulator, LysR family
YP_998914.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B2003 predicted acyl-CoA transferase/carnitine dehydratase
YP_998915.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_A2138 enoyl-CoA hydratase/carnithine racemase
YP_998916.1	KEGG: bbr:BB2774 putative ketoacyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_998917.1	KEGG: rpd:RPD_2474 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_998918.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5055 uncharacterized protein UPF0065
YP_998919.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pau:PA14_32700 probable transcriptional regulator
YP_998920.1	catalyzes the formation of L-proline from L-ornithine
YP_998921.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; Oxidoreductase FAD-binding domain protein; KEGG: bur:Bcep18194_C6878 molybdopterin oxidoreductase
YP_998922.1	PFAM: short chain fatty acid transporter; KEGG: reu:Reut_B5759 short chain fatty acid transporter
YP_998923.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_998924.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: dar:Daro_1342 helix-turn-helix, AraC type
YP_998925.1	KEGG: reh:H16_A3489 transcriptional regulator, AraC-family
YP_998926.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: dar:Daro_3790 regulatory protein GntR, HTH:GntR, C-terminal
YP_998927.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B2005 probable extra-cytoplasmic solute receptor
YP_998928.1	PFAM: Asp/Glu racemase; KEGG: rso:RSc1822 probable maleate cis-trans isomerase protein
YP_998929.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rso:RSc1823 probable nitrilase protein
YP_998930.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0990 ABC transporter related
YP_998931.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr1066 ABC transporter ATP-binding protein
YP_998932.1	PFAM: inner-membrane translocator; KEGG: bja:blr1065 ABC transporter permease protein
YP_998933.1	PFAM: inner-membrane translocator; KEGG: bja:blr1064 ABC transporter permease protein
YP_998934.1	PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_4043 extracellular ligand-binding receptor
YP_998935.1	PFAM: thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rxy:Rxyl_2271 thiamine pyrophosphate enzyme-like TPP binding region
YP_998936.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rso:RSc1824 hypothetical protein
YP_998937.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: rso:RSc1825 putative dioxygenase oxidoreductase protein
YP_998938.1	KEGG: rso:RSc1820 hypothetical protein
YP_998939.1	KEGG: pol:Bpro_3196 putative transposase
YP_998941.1	Essential for recycling GMP and indirectly, cGMP
YP_998942.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_998943.1	KEGG: pol:Bpro_1333 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region
YP_998944.1	PFAM: protein of unknown function DUF55; KEGG: ret:RHE_CH00838 hypothetical protein
YP_998945.1	PFAM: phosphoglucose isomerase (PGI); N-acylglucosamine 2-epimerase; KEGG: rfr:Rfer_1127 glucose-6-phosphate isomerase
YP_998946.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_998947.1	KEGG: rfr:Rfer_3305 DedA protein (DSG-1 protein)
YP_998948.1	TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: pol:Bpro_3209 DNA mismatch repair protein MutL
YP_998949.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3211 drug resistance transporter Bcr/CflA subfamily
YP_998950.1	KEGG: pol:Bpro_3212 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase
YP_998951.1	PFAM: metallophosphoesterase; KEGG: rfr:Rfer_1344 UDP-2,3-diacylglucosamine hydrolase
YP_998952.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rfr:Rfer_1345 peptidylprolyl isomerase
YP_998953.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rso:RSc1165 probable peptidyl-prolyl cis-trans isomerase A (PPIase A)(rotamase A)(CypH) signal peptide protein
YP_998954.1	KEGG: pol:Bpro_3349 hypothetical protein
YP_998956.1	KEGG: rfr:Rfer_1824 hypothetical protein
YP_998957.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_998958.1	KEGG: cch:Cag_1302 ATPase-like
YP_998959.1	KEGG: cch:Cag_1303 hypothetical protein
YP_998960.1	TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_1963 uracil phosphoribosyltransferase
YP_998961.1	PFAM: protein of unknown function DUF28; KEGG: rfr:Rfer_2075 protein of unknown function DUF28
YP_998962.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_998963.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_998965.1	TIGRFAM: outer membrane protein; KEGG: neu:NE0161 hemolysin-type calcium-binding region:RTX N-terminal domain
YP_998966.1	KEGG: rfr:Rfer_1693 hypothetical protein
YP_998967.1	PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase
YP_998969.1	PFAM: glycine hydroxymethyltransferase; KEGG: rfr:Rfer_2658 glycine hydroxymethyltransferase
YP_998970.1	PFAM: ATP-cone domain protein; KEGG: pol:Bpro_2875 protein of unknown function DUF193
YP_998971.1	PFAM: inositol monophosphatase; KEGG: rfr:Rfer_2892 inositol-1(or 4)-monophosphatase
YP_998972.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_3292 RNA methyltransferase TrmH, group 1
YP_998973.1	KEGG: pol:Bpro_0412 hypothetical protein
YP_998974.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpa:BPP2432 putative ABC transport ATP-binding subunit
YP_998975.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_1616 binding-protein-dependent transport systems inner membrane component
YP_998976.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB1883 putative integral membrane transport protein
YP_998977.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bbr:BB1884 putative solute-binding transport protein (periplasmic)
YP_998978.1	PFAM: regulatory protein, TetR; KEGG: bja:bll1463 transcriptional regulatory protein
YP_998979.1	KEGG: eba:ebA5427 putative hydrolase/peptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_998981.1	TIGRFAM: serine O-acetyltransferase; KEGG: pol:Bpro_3291 serine O-acetyltransferase
YP_998982.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: pol:Bpro_3289 molybdopterin binding domain
YP_998983.1	PFAM: protein of unknown function DUF615; KEGG: rfr:Rfer_2888 protein of unknown function DUF615
YP_998984.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rfr:Rfer_2887 peptidase U62, modulator of DNA gyrase
YP_998985.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3576 altronate dehydratase
YP_998986.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3575 uncharacterized protein UPF0065
YP_998987.1	PFAM: protein of unknown function DUF453; KEGG: bbr:BB3558 hypothetical protein
YP_998988.1	PFAM: protein of unknown function DUF35; KEGG: bbr:BB4332 hypothetical protein
YP_998989.1	KEGG: bbr:BB4331 hypothetical protein
YP_998990.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: eba:c2A309 putative E-phenylitaconyl-CoA hydratase
YP_998991.1	PFAM: MmgE/PrpD family protein; KEGG: bbr:BB2350 hypothetical protein
YP_998992.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4334 putative subunit of succinyl-CoA:benzylsuccinate CoA-transferase
YP_998993.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4333 putative subunit of succinyl-CoA:benzylsuccinate CoA-transferase
YP_998994.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065
YP_998996.1	KEGG: xfa:XFa0023 hypothetical protein
YP_998997.1	PFAM: PilT protein domain protein; SMART: Nucleotide binding protein, PINc; KEGG: xfa:XFa0022 hypothetical protein
YP_998998.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_3196 putative transposase
YP_999000.1	PFAM: alpha/beta hydrolase fold; KEGG: sdn:Sden_1212 alpha/beta hydrolase fold
YP_999001.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rso:RS03115 probable transmembrane protein
YP_999002.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5061 uncharacterized protein UPF0065
YP_999003.1	KEGG: bxe:Bxe_B0701 succinate-semialdehyde dehydrogenase (NAD(P)+)
YP_999004.1	PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2748 long-chain-fatty-acid-CoA ligase
YP_999005.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: reh:H16_B1851 glucose-methanol-choline oxidoreductase
YP_999006.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reh:H16_B1852 MFS transporter, MHS family
YP_999007.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_A1470 binding-protein-dependent transport systems inner membrane component
YP_999008.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A1471 ABC transporter related
YP_999009.1	KEGG: reh:H16_B0888 ABC-type transporter, periplasmic component: TauT family; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3
YP_999010.1	PFAM: regulatory protein GntR, HTH; KEGG: reh:H16_B1891 transcriptional regulator, MocR family
YP_999011.1	PFAM: FAD dependent oxidoreductase; KEGG: reu:Reut_B3750 FAD dependent oxidoreductase
YP_999012.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rpa:RPA0102 putative ABC transporter oligopeptide-binding protein
YP_999013.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_0131 binding-protein-dependent transport systems inner membrane component
YP_999014.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_0130 binding-protein-dependent transport systems inner membrane component
YP_999015.1	KEGG: dde:Dde_1182 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_999016.1	KEGG: sil:SPO0664 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_999017.1	PFAM: Amidohydrolase 3; KEGG: bpa:BPP0478 hypothetical protein
YP_999018.1	PFAM: cobalamin synthesis protein, P47K; KEGG: rpb:RPB_0133 cobalamin synthesis protein, P47K
YP_999019.1	PFAM: transposase, IS4 family protein; KEGG: eba:ebA5346 transposase (IS4), fragment
YP_999020.1	KEGG: pol:Bpro_0722 transcriptional regulator, LysR family
YP_999021.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sco:SCO0360 probable DNA-binding, LacI family, regulator
YP_999022.1	KEGG: reh:H16_B0324 fumarylacetoacetate hydrolase
YP_999023.1	KEGG: nmu:Nmul_A2649 IS298, transposase OrfA
YP_999024.1	PFAM: transposase, IS4 family protein; KEGG: nmu:Nmul_A2650 transposase, IS4
YP_999025.1	PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: pol:Bpro_2448 muramoyltetrapeptide carboxypeptidase
YP_999026.1	PFAM: peptidase S45, penicillin amidase; KEGG: pol:Bpro_2452 penicillin amidase
YP_999027.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_3328 acyl-CoA dehydrogenase-like
YP_999028.1	PFAM: aminoglycoside phosphotransferase; KEGG: rfr:Rfer_3327 aminoglycoside phosphotransferase
YP_999029.1	PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_2959 transcriptional regulator, Crp/Fnr family
YP_999032.1	KEGG: rfr:Rfer_2467 thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_999033.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_999034.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: rfr:Rfer_2465 thiamine biosynthesis protein ThiS
YP_999035.1	PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_2464 FAD dependent oxidoreductase
YP_999036.1	KEGG: mfa:Mfla_0997 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1
YP_999037.1	PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2462 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_999038.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_2334 4Fe-4S ferredoxin, iron-sulfur binding
YP_999040.1	KEGG: rpe:RPE_4476 HipA domain protein
YP_999041.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bch:Bcen2424_1966 transcriptional regulator, GntR family
YP_999042.1	PFAM: polysaccharide deacetylase; KEGG: rde:RD1_2421 polysaccharide deacetylase family protein, putative
YP_999043.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2407 ABC transporter, permease protein, putative
YP_999044.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2408 spermidine/putrescine ABC transporter, permease protein, putative
YP_999045.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rde:RD1_2409 spermidine/putrescine ABC transporter, ATP-binding protein
YP_999046.1	KEGG: rde:RD1_2410 spermidine/putrescine ABC transporter, substrate-binding protein
YP_999047.1	PFAM: inner-membrane translocator; KEGG: rru:Rru_A1335 inner-membrane translocator
YP_999048.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20316 putative ABC transporter periplasmic sugar-binding protein
YP_999049.1	KEGG: sme:SMb20316 putative ABC transporter periplasmic sugar-binding protein
YP_999050.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A1337 ABC transporter component
YP_999051.1	PFAM: inner-membrane translocator; KEGG: rru:Rru_A1338 inner-membrane translocator
YP_999052.1	KEGG: rfr:Rfer_2460 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding
YP_999053.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_999054.1	PFAM: phosphoadenosine phosphosulfate reductase; KEGG: rfr:Rfer_2458 phosphoadenylyl-sulfate reductase (thioredoxin)
YP_999055.1	KEGG: bxe:Bxe_B0921 hypothetical protein
YP_999056.1	PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bxe:Bxe_B0922 putative nitrite/sulfite reductase
YP_999057.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sco:SCO7308 putative membrane transport protein
YP_999058.1	KEGG: pol:Bpro_0193 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein
YP_999059.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 major facilitator superfamily MFS_1
YP_999061.1	KEGG: ecs:ECs2280 hypothetical protein
YP_999062.1	PFAM: plasmid stabilization system; KEGG: ecs:ECs2281 hypothetical protein
YP_999063.1	TIGRFAM: outer membrane protein; KEGG: pen:PSEEN0746 hypothetical protein
YP_999065.1	KEGG: pfo:Pfl_0160 glycosyl hydrolase, BNR repeat
YP_999066.1	KEGG: rfr:Rfer_1693 hypothetical protein
YP_999068.1	PFAM: protein of unknown function DUF891; KEGG: mes:Meso_3839 protein of unknown function DUF891
YP_999069.1	KEGG: eba:ebA101 hypothetical protein
YP_999070.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pol:Bpro_3130 sulfatase
YP_999071.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_999072.1	TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: pol:Bpro_3603 succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_999073.1	KEGG: pol:Bpro_3602 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_999074.1	KEGG: pol:Bpro_3601 succinate dehydrogenase, cytochrome b subunit
YP_999075.1	PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pol:Bpro_3600 succinate dehydrogenase, cytochrome b subunit
YP_999076.1	PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pol:Bpro_3599 transcriptional regulator, GntR family
YP_999077.1	catalyzes the oxidation of malate to oxaloacetate
YP_999078.1	KEGG: rfr:Rfer_1805 hypothetical protein
YP_999079.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_999080.1	KEGG: rfr:Rfer_1331 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_999081.1	TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: rfr:Rfer_1332 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_999082.1	KEGG: pol:Bpro_2715 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase
YP_999083.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_2714 periplasmic sensor signal transduction histidine kinase
YP_999084.1	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation
YP_999085.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_999086.1	PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_2070 alpha/beta hydrolase
YP_999087.1	KEGG: rfr:Rfer_2071 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein
YP_999089.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bur:Bcep18194_A4575 transcriptional regulator, RpiR family
YP_999090.1	PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2018 squalene/phytoene synthase
YP_999091.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_999092.1	KEGG: rfr:Rfer_1554 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP
YP_999093.1	binds and unfolds substrates as part of the ClpXP protease
YP_999094.1	KEGG: pol:Bpro_2032 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_999095.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_999096.1	PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: pol:Bpro_0806 imidazoleglycerol-phosphate dehydratase
YP_999097.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_999098.1	TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis; KEGG: pol:Bpro_0808 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
YP_999099.1	TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; KEGG: pol:Bpro_0809 imidazoleglycerol phosphate synthase, cyclase subunit
YP_999100.1	KEGG: pfl:PFL_4674 helicase, SNF2 family
YP_999101.1	PFAM: thioesterase superfamily protein; KEGG: pfl:PFL_2301 thioesterase family protein
YP_999102.1	PFAM: transposase, IS4 family protein; KEGG: nmu:Nmul_A2650 transposase, IS4
YP_999103.1	KEGG: nmu:Nmul_A2649 IS298, transposase OrfA
YP_999104.1	KEGG: ana:alr2678 probable acyl-CoA synthase
YP_999105.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: eli:ELI_12510 hypothetical protein
YP_999106.1	KEGG: rfr:Rfer_2951 imidazoleglycerol phosphate synthase, cyclase subunit
YP_999107.1	PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2700 hypothetical protein
YP_999108.1	PFAM: Transthyretin; KEGG: pol:Bpro_1426 transthyretin
YP_999109.1	PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1424 polysaccharide deacetylase
YP_999110.1	putative bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia
YP_999111.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
YP_999112.1	KEGG: rpc:RPC_2961 putative flavoprotein involved in K+ transport
YP_999113.1	KEGG: sgl:SG0934 hypothetical protein
YP_999114.1	KEGG: sgl:SG0934 hypothetical protein
YP_999115.1	PFAM: flagellin domain protein; KEGG: rfr:Rfer_0631 flagellin-like
YP_999116.1	KEGG: noc:Noc_2367 flagellin
YP_999117.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: rfr:Rfer_0632 flagellar hook-associated 2-like
YP_999118.1	PFAM: flagellin domain protein; KEGG: noc:Noc_2367 flagellin
YP_999119.1	PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: noc:Noc_2367 flagellin
YP_999120.1	KEGG: bur:Bcep18194_A3340 TPR repeat protein
YP_999121.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bja:blr3685 transcriptional regulatory protein
YP_999122.1	TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: bur:Bcep18194_C6575 manganese/iron transporter, NRAMP family
YP_999124.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth
YP_999125.1	PFAM: protein of unknown function DUF59; KEGG: bja:blr3682 hypothetical protein
YP_999126.1	PFAM: amidohydrolase 2; KEGG: bja:blr3681 hypothetical protein
YP_999128.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_999129.1	PFAM: monooxygenase component MmoB/DmpM; KEGG: bja:blr3680 hypothetical protein
YP_999130.1	PFAM: methane/phenol/toluene hydroxylase; KEGG: bja:blr3679 putative monooxygenase component
YP_999131.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bja:blr3678 putative oxidoreductase
YP_999132.1	PFAM: methane/phenol/toluene hydroxylase; KEGG: bja:blr3677 putative monooxygenase component
YP_999133.1	KEGG: rsp:RSP_6076 hypothetical protein
YP_999134.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr3675 putative alcohol dehydrogenase
YP_999135.1	PFAM: Cephalosporin hydroxylase; KEGG: sme:SMb21425 hypothetical protein
YP_999136.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sme:SMb21426 putative sugar nucleotide oxidoreductaseepimerase protein
YP_999137.1	KEGG: sme:SMb21427 putative acetyltransferase protein
YP_999138.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; KEGG: syn:slr1610 hypothetical protein
YP_999139.1	PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: pat:Patl_3061 dTDP-4-dehydrorhamnose 3,5-epimerase
YP_999140.1	TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: aha:AHA_4165 CDP-glucose 4,6-dehydratase
YP_999141.1	TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: aha:AHA_4166 glucose-1-phosphate cytidylyltransferase
YP_999142.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: rfr:Rfer_3702 MotA/TolQ/ExbB proton channel
YP_999143.1	PFAM: OmpA/MotB domain protein; KEGG: rfr:Rfer_3703 OmpA/MotB
YP_999144.1	PFAM: response regulator receiver; KEGG: rfr:Rfer_3704 response regulator receiver domain protein
YP_999145.1	PFAM: Chemotaxis phosphatase, CheZ; KEGG: rfr:Rfer_3705 chemotaxis phosphatase, CheZ
YP_999146.1	PFAM: basic membrane lipoprotein; KEGG: reu:Reut_B3989 twin-arginine translocation pathway signal
YP_999147.1	PFAM: purine and other phosphorylases, family 1; KEGG: ccr:CC2266 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase
YP_999148.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_B3990 ABC transporter related
YP_999149.1	PFAM: inner-membrane translocator; KEGG: reu:Reut_B3991 inner-membrane translocator
YP_999150.1	PFAM: inner-membrane translocator; KEGG: reu:Reut_B3992 inner-membrane translocator
YP_999151.1	Catalyzes the deamination of cytosine to uracil and ammonia
YP_999152.1	TIGRFAM: outer membrane protein; KEGG: neu:NE0161 hemolysin-type calcium-binding region:RTX N-terminal domain
YP_999154.1	TIGRFAM: outer membrane protein; KEGG: neu:NE0161 hemolysin-type calcium-binding region:RTX N-terminal domain
YP_999155.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_999156.1	KEGG: mma:MM0171 transposase
YP_999157.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4285 transcriptional regulator, LysR family
YP_999158.1	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate
YP_999159.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rfr:Rfer_0372 methylmalonate-semialdehyde dehydrogenase
YP_999161.1	PFAM: class II aldolase/adducin family protein; KEGG: rme:Rmet_4212 class II aldolase/adducin-like protein
YP_999162.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4213 uncharacterized protein UPF0065
YP_999163.1	TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; KEGG: pfl:PFL_0495 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase
YP_999164.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_0399 transcriptional regulator, AsnC family
YP_999166.1	PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_2929 major facilitator family transporter
YP_999167.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pol:Bpro_1820 exodeoxyribonuclease III (xth)
YP_999168.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_999169.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bpm:BURPS1710b_3030 transcriptional activator protein
YP_999170.1	PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rru:Rru_A2316 transcriptional regulator, XRE family
YP_999171.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_999172.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_999173.1	TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: rfr:Rfer_2944 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_999174.1	PFAM: BolA family protein; KEGG: pol:Bpro_0801 BolA-like protein
YP_999175.1	PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0800 ABC-2
YP_999176.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2941 ABC transporter related
YP_999177.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_3016 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
YP_999178.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_999179.1	PFAM: peptidase M22, glycoprotease; KEGG: rfr:Rfer_0189 peptidase M22, glycoprotease
YP_999180.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4620 ribosomal-protein-alanine acetyltransferase
YP_999181.1	KEGG: pol:Bpro_4619 phage SPO1 DNA polymerase-related protein
YP_999182.1	KEGG: rfr:Rfer_2201 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like
YP_999183.1	SMART: ZipA, C-terminal FtsZ-binding region; KEGG: rfr:Rfer_2200 hypothetical protein
YP_999184.1	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: rfr:Rfer_2199 chromosome segregation protein SMC
YP_999185.1	PFAM: FAD dependent oxidoreductase; KEGG: mes:Meso_0126 FAD dependent oxidoreductase
YP_999186.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bch:Bcen2424_6647 ABC transporter related
YP_999187.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bch:Bcen2424_6646 ABC transporter related
YP_999188.1	PFAM: inner-membrane translocator; KEGG: bch:Bcen2424_6645 inner-membrane translocator
YP_999189.1	PFAM: inner-membrane translocator; KEGG: bam:Bamb_3391 inner-membrane translocator
YP_999190.1	PFAM: Extracellular ligand-binding receptor; KEGG: bch:Bcen2424_6643 extracellular ligand-binding receptor
YP_999191.1	PFAM: Asp/Glu racemase; KEGG: bch:Bcen2424_6640 Asp/Glu racemase
YP_999192.1	PFAM: FAD dependent oxidoreductase; KEGG: bch:Bcen2424_6641 FAD dependent oxidoreductase
YP_999193.1	PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_3393 endoribonuclease L-PSP
YP_999194.1	KEGG: bxe:Bxe_C0614 putative oxidoreductase
YP_999195.1	TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; KEGG: rfr:Rfer_1692 sigma 32 (RpoH)
YP_999196.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_999197.1	PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_1691 uncharacterized protein UPF0065
YP_999198.1	PFAM: Patatin; KEGG: rfr:Rfer_3273 patatin
YP_999199.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_999200.1	KEGG: rfr:Rfer_2766 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_999201.1	KEGG: pol:Bpro_2940 ATPase AAA-2; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase
YP_999202.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_999203.1	KEGG: rfr:Rfer_2040 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein
YP_999204.1	KEGG: rfr:Rfer_2315 putative transmembrane protein
YP_999205.1	SMART: helicase c2; KEGG: rfr:Rfer_2316 helicase C2
YP_999206.1	SMART: protein phosphatase 2C domain protein; KEGG: rfr:Rfer_2317 protein serine/threonine phosphatases
YP_999208.1	KEGG: sil:SPO1461 hypothetical protein
YP_999209.1	PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_1026 FAD linked oxidase-like
YP_999210.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: eba:ebA2047 transcriptional regulator, GntR family
YP_999211.1	PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll5441 ABC transporter, periplasmic peptide-binding protein
YP_999212.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5440 ABC transporter, permease protein
YP_999213.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5439 ABC transporter, permease protein
YP_999214.1	KEGG: sit:TM1040_3115 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_999215.1	PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_01471 spermidine/putrescine-binding periplasmic protein
YP_999216.1	PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_01471 spermidine/putrescine-binding periplasmic protein
YP_999217.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rde:RD1_3860 racemase, putative
YP_999218.1	PFAM: aldehyde dehydrogenase; KEGG: sit:TM1040_0847 betaine-aldehyde dehydrogenase
YP_999219.1	KEGG: mag:amb0929 hypothetical protein
YP_999220.1	KEGG: bms:BRA0375 hypothetical protein
YP_999221.1	KEGG: pol:Bpro_3196 putative transposase
YP_999222.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: jan:Jann_1397 transcriptional regulator, LacI family
YP_999223.1	PFAM: NLPA lipoprotein; KEGG: rso:RS03032 putative periplasmic substrate-binding transmembrane protein
YP_999224.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3154 ABC nitrate/sulfonate/bicarbonate transporter family, ATPase subunit
YP_999225.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B2217 ABC-type transporter, permease component
YP_999227.1	PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: hma:rrnB0209 acetolactate synthase large subunit
YP_999228.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mpa:MAP2526c hypothetical protein
YP_999229.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065
YP_999230.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bpe:BP0859 3-ketoacyl-(acyl-carrier-protein) reductase
YP_999232.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_5109 transcriptional regulator, LacI family
YP_999233.1	PFAM: extracellular solute-binding protein, family 1; KEGG: hwa:HQ1992A ABC-type sugar/sn-glycerol-3-phosphate transport system, periplasmic protein
YP_999234.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hwa:HQ1991A ABC-type sugar/sn-glycerol-3-phosphate transport system, periplasmic protein
YP_999235.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hwa:HQ1990A ABC-type sugar/sn-glycerol-3-phosphate transport system, periplasmic protein
YP_999236.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: jan:Jann_3680 glucose-methanol-choline oxidoreductase
YP_999237.1	PFAM: aldehyde dehydrogenase; KEGG: psp:PSPPH_2572 succinate-semialdehyde dehydrogenase (NADP+)
YP_999238.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bja:blr3917 ABC transporter ATP-binding protein
YP_999239.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: pol:Bpro_5110 FAD dependent oxidoreductase
YP_999240.1	PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: pol:Bpro_5111 dihydroxy-acid and 6-phosphogluconate dehydratase
YP_999241.1	PFAM: Integrase, catalytic region; KEGG: psb:Psyr_3810 integrase, catalytic region
YP_999242.1	PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911
YP_999243.1	KEGG: rso:RSc0892 putative phage-related protein
YP_999244.1	PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr0503 hypothetical protein
YP_999245.1	PFAM: Pyridoxal-dependent decarboxylase; KEGG: sus:Acid_7941 pyridoxal-dependent decarboxylase
YP_999247.1	KEGG: sco:SCO5300 hypothetical protein
YP_999248.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase
YP_999249.1	KEGG: bpm:BURPS1710b_1746 Fels-1 prophage
YP_999250.1	PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_0572 protein of unknown function DUF182
YP_999251.1	PFAM: carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G
YP_999252.1	PFAM: VWA containing CoxE family protein; KEGG: pol:Bpro_0574 VWA containing CoxE-like
YP_999253.1	PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_0575 ATPase associated with various cellular activities, AAA_5
YP_999254.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: mes:Meso_3965 malate/L-lactate dehydrogenase
YP_999255.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3009 protein of unknown function DUF112, transmembrane
YP_999256.1	KEGG: pol:Bpro_3010 hypothetical protein
YP_999257.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3011 twin-arginine translocation pathway signal
YP_999258.1	PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: pol:Bpro_0576 molybdopterin dehydrogenase, FAD-binding
YP_999259.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pol:Bpro_0577 carbon-monoxide dehydrogenase
YP_999260.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_0578 (2Fe-2S)-binding
YP_999261.1	PFAM: regulatory protein, LysR; KEGG: rfr:Rfer_2857 putative transcriptional regulator, ModE family
YP_999263.1	PFAM: extracellular solute-binding protein, family 1; KEGG: sco:SCO7167 putative secreted sugar-binding protein
YP_999264.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7166 putative sugar-transporter integral membrane protein
YP_999265.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO0354 putative binding-protein-dependent transport protein
YP_999266.1	KEGG: aba:Acid345_0655 hypothetical protein
YP_999267.1	PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4534 beta-lactamase-like
YP_999268.1	This protein performs the mismatch recognition step during the DNA repair process
YP_999269.1	PFAM: diaminopimelate epimerase; KEGG: pol:Bpro_1058 diaminopimelate epimerase
YP_999270.1	KEGG: rfr:Rfer_3443 hypothetical protein
YP_999271.1	PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rfr:Rfer_3442 phage integrase
YP_999272.1	PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rfr:Rfer_3439 cobalamin synthesis protein, P47K
YP_999273.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: rfr:Rfer_3438 transcriptional regulators, TraR/DksA family
YP_999274.1	KEGG: pol:Bpro_1065 hypothetical protein
YP_999275.1	heat shock protein involved in degradation of misfolded proteins
YP_999276.1	heat shock protein involved in degradation of misfolded proteins
YP_999277.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_999278.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rfr:Rfer_3433 methyltransferase
YP_999279.1	PFAM: cell division protein FtsL; KEGG: rfr:Rfer_3432 cell division protein, FtsL -like
YP_999280.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_1069 peptidoglycan glycosyltransferase
YP_999281.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_999282.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1071 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase
YP_999283.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_999284.1	TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_3427 UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_999285.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: pol:Bpro_1074 cell cycle protein
YP_999286.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_999287.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_999288.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_999289.1	PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: rfr:Rfer_3422 cell division protein FtsQ
YP_999290.1	PFAM: cell division protein FtsA; KEGG: rfr:Rfer_3421 cell division protein FtsA
YP_999291.1	TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: pol:Bpro_1080 cell division protein FtsZ
YP_999292.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bpm:BURPS1710b_A1724 transcriptional regulator, LysR family
YP_999293.1	PFAM: LamB/YcsF family protein; KEGG: bpm:BURPS1710b_A1723 LamB/YcsF family protein
YP_999294.1	PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rfr:Rfer_0129 biotin/lipoyl attachment
YP_999295.1	PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bpm:BURPS1710b_A1721 acetyl-CoA carboxylase
YP_999296.1	PFAM: Allophanate hydrolase subunit 1; KEGG: bpm:BURPS1710b_A1720 allophanate hydrolase, subunit 1
YP_999297.1	KEGG: rfr:Rfer_0126 allophanate hydrolase; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2
YP_999298.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B0100 major facilitator superfamily (MFS_1) transporter
YP_999299.1	PFAM: TatD-related deoxyribonuclease; KEGG: rfr:Rfer_3221 TatD-related deoxyribonuclease
YP_999300.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_B2439 sigma54 specific transcriptional regulator with GAF sensor, fis family
YP_999301.1	KEGG: bam:Bamb_1133 histone deacetylase superfamily
YP_999302.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: neu:NE2505 hypothetical protein
YP_999304.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0142 transcriptional regulator, RpiR family
YP_999305.1	PFAM: peptidase T2, asparaginase 2; KEGG: pol:Bpro_0141 peptidase T2, asparaginase 2
YP_999306.1	KEGG: pol:Bpro_0140 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_999307.1	PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_0139 extracellular solute-binding protein, family 5
YP_999308.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0138 binding-protein-dependent transport systems inner membrane component
YP_999309.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0137 binding-protein-dependent transport systems inner membrane component
YP_999310.1	PFAM: peptidase S58, DmpA; KEGG: rfr:Rfer_3106 peptidase S58, DmpA
YP_999311.1	PFAM: peptidase M55, D-aminopeptidase; KEGG: pol:Bpro_0135 peptidase M55, D-aminopeptidase
YP_999312.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_999313.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0579 uncharacterized protein UPF0065
YP_999314.1	PFAM: fumarate lyase; KEGG: bja:bll7942 probable 3-carboxy-cis,cis-muconate cycloisomerase
YP_999315.1	PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: rfr:Rfer_0013 transcriptional regulator, GntR family
YP_999316.1	PFAM: regulatory protein, LysR; KEGG: bbr:BB1024 LysR-family transcriptional regulator
YP_999317.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bch:Bcen2424_3472 transposase IS116/IS110/IS902 family protein
YP_999318.1	PFAM: ferredoxin; KEGG: eli:ELI_01725 ferredoxin
YP_999319.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hne:HNE_1888 pyridine nucleotide-disulfide oxidoreductase
YP_999320.1	PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: rha:RHA1_ro10198 aromatic ring dioxygenase beta subunit
YP_999321.1	PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_B2752 putative terephthalate 1,2-dioxygenase, large subunit (TphA1)
YP_999322.1	PFAM: ABC transporter related; KEGG: pol:Bpro_5131 ABC transporter related
YP_999323.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_5130 ABC transporter related
YP_999324.1	PFAM: inner-membrane translocator; KEGG: bbr:BB4420 probable branched-chain amino acid transport system, permease component
YP_999325.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_5128 inner-membrane translocator
YP_999326.1	PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_4043 extracellular ligand-binding receptor
YP_999327.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase
YP_999328.1	PFAM: Antibiotic biosynthesis monooxygenase; Stress responsive alpha-beta barrel domain protein; KEGG: bja:bll2683 hypothetical protein
YP_999329.1	PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; KEGG: reu:Reut_B4137 catechol 1,2-dioxygenase
YP_999330.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_B4131 regulatory protein, LysR:LysR, substrate-binding
YP_999332.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB1091 LysR-family transcriptional regulator
YP_999333.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB1090 hypothetical protein
YP_999334.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_999335.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: fal:FRAAL3976 putative acyl-CoA dehydrogenase
YP_999336.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro04596 acyl-CoA dehydrogenase
YP_999337.1	PFAM: coenzyme A transferase; KEGG: bxe:Bxe_B0644 3-oxoadipate CoA-transferase subunit B (PcaJ)
YP_999338.1	TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: rpc:RPC_1076 3-oxoacid CoA-transferase, subunit A
YP_999339.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:bll2957 putative short-chain dehydrogenase
YP_999340.1	KEGG: rme:Rmet_5111 thiolase
YP_999341.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5113 uncharacterized protein UPF0065
YP_999342.1	KEGG: rfr:Rfer_1155 Cl-channel, voltage gated
YP_999344.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mes:Meso_2887 fumarylacetoacetate (FAA) hydrolase
YP_999345.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_B2527 hypothetical protein
YP_999346.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0112 hypothetical protein
YP_999347.1	PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: bur:Bcep18194_A4123 monooxygenase, FAD-binding
YP_999348.1	PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: bxe:Bxe_A2728 transcriptional regulator, LuxR family
YP_999349.1	KEGG: pol:Bpro_3196 putative transposase
YP_999350.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_4033 transcriptional regulator, LysR family
YP_999351.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B3707 L-carnitine dehydratase/bile acid-inducible protein F
YP_999352.1	PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: reh:H16_B0926 conserved hypothetical protein
YP_999353.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3705 hypothetical protein
YP_999354.1	KEGG: rpb:RPB_3612 transcriptional regulator, MarR family
YP_999355.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4223 uncharacterized protein UPF0065
YP_999356.1	KEGG: rme:Rmet_4228 transposase, IS4
YP_999357.1	KEGG: hch:HCH_01299 AraC-type DNA-binding domain-containing protein
YP_999358.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bch:Bcen2424_6630 transcriptional regulator, LysR family
YP_999359.1	KEGG: pol:Bpro_3679 porin, gram-negative type
YP_999360.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pae:PA1204 hypothetical protein
YP_999361.1	PFAM: Extracellular ligand-binding receptor; KEGG: bpa:BPP2154 putative amino acid ABC transport system, substrate-binding protein
YP_999362.1	PFAM: inner-membrane translocator; KEGG: bja:bll7932 ABC transporter permease protein
YP_999363.1	PFAM: inner-membrane translocator; KEGG: dvu:DVU0549 high-affinity branched-chain amino acid ABC transporter, permease protein
YP_999364.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb1673 ABC-type branched-chain amino acid transport systems
YP_999365.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stm:STM3560 ABC superfamily (atp_bind), branched-chain amino acid transporter, high-affinity
YP_999366.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_B2527 hypothetical protein
YP_999367.1	KEGG: mmc:Mmcs_1590 hypothetical protein
YP_999368.1	TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: aeh:Mlg_1228 3-isopropylmalate dehydratase, large subunit
YP_999369.1	KEGG: bbr:BB2815 putative mandelate racemase
YP_999370.1	KEGG: mpa:MAP4016c putative ketopantoate reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein
YP_999371.1	KEGG: aeh:Mlg_1229 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein
YP_999372.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A2507 hypothetical protein
YP_999373.1	KEGG: psb:Psyr_3810 integrase, catalytic region
YP_999374.1	KEGG: rpe:RPE_2494 hypothetical protein
YP_999375.1	PFAM: protein of unknown function DUF955; KEGG: neu:NE1817 hypothetical protein
YP_999376.1	PFAM: helix-turn-helix domain protein; KEGG: pol:Bpro_1545 transcriptional regulator, XRE family
YP_999377.1	KEGG: rle:pRL80011 hypothetical protein
YP_999378.1	PFAM: Patatin; KEGG: reu:Reut_C6025 patatin
YP_999379.1	KEGG: eli:ELI_04045 hypothetical protein
YP_999380.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: eli:ELI_04040 hypothetical protein
YP_999381.1	KEGG: nmu:Nmul_A2649 IS298, transposase OrfA
YP_999382.1	KEGG: neu:NE1552 transposase IS4 family
YP_999383.1	KEGG: nmu:Nmul_A2650 transposase, IS4
YP_999384.1	KEGG: gme:Gmet_0749 peptidase S8 and S53, subtilisin, kexin, sedolisin
YP_999386.1	KEGG: bja:bll0419 hypothetical protein
YP_999387.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rme:Rmet_4950 transcriptional regulator, LacI family
YP_999388.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4645 uncharacterized protein UPF0065
YP_999389.1	activates fatty acids by binding to coenzyme A
YP_999390.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rme:Rmet_4948 short-chain dehydrogenase/reductase SDR
YP_999391.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4947 uncharacterized protein UPF0065
YP_999392.1	KEGG: rme:Rmet_4946 hypothetical protein
YP_999393.1	KEGG: rme:Rmet_4953 hypothetical protein
YP_999394.1	KEGG: dar:Daro_1233 histidinol-phosphate aminotransferase
YP_999395.1	KEGG: pol:Bpro_1938 integrase, catalytic region
YP_999396.1	PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein
YP_999397.1	PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911
YP_999398.1	PFAM: Integrase, catalytic region; KEGG: psb:Psyr_3810 integrase, catalytic region
YP_999399.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reh:H16_B2188 transcriptional regulator, LysR-family
YP_999400.1	TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bpe:BP0429 delta-1-pyrroline-5-carboxylate dehydrogenase precursor
YP_999401.1	PFAM: dihydrodipicolinate synthetase; KEGG: bbr:BB1108 putative dihydrodipicolinate synthase
YP_999402.1	KEGG: bxe:Bxe_B2544 ABC spermidine/putrescine transporter, periplasmic ligand binding protein
YP_999403.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_2371 binding-protein-dependent transport systems inner membrane component
YP_999404.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B2542 ABC spermidine/putrescine transporter, inner membrane subunit
YP_999405.1	KEGG: mes:Meso_2369 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase
YP_999406.1	PFAM: FAD linked oxidase domain protein; KEGG: eba:ebA4737 FAD dependent oxidoreductase
YP_999407.1	PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: pol:Bpro_3142 electron transfer flavoprotein, alpha subunit
YP_999408.1	PFAM: electron transfer flavoprotein beta-subunit; KEGG: bbr:BB0620 electron transfer flavoprotein beta-subunit
YP_999409.1	PFAM: N-formylglutamate amidohydrolase; KEGG: bxe:Bxe_A2941 N-formylglutamate deformylase
YP_999410.1	PFAM: FAD dependent oxidoreductase; KEGG: reh:H16_B2189 D-amino-acid dehydrogenase
YP_999411.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region
YP_999412.1	PFAM: IstB ATP binding N-terminal domain protein; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein
YP_999413.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: reh:H16_A0034 transcriptional regulator, GntR-family
YP_999414.1	PFAM: Extracellular ligand-binding receptor; KEGG: bja:bll3663 ABC transporter substrate-binding protein
YP_999415.1	PFAM: inner-membrane translocator; KEGG: bja:bll3662 ABC transporter permease protein
YP_999416.1	PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3661 ABC transporter ATP-binding/permease protein
YP_999417.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rde:RD1_4159 oxidoreductase, putative
YP_999418.1	Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA
YP_999419.1	PFAM: protein of unknown function DUF849; KEGG: psb:Psyr_2185 prokaryotic protein of unknown function DUF849
YP_999420.1	KEGG: eba:ebA5346 transposase (IS4), fragment
YP_999421.1	SMART: helix-turn-helix domain protein; KEGG: ana:all1719 putative transcriptional regulator
YP_999422.1	PFAM: protein of unknown function DUF1044; KEGG: sfu:Sfum_3429 protein of unknown function DUF1044
YP_999423.1	PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911
YP_999424.1	PFAM: Integrase, catalytic region; KEGG: psb:Psyr_3810 integrase, catalytic region
YP_999425.1	TIGRFAM: phage tape measure protein; KEGG: mca:MCA2670 prophage LambdaMc01, tail tape measure protein, putative
YP_999426.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rso:RSc0872 hypothetical protein
YP_999427.1	PFAM: transferase hexapeptide repeat containing protein; PilT protein domain protein; KEGG: rso:RSc0871 putative plasmid stability-like protein
YP_999428.1	KEGG: aba:Acid345_0800 putative lipoprotein signal peptide
YP_999429.1	KEGG: nmu:Nmul_A2649 IS298, transposase OrfA
YP_999430.1	PFAM: transposase, IS4 family protein; KEGG: nmu:Nmul_A2650 transposase, IS4
YP_999431.1	PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV12514 putative acetyltransferase
YP_999432.1	KEGG: xft:PD2083 hypothetical protein
YP_999433.1	PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: bxe:Bxe_A3294 putative glutamate-tRNA synthetase
YP_999434.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: sil:SPOA0379 transcriptional regulator, GntR family
YP_999435.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_1448 transcriptional regulator, LysR family
YP_999436.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1446 binding-protein-dependent transport systems inner membrane component
YP_999437.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1445 binding-protein-dependent transport systems inner membrane component
YP_999438.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1444 ABC transporter related
YP_999439.1	PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_1443 extracellular solute-binding protein, family 5
YP_999440.1	PFAM: peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: pol:Bpro_1442 peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
YP_999441.1	KEGG: rme:Rmet_0021 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_999442.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bch:Bcen2424_1590 peptidase M20
YP_999443.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pst:PSPTO_2572 peptide ABC transporter, ATP-binding protein
YP_999444.1	KEGG: pst:PSPTO_2573 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_999445.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2574 peptide ABC transporter, permease protein
YP_999446.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2575 peptide ABC transporter, permease protein
YP_999447.1	PFAM: extracellular solute-binding protein, family 5; KEGG: psb:Psyr_2267 extracellular solute-binding protein, family 5
YP_999448.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reh:H16_B2306 transcriptional regulator, LysR-family
YP_999449.1	TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: pol:Bpro_2001 aspartate racemase
YP_999450.1	PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_2000 extracellular solute-binding protein, family 3
YP_999451.1	PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1999 D-amino-acid dehydrogenase
YP_999452.1	KEGG: bbr:BB1295 hypothetical protein
YP_999453.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bpe:BP2922 putative TonB-dependent receptor
YP_999454.1	KEGG: rfr:Rfer_0616 hypothetical protein
YP_999455.1	PFAM: small multidrug resistance protein; KEGG: reu:Reut_A2608 small multidrug resistance protein
YP_999456.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reh:H16_B1760 MFS transporter, AAHS family
YP_999457.1	PFAM: protein of unknown function DUF1445; KEGG: pol:Bpro_1776 protein of unknown function DUF1445
YP_999458.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppu:PP_4579 transcriptional regulator, LysR family
YP_999459.1	KEGG: pol:Bpro_2471 3-hydroxyisobutyrate dehydrogenase
YP_999460.1	KEGG: rso:RSc0573 probable fructose-bisphosphate aldolase protein; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase, class-II
YP_999461.1	PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pol:Bpro_4546 NAD(P)(+) transhydrogenase (AB-specific)
YP_999462.1	KEGG: pol:Bpro_4545 NAD(P) transhydrogenase, subunit alpha part 2
YP_999463.1	PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: pol:Bpro_4544 NAD(P) transhydrogenase, beta subunit
YP_999464.1	PFAM: ABC transporter related; Transport-associated OB domain protein; KEGG: pae:PA0326 spermidine/putrescine transport system ATP-binding protein
YP_999465.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA0325 spermidine/putrescine transport system permease protein
YP_999466.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA0324 spermidine/putrescine transport system permease protein
YP_999467.1	PFAM: extracellular solute-binding protein, family 1; KEGG: pau:PA14_04220 putative binding protein component of ABC transporter
YP_999468.1	PFAM: peptidase M14, carboxypeptidase A; KEGG: pol:Bpro_2152 peptidase M14, carboxypeptidase A
YP_999469.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_2169 DEAD/DEAH box helicase-like
YP_999470.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_999471.1	KEGG: rfr:Rfer_2170 hypothetical protein
YP_999472.1	KEGG: pol:Bpro_1278 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase
YP_999473.1	PFAM: peptidase M16 domain protein; KEGG: rfr:Rfer_1671 peptidase M16-like
YP_999474.1	PFAM: peptidase M16 domain protein; KEGG: rfr:Rfer_1670 peptidase M16-like
YP_999475.1	PFAM: conserved hypothetical protein 95; KEGG: rfr:Rfer_1668 conserved hypothetical protein 95
YP_999476.1	KEGG: rfr:Rfer_1667 coenzyme A biosynthesis protein; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase
YP_999477.1	catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding
YP_999478.1	KEGG: mfa:Mfla_2561 NlpA lipoprotein
YP_999480.1	PFAM: fatty acid desaturase; KEGG: nmu:Nmul_A1495 fatty acid desaturase
YP_999481.1	KEGG: rxy:Rxyl_0459 creatininase
YP_999482.1	PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_2628 protein of unknown function DUF81
YP_999483.1	PFAM: protein of unknown function DUF710; KEGG: pol:Bpro_2788 protein of unknown function DUF710
YP_999484.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cvi:CV0494 probable outer membrane receptor protein
YP_999485.1	PFAM: periplasmic binding protein; KEGG: pol:Bpro_2782 periplasmic binding protein
YP_999486.1	PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein
YP_999487.1	KEGG: pol:Bpro_2764 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YP_999488.1	TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: rfr:Rfer_2612 cobyric acid synthase CobQ
YP_999489.1	PFAM: peptidase M23B; KEGG: pen:PSEEN4398 peptidase, M23/M37 family
YP_999490.1	PFAM: O-antigen polymerase; KEGG: pol:Bpro_4673 O-antigen polymerase
YP_999491.1	KEGG: pol:Bpro_4674 methylation
YP_999492.1	KEGG: pol:Bpro_4674 methylation
YP_999493.1	PFAM: Forkhead-associated protein; KEGG: pol:Bpro_4677 FHA domain containing protein
YP_999494.1	PFAM: peptidase S49; KEGG: pol:Bpro_3656 peptidase S49
YP_999495.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3657 Rieske (2Fe-2S) region
YP_999496.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rfr:Rfer_1722 HAD-superfamily hydrolase subfamily IA, variant 3
YP_999497.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rfr:Rfer_1721 pseudouridine synthase, RluD
YP_999498.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pol:Bpro_3660 ribonuclease, Rne/Rng family
YP_999499.1	PFAM: protein of unknown function DUF328; KEGG: rfr:Rfer_2372 protein of unknown function DUF328
YP_999500.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_999501.1	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: pol:Bpro_2885 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_999502.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_999503.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: rfr:Rfer_2670 NusB antitermination factor
YP_999504.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2890 MotA/TolQ/ExbB proton channel
YP_999505.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rfr:Rfer_2673 biopolymer transport protein ExbD/TolR
YP_999506.1	TIGRFAM: TonB family protein; TonB, C-terminal domain; KEGG: rfr:Rfer_1159 TonB-like
YP_999507.1	PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31
YP_999508.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4279 hypothetical protein
YP_999509.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: mes:Meso_3537 cupin 2, conserved barrel
YP_999510.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0579 uncharacterized protein UPF0065
YP_999511.1	PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase
YP_999512.1	PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD
YP_999513.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5061 uncharacterized protein UPF0065
YP_999514.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5058 uncharacterized protein UPF0065
YP_999515.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0582 L-carnitine dehydratase/bile acid-inducible protein F
YP_999516.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0583 acyl-CoA dehydrogenase-like
YP_999517.1	KEGG: pol:Bpro_0584 hypothetical protein
YP_999518.1	PFAM: guanine-specific ribonuclease N1 and T1; KEGG: pol:Bpro_4859 guanyl-specific ribonuclease SA
YP_999519.1	KEGG: pol:Bpro_4860 hypothetical protein
YP_999520.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_999521.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_4862 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_999522.1	PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: rfr:Rfer_0098 organic solvent tolerance protein
YP_999523.1	PFAM: aminoglycoside phosphotransferase; KEGG: rfr:Rfer_0099 aminoglycoside phosphotransferase
YP_999524.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_999525.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: atc:AGR_L_113 hypothetical protein
YP_999526.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpe:RPE_2876 TRAP dicarboxylate transporter, DctP subunit
YP_999527.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_0097 short-chain dehydrogenase/reductase SDR
YP_999528.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2989 ABC transporter related
YP_999529.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2988 ABC transporter related
YP_999530.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_1620 inner-membrane translocator
YP_999531.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_1621 inner-membrane translocator
YP_999532.1	PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2984 twin-arginine translocation pathway signal
YP_999533.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_999534.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mes:Meso_2168 lysine exporter protein (LysE/YggA)
YP_999535.1	KEGG: sde:Sde_3487 hypothetical protein
YP_999536.1	PFAM: Uncharacterized protein UPF0065; KEGG: bja:blr2705 hypothetical protein
YP_999537.1	PFAM: MltA domain protein; 3D domain protein; KEGG: rfr:Rfer_0365 MltA
YP_999538.1	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4652 two component transcriptional regulator, LuxR family
YP_999539.1	KEGG: pol:Bpro_4653 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_999540.1	KEGG: rfr:Rfer_0366 hypothetical protein
YP_999541.1	PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: rfr:Rfer_0367 glutamate-ammonia-ligase adenylyltransferase
YP_999542.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_4105 secretion protein HlyD
YP_999543.1	PFAM: acriflavin resistance protein; KEGG: dar:Daro_0459 acriflavin resistance protein
YP_999545.1	PFAM: beta-lactamase domain protein; KEGG: rso:RSc2212 hypothetical protein
YP_999546.1	PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_0774 cytochrome c assembly protein
YP_999547.1	PFAM: ResB family protein; KEGG: pol:Bpro_0773 ResB-like
YP_999548.1	PFAM: cytochrome c, class I; KEGG: pol:Bpro_0772 cytochrome c, class I
YP_999549.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_999551.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: rfr:Rfer_3188 lipid A biosynthesis acyltransferase
YP_999552.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: rfr:Rfer_3881 putative acyltransferase
YP_999553.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_999554.1	TIGRFAM: cytidyltransferase-related domain; PFAM: NUDIX hydrolase; cytidylyltransferase; KEGG: syc:syc1306_c nicotinamide-nucleotide adenylyltransferase / ADP compounds hydrolase
YP_999556.1	TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: rfr:Rfer_0669 asparagine synthase, glutamine-hydrolyzing
YP_999557.1	KEGG: syg:sync_0184 hypothetical protein
YP_999558.1	PFAM: Methyltransferase type 12
YP_999559.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nwi:Nwi_2393 short-chain dehydrogenase/reductase SDR
YP_999560.1	PFAM: acylneuraminate cytidylyltransferase; KEGG: vfi:VF0147 acylneuraminate cytidylyltransferase
YP_999561.1	PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: mta:Moth_0756 N-acylneuraminate-9-phosphate synthase
YP_999562.1	KEGG: vvu:VV10809 hypothetical protein
YP_999563.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: hch:HCH_04836 UDP-N-acetylglucosamine 2-epimerase
YP_999564.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mbu:Mbur_1864 hypothetical protein
YP_999565.1	PFAM: CBS domain containing protein; Nucleotidyl transferase; KEGG: sru:SRU_0607 putative mannose-1-phosphate guanyltransferase
YP_999566.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bja:blr5990 putative aminotransferase
YP_999567.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mag:amb0077 nucleoside-diphosphate-sugar epimerase
YP_999568.1	PFAM: histidine biosynthesis; KEGG: lpf:lpl0786 cyclase HisF
YP_999569.1	TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: lpf:lpl0787 amidotransferase HisH
YP_999570.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: tbd:Tbd_1871 putative epimerase/dehydratase polysaccharide-related biosynthesis protein
YP_999571.1	KEGG: eba:ebA4606 hypothetical protein
YP_999572.1	PFAM: peptidase S16, lon domain protein; KEGG: pol:Bpro_3619 peptidase S16, lon-like
YP_999573.1	PFAM: protein of unknown function YGGT; KEGG: rfr:Rfer_1785 protein of unknown function YGGT
YP_999574.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: pol:Bpro_3618 acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_999575.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_999576.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_999577.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: pol:Bpro_3615 phosphoribosylanthranilate isomerase
YP_999578.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_999579.1	KEGG: pol:Bpro_3613 putative transmembrane protein
YP_999580.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_999581.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; KEGG: csa:Csal_1723 diguanylate cyclase with PAS/PAC sensor
YP_999582.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: rfr:Rfer_3168 transcriptional regulator, Crp/Fnr family
YP_999583.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pol:Bpro_4032 molybdopterin oxidoreductase
YP_999584.1	PFAM: Extracellular ligand-binding receptor; KEGG: reh:H16_A3293 ABC-type transporter, periplasmic component
YP_999585.1	KEGG: ana:all8064 similar to H repeat-associated protein
YP_999586.1	PFAM: transposase, IS4 family protein; KEGG: ppr:PBPRA1587 putative transposase
YP_999588.1	PFAM: transposase, IS4 family protein; KEGG: eba:ebA5346 transposase (IS4), fragment
YP_999589.1	KEGG: pol:Bpro_2111 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_999590.1	KEGG: rfr:Rfer_1329 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase, type 3
YP_999591.1	KEGG: rfr:Rfer_0643 hypothetical protein
YP_999592.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_3196 putative transposase
YP_999593.1	KEGG: bbr:BB4931 putative cAMP phosphodiesterase
YP_999594.1	PFAM: protein of unknown function DUF192; KEGG: pol:Bpro_2944 protein of unknown function DUF192
YP_999595.1	PFAM: manganese and iron superoxide dismutase; KEGG: pol:Bpro_2945 superoxide dismutase
YP_999596.1	KEGG: rfr:Rfer_3152 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type
YP_999597.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: rfr:Rfer_3153 MotA/TolQ/ExbB proton channel
YP_999598.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2948 biopolymer transport protein ExbD/TolR
YP_999599.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_999600.1	KEGG: pol:Bpro_2951 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase
YP_999601.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_999602.1	PFAM: Asparaginase/glutaminase; KEGG: pol:Bpro_2953 asparaginase
YP_999604.1	KEGG: xfa:XF2029 hypothetical protein
YP_999605.1	PFAM: protein of unknown function DUF433; KEGG: xfa:XF2030 hypothetical protein
YP_999606.1	KEGG: pae:PA1370 hypothetical protein
YP_999607.1	PFAM: ANTAR domain protein; KEGG: psb:Psyr_2207 ANTAR
YP_999608.1	KEGG: bur:Bcep18194_B1846 ABC branched chain amino acid family transporter, periplasmic ligand binding protein
YP_999609.1	PFAM: von Willebrand factor, type A; KEGG: rme:Rmet_1498 von Willebrand factor, type A
YP_999610.1	PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: nwi:Nwi_1976 ATPase associated with various cellular activities, AAA_5
YP_999611.1	aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates
YP_999612.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pst:PSPTO_2414 branched-chain amino acid ABC transporter, ATP-binding protein, putative
YP_999613.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0567 ABC transporter related
YP_999614.1	PFAM: inner-membrane translocator; KEGG: reh:H16_B0075 ABC-type transporter, permease component: HAAT family
YP_999615.1	PFAM: inner-membrane translocator; KEGG: psb:Psyr_2204 inner-membrane translocator
YP_999616.1	KEGG: psb:Psyr_2205 extracellular ligand-binding receptor
YP_999617.1	PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pau:PA14_53260 hypothetical protein
YP_999618.1	Represses a number of genes involved in the response to DNA damage
YP_999619.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_2956 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_999620.1	PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2411 extracellular ligand-binding receptor
YP_999621.1	Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen, nitrate, sulphate or fumarate
YP_999622.1	KEGG: nha:Nham_0800 transcriptional regulator, XRE family
YP_999624.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: atc:AGR_L_351 hypothetical protein
YP_999625.1	PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2411 extracellular ligand-binding receptor
YP_999626.1	KEGG: pol:Bpro_2410 hypothetical protein
YP_999627.1	PFAM: DNA polymerase III chi subunit, HolC; KEGG: pol:Bpro_2409 DNA polymerase III chi subunit, HolC
YP_999628.1	PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: pol:Bpro_2408 leucyl aminopeptidase
YP_999629.1	PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2115 permease YjgP/YjgQ
YP_999630.1	PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2114 permease YjgP/YjgQ
YP_999631.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: pol:Bpro_2405 cobalamin (vitamin B12) biosynthesis CbiX protein
YP_999632.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_2112 transcriptional regulator, LysR family
YP_999633.1	catalyzes the transfer of an amino moiety
YP_999634.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_0448 glyoxalase/bleomycin resistance protein/dioxygenase
YP_999635.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: reu:Reut_A1011 probable gst-related protein
YP_999636.1	KEGG: rfr:Rfer_0616 hypothetical protein
YP_999637.1	PFAM: protein of unknown function DUF461; KEGG: pol:Bpro_1764 protein of unknown function DUF461
YP_999638.1	KEGG: rfr:Rfer_0621 hypothetical protein
YP_999639.1	KEGG: rfr:Rfer_0622 hypothetical protein
YP_999640.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: reu:Reut_B4026 CBS:protein of unknown function DUF21:transporter-associated region
YP_999641.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_999642.1	PFAM: HhH-GPD family protein; KEGG: rfr:Rfer_1350 HhH-GPD
YP_999643.1	KEGG: pol:Bpro_2863 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit
YP_999644.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: rfr:Rfer_1352 tRNA(Ile)-lysidine synthetase-like
YP_999645.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_999646.1	PFAM: transposase, IS4 family protein; KEGG: eba:ebA6355 transposase, IS4 family
YP_999647.1	PFAM: HipA domain protein; KEGG: bbr:BB0527 hypothetical protein
YP_999648.1	SMART: helix-turn-helix domain protein; KEGG: bbr:BB0528 putative DNA-binding protein
YP_999649.1	KEGG: pol:Bpro_1723 UvrD/REP helicase
YP_999650.1	KEGG: pfo:Pfl_0350 hypothetical protein
YP_999651.1	KEGG: pfl:PFL_0392 hypothetical protein
YP_999652.1	KEGG: pol:Bpro_3196 putative transposase
YP_999653.1	KEGG: ctc:CTC01779 glutathione-regulated potassium-efflux system protein
YP_999654.1	PFAM: aldehyde dehydrogenase; KEGG: sus:Acid_0037 lactaldehyde dehydrogenase
YP_999655.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:bll6221 Rieske iron-sulfur protein
YP_999656.1	PFAM: Pyrrolo-quinoline quinone; KEGG: bja:bll6220 putative alcohol dehydrogenase precursor
YP_999657.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: reu:Reut_B5548 helix-turn-helix, fis-type
YP_999658.1	PFAM: alpha/beta hydrolase fold; KEGG: rpa:RPA0996 alpha/beta hydrolase fold
YP_999659.1	KEGG: rpa:RPA0996 alpha/beta hydrolase fold
YP_999660.1	PFAM: regulatory protein, TetR; KEGG: reh:H16_B0715 transcriptional regulator, TetR/AcrR-family
YP_999661.1	PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0528 porin, gram-negative type
YP_999662.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rso:RSc2044 putative acyl-CoA dehydrogenase oxidoreductase protein
YP_999663.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rso:RSc2045 putative acyl-CoA dehydrogenase oxidoreductase protein
YP_999664.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: reh:H16_B0724 enoyl-CoA hydratase/isomerase family
YP_999665.1	KEGG: sma:SAV1384 putative acyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_999666.1	PFAM: AMP-dependent synthetase and ligase; KEGG: afu:AF2033 medium-chain acyl-CoA ligase
YP_999667.1	KEGG: rme:Rmet_4580 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_999668.1	KEGG: reh:H16_B0717 ABC-type transporter, ATPase component: PepT family; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_999669.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rme:Rmet_4578 extracellular solute-binding protein, family 5
YP_999670.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B0719 ABC-type transporter, permease component: PepT family
YP_999671.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B0720 ABC-type transporter, permease component: PepT family
YP_999672.1	PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_B0723 transporter of the major facilitator superfamily(MFS)
YP_999673.1	KEGG: bbr:BB4783 hypothetical protein
YP_999674.1	PFAM: protein of unknown function DUF521; KEGG: bbr:BB4784 hypothetical protein
YP_999675.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5589 hypothetical protein
YP_999676.1	KEGG: bxe:Bxe_B2437 hypothetical protein
YP_999677.1	PFAM: Pyrrolo-quinoline quinone; KEGG: bxe:Bxe_B2427 methanol dehydrogenase-like protein (XoxF)
YP_999678.1	KEGG: bxe:Bxe_B2426 putative methanol dehydrogenase-like protein, cytochrome cL (XoxG)
YP_999679.1	SMART: extracellular solute-binding protein, family 3; KEGG: bxe:Bxe_B2425 ABC transporter, periplasmic ligand binding protein
YP_999680.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_B1041 ABC-type transporter, ATPase component
YP_999681.1	TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: reh:H16_B1042 conserved hypothetical protein
YP_999682.1	KEGG: reh:H16_B1043 conserved hypothetical protein
YP_999683.1	PFAM: ABC-2 type transporter; KEGG: reh:H16_B1044 ABC-type multidrug transport system
YP_999684.1	KEGG: oih:OB2203 hypothetical protein
YP_999685.1	PFAM: flavodoxin/nitric oxide synthase; KEGG: rfr:Rfer_2573 putative flavodoxin
YP_999686.1	PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2903 FAD dependent oxidoreductase
YP_999687.1	PFAM: cytochrome c, class I; KEGG: pol:Bpro_0336 cytochrome c, class I
YP_999688.1	KEGG: rfr:Rfer_0100 hypothetical protein
YP_999689.1	KEGG: pol:Bpro_0333 hypothetical protein
YP_999690.1	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: bbr:BB0421 hypothetical protein
YP_999691.1	TIGRFAM: outer membrane protein; KEGG: pen:PSEEN0746 hypothetical protein
YP_999692.1	PFAM: CreA family protein; KEGG: eba:ebA3483 CreA protein
YP_999693.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_999694.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_999695.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1417 ABC transporter related
YP_999696.1	KEGG: reu:Reut_A2583 hypothetical protein
YP_999697.1	KEGG: hin:HI0451 hypothetical protein
YP_999698.1	PFAM: virulence-associated protein D (VapD) conserved region; KEGG: cch:Cag_1570 virulence-associated protein D
YP_999699.1	KEGG: rfr:Rfer_0823 hypothetical protein
YP_999700.1	KEGG: dre:569722 similar to Spectrin beta chain, brain 2 (Spectrin, non-erythroid beta chain 2) (Beta-III spectrin) (SPNB-3) (Beta SpIII sigma 1) (Spectrin-like protein GTRAP41)
YP_999701.1	TIGRFAM: outer membrane protein; KEGG: neu:NE0161 hemolysin-type calcium-binding region:RTX N-terminal domain
YP_999702.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: stm:STM3516 putative cytoplasmic protein
YP_999703.1	TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: ssn:SSO_0268 damage-inducible protein J
YP_999704.1	KEGG: rru:Rru_A1000 hypothetical protein
YP_999705.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pol:Bpro_1480 xanthine dehydrogenase
YP_999706.1	PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_1481 molybdopterin dehydrogenase, FAD-binding
YP_999707.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1483 ABC transporter related
YP_999708.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_1484 inner-membrane translocator
YP_999709.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_1485 inner-membrane translocator
YP_999710.1	PFAM: basic membrane lipoprotein; KEGG: rfr:Rfer_3163 basic membrane lipoprotein
YP_999711.1	TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; KEGG: bte:BTH_II1936 ribonucleotide reductase system
YP_999712.1	PFAM: flavin reductase domain protein, FMN-binding; KEGG: rfr:Rfer_4057 flavin reductase-like, FMN-binding
YP_999713.1	PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0148 D-amino-acid dehydrogenase
YP_999714.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_999715.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_999716.1	PFAM: 60 kDa inner membrane insertion protein; KEGG: pol:Bpro_4905 60 kDa inner membrane insertion protein
YP_999717.1	PFAM: protein of unknown function DUF37; KEGG: pol:Bpro_4906 protein of unknown function DUF37
YP_999718.1	KEGG: pol:Bpro_4907 hypothetical protein
YP_999719.1	in Escherichia coli transcription of this gene is enhanced by polyamines