-- dump date   	20140620_140816
-- class       	Genbank::misc_feature
-- table       	misc_feature_note
-- id	note
360102000001	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102000002	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102000003	DNA-binding interface [nucleotide binding]; DNA binding site
360102000004	Integrase core domain; Region: rve; pfam00665
360102000005	transposase/IS protein; Provisional; Region: PRK09183
360102000006	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102000007	Walker A motif; other site
360102000008	ATP binding site [chemical binding]; other site
360102000009	Walker B motif; other site
360102000010	Caudovirales tail fibre assembly protein; Region: Caudo_TAP; pfam02413
360102000011	Phage tail fibre repeat; Region: Phage_fiber_2; pfam03406
360102000012	Carbohydrate Binding Module 6 (CBM6) and CBM35_like superfamily; Region: CBM6-CBM35-CBM36_like; cl14880
360102000013	Phage Tail Collar Domain; Region: Collar; pfam07484
360102000014	Domain of unknown function (DUF4376); Region: DUF4376; pfam14301
360102000015	Phage-related protein, tail component [Function unknown]; Region: COG4733
360102000016	Putative phage tail protein; Region: Phage-tail_3; pfam13550
360102000017	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063
360102000018	Interdomain contacts; other site
360102000019	Domain of unknown function (DUF1983); Region: DUF1983; pfam09327
360102000020	Fibronectin type III protein; Region: DUF3672; pfam12421
360102000021	Phage-related protein, tail component [Function unknown]; Region: COG4723
360102000022	Mpr1p, Pad1p N-terminal (MPN) domains; Region: MPN; cl13996
360102000023	Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; Region: Spr; COG0791
360102000024	NlpC/P60 family; Region: NLPC_P60; pfam00877
360102000025	lambda-like phage minor tail protein L; Region: phage_tail_L; TIGR01600
360102000026	Phage-related protein [Function unknown]; Region: COG4718
360102000027	Lambda phage tail tape-measure protein (Tape_meas_lam_C); Region: Tape_meas_lam_C; pfam09718
360102000028	Mu-like prophage protein [General function prediction only]; Region: COG3941
360102000029	tape measure domain; Region: tape_meas_nterm; TIGR02675
360102000030	Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]; Region: COG5492
360102000031	Bacterial Ig-like domain (group 2); Region: Big_2; pfam02368
360102000032	Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]; Region: COG5492
360102000033	Bacterial Ig-like domain (group 2); Region: Big_2; pfam02368
360102000034	Phage portal protein, SPP1 Gp6-like; Region: Phage_prot_Gp6; pfam05133
360102000035	large terminase protein; Provisional; Region: 17; PHA02533
360102000036	Terminase-like family; Region: Terminase_6; pfam03237
360102000037	ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]; Region: COG2401
360102000038	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102000039	cytochrome c biogenesis protein CcmA; Provisional; Region: PRK13540
360102000040	Walker A/P-loop; other site
360102000041	ATP binding site [chemical binding]; other site
360102000042	Q-loop/lid; other site
360102000043	ABC transporter signature motif; other site
360102000044	Walker B; other site
360102000045	D-loop; other site
360102000046	H-loop/switch region; other site
360102000047	Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]; Region: Spo0J; COG1475
360102000048	ParB-like nuclease domain; Region: ParBc; pfam02195
360102000049	Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]; Region: Spo0J; COG1475
360102000050	ParB-like nuclease domain; Region: ParBc; pfam02195
360102000051	DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]; Region: SSL2; COG1061
360102000052	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
360102000053	ATP binding site [chemical binding]; other site
360102000054	putative Mg++ binding site [ion binding]; other site
360102000055	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102000056	nucleotide binding region [chemical binding]; other site
360102000057	ATP-binding site [chemical binding]; other site
360102000058	The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin.  Many of these band 7 domain-containing proteins are lipid raft-associated.  Individual proteins of this...; Region: Band_7; cl02525
360102000059	Protein of unknown function (DUF2846); Region: DUF2846; pfam11008
360102000060	Repressor of phase-1 flagellin; Region: Flag1_repress; pfam03614
360102000061	Protein of unknown function (DUF327); Region: DUF327; cl00753
360102000062	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102000063	Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination.  HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes...; Region: RuvC_resolvase; cl00243
360102000064	active site
360102000065	putative DNA-binding cleft [nucleotide binding]; other site
360102000066	dimer interface [polypeptide binding]; other site
360102000067	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102000068	endonuclease subunit; Provisional; Region: 46; PHA02562
360102000069	Walker A/P-loop; other site
360102000070	ATP binding site [chemical binding]; other site
360102000071	Q-loop/lid; other site
360102000072	ABC transporter signature motif; other site
360102000073	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102000074	ABC transporter signature motif; other site
360102000075	Walker B; other site
360102000076	D-loop; other site
360102000077	H-loop/switch region; other site
360102000078	DNA repair exonuclease [DNA replication, recombination, and repair]; Region: SbcD; COG0420
360102000079	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
360102000080	active site
360102000081	metal binding site [ion binding]; metal-binding site
360102000082	TRAP transporter solute receptor, TAXI family; Region: TRAP_TAXI; TIGR02122
360102000083	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715
360102000084	Initiator Replication protein; Region: Rep_3; cl03080
360102000085	hypothetical protein; Region: PHA02053
360102000086	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102000087	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102000088	DNA-binding interface [nucleotide binding]; DNA binding site
360102000089	Integrase core domain; Region: rve; pfam00665
360102000090	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102000091	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
360102000092	Walker A motif; other site
360102000093	ATP binding site [chemical binding]; other site
360102000094	Walker B motif; other site
360102000095	3-oxoacyl-(acyl carrier protein) synthase II; Provisional; Region: PRK14691
360102000096	Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330
360102000097	SPFH domain / Band 7 family; Region: Band_7; pfam01145
360102000098	ATP synthase B/B' CF(0); Region: ATP-synt_B; cl17192
360102000099	RecA/RadA recombinase [DNA replication, recombination, and repair]; Region: RecA; COG0468
360102000100	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
360102000101	Walker A motif; other site
360102000102	ATP binding site [chemical binding]; other site
360102000103	Walker B motif; other site
360102000104	PIN domain of bacteriophage T3, T4 RNase H, T5-5'nuclease, and homologs; Region: PIN_T4-like; cd09860
360102000105	5'-3' exonuclease; Region: 53EXOc; smart00475
360102000106	active site
360102000107	metal binding site 1 [ion binding]; metal-binding site
360102000108	5' ssDNA interaction site; other site
360102000109	3' ssDNA interaction site; other site
360102000110	metal binding site 2 [ion binding]; metal-binding site
360102000111	H3TH domain of bacteriophage T3, T4 RNase H, T5-5' nucleases, and homologs; Region: H3TH_T4-like; cd09899
360102000112	DNA binding site [nucleotide binding]
360102000113	metal binding site [ion binding]; metal-binding site
360102000114	Prophage CP4-57 regulatory protein (AlpA); Region: Phage_AlpA; cl17523
360102000115	PHP domain; Region: PHP; pfam02811
360102000116	Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III; Region: PHP_PolIIIA; cd07431
360102000117	active site
360102000118	PHP Thumb interface [polypeptide binding]; other site
360102000119	Bacterial DNA polymerase III alpha subunit; Region: DNA_pol3_alpha; pfam07733
360102000120	Uracil DNA glycosylase superfamily; Region: UDG; pfam03167
360102000121	MoxR-like ATPases [General function prediction only]; Region: COG0714
360102000122	AAA domain (dynein-related subfamily); Region: AAA_5; pfam07728
360102000123	Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]; Region: CobT; COG4547
360102000124	Cobalamin biosynthesis protein CobT; Region: CobT; pfam06213
360102000125	Cobalamin biosynthesis protein CobT VWA domain; Region: CobT_C; pfam11775
360102000126	metal ion-dependent adhesion site (MIDAS); other site
360102000127	transposase/IS protein; Provisional; Region: PRK09183
360102000128	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102000129	Walker A motif; other site
360102000130	ATP binding site [chemical binding]; other site
360102000131	Walker B motif; other site
360102000132	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102000133	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102000134	DNA-binding interface [nucleotide binding]; DNA binding site
360102000135	Integrase core domain; Region: rve; pfam00665
360102000136	Cobalamin biosynthesis protein CobT; Region: CobT; pfam06213
360102000137	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
360102000138	DNA binding site [nucleotide binding]
360102000139	active site
360102000140	Int/Topo IB signature motif; other site
360102000141	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
360102000142	Caf1 Capsule antigen; Region: Antig_Caf1; pfam09255
360102000143	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
360102000144	PapC N-terminal domain; Region: PapC_N; pfam13954
360102000145	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102000146	PapC C-terminal domain; Region: PapC_C; pfam13953
360102000147	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
360102000148	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102000149	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
360102000150	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
360102000151	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102000152	GyrI-like small molecule binding domain; Region: GyrI-like; pfam06445
360102000153	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102000154	MULE transposase domain; Region: MULE; pfam10551
360102000155	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
360102000156	Transposase; Region: DEDD_Tnp_IS110; pfam01548
360102000157	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
360102000158	Uncharacterized conserved protein [Function unknown]; Region: COG5464
360102000159	putative transposase OrfB; Reviewed; Region: PHA02517
360102000160	Retron-type reverse transcriptase [DNA replication, recombination, and repair]; Region: COG3344
360102000161	RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable...; Region: RT_G2_intron; cd01651
360102000162	Putative catalytic domain, repeat 1, of Yersinia pestis murine toxin-like proteins; Region: PLDc_Ymt_1; cd09150
360102000163	putative active site [active]
360102000164	catalytic site [active]
360102000165	Putative catalytic domain, repeat 2, of Yersinia pestis murine toxin-like proteins; Region: PLDc_Ymt_2; cd09151
360102000166	PLD-like domain; Region: PLDc_2; pfam13091
360102000167	putative active site [active]
360102000168	catalytic site [active]
360102000169	Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins; Region: PLDc_Nuc; cd09170
360102000170	PLD-like domain; Region: PLDc_2; pfam13091
360102000171	putative active site [active]
360102000172	catalytic site [active]
360102000173	Uncharacterized conserved protein [Function unknown]; Region: COG5464
360102000174	Putative transposase, YhgA-like; Region: Transposase_31; pfam04754
360102000175	Essential protein Yae1, N terminal; Region: Yae1_N; pfam09811
360102000176	Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961
360102000177	Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient...; Region: SR_Res_par; cd03767
360102000178	catalytic residues [active]
360102000179	catalytic nucleophile [active]
360102000180	Antitoxin Phd_YefM, type II toxin-antitoxin system; Region: PhdYeFM_antitox; pfam02604
360102000181	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
360102000182	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
360102000183	P-loop; other site
360102000184	Magnesium ion binding site [ion binding]; other site
360102000185	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
360102000186	ParB/RepB/Spo0J family partition protein; Region: parB_part; TIGR00180
360102000187	ParB-like nuclease domain; Region: ParB; smart00470
360102000188	ParB family; Region: ParB; pfam08775
360102000189	Domain of unknown function (DUF4113); Region: DUF4113; pfam13438
360102000190	Predicted ATPase (AAA+ superfamily) [General function prediction only]; Region: COG1672
360102000191	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102000192	Walker A motif; other site
360102000193	ATP binding site [chemical binding]; other site
360102000194	Walker B motif; other site
360102000195	CRISPR/Cas system-associated protein Cas1; Region: Cas1_I-II-III; cl00656
360102000196	putative methylase; Provisional; Region: PRK13699
360102000197	DNA modification methylase [DNA replication, recombination, and repair]; Region: COG0863
360102000198	Protein of unknown function (DUF1380); Region: DUF1380; pfam07128
360102000199	Antirestriction protein [General function prediction only]; Region: ArdA; COG4734
360102000200	Bacterial protein of unknown function (DUF905); Region: DUF905; pfam06006
360102000201	Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]; Region: Spo0J; COG1475
360102000202	ParB-like nuclease domain; Region: ParBc; pfam02195
360102000203	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102000204	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102000205	DNA-binding interface [nucleotide binding]; DNA binding site
360102000206	Integrase core domain; Region: rve; pfam00665
360102000207	transposase/IS protein; Provisional; Region: PRK09183
360102000208	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102000209	Walker A motif; other site
360102000210	ATP binding site [chemical binding]; other site
360102000211	Walker B motif; other site
360102000212	Rop protein; Region: Rop; pfam01815
360102000213	Rop protein; Region: Rop; pfam01815
360102000214	Pesticin Translocation And Receptor Binding Domain; Region: Pesticin_RB; cd12220
360102000215	TonB box [polypeptide binding]; other site
360102000216	outer membrane protease; Reviewed; Region: PRK12580
360102000217	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
360102000218	non-specific DNA binding site [nucleotide binding]; other site
360102000219	salt bridge; other site
360102000220	sequence-specific DNA binding site [nucleotide binding]; other site
360102000221	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4683
360102000222	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102000223	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102000224	DNA-binding interface [nucleotide binding]; DNA binding site
360102000225	Integrase core domain; Region: rve; pfam00665
360102000226	transposase/IS protein; Provisional; Region: PRK09183
360102000227	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102000228	Walker A motif; other site
360102000229	ATP binding site [chemical binding]; other site
360102000230	Walker B motif; other site
360102000231	Transposase; Region: HTH_Tnp_1; pfam01527
360102000232	YopH, N-terminal; Region: YopH_N; pfam09013
360102000233	type III secretion system protein; Reviewed; Region: PRK06937
360102000234	Flagellar assembly protein FliH; Region: FliH; pfam02108
360102000235	YOP proteins translocation protein K (YscK); Region: YscK; pfam06578
360102000236	Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]; Region: EscJ; COG4669
360102000237	type III secretion apparatus protein, YscI/HrpB, C-terminal domain; Region: yscI_hrpB_dom; TIGR02497
360102000238	type III secretion effector, YopR family; Region: type_III_yopR; TIGR02509
360102000239	type III secretion protein, YscG family; Region: type_III_yscG; TIGR02508
360102000240	type III secretion apparatus needle protein; Region: III_needle; TIGR02105
360102000241	Protein of unknown function (DUF1895); Region: DUF1895; pfam08988
360102000242	type III secretion apparatus protein, YscD/HrpQ family; Region: type_III_yscD; TIGR02500
360102000243	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cl00062
360102000244	phosphopeptide binding site; other site
360102000245	type III secretion system protein SsaD; Provisional; Region: PRK15367
360102000246	type III secretion outer membrane pore, YscC/HrcC family; Region: type_III_yscC; TIGR02516
360102000247	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
360102000248	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
360102000249	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
360102000250	type III secretion system chaperone, YscB family; Region: type_III_yscB; TIGR02513
360102000251	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
360102000252	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
360102000253	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102000254	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102000255	Type III secretory pathway, component EscU [Intracellular trafficking and secretion]; Region: EscU; COG4792
360102000256	Type III secretory pathway, component EscT [Intracellular trafficking and secretion]; Region: EscT; COG4791
360102000257	Type III secretory pathway, component EscS [Intracellular trafficking and secretion]; Region: EscS; COG4794
360102000258	Type III secretory pathway, component EscR [Intracellular trafficking and secretion]; Region: EscR; COG4790
360102000259	type III secretion system protein; Validated; Region: PRK06933
360102000260	Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliN; COG1886
360102000261	type III secretion system needle length determinant; Region: type_III_yscP; TIGR02514
360102000262	Type III secretion protein YscO; Region: YscO; pfam07321
360102000263	type III secretion system ATPase; Provisional; Region: PRK06936
360102000264	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
360102000265	Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they...; Region: ATPase_flagellum-secretory_path_III; cd01136
360102000266	Walker A motif/ATP binding site; other site
360102000267	Walker B motif; other site
360102000268	HrpJ-like domain; Region: HrpJ; cl15454
360102000269	TyeA; Region: TyeA; pfam09059
360102000270	type III secretion chaperone SycN; Region: type_III_SycN; TIGR02503
360102000271	type III secretion protein, YscX family; Region: type_III_YscX; TIGR02502
360102000272	putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917
360102000273	Type III secretory pathway, component EscV [Intracellular trafficking and secretion]; Region: EscV; COG4789
360102000274	FHIPEP family; Region: FHIPEP; pfam00771
360102000275	Type III secretion system regulator (LcrR); Region: LcrR; cl09838
360102000276	type III secretion protein LcrG; Region: LcrG_PcrG; TIGR02573
360102000277	V antigen (LcrV) protein; Region: LcrV; pfam04792
360102000278	type III secretion low calcium response chaperone LcrH/SycD; Region: LcrH_SycD; TIGR02552
360102000279	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
360102000280	binding surface
360102000281	TPR motif; other site
360102000282	Uncharacterized conserved protein [Function unknown]; Region: COG5613
360102000283	YopD protein; Region: YopD; pfam05844
360102000284	Integrase core domain; Region: rve; pfam00665
360102000285	E3 ubiquitin-protein ligase SspH2; Provisional; Region: PRK15387
360102000286	E3 ubiquitin-protein ligase SspH2; Provisional; Region: PRK15387
360102000287	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102000288	DDE domain; Region: DDE_Tnp_IS240; pfam13610
360102000289	Tir chaperone protein (CesT) family; Region: CesT; pfam05932
360102000290	Yersinia/Haemophilus virulence surface antigen; Region: Peptidase_C58; pfam03543
360102000291	glycine dehydrogenase; Provisional; Region: PRK12566
360102000292	Enterobacterial TraT complement resistance protein; Region: TraT; pfam05818
360102000293	Transposase; Region: HTH_Tnp_1; pfam01527
360102000294	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
360102000295	HTH-like domain; Region: HTH_21; pfam13276
360102000296	Integrase core domain; Region: rve; pfam00665
360102000297	Integrase core domain; Region: rve_3; cl15866
360102000298	plasmid-partitioning protein SopA; Provisional; Region: PRK13705
360102000299	MerR family regulatory protein; Region: MerR; pfam00376
360102000300	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
360102000301	P-loop; other site
360102000302	Magnesium ion binding site [ion binding]; other site
360102000303	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
360102000304	Magnesium ion binding site [ion binding]; other site
360102000305	plasmid-partitioning protein; Provisional; Region: PRK13698
360102000306	ParB-like nuclease domain; Region: ParB; smart00470
360102000307	Domain of unknown function (DUF4113); Region: DUF4113; pfam13438
360102000308	putative addiction module antidote protein, CC2985 family; Region: antidote_CC2985; TIGR02606
360102000309	Plasmid stabilization system protein [General function prediction only]; Region: ParE; COG3668
360102000310	YopE, N terminal; Region: YopE_N; pfam09020
360102000311	GTPase-activating protein (GAP) domain found in bacterial cytotoxins, ExoS, SptP, and YopE. Part of protein secretion system; stimulates Rac1- dependent cytoskeletal changes that promote bacterial internalization; Region: ToxGAP; cd00219
360102000312	switch II binding region; other site
360102000313	Rac1 P-loop interaction site [polypeptide binding]; other site
360102000314	GTP binding residues [chemical binding]; other site
360102000315	switch I binding region; other site
360102000316	Tir chaperone protein (CesT) family; Region: CesT; pfam05932
360102000317	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
360102000318	Integrase core domain; Region: rve; pfam00665
360102000319	Integrase core domain; Region: rve_3; pfam13683
360102000320	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102000321	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl17393
360102000322	Integrase core domain; Region: rve; pfam00665
360102000323	Integrase core domain; Region: rve_3; cl15866
360102000324	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl17189
360102000325	Tir chaperone protein (CesT) family; Region: CesT; pfam05932
360102000326	insertion element IS2 transposase InsD; Provisional; Region: PRK14702
360102000327	HTH-like domain; Region: HTH_21; pfam13276
360102000328	Integrase core domain; Region: rve; pfam00665
360102000329	Integrase core domain; Region: rve_3; pfam13683
360102000330	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102000331	DNA-binding interface [nucleotide binding]; DNA binding site
360102000332	Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961
360102000333	Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768
360102000334	catalytic residues [active]
360102000335	catalytic nucleophile [active]
360102000336	Presynaptic Site I dimer interface [polypeptide binding]; other site
360102000337	Synaptic Antiparallel dimer interface [polypeptide binding]; other site
360102000338	Synaptic Flat tetramer interface [polypeptide binding]; other site
360102000339	Synaptic Site I dimer interface [polypeptide binding]; other site
360102000340	DNA binding site [nucleotide binding]
360102000341	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102000342	DNA-binding interface [nucleotide binding]; DNA binding site
360102000343	Domain of unknown function (DUF4158); Region: DUF4158; pfam13700
360102000344	Tn3 transposase DDE domain; Region: DDE_Tnp_Tn3; pfam01526
360102000345	HTH-like domain; Region: HTH_21; pfam13276
360102000346	YadA-like, left-handed beta-roll; Region: LbR_YadA-like; cd12820
360102000347	trimer interface [polypeptide binding]; other site
360102000348	Haemagglutinin; Region: HIM; pfam05662
360102000349	YadA-like C-terminal region; Region: YadA; pfam03895
360102000350	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116
360102000351	conjugal transfer nickase/helicase TraI; Provisional; Region: PRK13709
360102000352	Transposase; Region: HTH_Tnp_1; pfam01527
360102000353	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
360102000354	HTH-like domain; Region: HTH_21; pfam13276
360102000355	Integrase core domain; Region: rve; pfam00665
360102000356	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
360102000357	PLD-like domain; Region: PLDc_2; pfam13091
360102000358	putative active site [active]
360102000359	catalytic site [active]
360102000360	replication protein; Provisional; Region: PRK13702
360102000361	replication protein; Provisional; Region: PRK13750
360102000362	Integrase core domain; Region: rve; pfam00665
360102000363	Tir chaperone protein (CesT); Region: CesT; cl08444
360102000364	Protein kinase domain; Region: Pkinase; pfam00069
360102000365	Catalytic domain of Protein Kinases; Region: PKc; cd00180
360102000366	active site
360102000367	ATP binding site [chemical binding]; other site
360102000368	substrate binding site [chemical binding]; other site
360102000369	activation loop (A-loop); other site
360102000370	Rac1-binding domain; Region: Rac1; pfam09632
360102000371	effector protein YopJ; Provisional; Region: PRK15371
360102000372	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
360102000373	Integrase core domain; Region: rve; pfam00665
360102000374	Integrase core domain; Region: rve_3; pfam13683
360102000375	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
360102000376	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
360102000377	YopH, N-terminal; Region: YopH_N; pfam09013
360102000378	Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr; Region: PTPc; cd00047
360102000379	Protein-tyrosine phosphatase; Region: Y_phosphatase; pfam00102
360102000380	active site
360102000381	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102000382	Integrase core domain; Region: rve; pfam00665
360102000383	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
360102000384	Integrase core domain; Region: rve_3; pfam13683
360102000385	FMN-binding protein MioC; Provisional; Region: PRK09004
360102000386	DNA-binding transcriptional regulator AsnC; Provisional; Region: PRK11179
360102000387	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
360102000388	putative DNA binding site [nucleotide binding]; other site
360102000389	putative Zn2+ binding site [ion binding]; other site
360102000390	AsnC family; Region: AsnC_trans_reg; pfam01037
360102000391	Asparagine synthetase A [Amino acid transport and metabolism]; Region: AsnA; COG2502
360102000392	motif 1; other site
360102000393	dimer interface [polypeptide binding]; other site
360102000394	active site
360102000395	motif 2; other site
360102000396	motif 3; other site
360102000397	hypothetical protein; Provisional; Region: yieM; PRK10997
360102000398	VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b...; Region: VWA_YIEM_type; cd01462
360102000399	metal ion-dependent adhesion site (MIDAS); other site
360102000400	regulatory ATPase RavA; Provisional; Region: PRK13531
360102000401	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102000402	Walker A motif; other site
360102000403	ATP binding site [chemical binding]; other site
360102000404	Walker B motif; other site
360102000405	arginine finger; other site
360102000406	Protein of unknown function (DUF3763); Region: DUF3763; pfam12592
360102000407	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102000408	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102000409	DNA-binding interface [nucleotide binding]; DNA binding site
360102000410	Integrase core domain; Region: rve; pfam00665
360102000411	transposase/IS protein; Provisional; Region: PRK09183
360102000412	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102000413	Walker A motif; other site
360102000414	ATP binding site [chemical binding]; other site
360102000415	Walker B motif; other site
360102000416	regulatory ATPase RavA; Provisional; Region: PRK13531
360102000417	potassium transport protein Kup; Provisional; Region: trkD; PRK10745
360102000418	potassium uptake protein; Region: kup; TIGR00794
360102000419	D-ribose pyranase; Provisional; Region: PRK11797
360102000420	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
360102000421	Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides...; Region: ribokinase; cd01174
360102000422	substrate binding site [chemical binding]; other site
360102000423	dimer interface [polypeptide binding]; other site
360102000424	ATP binding site [chemical binding]; other site
360102000425	Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011
360102000426	Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011
360102000427	putative transporter; Provisional; Region: PRK10504
360102000428	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102000429	putative substrate translocation pore; other site
360102000430	Transcriptional regulators [Transcription]; Region: FadR; COG2186
360102000431	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102000432	DNA-binding site [nucleotide binding]; DNA binding site
360102000433	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
360102000434	homoserine O-succinyltransferase; Provisional; Region: PRK05368
360102000435	Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS); Region: GATase1_HTS; cd03131
360102000436	proposed active site lysine [active]
360102000437	conserved cys residue [active]
360102000438	Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to...; Region: malate_synt_A; cd00727
360102000439	malate synthase A; Region: malate_syn_A; TIGR01344
360102000440	active site
360102000441	isocitrate lyase; Provisional; Region: PRK15063
360102000442	Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377
360102000443	tetramer interface [polypeptide binding]; other site
360102000444	active site
360102000445	Mg2+/Mn2+ binding site [ion binding]; other site
360102000446	Isocitrate dehydrogenase kinase/phosphatase [Signal transduction mechanisms]; Region: COG4579
360102000447	bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated; Region: aceK; PRK02946
360102000448	IclR helix-turn-helix domain; Region: HTH_IclR; cl17605
360102000449	Bacterial transcriptional regulator; Region: IclR; pfam01614
360102000450	Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]; Region: MetH; COG0646
360102000451	B12-dependent methionine synthase; Provisional; Region: metH; PRK09490
360102000452	MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH).  Cobalamin-dependent...; Region: MeTr; cd00740
360102000453	substrate binding pocket [chemical binding]; other site
360102000454	B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy); Region: methionine_synthase_B12_BD; cd02069
360102000455	B12 binding site [chemical binding]; other site
360102000456	cobalt ligand [ion binding]; other site
360102000457	Vitamin B12 dependent methionine synthase, activation domain; Region: Met_synt_B12; pfam02965
360102000458	haemagglutination activity domain; Region: Haemagg_act; pfam05860
360102000459	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102000460	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102000461	Large exoproteins involved in heme utilization or adhesion [Intracellular trafficking and secretion]; Region: FhaB; COG3210
360102000462	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102000463	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102000464	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102000465	Hemolysin activation/secretion protein [Intracellular trafficking and secretion]; Region: FhaC; COG2831
360102000466	POTRA domain, ShlB-type; Region: POTRA_2; pfam08479
360102000467	Haemolysin secretion/activation protein ShlB/FhaC/HecB; Region: ShlB; pfam03865
360102000468	aspartate kinase III; Validated; Region: PRK09084
360102000469	Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that...; Region: AAK; cl00452
360102000470	nucleotide binding site [chemical binding]; other site
360102000471	substrate binding site [chemical binding]; other site
360102000472	ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141
360102000473	ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII; Region: ACT_AKiii-LysC-EC_2; cd04917
360102000474	dimer interface [polypeptide binding]; other site
360102000475	glucose-6-phosphate isomerase; Reviewed; Region: pgi; PRK00179
360102000476	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015
360102000477	active site
360102000478	dimer interface [polypeptide binding]; other site
360102000479	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016
360102000480	dimer interface [polypeptide binding]; other site
360102000481	active site
360102000482	phosphate-starvation-inducible protein PsiE; Provisional; Region: PRK02833
360102000483	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
360102000484	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102000485	dimer interface [polypeptide binding]; other site
360102000486	conserved gate region; other site
360102000487	putative PBP binding loops; other site
360102000488	ABC-ATPase subunit interface; other site
360102000489	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102000490	dimer interface [polypeptide binding]; other site
360102000491	conserved gate region; other site
360102000492	putative PBP binding loops; other site
360102000493	ABC-ATPase subunit interface; other site
360102000494	maltose ABC transporter periplasmic protein; Reviewed; Region: malE; PRK09474
360102000495	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
360102000496	maltose/maltodextrin transporter ATP-binding protein; Provisional; Region: PRK11000
360102000497	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
360102000498	Walker A/P-loop; other site
360102000499	ATP binding site [chemical binding]; other site
360102000500	Q-loop/lid; other site
360102000501	ABC transporter signature motif; other site
360102000502	Walker B; other site
360102000503	D-loop; other site
360102000504	H-loop/switch region; other site
360102000505	TOBE domain; Region: TOBE_2; pfam08402
360102000506	The Maltoporin-like channels (LamB porin) form a trimeric structure which facilitate the diffusion of maltodextrins and other sugars across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an 18-strand antiparallel...; Region: Maltoporin-like; cd01346
360102000507	trimer interface; other site
360102000508	sugar binding site [chemical binding]; other site
360102000509	maltose regulon periplasmic protein; Provisional; Region: PRK10564
360102000510	type VI secretion system effector, Hcp1 family; Region: VI_effect_Hcp1; TIGR03344
360102000511	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3516
360102000512	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3517
360102000513	Protein of unknown function (DUF877); Region: DUF877; pfam05943
360102000514	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3518
360102000515	Bacterial protein of unknown function (DUF879); Region: DUF879; cl15462
360102000516	putative transposase OrfB; Reviewed; Region: PHA02517
360102000517	HTH-like domain; Region: HTH_21; pfam13276
360102000518	Integrase core domain; Region: rve; pfam00665
360102000519	Integrase core domain; Region: rve_2; pfam13333
360102000520	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
360102000521	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102000522	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102000523	Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome; Region: Ribosomal_S15p_S13e; cd00353
360102000524	16S/18S rRNA binding site [nucleotide binding]; other site
360102000525	S13e-L30e interaction site [polypeptide binding]; other site
360102000526	25S rRNA binding site [nucleotide binding]; other site
360102000527	tRNA pseudouridine synthase B; Provisional; Region: truB; PRK05033
360102000528	Pseudouridine synthase, Escherichia coli TruB like; Region: PseudoU_synth_EcTruB; cd02573
360102000529	RNA binding site [nucleotide binding]; other site
360102000530	active site
360102000531	Pseudouridine synthase II TruB, C-terminal; Region: TruB-C_2; pfam09157
360102000532	ribosome-binding factor A; Validated; Region: rbfA; PRK00521
360102000533	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
360102000534	Bacterial translation initiation factor IF-2 associated region; Region: IF2_assoc; pfam08364
360102000535	translation initiation factor IF-2; Validated; Region: infB; PRK05306
360102000536	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
360102000537	Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887
360102000538	G1 box; other site
360102000539	putative GEF interaction site [polypeptide binding]; other site
360102000540	GTP/Mg2+ binding site [chemical binding]; other site
360102000541	Switch I region; other site
360102000542	G2 box; other site
360102000543	G3 box; other site
360102000544	Switch II region; other site
360102000545	G4 box; other site
360102000546	G5 box; other site
360102000547	This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell; Region: IF2_mtIF2_II; cd03702
360102000548	Translation-initiation factor 2; Region: IF-2; pfam11987
360102000549	mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor...; Region: mtIF2_IVc; cd03692
360102000550	transcription elongation factor NusA; Validated; Region: nusA; PRK09202
360102000551	NusA N-terminal domain; Region: NusA_N; pfam08529
360102000552	S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three...; Region: S1_NusA; cd04455
360102000553	RNA binding site [nucleotide binding]; other site
360102000554	homodimer interface [polypeptide binding]; other site
360102000555	NusA-like KH domain; Region: KH_5; pfam13184
360102000556	NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134
360102000557	G-X-X-G motif; other site
360102000558	transcription termination factor NusA, C-terminal duplication; Region: nusA_Cterm_rpt; TIGR01954
360102000559	transcription termination factor NusA, C-terminal duplication; Region: nusA_Cterm_rpt; TIGR01954
360102000560	ribosome maturation protein RimP; Reviewed; Region: PRK00092
360102000561	Sm and related proteins; Region: Sm_like; cl00259
360102000562	Bacillus subtilis YxlS-like, C-terminal domain; Region: YlxS_C; cd01734
360102000563	putative oligomer interface [polypeptide binding]; other site
360102000564	putative RNA binding site [nucleotide binding]; other site
360102000565	Preprotein translocase SecG subunit; Region: SecG; pfam03840
360102000566	phosphoglucosamine mutase; Provisional; Region: glmM; PRK10887
360102000567	GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of...; Region: GlmM; cd05802
360102000568	active site
360102000569	substrate binding site [chemical binding]; other site
360102000570	metal binding site [ion binding]; metal-binding site
360102000571	DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and...; Region: DHPS; cd00739
360102000572	dihydropteroate synthase; Region: DHPS; TIGR01496
360102000573	substrate binding pocket [chemical binding]; other site
360102000574	dimer interface [polypeptide binding]; other site
360102000575	inhibitor binding site; inhibition site
360102000576	ATP-dependent metalloprotease; Reviewed; Region: hflB; PRK10733
360102000577	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102000578	Walker A motif; other site
360102000579	ATP binding site [chemical binding]; other site
360102000580	Walker B motif; other site
360102000581	arginine finger; other site
360102000582	Peptidase family M41; Region: Peptidase_M41; pfam01434
360102000583	23S rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: FtsJ; COG0293
360102000584	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102000585	S-adenosylmethionine binding site [chemical binding]; other site
360102000586	RNA-binding protein YhbY; Provisional; Region: PRK10343
360102000587	transcription elongation factor GreA; Reviewed; Region: greA; PRK00226
360102000588	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
360102000589	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
360102000590	D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional; Region: PRK11113
360102000591	D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family; Region: PBP4; TIGR00666
360102000592	DNA-binding transcriptional regulator BasR; Provisional; Region: PRK10643
360102000593	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102000594	active site
360102000595	phosphorylation site [posttranslational modification]
360102000596	intermolecular recognition site; other site
360102000597	dimerization interface [polypeptide binding]; other site
360102000598	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102000599	DNA binding site [nucleotide binding]
360102000600	sensor protein BasS/PmrB; Provisional; Region: PRK10755
360102000601	HAMP domain; Region: HAMP; pfam00672
360102000602	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102000603	dimer interface [polypeptide binding]; other site
360102000604	phosphorylation site [posttranslational modification]
360102000605	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102000606	ATP binding site [chemical binding]; other site
360102000607	Mg2+ binding site [ion binding]; other site
360102000608	G-X-G motif; other site
360102000609	GTPase CgtA; Reviewed; Region: obgE; PRK12298
360102000610	GTP1/OBG; Region: GTP1_OBG; pfam01018
360102000611	Obg GTPase; Region: Obg; cd01898
360102000612	G1 box; other site
360102000613	GTP/Mg2+ binding site [chemical binding]; other site
360102000614	Switch I region; other site
360102000615	G2 box; other site
360102000616	G3 box; other site
360102000617	Switch II region; other site
360102000618	G4 box; other site
360102000619	G5 box; other site
360102000620	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
360102000621	EamA-like transporter family; Region: EamA; pfam00892
360102000622	50S ribosomal protein L27; Validated; Region: rpmA; PRK05435
360102000623	50S ribosomal protein L21/unknown domain fusion protein; Provisional; Region: PRK12278
360102000624	50S ribosomal protein L21; Validated; Region: rplU; PRK05573
360102000625	Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142
360102000626	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
360102000627	substrate binding pocket [chemical binding]; other site
360102000628	chain length determination region; other site
360102000629	substrate-Mg2+ binding site; other site
360102000630	catalytic residues [active]
360102000631	aspartate-rich region 1; other site
360102000632	active site lid residues [active]
360102000633	aspartate-rich region 2; other site
360102000634	Mu DNA-binding domain; Region: HTH_Tnp_Mu_1; pfam02316
360102000635	Winged helix-turn-helix DNA-binding; Region: HTH_35; pfam13693
360102000636	malate dehydrogenase; Provisional; Region: PRK05086
360102000637	Glyoxysomal and mitochondrial malate dehydrogenases; Region: MDH_glyoxysomal_mitochondrial; cd01337
360102000638	NAD binding site [chemical binding]; other site
360102000639	dimerization interface [polypeptide binding]; other site
360102000640	Substrate binding site [chemical binding]; other site
360102000641	arginine repressor; Provisional; Region: PRK05066
360102000642	Arginine repressor, DNA binding domain; Region: Arg_repressor; pfam01316
360102000643	Arginine repressor, C-terminal domain; Region: Arg_repressor_C; pfam02863
360102000644	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
360102000645	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Region: mpl; TIGR01081
360102000646	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
360102000647	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
360102000648	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
360102000649	Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate  into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1; Region: FBPase; cd00354
360102000650	AMP binding site [chemical binding]; other site
360102000651	metal binding site [ion binding]; metal-binding site
360102000652	active site
360102000653	Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers; Region: pyrophosphatase; cd00412
360102000654	dimer interface [polypeptide binding]; other site
360102000655	substrate binding site [chemical binding]; other site
360102000656	metal binding sites [ion binding]; metal-binding site
360102000657	GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cd06661
360102000658	putative active site pocket [active]
360102000659	dimerization interface [polypeptide binding]; other site
360102000660	putative catalytic residue [active]
360102000661	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2911
360102000662	Family of unknown function (DUF490); Region: DUF490; pfam04357
360102000663	Outer membrane protein [Cell envelope biogenesis, outer membrane]; Region: COG0729
360102000664	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
360102000665	Surface antigen; Region: Bac_surface_Ag; pfam01103
360102000666	methionine sulfoxide reductase A; Provisional; Region: PRK00058
360102000667	Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253
360102000668	Domain of unknown function DUF21; Region: DUF21; pfam01595
360102000669	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
360102000670	Transporter associated domain; Region: CorC_HlyC; smart01091
360102000671	Protein of unknown function (DUF1107); Region: DUF1107; pfam06526
360102000672	Predicted transcriptional regulator [General function prediction only]; Region: COG3054
360102000673	CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in...; Region: CysQ; cd01638
360102000674	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]; Region: SuhB; COG0483
360102000675	active site
360102000676	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed; Region: cpdB; PRK09420
360102000677	Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain; Region: MPP_CpdB_N; cd07410
360102000678	active site
360102000679	metal binding site [ion binding]; metal-binding site
360102000680	5'-nucleotidase, C-terminal domain; Region: 5_nucleotid_C; pfam02872
360102000681	iron-sulfur cluster repair di-iron protein; Provisional; Region: PRK10992
360102000682	Domain of Unknown function (DUF542); Region: ScdA_N; pfam04405
360102000683	Hemerythrin-like domain; Region: Hr-like; cd12108
360102000684	Fe binding site [ion binding]; other site
360102000685	peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK11570
360102000686	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Region: FKBP_N; pfam01346
360102000687	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
360102000688	Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]; Region: OapA; COG3061
360102000689	Opacity-associated protein A LysM-like domain; Region: OapA; pfam04225
360102000690	Protein of unknown function (DUF3757); Region: DUF3757; pfam12582
360102000691	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102000692	50S ribosomal protein L9; Reviewed; Region: rplI; PRK00137
360102000693	Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281
360102000694	Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948
360102000695	30S ribosomal protein S18; Reviewed; Region: rpsR; PRK00391
360102000696	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
360102000697	dimer interface [polypeptide binding]; other site
360102000698	ssDNA binding site [nucleotide binding]; other site
360102000699	tetramer (dimer of dimers) interface [polypeptide binding]; other site
360102000700	30S ribosomal protein S6; Reviewed; Region: rpsF; PRK00453
360102000701	Predicted esterase [General function prediction only]; Region: COG0400
360102000702	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
360102000703	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102000704	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102000705	DNA-binding interface [nucleotide binding]; DNA binding site
360102000706	Integrase core domain; Region: rve; pfam00665
360102000707	transposase/IS protein; Provisional; Region: PRK09183
360102000708	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102000709	Walker A motif; other site
360102000710	ATP binding site [chemical binding]; other site
360102000711	Walker B motif; other site
360102000712	phosphoenolpyruvate carboxylase; Reviewed; Region: PRK00009
360102000713	Phosphoenolpyruvate carboxylase [Energy production and conversion]; Region: Ppc; COG2352
360102000714	acetylornithine deacetylase; Provisional; Region: PRK05111
360102000715	M20 Peptidase acetylornithine deacetylase; Region: M20_ArgE; cd03894
360102000716	metal binding site [ion binding]; metal-binding site
360102000717	putative dimer interface [polypeptide binding]; other site
360102000718	N-acetyl-gamma-glutamyl-phosphate reductase; Validated; Region: argC; PRK00436
360102000719	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
360102000720	AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of...; Region: AAK_NAGK-NC; cd04249
360102000721	nucleotide binding site [chemical binding]; other site
360102000722	N-acetyl-L-glutamate binding site [chemical binding]; other site
360102000723	argininosuccinate lyase; Provisional; Region: PRK04833
360102000724	Argininosuccinate lyase (argininosuccinase, ASAL); Region: Argininosuccinate_lyase; cd01359
360102000725	active sites [active]
360102000726	tetramer interface [polypeptide binding]; other site
360102000727	TonB-dependent heme/hemoglobin receptor family protein; Region: TonB-hemin; TIGR01785
360102000728	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102000729	N-terminal plug; other site
360102000730	ligand-binding site [chemical binding]; other site
360102000731	Heme-binding protein A (HasA); Region: HasA; pfam06438
360102000732	ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]; Region: ArpD; COG4618
360102000733	ATP-binding cassette domain of PrtD, subfamily C; Region: ABCC_Protease_Secretion; cd03246
360102000734	Walker A/P-loop; other site
360102000735	ATP binding site [chemical binding]; other site
360102000736	Q-loop/lid; other site
360102000737	ABC transporter signature motif; other site
360102000738	Walker B; other site
360102000739	D-loop; other site
360102000740	H-loop/switch region; other site
360102000741	type I secretion membrane fusion protein, HlyD family; Region: type_I_hlyD; TIGR01843
360102000742	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102000743	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102000744	Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]; Region: TonB; COG0810
360102000745	Gram-negative bacterial tonB protein; Region: TonB; pfam03544
360102000746	dihydrolipoamide dehydrogenase; Validated; Region: PRK06292
360102000747	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
360102000748	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
360102000749	Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5...; Region: PRX5_like; cd03013
360102000750	catalytic triad [active]
360102000751	dimer interface [polypeptide binding]; other site
360102000752	Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a...; Region: GRX_hybridPRX5; cd03029
360102000753	GSH binding site [chemical binding]; other site
360102000754	catalytic residues [active]
360102000755	DNA-binding transcriptional regulator OxyR; Provisional; Region: PRK11151
360102000756	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102000757	The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_OxyR; cd08411
360102000758	dimerization interface [polypeptide binding]; other site
360102000759	soluble pyridine nucleotide transhydrogenase; Provisional; Region: PRK05249
360102000760	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
360102000761	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
360102000762	DNA-binding transcriptional repressor FabR; Provisional; Region: PRK11202
360102000763	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
360102000764	hypothetical protein; Provisional; Region: PRK11056
360102000765	tRNA (uracil-5-)-methyltransferase; Validated; Region: PRK05031
360102000766	vitamin B12/cobalamin outer membrane transporter; Provisional; Region: btuB; PRK10641
360102000767	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102000768	N-terminal plug; other site
360102000769	ligand-binding site [chemical binding]; other site
360102000770	glutamate racemase; Provisional; Region: PRK00865
360102000771	Periplasmic binding domain of ABC-type YtfQ-like transport systems; Region: PBP1_YtfQ_like; cd06309
360102000772	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
360102000773	putative ligand binding site [chemical binding]; other site
360102000774	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
360102000775	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102000776	Walker A/P-loop; other site
360102000777	ATP binding site [chemical binding]; other site
360102000778	Q-loop/lid; other site
360102000779	ABC transporter signature motif; other site
360102000780	Walker B; other site
360102000781	D-loop; other site
360102000782	H-loop/switch region; other site
360102000783	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102000784	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102000785	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102000786	TM-ABC transporter signature motif; other site
360102000787	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102000788	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102000789	TM-ABC transporter signature motif; other site
360102000790	transcriptional regulator HdfR; Provisional; Region: PRK03601
360102000791	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102000792	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
360102000793	dimerization interface [polypeptide binding]; other site
360102000794	hypothetical protein; Provisional; Region: PRK11027
360102000795	Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]; Region: COG0606
360102000796	Subunit ChlI of Mg-chelatase; Region: ChlI; pfam13541
360102000797	Magnesium chelatase, subunit ChlI; Region: Mg_chelatase; pfam01078
360102000798	Magnesium chelatase, subunit ChlI; Region: Mg_chelatase_2; pfam13335
360102000799	acetolactate synthase 2 catalytic subunit; Reviewed; Region: PRK08978
360102000800	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
360102000801	PYR/PP interface [polypeptide binding]; other site
360102000802	dimer interface [polypeptide binding]; other site
360102000803	TPP binding site [chemical binding]; other site
360102000804	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
360102000805	Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the...; Region: TPP_AHAS; cd02015
360102000806	TPP-binding site [chemical binding]; other site
360102000807	dimer interface [polypeptide binding]; other site
360102000808	acetolactate synthase 2 regulatory subunit; Provisional; Region: ilvM; PRK11152
360102000809	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]; Region: IlvE; COG0115
360102000810	BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids  leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and...; Region: BCAT_beta_family; cd01557
360102000811	homodimer interface [polypeptide binding]; other site
360102000812	substrate-cofactor binding pocket; other site
360102000813	catalytic residue [active]
360102000814	dihydroxy-acid dehydratase; Provisional; Region: PRK12448
360102000815	threonine dehydratase; Reviewed; Region: PRK09224
360102000816	Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562
360102000817	tetramer interface [polypeptide binding]; other site
360102000818	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102000819	catalytic residue [active]
360102000820	First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase); Region: ACT_ThrD-I_1; cd04906
360102000821	putative Ile/Val binding site [chemical binding]; other site
360102000822	Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase); Region: ACT_ThrD-I_2; cd04907
360102000823	putative Ile/Val binding site [chemical binding]; other site
360102000824	Enterobacterial putative membrane protein (DUF943); Region: DUF943; pfam06092
360102000825	Enterobacterial putative membrane protein (DUF943); Region: DUF943; pfam06092
360102000826	Protein of unknown function (DUF3289); Region: DUF3289; cl11840
360102000827	Protein of unknown function (DUF3289); Region: DUF3289; cl11840
360102000828	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102000829	DNA-binding transcriptional regulator IlvY; Provisional; Region: PRK11716
360102000830	The C-terminal substrate binding of LysR-type transcriptional regulator IlvY, which activates the expression of ilvC gene that encoding acetohydroxy acid isomeroreductase for the biosynthesis of branched amino acids; contains the type 2 periplasmic bindin; Region: PBP2_IlvY; cd08430
360102000831	putative dimerization interface [polypeptide binding]; other site
360102000832	ketol-acid reductoisomerase; Validated; Region: PRK05225
360102000833	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvN; pfam07991
360102000834	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvC; pfam01450
360102000835	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvC; pfam01450
360102000836	S-type Pyocin; Region: Pyocin_S; pfam06958
360102000837	HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
360102000838	active site
360102000839	Colicin immunity protein / pyocin immunity protein; Region: Colicin_Pyocin; pfam01320
360102000840	cystathionine beta-lyase; Provisional; Region: PRK09028
360102000841	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
360102000842	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102000843	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
360102000844	Fimbrial protein; Region: Fimbrial; cl01416
360102000845	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
360102000846	PapC N-terminal domain; Region: PapC_N; pfam13954
360102000847	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102000848	PapC C-terminal domain; Region: PapC_C; pfam13953
360102000849	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
360102000850	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102000851	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
360102000852	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
360102000853	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102000854	MULE transposase domain; Region: MULE; pfam10551
360102000855	Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]; Region: COG3823
360102000856	PPIC-type PPIASE domain; Region: Rotamase_2; cl08278
360102000857	ATP-dependent DNA helicase Rep; Provisional; Region: PRK10919
360102000858	Part of AAA domain; Region: AAA_19; pfam13245
360102000859	Family description; Region: UvrD_C_2; pfam13538
360102000860	guanosine pentaphosphate phosphohydrolase; Provisional; Region: PRK11031
360102000861	Ppx/GppA phosphatase family; Region: Ppx-GppA; pfam02541
360102000862	Ppx/GppA phosphatase family; Region: Ppx-GppA; pfam02541
360102000863	ATP-dependent RNA helicase RhlB; Provisional; Region: PRK04837
360102000864	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
360102000865	ATP binding site [chemical binding]; other site
360102000866	Mg++ binding site [ion binding]; other site
360102000867	motif III; other site
360102000868	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102000869	nucleotide binding region [chemical binding]; other site
360102000870	ATP-binding site [chemical binding]; other site
360102000871	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
360102000872	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
360102000873	catalytic residues [active]
360102000874	transcription termination factor Rho; Provisional; Region: rho; PRK09376
360102000875	Rho termination factor, N-terminal domain; Region: Rho_N; smart00959
360102000876	Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA...; Region: Rho_CSD; cd04459
360102000877	RNA binding site [nucleotide binding]; other site
360102000878	Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the...; Region: rho_factor; cd01128
360102000879	multimer interface [polypeptide binding]; other site
360102000880	Walker A motif; other site
360102000881	ATP binding site [chemical binding]; other site
360102000882	Walker B motif; other site
360102000883	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Provisional; Region: PRK15119
360102000884	This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond...; Region: GT_WecA_like; cd06853
360102000885	Mg++ binding site [ion binding]; other site
360102000886	putative catalytic motif [active]
360102000887	substrate binding site [chemical binding]; other site
360102000888	lipopolysaccharide biosynthesis protein WzzE; Provisional; Region: PRK11638
360102000889	Chain length determinant protein; Region: Wzz; cl15801
360102000890	UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]; Region: WecB; COG0381
360102000891	Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase  family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues; Region: GT1_UDP-GlcNAc_2-Epimerase; cd03786
360102000892	active site
360102000893	homodimer interface [polypeptide binding]; other site
360102000894	UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional; Region: wecC; PRK11064
360102000895	Ketopantoate reductase PanE/ApbA; Region: ApbA; pfam02558
360102000896	UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984
360102000897	UDP binding domain; Region: UDPG_MGDP_dh_C; smart00984
360102000898	dTDP-glucose 4,6-dehydratase; Provisional; Region: PRK10217
360102000899	dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs; Region: dTDP_GD_SDR_e; cd05246
360102000900	NAD binding site [chemical binding]; other site
360102000901	substrate binding site [chemical binding]; other site
360102000902	homodimer interface [polypeptide binding]; other site
360102000903	active site
360102000904	G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase; Region: G1P_TT_short; cd02538
360102000905	glucose-1-phosphate thymidylyltransferase, short form; Region: rmlA; TIGR01207
360102000906	substrate binding site; other site
360102000907	tetramer interface; other site
360102000908	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
360102000909	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
360102000910	Coenzyme A binding pocket [chemical binding]; other site
360102000911	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
360102000912	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
360102000913	inhibitor-cofactor binding pocket; inhibition site
360102000914	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102000915	catalytic residue [active]
360102000916	Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Region: RfbX; COG2244
360102000917	Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; Region: MATE_like_10; cd13125
360102000918	4-alpha-L-fucosyltransferase glycosyl transferase group 56; Region: Glyco_transf_56; pfam07429
360102000919	putative common antigen polymerase; Provisional; Region: PRK02975
360102000920	Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]; Region: WecG; COG1922
360102000921	The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common...; Region: Glyco_transf_WecG_TagA; cd06533
360102000922	putative transport protein YifK; Provisional; Region: PRK10746
360102000923	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102000924	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102000925	DNA-binding interface [nucleotide binding]; DNA binding site
360102000926	Integrase core domain; Region: rve; pfam00665
360102000927	transposase/IS protein; Provisional; Region: PRK09183
360102000928	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102000929	Walker A motif; other site
360102000930	ATP binding site [chemical binding]; other site
360102000931	Walker B motif; other site
360102000932	3-oxoacyl-(acyl carrier protein) synthase II; Provisional; Region: PRK14691
360102000933	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102000934	putative protoheme IX biogenesis protein; Provisional; Region: PRK10747
360102000935	HemY protein N-terminus; Region: HemY_N; pfam07219
360102000936	putative uroporphyrinogen III C-methyltransferase; Provisional; Region: PRK10920
360102000937	Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]; Region: HemX; COG2959
360102000938	uroporphyrinogen-III synthase; Reviewed; Region: hemD; PRK05928
360102000939	Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in...; Region: HemD; cd06578
360102000940	active site
360102000941	porphobilinogen deaminase; Reviewed; Region: hemC; PRK00072
360102000942	Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of...; Region: HMBS; cd00494
360102000943	domain interfaces; other site
360102000944	active site
360102000945	Adenylate cyclase [Nucleotide transport and metabolism]; Region: CyaA; COG3072
360102000946	Adenylate cyclase NT domain; Region: Adenyl_cycl_N; pfam12633
360102000947	Adenylate cyclase, class-I; Region: Adenylate_cycl; pfam01295
360102000948	Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate...; Region: Frataxin; cd00503
360102000949	putative iron binding site [ion binding]; other site
360102000950	Predicted small periplasmic lipoprotein [Cell motility and secretion]; Region: COG5567
360102000951	diaminopimelate epimerase; Provisional; Region: dapF; PRK00450
360102000952	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
360102000953	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
360102000954	hypothetical protein; Provisional; Region: PRK10963
360102000955	Site-specific recombinase XerC [DNA replication, recombination, and repair]; Region: XerC; COG4973
360102000956	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
360102000957	active site
360102000958	DNA binding site [nucleotide binding]
360102000959	Int/Topo IB signature motif; other site
360102000960	flavin mononucleotide phosphatase; Provisional; Region: PRK10748
360102000961	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102000962	motif II; other site
360102000963	DNA-dependent helicase II; Provisional; Region: uvrD; PRK11773
360102000964	Part of AAA domain; Region: AAA_19; pfam13245
360102000965	Family description; Region: UvrD_C_2; pfam13538
360102000966	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
360102000967	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
360102000968	Uncharacterized conserved protein [Function unknown]; Region: COG5441
360102000969	Uncharacterized protein family (UPF0261); Region: UPF0261; pfam06792
360102000970	TIM-barrel signal transduction protein; Region: TIM-br_sig_trns; pfam09370
360102000971	Escherichia coli Mg2+ transporter CorA_like subgroup; Region: EcCorA-like_1; cd12835
360102000972	CorA-like Mg2+ transporter protein; Region: CorA; pfam01544
360102000973	Cl binding site [ion binding]; other site
360102000974	oligomer interface [polypeptide binding]; other site
360102000975	putative chloramphenical resistance permease RarD; Provisional; Region: PRK15430
360102000976	EamA-like transporter family; Region: EamA; cl17759
360102000977	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
360102000978	CoenzymeA binding site [chemical binding]; other site
360102000979	subunit interaction site [polypeptide binding]; other site
360102000980	PHB binding site; other site
360102000981	The outer membrane phospholipase A (OMPLA) is an integral membrane enzyme that catalyses the hydrolysis of acylester bonds in phospholipids using calcium as a cofactor. The enzyme has a fold of transmembrane beta-barrels and is widespread among...; Region: OMPLA; cd00541
360102000982	substrate binding site [chemical binding]; other site
360102000983	dimerization interface [polypeptide binding]; other site
360102000984	active site
360102000985	calcium binding site [ion binding]; other site
360102000986	ATP-dependent DNA helicase RecQ; Provisional; Region: PRK11057
360102000987	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
360102000988	ATP binding site [chemical binding]; other site
360102000989	putative Mg++ binding site [ion binding]; other site
360102000990	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102000991	nucleotide binding region [chemical binding]; other site
360102000992	ATP-binding site [chemical binding]; other site
360102000993	This DNA-binding domain is found in the RecQ helicase among others and has a helix-turn-helix structure; Region: RQC; smart00956
360102000994	HRDC domain; Region: HRDC; pfam00570
360102000995	threonine efflux system; Provisional; Region: PRK10229
360102000996	homoserine/homoserine lactone efflux protein; Provisional; Region: rhtB; PRK10520
360102000997	lysophospholipase L2; Provisional; Region: PRK10749
360102000998	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
360102000999	putative hydrolase; Provisional; Region: PRK10976
360102001000	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102001001	active site
360102001002	motif I; other site
360102001003	motif II; other site
360102001004	haloacid dehalogenase-like hydrolase; Region: HAD; cl17202
360102001005	Viral enhancin protein; Region: Enhancin; pfam03272
360102001006	Viral enhancin protein; Region: Enhancin; pfam03272
360102001007	glycerophosphodiester phosphodiesterase; Provisional; Region: glpQ; PRK11143
360102001008	Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins; Region: GDPD_EcGlpQ_like; cd08600
360102001009	active site
360102001010	catalytic site [active]
360102001011	metal binding site [ion binding]; metal-binding site
360102001012	sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional; Region: glpA; PRK11101
360102001013	hydroxyglutarate oxidase; Provisional; Region: PRK11728
360102001014	BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; pfam04324
360102001015	anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated; Region: PRK05329
360102001016	glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; Region: glycerol3P_GlpB; TIGR03378
360102001017	glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; Region: glycerol3P_GlpC; TIGR03379
360102001018	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
360102001019	Cysteine-rich domain; Region: CCG; pfam02754
360102001020	Cysteine-rich domain; Region: CCG; pfam02754
360102001021	hypothetical protein; Provisional; Region: PRK11615
360102001022	hypothetical protein; Provisional; Region: PRK11212
360102001023	SirA (also known as UvrY,  and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA.  A...; Region: SirA; cd03423
360102001024	CPxP  motif; other site
360102001025	zinc/cadmium/mercury/lead-transporting ATPase; Provisional; Region: zntA; PRK11033
360102001026	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
360102001027	metal-binding site [ion binding]
360102001028	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
360102001029	haloacid dehalogenase-like hydrolase; Region: HAD; pfam12710
360102001030	Predicted membrane protein [Function unknown]; Region: COG3714
360102001031	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4517
360102001032	Protein of unknown function (DUF2500); Region: DUF2500; pfam10694
360102001033	hypothetical protein; Provisional; Region: PRK10910
360102001034	N6-adenine-specific methylase [DNA replication, recombination, and repair]; Region: COG0742
360102001035	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102001036	S-adenosylmethionine binding site [chemical binding]; other site
360102001037	signal recognition particle-docking protein FtsY; Provisional; Region: PRK10416
360102001038	SRP54-type protein, helical bundle domain; Region: SRP54_N; pfam02881
360102001039	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
360102001040	P loop; other site
360102001041	GTP binding site [chemical binding]; other site
360102001042	cell division protein FtsE; Provisional; Region: PRK10908
360102001043	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102001044	Walker A/P-loop; other site
360102001045	ATP binding site [chemical binding]; other site
360102001046	Q-loop/lid; other site
360102001047	ABC transporter signature motif; other site
360102001048	Walker B; other site
360102001049	D-loop; other site
360102001050	H-loop/switch region; other site
360102001051	cell division ABC transporter subunit FtsX; Provisional; Region: ftsX; PRK11026
360102001052	putative protein insertion permease FtsX; Region: ftsX; TIGR00439
360102001053	RNA polymerase factor sigma-32; Reviewed; Region: PRK06596
360102001054	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
360102001055	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
360102001056	DNA binding residues [nucleotide binding]
360102001057	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102001058	Acetyltransferase (GNAT) domain; Region: DUF3749; pfam12568
360102001059	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
360102001060	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
360102001061	dimerization interface [polypeptide binding]; other site
360102001062	ligand binding site [chemical binding]; other site
360102001063	transposase/IS protein; Provisional; Region: PRK09183
360102001064	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102001065	Walker A motif; other site
360102001066	ATP binding site [chemical binding]; other site
360102001067	Walker B motif; other site
360102001068	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102001069	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102001070	DNA-binding interface [nucleotide binding]; DNA binding site
360102001071	Integrase core domain; Region: rve; pfam00665
360102001072	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102001073	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
360102001074	TM-ABC transporter signature motif; other site
360102001075	leucine/isoleucine/valine transporter permease subunit; Provisional; Region: livM; PRK11301
360102001076	Domain of unknown function (DUF3382); Region: DUF3382; pfam11862
360102001077	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
360102001078	TM-ABC transporter signature motif; other site
360102001079	leucine/isoleucine/valine transporter ATP-binding subunit; Provisional; Region: livG; PRK11300
360102001080	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
360102001081	Walker A/P-loop; other site
360102001082	ATP binding site [chemical binding]; other site
360102001083	Q-loop/lid; other site
360102001084	ABC transporter signature motif; other site
360102001085	Walker B; other site
360102001086	D-loop; other site
360102001087	H-loop/switch region; other site
360102001088	leucine/isoleucine/valine transporter ATP-binding subunit; Provisional; Region: livF; PRK11614
360102001089	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
360102001090	Walker A/P-loop; other site
360102001091	ATP binding site [chemical binding]; other site
360102001092	Q-loop/lid; other site
360102001093	ABC transporter signature motif; other site
360102001094	Walker B; other site
360102001095	D-loop; other site
360102001096	H-loop/switch region; other site
360102001097	putative fimbrial protein TcfA; Provisional; Region: PRK15308
360102001098	putative fimbrial protein TcfA; Provisional; Region: PRK15308
360102001099	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102001100	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
360102001101	glycerol-3-phosphate transporter periplasmic binding protein; Provisional; Region: PRK10974
360102001102	ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]; Region: LplB; COG4209
360102001103	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102001104	dimer interface [polypeptide binding]; other site
360102001105	conserved gate region; other site
360102001106	putative PBP binding loops; other site
360102001107	ABC-ATPase subunit interface; other site
360102001108	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
360102001109	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102001110	dimer interface [polypeptide binding]; other site
360102001111	conserved gate region; other site
360102001112	putative PBP binding loops; other site
360102001113	ABC-ATPase subunit interface; other site
360102001114	glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650
360102001115	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
360102001116	Walker A/P-loop; other site
360102001117	ATP binding site [chemical binding]; other site
360102001118	Q-loop/lid; other site
360102001119	ABC transporter signature motif; other site
360102001120	Walker B; other site
360102001121	D-loop; other site
360102001122	H-loop/switch region; other site
360102001123	TOBE domain; Region: TOBE_2; pfam08402
360102001124	cytoplasmic glycerophosphodiester phosphodiesterase; Provisional; Region: ugpQ; PRK09454
360102001125	Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins; Region: GDPD_EcUgpQ_like; cd08562
360102001126	putative active site [active]
360102001127	catalytic site [active]
360102001128	putative metal binding site [ion binding]; other site
360102001129	Predicted permeases [General function prediction only]; Region: COG0679
360102001130	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
360102001131	DNA-binding transcriptional regulator MetR; Provisional; Region: PRK15421
360102001132	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102001133	The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold; Region: PBP2_MetR; cd08441
360102001134	putative dimerization interface [polypeptide binding]; other site
360102001135	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional; Region: PRK05222
360102001136	CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme...; Region: CIMS_N_terminal_like; cd03312
360102001137	THF binding site; other site
360102001138	CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme...; Region: CIMS_C_terminal_like; cd03311
360102001139	substrate binding site [chemical binding]; other site
360102001140	THF binding site; other site
360102001141	zinc-binding site [ion binding]; other site
360102001142	Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG0412
360102001143	BAAT / Acyl-CoA thioester hydrolase C terminal; Region: BAAT_C; pfam08840
360102001144	uridine phosphorylase; Provisional; Region: PRK11178
360102001145	uridine phosphorylase; Region: Uridine-psphlse; TIGR01718
360102001146	Protein tyrosine/serine phosphatase [Signal transduction mechanisms]; Region: COG2365
360102001147	Tyrosine phosphatase family C-terminal region; Region: Y_phosphatase3C; pfam13348
360102001148	Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]; Region: CstA; COG1966
360102001149	Carbon starvation protein CstA; Region: CstA; pfam02554
360102001150	C-terminal domain on CstA (DUF4161); Region: DUF4161; pfam13722
360102001151	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
360102001152	Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]; Region: COG1322
360102001153	RmuC family; Region: RmuC; pfam02646
360102001154	ubiE/COQ5 methyltransferase family; Region: Ubie_methyltran; pfam01209
360102001155	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102001156	S-adenosylmethionine binding site [chemical binding]; other site
360102001157	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4627
360102001158	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3165
360102001159	SCP-2 sterol transfer family; Region: SCP2; pfam02036
360102001160	putative ubiquinone biosynthesis protein UbiB; Reviewed; Region: ubiB; PRK04750
360102001161	2-polyprenylphenol 6-hydroxylase; Region: UbiB; TIGR01982
360102001162	mttA/Hcf106 family; Region: MttA_Hcf106; cl00788
360102001163	sec-independent translocase; Provisional; Region: PRK01770
360102001164	twin-arginine protein translocation system subunit TatC; Provisional; Region: PRK10921
360102001165	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
360102001166	active site
360102001167	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102001168	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102001169	DNA-binding interface [nucleotide binding]; DNA binding site
360102001170	Integrase core domain; Region: rve; pfam00665
360102001171	transposase/IS protein; Provisional; Region: PRK09183
360102001172	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102001173	Walker A motif; other site
360102001174	ATP binding site [chemical binding]; other site
360102001175	Walker B motif; other site
360102001176	Protein of unknown function (DUF4232); Region: DUF4232; pfam14016
360102001177	ribonuclease activity regulator protein RraA; Provisional; Region: PRK09372
360102001178	1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated; Region: PRK06080
360102001179	UbiA prenyltransferase family; Region: UbiA; pfam01040
360102001180	ATP-dependent protease ATP-binding subunit HslU; Provisional; Region: hslU; PRK05201
360102001181	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102001182	Walker A motif; other site
360102001183	ATP binding site [chemical binding]; other site
360102001184	AAA domain (Cdc48 subfamily); Region: AAA_2; pfam07724
360102001185	Walker B motif; other site
360102001186	arginine finger; other site
360102001187	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
360102001188	Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the...; Region: protease_HslV; cd01913
360102001189	active site
360102001190	HslU subunit interaction site [polypeptide binding]; other site
360102001191	cell division protein FtsN; Provisional; Region: PRK12757
360102001192	Sporulation related domain; Region: SPOR; cl10051
360102001193	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102001194	DNA binding site [nucleotide binding]
360102001195	DNA-binding transcriptional regulator CytR; Provisional; Region: PRK11041
360102001196	domain linker motif; other site
360102001197	Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria; Region: PBP1_LacI_like_6; cd06284
360102001198	dimerization interface [polypeptide binding]; other site
360102001199	ligand binding site [chemical binding]; other site
360102001200	primosome assembly protein PriA; Validated; Region: PRK05580
360102001201	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
360102001202	ATP binding site [chemical binding]; other site
360102001203	putative Mg++ binding site [ion binding]; other site
360102001204	helicase superfamily c-terminal domain; Region: HELICc; smart00490
360102001205	ATP-binding site [chemical binding]; other site
360102001206	50S ribosomal protein L31; Reviewed; Region: rpmE; PRK00019
360102001207	Predicted membrane protein [Function unknown]; Region: COG4682
360102001208	yiaA/B two helix domain; Region: YiaAB; pfam05360
360102001209	yiaA/B two helix domain; Region: YiaAB; pfam05360
360102001210	Met Repressor, MetJ.  MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox'...; Region: Met_repressor_MetJ; cd00490
360102001211	dimerization interface [polypeptide binding]; other site
360102001212	DNA binding site [nucleotide binding]
360102001213	corepressor binding sites; other site
360102001214	CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614
360102001215	homodimer interface [polypeptide binding]; other site
360102001216	substrate-cofactor binding pocket; other site
360102001217	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102001218	catalytic residue [active]
360102001219	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
360102001220	bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional; Region: metL; PRK09466
360102001221	AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli...; Region: AAK_AK-HSDH; cd04257
360102001222	putative catalytic residues [active]
360102001223	putative nucleotide binding site [chemical binding]; other site
360102001224	putative aspartate binding site [chemical binding]; other site
360102001225	Homoserine dehydrogenase, NAD binding domain; Region: NAD_binding_3; pfam03447
360102001226	Homoserine dehydrogenase; Region: Homoserine_dh; pfam00742
360102001227	Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase...; Region: MTHFR; cd00537
360102001228	FAD binding site [chemical binding]; other site
360102001229	putative transposase OrfB; Reviewed; Region: PHA02517
360102001230	HTH-like domain; Region: HTH_21; pfam13276
360102001231	Integrase core domain; Region: rve; pfam00665
360102001232	Integrase core domain; Region: rve_2; pfam13333
360102001233	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
360102001234	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102001235	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102001236	Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]; Region: MelB; COG2211
360102001237	melibiose:sodium symporter; Provisional; Region: PRK10429; cl15392
360102001238	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
360102001239	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102001240	N-terminal plug; other site
360102001241	ligand-binding site [chemical binding]; other site
360102001242	Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: IucD; COG3486
360102001243	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
360102001244	Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: RhbC; COG4264
360102001245	IucA / IucC family; Region: IucA_IucC; pfam04183
360102001246	Ferric iron reductase FhuF-like transporter; Region: FhuF; pfam06276
360102001247	Acetyltransferase (GNAT) domain; Region: Acetyltransf_8; pfam13523
360102001248	Siderophore biosynthesis protein domain; Region: AlcB; smart01006
360102001249	IucA / IucC family; Region: IucA_IucC; pfam04183
360102001250	Ferric iron reductase FhuF-like transporter; Region: FhuF; pfam06276
360102001251	IucA / IucC family; Region: IucA_IucC; pfam04183
360102001252	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102001253	Major Facilitator Superfamily; Region: MFS_1; pfam07690
360102001254	putative substrate translocation pore; other site
360102001255	Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]; Region: PcaH; COG3485
360102001256	Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to  the...; Region: intradiol_dioxygenase_like; cd03457
360102001257	putative active site [active]
360102001258	Predicted peptidase [General function prediction only]; Region: COG4099
360102001259	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
360102001260	Autoinducer binding domain; Region: Autoind_bind; pfam03472
360102001261	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102001262	DNA binding residues [nucleotide binding]
360102001263	dimerization interface [polypeptide binding]; other site
360102001264	Autoinducer synthetase; Region: Autoind_synth; pfam00765
360102001265	CAAX protease self-immunity; Region: Abi; pfam02517
360102001266	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
360102001267	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
360102001268	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
360102001269	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3516
360102001270	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3517
360102001271	Protein of unknown function (DUF877); Region: DUF877; pfam05943
360102001272	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3522
360102001273	Bacterial protein of unknown function (DUF876); Region: DUF876; pfam05936
360102001274	Type VI protein secretion system component VasF [Intracellular    trafficking, secretion, and vesicular transport]; Region: COG3455
360102001275	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
360102001276	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
360102001277	ligand binding site [chemical binding]; other site
360102001278	type VI secretion system effector, Hcp1 family; Region: VI_effect_Hcp1; TIGR03344
360102001279	type VI secretion ATPase, ClpV1 family; Region: VI_ClpV1; TIGR03345
360102001280	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102001281	Walker A motif; other site
360102001282	ATP binding site [chemical binding]; other site
360102001283	Walker B motif; other site
360102001284	arginine finger; other site
360102001285	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102001286	Walker A motif; other site
360102001287	ATP binding site [chemical binding]; other site
360102001288	Walker B motif; other site
360102001289	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
360102001290	Rhs element Vgr protein; Region: vgr_GE; TIGR01646
360102001291	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
360102001292	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
360102001293	Putative type VI secretion system Rhs element Vgr; Region: T6SS_Vgr; pfam13296
360102001294	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4253
360102001295	Peptidase family M23; Region: Peptidase_M23; pfam01551
360102001296	lysozyme_like domain.  This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases; Region: lysozyme_like; cl00222
360102001297	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
360102001298	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
360102001299	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
360102001300	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
360102001301	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4253
360102001302	Peptidase family M23; Region: Peptidase_M23; pfam01551
360102001303	lysozyme_like domain.  This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases; Region: lysozyme_like; cl00222
360102001304	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
360102001305	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
360102001306	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
360102001307	Transposase and inactivated derivatives, IS1 family [DNA replication, recombination, and repair]; Region: InsB; COG1662
360102001308	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4253
360102001309	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
360102001310	DNA binding site [nucleotide binding]
360102001311	active site
360102001312	Int/Topo IB signature motif; other site
360102001313	ornithine decarboxylase; Provisional; Region: PRK13578
360102001314	Orn/Lys/Arg decarboxylase, N-terminal domain; Region: OKR_DC_1_N; pfam03709
360102001315	Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine...; Region: Orn_deC_like; cd00615
360102001316	homodimer interface [polypeptide binding]; other site
360102001317	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102001318	catalytic residue [active]
360102001319	Orn/Lys/Arg decarboxylase, C-terminal domain; Region: OKR_DC_1_C; pfam03711
360102001320	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879
360102001321	Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Region: PBP1_ABC_sugar_binding_like_9; cd06318
360102001322	putative ligand binding site [chemical binding]; other site
360102001323	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
360102001324	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102001325	Walker A/P-loop; other site
360102001326	ATP binding site [chemical binding]; other site
360102001327	Q-loop/lid; other site
360102001328	ABC transporter signature motif; other site
360102001329	Walker B; other site
360102001330	D-loop; other site
360102001331	H-loop/switch region; other site
360102001332	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102001333	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102001334	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102001335	TM-ABC transporter signature motif; other site
360102001336	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
360102001337	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102001338	N-terminal plug; other site
360102001339	ligand-binding site [chemical binding]; other site
360102001340	ferrichrome/ferrioxamine B periplasmic transporter; Provisional; Region: PRK14048
360102001341	Periplasmic binding protein TroA_f.  These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a...; Region: TroA_f; cd01139
360102001342	putative ligand binding residues [chemical binding]; other site
360102001343	murein transglycosylase C; Provisional; Region: mltC; PRK11671
360102001344	Domain of unknown function (DUF3393); Region: DUF3393; pfam11873
360102001345	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
360102001346	N-acetyl-D-glucosamine binding site [chemical binding]; other site
360102001347	catalytic residue [active]
360102001348	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2924
360102001349	adenine DNA glycosylase; Provisional; Region: PRK10880
360102001350	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
360102001351	minor groove reading motif; other site
360102001352	helix-hairpin-helix signature motif; other site
360102001353	substrate binding pocket [chemical binding]; other site
360102001354	active site
360102001355	iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3); Region: FES; smart00525
360102001356	DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread  A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important...; Region: DNA_Glycosylase_C; cd03431
360102001357	DNA binding and oxoG recognition site [nucleotide binding]
360102001358	tRNA (guanine-N(7)-)-methyltransferase; Reviewed; Region: trmB; PRK00121
360102001359	hypothetical protein; Provisional; Region: PRK11702
360102001360	Glutaminase [Amino acid transport and metabolism]; Region: GlsA; COG2066
360102001361	glutaminase; Provisional; Region: PRK00971
360102001362	hypothetical protein; Provisional; Region: PRK10626
360102001363	Protein of unknown function (DUF2884); Region: DUF2884; pfam11101
360102001364	Protein of unknown function (DUF2884); Region: DUF2884; pfam11101
360102001365	hypothetical protein; Provisional; Region: PRK10626
360102001366	Peptidase C80 family; Region: Peptidase_C80; pfam11713
360102001367	Peptidase C80 family; Region: Peptidase_C80; pfam11713
360102001368	RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG2931
360102001369	HemN family oxidoreductase; Provisional; Region: PRK05660
360102001370	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102001371	FeS/SAM binding site; other site
360102001372	HemN C-terminal domain; Region: HemN_C; pfam06969
360102001373	NTPase/HAM1.  This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A...; Region: HAM1; cd00515
360102001374	active site
360102001375	dimerization interface [polypeptide binding]; other site
360102001376	hypothetical protein; Validated; Region: PRK05090
360102001377	YGGT family; Region: YGGT; pfam02325
360102001378	Predicted integral membrane protein [Function unknown]; Region: COG0762
360102001379	pyrroline-5-carboxylate reductase; Reviewed; Region: PRK11880
360102001380	NADP oxidoreductase coenzyme F420-dependent; Region: F420_oxidored; cl17232
360102001381	Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins; Region: PLPDE_III_Yggs_like; cd06824
360102001382	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
360102001383	catalytic residue [active]
360102001384	Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilT; COG2805
360102001385	Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism...; Region: PilT; cd01131
360102001386	Walker A motif; other site
360102001387	ATP binding site [chemical binding]; other site
360102001388	Walker B motif; other site
360102001389	agmatine deiminase; Provisional; Region: PRK13551
360102001390	agmatine deiminase; Region: agmatine_aguA; TIGR03380
360102001391	N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases); Region: CPA; cd07573
360102001392	N-carbamoylputrescine amidase; Region: agmatine_aguB; TIGR03381
360102001393	putative active site; other site
360102001394	catalytic triad [active]
360102001395	putative dimer interface [polypeptide binding]; other site
360102001396	Holliday junction resolvase-like protein; Reviewed; Region: PRK00109
360102001397	hypothetical protein; Validated; Region: PRK00228
360102001398	glutathione synthetase; Provisional; Region: PRK05246
360102001399	Prokaryotic glutathione synthetase, N-terminal domain; Region: GSH-S_N; pfam02951
360102001400	Prokaryotic glutathione synthetase, ATP-grasp domain; Region: GSH-S_ATP; pfam02955
360102001401	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1385
360102001402	RNA methyltransferase, RsmE family; Region: TIGR00046
360102001403	DNA-specific endonuclease I; Provisional; Region: PRK15137
360102001404	Endonuclease I [DNA replication, recombination, and repair]; Region: EndA; COG2356
360102001405	hypothetical protein; Provisional; Region: PRK04860
360102001406	Zn-dependent metalloprotease, SprT family [General function prediction only]; Region: SprT; COG3091
360102001407	S-adenosylmethionine synthetase; Validated; Region: PRK05250
360102001408	S-adenosylmethionine synthetase, N-terminal domain; Region: S-AdoMet_synt_N; pfam00438
360102001409	S-adenosylmethionine synthetase, central domain; Region: S-AdoMet_synt_M; pfam02772
360102001410	S-adenosylmethionine synthetase, C-terminal domain; Region: S-AdoMet_synt_C; pfam02773
360102001411	Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]; Region: SpeA; COG1166
360102001412	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase; Region: PLPDE_III_ADC; cd06830
360102001413	dimer interface [polypeptide binding]; other site
360102001414	active site
360102001415	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
360102001416	catalytic residues [active]
360102001417	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; Region: PLPDE_III; cl00261
360102001418	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102001419	Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a...; Region: Rieske_RO_ferredoxin; cd03528
360102001420	[2Fe-2S] cluster binding site [ion binding]; other site
360102001421	Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]; Region: HtpX; COG0501
360102001422	transketolase; Reviewed; Region: PRK12753
360102001423	Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012
360102001424	TPP-binding site [chemical binding]; other site
360102001425	dimer interface [polypeptide binding]; other site
360102001426	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
360102001427	PYR/PP interface [polypeptide binding]; other site
360102001428	dimer interface [polypeptide binding]; other site
360102001429	TPP binding site [chemical binding]; other site
360102001430	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
360102001431	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102001432	erythrose 4-phosphate dehydrogenase; Provisional; Region: PRK13535
360102001433	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Region: Gp_dh_N; smart00846
360102001434	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800
360102001435	Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level...; Region: Phosphoglycerate_kinase; cd00318
360102001436	Phosphoglycerate kinase; Region: PGK; pfam00162
360102001437	substrate binding site [chemical binding]; other site
360102001438	hinge regions; other site
360102001439	ADP binding site [chemical binding]; other site
360102001440	catalytic site [active]
360102001441	fructose-bisphosphate aldolase; Provisional; Region: PRK09197
360102001442	Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is...; Region: FBP_aldolase_IIA; cd00946
360102001443	active site
360102001444	intersubunit interface [polypeptide binding]; other site
360102001445	zinc binding site [ion binding]; other site
360102001446	Na+ binding site [ion binding]; other site
360102001447	mechanosensitive channel MscS; Provisional; Region: PRK10334
360102001448	Conserved TM helix; Region: TM_helix; pfam05552
360102001449	Mechanosensitive ion channel; Region: MS_channel; pfam00924
360102001450	LysE type translocator; Region: LysE; cl00565
360102001451	transposase/IS protein; Provisional; Region: PRK09183
360102001452	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102001453	Walker A motif; other site
360102001454	ATP binding site [chemical binding]; other site
360102001455	Walker B motif; other site
360102001456	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102001457	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102001458	DNA-binding interface [nucleotide binding]; DNA binding site
360102001459	Integrase core domain; Region: rve; pfam00665
360102001460	LysE type translocator; Region: LysE; cl00565
360102001461	Uncharacterized conserved protein [Function unknown]; Region: COG2968
360102001462	oxidative stress defense protein; Provisional; Region: PRK11087
360102001463	chromosome replication initiation inhibitor protein; Validated; Region: PRK03635
360102001464	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102001465	The C-terminal substrate binding domain of LysR-type transcriptional regulator, ArgP (IciA), for arginine exporter (ArgO); contains the type 2 periplasmic binding fold; Region: PBP2_IciA_ArgP; cd08428
360102001466	putative dimerization interface [polypeptide binding]; other site
360102001467	RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the...; Region: RPI_A; cd01398
360102001468	tetramer (dimer of dimers) interface [polypeptide binding]; other site
360102001469	active site
360102001470	dimer interface [polypeptide binding]; other site
360102001471	D-3-phosphoglycerate dehydrogenase; Provisional; Region: PRK11790
360102001472	Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Region: PGDH_3; cd12176
360102001473	ligand binding site [chemical binding]; other site
360102001474	NAD binding site [chemical binding]; other site
360102001475	tetramer interface [polypeptide binding]; other site
360102001476	catalytic site [active]
360102001477	C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria; Region: ACT_3PGDH; cd04901
360102001478	L-serine binding site [chemical binding]; other site
360102001479	ACT domain interface; other site
360102001480	5-formyltetrahydrofolate cyclo-ligase family; Region: 5-FTHF_cyc-lig; pfam01812
360102001481	5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]; Region: COG0212; cl00360
360102001482	Z-ring-associated protein; Provisional; Region: PRK10972
360102001483	hypothetical protein; Reviewed; Region: PRK01736
360102001484	proline aminopeptidase P II; Provisional; Region: PRK10879
360102001485	Aminopeptidase P, N-terminal domain; Region: AMP_N; pfam05195
360102001486	Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on...; Region: Prolidase; cd01087
360102001487	active site
360102001488	2-octaprenyl-6-methoxyphenyl hydroxylase; Validated; Region: PRK05732
360102001489	2-polyprenyl-6-methoxyphenol 4-hydroxylase; Region: UbiH; TIGR01984
360102001490	oxidoreductase; Provisional; Region: PRK08013
360102001491	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; Region: Ubi-OHases; TIGR01988
360102001492	glycine cleavage system aminomethyltransferase T; Reviewed; Region: gcvT; PRK00389
360102001493	Glycine cleavage T-protein C-terminal barrel domain; Region: GCV_T_C; pfam08669
360102001494	Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and...; Region: GCS_H; cd06848
360102001495	lipoyl attachment site [posttranslational modification]; other site
360102001496	glycine dehydrogenase; Provisional; Region: PRK05367
360102001497	Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1; Region: GDC-P; cd00613
360102001498	tetramer interface [polypeptide binding]; other site
360102001499	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102001500	catalytic residue [active]
360102001501	Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1; Region: GDC-P; cd00613
360102001502	tetramer interface [polypeptide binding]; other site
360102001503	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102001504	catalytic residue [active]
360102001505	Lipocalin-like domain; Region: Lipocalin_5; pfam13924
360102001506	Autotransporter adhesin [Intracellular trafficking and secretion / Extracellular structures]; Region: Hia; COG5295
360102001507	YadA-like C-terminal region; Region: YadA; pfam03895
360102001508	hemolysin; Provisional; Region: PRK15087
360102001509	channel protein, hemolysin III family; Region: hlyIII; TIGR01065
360102001510	Predicted small integral membrane protein [Function unknown]; Region: COG5472
360102001511	putative global regulator; Reviewed; Region: PRK09559
360102001512	folate-binding protein YgfZ; Region: ygfZ_signature; TIGR03317
360102001513	hypothetical protein; Provisional; Region: PRK10878
360102001514	Protein of unknown function (DUF1434); Region: DUF1434; pfam07254
360102001515	DNA-binding response regulator CreB; Provisional; Region: PRK11083
360102001516	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102001517	active site
360102001518	phosphorylation site [posttranslational modification]
360102001519	intermolecular recognition site; other site
360102001520	dimerization interface [polypeptide binding]; other site
360102001521	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102001522	DNA binding site [nucleotide binding]
360102001523	sensory histidine kinase CreC; Provisional; Region: PRK11100
360102001524	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102001525	dimer interface [polypeptide binding]; other site
360102001526	phosphorylation site [posttranslational modification]
360102001527	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102001528	ATP binding site [chemical binding]; other site
360102001529	Mg2+ binding site [ion binding]; other site
360102001530	G-X-G motif; other site
360102001531	Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]; Region: CreD; COG4452
360102001532	flavodoxin FldB; Provisional; Region: PRK12359
360102001533	site-specific tyrosine recombinase XerD; Reviewed; Region: xerD; PRK00283
360102001534	XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains. XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination...; Region: INT_XerDC; cd00798
360102001535	active site
360102001536	Int/Topo IB signature motif; other site
360102001537	protein disulfide isomerase II DsbC; Provisional; Region: PRK10877
360102001538	DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds...; Region: DsbA_DsbC_DsbG; cd03020
360102001539	dimerization domain [polypeptide binding]; other site
360102001540	dimer interface [polypeptide binding]; other site
360102001541	catalytic residues [active]
360102001542	ssDNA exonuclease RecJ; Provisional; Region: PRK11070
360102001543	DHH family; Region: DHH; pfam01368
360102001544	DHHA1 domain; Region: DHHA1; pfam02272
360102001545	peptide chain release factor 2; Provisional; Region: PRK08787
360102001546	This domain is found in peptide chain release factors; Region: PCRF; smart00937
360102001547	RF-1 domain; Region: RF-1; pfam00472
360102001548	lysyl-tRNA synthetase; Reviewed; Region: lysS; PRK00484
360102001549	LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop; Region: LysRS_N; cd04322
360102001550	dimer interface [polypeptide binding]; other site
360102001551	putative anticodon binding site; other site
360102001552	Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three...; Region: LysRS_core; cd00775
360102001553	motif 1; other site
360102001554	active site
360102001555	motif 2; other site
360102001556	motif 3; other site
360102001557	Domain of unknown function (DUF4102); Region: DUF4102; pfam13356
360102001558	transposase/IS protein; Provisional; Region: PRK09183
360102001559	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102001560	Walker A motif; other site
360102001561	ATP binding site [chemical binding]; other site
360102001562	Walker B motif; other site
360102001563	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102001564	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102001565	DNA-binding interface [nucleotide binding]; DNA binding site
360102001566	Integrase core domain; Region: rve; pfam00665
360102001567	Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801
360102001568	Integrase [DNA replication, recombination, and repair]; Region: XerC; COG0582
360102001569	active site
360102001570	Int/Topo IB signature motif; other site
360102001571	Ash protein family; Region: Phage_ASH; pfam10554
360102001572	Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]; Region: RelE; COG2026
360102001573	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
360102001574	non-specific DNA binding site [nucleotide binding]; other site
360102001575	salt bridge; other site
360102001576	sequence-specific DNA binding site [nucleotide binding]; other site
360102001577	Motility quorum-sensing regulator (MqsR); Region: MqsR; cd12869
360102001578	peptide binding site [polypeptide binding]; other site
360102001579	antitoxin MqsA for MqsR toxin; Region: MqsA; cd12870
360102001580	toxin interface [polypeptide binding]; other site
360102001581	putative zinc finger/helix-turn-helix protein, YgiT family; Region: CxxCG_CxxCG_HTH; TIGR03830
360102001582	Zn binding site [ion binding]; other site
360102001583	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
360102001584	non-specific DNA binding site [nucleotide binding]; other site
360102001585	salt bridge; other site
360102001586	sequence-specific DNA binding site [nucleotide binding]; other site
360102001587	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4643
360102001588	Zinc-binding domain of primase-helicase; Region: Prim_Zn_Ribbon; smart00778
360102001589	Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from...; Region: TOPRIM; cl00718
360102001590	D5 N terminal like; Region: D5_N; smart00885
360102001591	phage/plasmid primase, P4 family, C-terminal domain; Region: primase_Cterm; TIGR01613
360102001592	Poxvirus D5 protein-like; Region: Pox_D5; pfam03288
360102001593	Phage derived protein Gp49-like (DUF891); Region: Gp49; pfam05973
360102001594	Predicted transcriptional regulator [Transcription]; Region: AlpA; COG3311
360102001595	Fic family protein [Function unknown]; Region: COG3177
360102001596	Fic/DOC family; Region: Fic; pfam02661
360102001597	PAAR motif; Region: PAAR_motif; pfam05488
360102001598	Pyocin large subunit [General function prediction only]; Region: COG5529
360102001599	S-type Pyocin; Region: Pyocin_S; pfam06958
360102001600	Cysteine-rich CPCC; Region: Cys_rich_CPCC; pfam14206
360102001601	Protein of unknown function (DUF3142); Region: DUF3142; pfam11340
360102001602	PAAR motif; Region: PAAR_motif; pfam05488
360102001603	Domain of Unknown Function with PDB structure (DUF3861); Region: DUF3861; pfam12977
360102001604	Predicted transcriptional regulators [Transcription]; Region: COG1695
360102001605	Transcriptional regulator PadR-like family; Region: PadR; pfam03551
360102001606	hypothetical protein; Provisional; Region: PRK11479
360102001607	Orthopoxvirus protein of unknown function (DUF830); Region: DUF830; cl13998
360102001608	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879
360102001609	Periplasmic binding proteins specific to rhizopines; Region: PBP1_rhizopine_binding_like; cd06301
360102001610	putative ligand binding site [chemical binding]; other site
360102001611	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102001612	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102001613	TM-ABC transporter signature motif; other site
360102001614	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
360102001615	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102001616	Walker A/P-loop; other site
360102001617	ATP binding site [chemical binding]; other site
360102001618	Q-loop/lid; other site
360102001619	ABC transporter signature motif; other site
360102001620	Walker B; other site
360102001621	D-loop; other site
360102001622	H-loop/switch region; other site
360102001623	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102001624	glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650
360102001625	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
360102001626	Walker A/P-loop; other site
360102001627	ATP binding site [chemical binding]; other site
360102001628	Q-loop/lid; other site
360102001629	ABC transporter signature motif; other site
360102001630	Walker B; other site
360102001631	D-loop; other site
360102001632	H-loop/switch region; other site
360102001633	TOBE domain; Region: TOBE_2; pfam08402
360102001634	Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]; Region: MalE; COG2182
360102001635	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
360102001636	DAK2 domain; Region: Dak2; cl03685
360102001637	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102001638	dimer interface [polypeptide binding]; other site
360102001639	conserved gate region; other site
360102001640	ABC-ATPase subunit interface; other site
360102001641	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
360102001642	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102001643	dimer interface [polypeptide binding]; other site
360102001644	conserved gate region; other site
360102001645	putative PBP binding loops; other site
360102001646	ABC-ATPase subunit interface; other site
360102001647	Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]; Region: COG3867
360102001648	Beta-galactosidase [Carbohydrate transport and metabolism]; Region: LacA; COG1874
360102001649	Beta-galactosidase; Region: Glyco_hydro_42; pfam02449
360102001650	A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain; Region: A4_beta-galactosidase_middle_domain; cd03143
360102001651	Beta-galactosidase C-terminal domain; Region: Glyco_hydro_42C; pfam08533
360102001652	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
360102001653	active site turn [active]
360102001654	phosphorylation site [posttranslational modification]
360102001655	The Maltoporin-like channels (LamB porin) form a trimeric structure which facilitate the diffusion of maltodextrins and other sugars across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an 18-strand antiparallel...; Region: Maltoporin-like; cd01346
360102001656	trimer interface; other site
360102001657	sugar binding site [chemical binding]; other site
360102001658	lac repressor; Reviewed; Region: lacI; PRK09526
360102001659	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102001660	DNA binding site [nucleotide binding]
360102001661	domain linker motif; other site
360102001662	Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_LacI; cd01574
360102001663	ligand binding site [chemical binding]; other site
360102001664	dimerization interface (open form) [polypeptide binding]; other site
360102001665	dimerization interface (closed form) [polypeptide binding]; other site
360102001666	Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]; Region: COG1501
360102001667	Galactose mutarotase-like; Region: Gal_mutarotas_2; pfam13802
360102001668	Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic...; Region: GH31_glycosidase_Aec37; cd06599
360102001669	putative active site [active]
360102001670	putative catalytic site [active]
360102001671	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102001672	D-galactonate transporter; Region: 2A0114; TIGR00893
360102001673	putative substrate translocation pore; other site
360102001674	Transcriptional regulators [Transcription]; Region: PurR; COG1609
360102001675	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102001676	DNA binding site [nucleotide binding]
360102001677	domain linker motif; other site
360102001678	Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily; Region: PBP1_LacI_sugar_binding_like; cd06267
360102001679	dimerization interface [polypeptide binding]; other site
360102001680	ligand binding site [chemical binding]; other site
360102001681	Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Region: GATase1_DJ-1; cd03135
360102001682	DJ-1 family protein; Region: not_thiJ; TIGR01383
360102001683	conserved cys residue [active]
360102001684	Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1; Region: TBP_aldolase_IIB; cd00947
360102001685	fructose-bisphosphate aldolase; Provisional; Region: PRK09197
360102001686	intersubunit interface [polypeptide binding]; other site
360102001687	active site
360102001688	zinc binding site [ion binding]; other site
360102001689	Na+ binding site [ion binding]; other site
360102001690	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4289
360102001691	Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]; Region: AslA; COG3119
360102001692	Sulfatase; Region: Sulfatase; pfam00884
360102001693	anaerobic sulfatase-maturating enzyme; Region: sulfatase_rSAM; TIGR03942
360102001694	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102001695	FeS/SAM binding site; other site
360102001696	radical SAM additional 4Fe4S-binding SPASM domain; Region: rSAM_more_4Fe4S; TIGR04085
360102001697	Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]; Region: COG4225
360102001698	2-deoxy-D-gluconate 3-dehydrogenase; Provisional; Region: PRK12481
360102001699	gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Region: Ga5DH-like_SDR_c; cd05347
360102001700	NADP binding site [chemical binding]; other site
360102001701	homodimer interface [polypeptide binding]; other site
360102001702	active site
360102001703	N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]; Region: NagA; COG1820
360102001704	N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to...; Region: NagA; cd00854
360102001705	active site
360102001706	dimer interface [polypeptide binding]; other site
360102001707	PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_man; cd00006
360102001708	active pocket/dimerization site; other site
360102001709	active site
360102001710	phosphorylation site [posttranslational modification]
360102001711	Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]; Region: ManZ; COG3716
360102001712	Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]; Region: ManY; COG3715
360102001713	PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_man; cd00001
360102001714	active site
360102001715	phosphorylation site [posttranslational modification]
360102001716	putative sugar isomerase, AgaS family; Region: agaS_fam; TIGR02815
360102001717	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
360102001718	dimer interface [polypeptide binding]; other site
360102001719	active site
360102001720	AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases; Region: SIS_AgaS_like; cd05010
360102001721	putative active site [active]
360102001722	tagatose 6-phosphate aldolase subunit KbaZ; Provisional; Region: PRK15458
360102001723	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
360102001724	helix_turn_helix, Deoxyribose operon repressor; Region: HTH_DEOR; smart00420
360102001725	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
360102001726	Sulfatase; Region: Sulfatase; cl17466
360102001727	Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]; Region: AslA; COG3119
360102001728	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102001729	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102001730	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102001731	DNA-binding interface [nucleotide binding]; DNA binding site
360102001732	Integrase core domain; Region: rve; pfam00665
360102001733	transposase/IS protein; Provisional; Region: PRK09183
360102001734	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102001735	Walker A motif; other site
360102001736	ATP binding site [chemical binding]; other site
360102001737	Walker B motif; other site
360102001738	Transposase IS200 like; Region: Y1_Tnp; cl00848
360102001739	Lyase, N terminal; Region: Lyase_N; pfam09092
360102001740	Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues; Region: GAG_Lyase; cd01083
360102001741	substrate binding site [chemical binding]; other site
360102001742	catalytic residues [active]
360102001743	Autotransporter beta-domain; Region: Autotransporter; pfam03797
360102001744	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeC; cd03378
360102001745	active site clefts [active]
360102001746	zinc binding site [ion binding]; other site
360102001747	dimer interface [polypeptide binding]; other site
360102001748	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cl17355
360102001749	Type IV pilus biogenesis; Region: Pilus_PilP; pfam11356
360102001750	Type II secretory pathway, component PulD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulD; COG1450
360102001751	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
360102001752	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
360102001753	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
360102001754	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
360102001755	type II secretion system protein E; Region: type_II_gspE; TIGR02533
360102001756	PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129
360102001757	Walker A motif; other site
360102001758	ATP binding site [chemical binding]; other site
360102001759	Walker B motif; other site
360102001760	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
360102001761	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
360102001762	prepilin-type N-terminal cleavage/methylation domain; Region: IV_pilin_GFxxxE; TIGR02532
360102001763	type II secretion system protein G; Region: typeII_sec_gspG; TIGR01710
360102001764	Type II secretion system (T2SS), protein G; Region: T2SG; pfam08334
360102001765	Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulG; COG2165
360102001766	Type IV pilin N-term methylation site GFxxxE; Region: N_methyl_2; pfam13544
360102001767	type II secretion system protein I; Region: gspI; TIGR01707
360102001768	Type II secretion system (T2SS), protein I; Region: T2SI; pfam02501
360102001769	Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]; Region: PulJ; COG4795
360102001770	Type II secretion system (T2SS), protein J; Region: T2SJ; pfam11612
360102001771	Type II secretory pathway, component PulK [Intracellular trafficking and secretion]; Region: PulK; COG3156
360102001772	Type II secretory pathway, component PulL [Intracellular trafficking and secretion]; Region: PulL; COG3297
360102001773	Type II secretion system (T2SS), protein L; Region: T2SL; pfam05134
360102001774	GspL periplasmic domain; Region: GspL_C; pfam12693
360102001775	Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: PulO; COG1989
360102001776	Bacterial Peptidase A24 N-terminal domain; Region: DiS_P_DiS; pfam06750
360102001777	Type IV leader peptidase family; Region: Peptidase_A24; pfam01478
360102001778	Bacterial chaperone lipoprotein (PulS_OutS); Region: PulS_OutS; cl09898
360102001779	DNA-binding winged-HTH domains [Transcription]; Region: CadC; COG3710
360102001780	DNA binding site [nucleotide binding]
360102001781	methyl-accepting chemotaxis protein I; Provisional; Region: PRK15041
360102001782	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cd00181
360102001783	dimer interface [polypeptide binding]; other site
360102001784	ligand binding site [chemical binding]; other site
360102001785	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102001786	dimerization interface [polypeptide binding]; other site
360102001787	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
360102001788	dimer interface [polypeptide binding]; other site
360102001789	putative CheW interface [polypeptide binding]; other site
360102001790	Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]; Region: COG3531
360102001791	DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the...; Region: DsbA_FrnE_like; cd03025
360102001792	catalytic residues [active]
360102001793	Zn-dependent hydrolases, including glyoxylases [General function prediction only]; Region: GloB; COG0491
360102001794	transcriptional activator TtdR; Provisional; Region: PRK09801
360102001795	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102001796	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
360102001797	putative effector binding pocket; other site
360102001798	dimerization interface [polypeptide binding]; other site
360102001799	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102001800	putative substrate translocation pore; other site
360102001801	Major Facilitator Superfamily; Region: MFS_1; pfam07690
360102001802	DNA-binding transcriptional regulator LysR; Provisional; Region: PRK11013
360102001803	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102001804	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
360102001805	dimerization interface [polypeptide binding]; other site
360102001806	diaminopimelate decarboxylase; Provisional; Region: PRK11165
360102001807	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase; Region: PLPDE_III_DapDC; cd06828
360102001808	active site
360102001809	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
360102001810	substrate binding site [chemical binding]; other site
360102001811	catalytic residues [active]
360102001812	dimer interface [polypeptide binding]; other site
360102001813	DNA-binding transcriptional regulator GalR; Provisional; Region: PRK10727
360102001814	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102001815	DNA binding site [nucleotide binding]
360102001816	domain linker motif; other site
360102001817	Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism; Region: PBP1_GalS_like; cd06270
360102001818	dimerization interface (closed form) [polypeptide binding]; other site
360102001819	ligand binding site [chemical binding]; other site
360102001820	The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its...; Region: MopB_DMSOR-BSOR-TMAOR; cd02769
360102001821	molybdopterin guanine dinucleotide-containing S/N-oxide reductases; Region: bisC_fam; TIGR00509
360102001822	molybdopterin cofactor binding site [chemical binding]; other site
360102001823	substrate binding site [chemical binding]; other site
360102001824	The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its...; Region: MopB_CT_DMSOR-BSOR-TMAOR; cd02793
360102001825	molybdopterin cofactor binding site; other site
360102001826	bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated; Region: PRK08043
360102001827	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
360102001828	putative acyl-acceptor binding pocket; other site
360102001829	C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas); Region: AAS_C; cd05909
360102001830	acyl-activating enzyme (AAE) consensus motif; other site
360102001831	putative AMP binding site [chemical binding]; other site
360102001832	lysophospholipid transporter LplT; Provisional; Region: PRK11195
360102001833	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102001834	putative substrate translocation pore; other site
360102001835	Uncharacterized protein conserved in bacteria (DUF2058); Region: DUF2058; cl01201
360102001836	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
360102001837	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
360102001838	active site
360102001839	catalytic tetrad [active]
360102001840	MutH is a 28kD endonuclease involved in methyl-directed DNA mismatch repair in gram negative bacteria. MutH is both sequence-specific and methylation-specific, introducing a nick in the unmethylated strand of a hemi-methylated d(GATC) DNA duplex.   MutH...; Region: MutH_Sau3AI; cd00583
360102001841	putative DNA-binding cleft [nucleotide binding]; other site
360102001842	putative DNA clevage site; other site
360102001843	molecular lever; other site
360102001844	Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant...; Region: Ap4A_hydrolase_plant_like; cd03671
360102001845	putative active site [active]
360102001846	Ap4A binding site [chemical binding]; other site
360102001847	nudix motif; other site
360102001848	putative metal binding site [ion binding]; other site
360102001849	fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional; Region: PRK11061
360102001850	Domain present in phytochromes and cGMP-specific phosphodiesterases; Region: GAF; smart00065
360102001851	PEP-utilising enzyme, N-terminal; Region: PEP-utilisers_N; pfam05524
360102001852	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
360102001853	PEP-utilising enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
360102001854	prolipoprotein diacylglyceryl transferase; Reviewed; Region: PRK00052
360102001855	thymidylate synthase; Reviewed; Region: thyA; PRK01827
360102001856	Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the...; Region: TS_Pyrimidine_HMase; cd00351
360102001857	dimerization interface [polypeptide binding]; other site
360102001858	active site
360102001859	hypothetical protein; Provisional; Region: PRK10506
360102001860	Type IV pilin N-term methylation site GFxxxE; Region: N_methyl_2; cl06830
360102001861	hypothetical protein; Provisional; Region: PRK10557
360102001862	Protein of unknown function (DUF2509); Region: DUF2509; pfam10713
360102001863	hypothetical protein; Provisional; Region: PRK10332
360102001864	Prepilin peptidase dependent protein C term (DUF3728); Region: DUF3728; pfam12528
360102001865	Exonuclease V gamma subunit [DNA replication, recombination, and repair]; Region: RecC; COG1330
360102001866	exonuclease V subunit gamma; Provisional; Region: recC; PRK11069
360102001867	protease3; Provisional; Region: PRK15101
360102001868	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
360102001869	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
360102001870	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
360102001871	exonuclease V subunit beta; Provisional; Region: recB; PRK10876
360102001872	exonuclease V subunit alpha; Provisional; Region: recD; PRK10875
360102001873	AAA domain; Region: AAA_30; pfam13604
360102001874	Family description; Region: UvrD_C_2; pfam13538
360102001875	N-acetylglutamate synthase; Validated; Region: PRK05279
360102001876	AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an...; Region: AAK_NAGS-ABP; cd04237
360102001877	putative feedback inhibition sensing region; other site
360102001878	putative nucleotide binding site [chemical binding]; other site
360102001879	putative substrate binding site [chemical binding]; other site
360102001880	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
360102001881	Coenzyme A binding pocket [chemical binding]; other site
360102001882	AMIN domain; Region: AMIN; pfam11741
360102001883	N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: AmiC; COG0860
360102001884	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
360102001885	active site
360102001886	metal binding site [ion binding]; metal-binding site
360102001887	murein transglycosylase A; Provisional; Region: mltA; PRK11162
360102001888	MltA specific insert domain; Region: MltA; smart00925
360102001889	3D domain; Region: 3D; pfam06725
360102001890	sulfur acceptor protein CsdL; Provisional; Region: PRK15116
360102001891	Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like...; Region: YgdL_like; cd00755
360102001892	putative ATP binding site [chemical binding]; other site
360102001893	putative substrate interface [chemical binding]; other site
360102001894	cysteine desulfurase, sulfur acceptor subunit CsdE; Region: FeS_syn_CsdE; TIGR03391
360102001895	Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520
360102001896	Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS...; Region: SufS_like; cd06453
360102001897	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102001898	catalytic residue [active]
360102001899	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
360102001900	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102001901	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
360102001902	dimerization interface [polypeptide binding]; other site
360102001903	substrate binding pocket [chemical binding]; other site
360102001904	hypothetical protein; Provisional; Region: PRK10873
360102001905	putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional; Region: PRK11760
360102001906	FtsJ-like methyltransferase; Region: FtsJ; cl17430
360102001907	H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination; Region: H3TH_StructSpec-5'-nucleases; cl14815
360102001908	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102001909	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102001910	DNA-binding interface [nucleotide binding]; DNA binding site
360102001911	Integrase core domain; Region: rve; pfam00665
360102001912	transposase/IS protein; Provisional; Region: PRK09183
360102001913	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102001914	Walker A motif; other site
360102001915	ATP binding site [chemical binding]; other site
360102001916	Walker B motif; other site
360102001917	flap endonuclease-like protein; Provisional; Region: PRK09482
360102001918	PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859
360102001919	active site
360102001920	metal binding site 1 [ion binding]; metal-binding site
360102001921	putative 5' ssDNA interaction site; other site
360102001922	metal binding site 3; metal-binding site
360102001923	metal binding site 2 [ion binding]; metal-binding site
360102001924	H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898
360102001925	putative DNA binding site [nucleotide binding]; other site
360102001926	putative metal binding site [ion binding]; other site
360102001927	Predicted Rossmann fold nucleotide-binding protein [General function prediction only]; Region: COG1611
360102001928	Domain of unknown function (DUF3412); Region: DUF3412; pfam11892
360102001929	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2904
360102001930	7-cyano-7-deazaguanine reductase; Provisional; Region: queF; PRK11792
360102001931	Enzyme related to GTP cyclohydrolase I [General function prediction only]; Region: COG0780
360102001932	SecY interacting protein Syd; Provisional; Region: PRK04968
360102001933	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102001934	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3098
360102001935	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
360102001936	tRNA pseudouridine isomerase C; Region: PseudoU_synth_TruC; cd02563
360102001937	probable active site [active]
360102001938	flavodoxin; Provisional; Region: PRK08105
360102001939	hypothetical protein; Provisional; Region: PRK13677
360102001940	2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional; Region: dapD; PRK11830
360102001941	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA; Region: LbH_THP_succinylT; cd03350
360102001942	trimer interface [polypeptide binding]; other site
360102001943	active site
360102001944	substrate binding site [chemical binding]; other site
360102001945	CoA binding site [chemical binding]; other site
360102001946	PII uridylyl-transferase; Provisional; Region: PRK05007
360102001947	Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401
360102001948	metal binding triad; other site
360102001949	GlnD PII-uridylyltransferase; Region: GlnD_UR_UTase; pfam08335
360102001950	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl17215
360102001951	ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains; Region: ACT_UUR-like_1; cd04900
360102001952	C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains; Region: ACT_ACR-UUR-like_2; cd04899
360102001953	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
360102001954	active site
360102001955	Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425
360102001956	rRNA interaction site [nucleotide binding]; other site
360102001957	S8 interaction site; other site
360102001958	putative laminin-1 binding site; other site
360102001959	elongation factor Ts; Provisional; Region: tsf; PRK09377
360102001960	UBA/TS-N domain; Region: UBA; pfam00627
360102001961	Elongation factor TS; Region: EF_TS; pfam00889
360102001962	Elongation factor TS; Region: EF_TS; pfam00889
360102001963	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102001964	UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and...; Region: AAK_UMPK-PyrH-Ec; cd04254
360102001965	putative nucleotide binding site [chemical binding]; other site
360102001966	uridine monophosphate binding site [chemical binding]; other site
360102001967	homohexameric interface [polypeptide binding]; other site
360102001968	ribosome recycling factor; Reviewed; Region: frr; PRK00083
360102001969	Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation.  Thus ribosomes are "recycled" and ready for another...; Region: RRF; cd00520
360102001970	hinge region; other site
360102001971	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional; Region: PRK05447
360102001972	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Region: DXP_reductoisom; pfam02670
360102001973	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; Region: DXP_redisom_C; pfam08436
360102001974	DXP reductoisomerase C-terminal domain; Region: DXPR_C; pfam13288
360102001975	Undecaprenyl pyrophosphate synthase [Lipid metabolism]; Region: UppS; COG0020
360102001976	Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl...; Region: CIS_IPPS; cd00475
360102001977	catalytic residue [active]
360102001978	putative FPP diphosphate  binding site; other site
360102001979	putative FPP binding hydrophobic cleft; other site
360102001980	dimer interface [polypeptide binding]; other site
360102001981	putative IPP diphosphate binding site; other site
360102001982	CDP-diglyceride synthase; Provisional; Region: cdsA; PRK11624
360102001983	CDP-diglyceride synthetase [Lipid metabolism]; Region: CdsA; COG0575
360102001984	zinc metallopeptidase RseP; Provisional; Region: PRK10779
360102001985	RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163
360102001986	active site
360102001987	PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ...; Region: PDZ_metalloprotease; cd00989
360102001988	protein binding site [polypeptide binding]; other site
360102001989	PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ...; Region: PDZ_metalloprotease; cd00989
360102001990	protein binding site [polypeptide binding]; other site
360102001991	RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163
360102001992	putative substrate binding region [chemical binding]; other site
360102001993	outer membrane protein assembly factor YaeT; Provisional; Region: PRK11067
360102001994	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
360102001995	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
360102001996	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
360102001997	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
360102001998	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
360102001999	Surface antigen; Region: Bac_surface_Ag; pfam01103
360102002000	periplasmic chaperone; Provisional; Region: PRK10780
360102002001	Outer membrane protein (OmpH-like); Region: OmpH; smart00935
360102002002	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional; Region: lpxD; PRK00892
360102002003	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Region: LpxD; pfam04613
360102002004	UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2; Region: LbH_LpxD; cd03352
360102002005	trimer interface [polypeptide binding]; other site
360102002006	active site
360102002007	UDP-GlcNAc binding site [chemical binding]; other site
360102002008	lipid binding site [chemical binding]; lipid-binding site
360102002009	FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288
360102002010	UDP-N-acetylglucosamine acyltransferase; Provisional; Region: PRK05289
360102002011	UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic...; Region: LbH_UDP-GlcNAc_AT; cd03351
360102002012	active site
360102002013	lipid-A-disaccharide synthase; Reviewed; Region: lpxB; PRK00025
360102002014	ipid-A-disaccharide synthase; Provisional; Region: PRK14089
360102002015	bacterial Ribonuclease HII-like; Region: RNase_HII_bacteria_HII_like; cd07182
360102002016	RNA/DNA hybrid binding site [nucleotide binding]; other site
360102002017	active site
360102002018	DNA polymerase III subunit alpha; Validated; Region: dnaE; PRK05673
360102002019	Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE1; Region: PHP_PolIIIA_DnaE1; cd07433
360102002020	putative active site [active]
360102002021	putative PHP Thumb interface [polypeptide binding]; other site
360102002022	DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains...; Region: DnaE_OBF; cd04485
360102002023	generic binding surface II; other site
360102002024	generic binding surface I; other site
360102002025	acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated; Region: PRK05724
360102002026	acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional; Region: accA; CHL00198
360102002027	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_1; cd08352
360102002028	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
360102002029	putative metal binding site [ion binding]; other site
360102002030	tRNA(Ile)-lysidine synthetase; Provisional; Region: tilS; PRK10660
360102002031	N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992
360102002032	Ligand Binding Site [chemical binding]; other site
360102002033	TilS substrate binding domain; Region: TilS; pfam09179
360102002034	TilS substrate C-terminal domain; Region: TilS_C; pfam11734
360102002035	Cytochrome c553 [Energy production and conversion]; Region: COG2863
360102002036	Rho-binding antiterminator; Provisional; Region: PRK11625
360102002037	hypothetical protein; Provisional; Region: PRK04964
360102002038	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4681
360102002039	Protein chain release factor B [Translation, ribosomal structure and biogenesis]; Region: PrfB; COG1186
360102002040	hypothetical protein; Provisional; Region: PRK09256
360102002041	lipoprotein involved with copper homeostasis and adhesion; Provisional; Region: PRK10523
360102002042	NlpE N-terminal domain; Region: NlpE; pfam04170
360102002043	prolyl-tRNA synthetase; Provisional; Region: PRK09194
360102002044	Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ProRS_core_prok; cd00779
360102002045	dimer interface [polypeptide binding]; other site
360102002046	motif 1; other site
360102002047	active site
360102002048	motif 2; other site
360102002049	INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and...; Region: ProRS-INS; cd04334
360102002050	putative deacylase active site [active]
360102002051	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
360102002052	active site
360102002053	motif 3; other site
360102002054	ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding; Region: ProRS_anticodon_short; cd00861
360102002055	anticodon binding site; other site
360102002056	Escherichia coli YaeB and related proteins; Region: UPF0066; cd09281
360102002057	homodimer interaction site [polypeptide binding]; other site
360102002058	cofactor binding site; other site
360102002059	outer membrane lipoprotein; Reviewed; Region: rcsF; PRK10781
360102002060	DL-methionine transporter substrate-binding subunit; Provisional; Region: metQ; PRK11063
360102002061	lipoprotein, YaeC family; Region: TIGR00363
360102002062	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102002063	dimer interface [polypeptide binding]; other site
360102002064	conserved gate region; other site
360102002065	ABC-ATPase subunit interface; other site
360102002066	DL-methionine transporter ATP-binding subunit; Provisional; Region: metN; PRK11153
360102002067	ATP-binding cassette domain of methionine transporter; Region: ABC_MetN_methionine_transporter; cd03258
360102002068	Walker A/P-loop; other site
360102002069	ATP binding site [chemical binding]; other site
360102002070	Q-loop/lid; other site
360102002071	ABC transporter signature motif; other site
360102002072	Walker B; other site
360102002073	D-loop; other site
360102002074	H-loop/switch region; other site
360102002075	This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins; Region: NIL; smart00930
360102002076	D,D-heptose 1,7-bisphosphate phosphatase; Validated; Region: PRK08942
360102002077	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102002078	active site
360102002079	motif I; other site
360102002080	motif II; other site
360102002081	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
360102002082	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
360102002083	active site
360102002084	catalytic tetrad [active]
360102002085	hypothetical protein; Provisional; Region: PRK05421
360102002086	putative catalytic site [active]
360102002087	putative phosphate binding site [ion binding]; other site
360102002088	putative metal binding site [ion binding]; other site
360102002089	membrane-bound lytic murein transglycosylase D; Provisional; Region: mltD; PRK10783
360102002090	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
360102002091	N-acetyl-D-glucosamine binding site [chemical binding]; other site
360102002092	catalytic residue [active]
360102002093	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
360102002094	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
360102002095	hydroxyacylglutathione hydrolase; Region: GSH_gloB; TIGR03413
360102002096	Methyltransferase domain; Region: Methyltransf_11; pfam08241
360102002097	RNase HI family found mainly in prokaryotes; Region: RNase_HI_prokaryote_like; cd09278
360102002098	RNA/DNA hybrid binding site [nucleotide binding]; other site
360102002099	active site
360102002100	DNA polymerase III, epsilon subunit, Proteobacterial; Region: dnaQ_proteo; TIGR01406
360102002101	DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131
360102002102	active site
360102002103	catalytic site [active]
360102002104	substrate binding site [chemical binding]; other site
360102002105	uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain; Region: SLC-NCS1sbd_u1; cd11555
360102002106	Permease for cytosine/purines, uracil, thiamine, allantoin; Region: Transp_cyt_pur; pfam02133
360102002107	Na binding site [ion binding]; other site
360102002108	putative substrate binding site [chemical binding]; other site
360102002109	Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily; Region: CE4_SF; cl15692
360102002110	transposase/IS protein; Provisional; Region: PRK09183
360102002111	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102002112	Walker A motif; other site
360102002113	ATP binding site [chemical binding]; other site
360102002114	Walker B motif; other site
360102002115	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102002116	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102002117	DNA-binding interface [nucleotide binding]; DNA binding site
360102002118	Integrase core domain; Region: rve; pfam00665
360102002119	Domain of unknown function (DUF4102); Region: DUF4102; pfam13356
360102002120	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3657
360102002121	Predicted transcriptional regulator [Transcription]; Region: COG3636
360102002122	AAA domain; Region: AAA_25; pfam13481
360102002123	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
360102002124	Walker A motif; other site
360102002125	ATP binding site [chemical binding]; other site
360102002126	Walker B motif; other site
360102002127	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4643
360102002128	Zinc-binding domain of primase-helicase; Region: Prim_Zn_Ribbon; smart00778
360102002129	TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_primases; cd01029
360102002130	active site
360102002131	metal binding site [ion binding]; metal-binding site
360102002132	interdomain interaction site; other site
360102002133	Ash protein family; Region: Phage_ASH; pfam10554
360102002134	Predicted transcriptional regulator [Transcription]; Region: AlpA; COG3311
360102002135	Phage integrase, N-terminal; Region: Integrase_l_N; pfam12834
360102002136	Integrase; Region: Integrase_1; pfam12835
360102002137	Domain of unknown function (DUF4297); Region: DUF4297; pfam14130
360102002138	integrase; Provisional; Region: PRK09692
360102002139	Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801
360102002140	active site
360102002141	Int/Topo IB signature motif; other site
360102002142	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102002143	Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294
360102002144	SmpB-tmRNA interface; other site
360102002145	Coenzyme Q-binding protein COQ10p and similar proteins; Region: COQ10p_like; cd07813
360102002146	putative coenzyme Q binding site [chemical binding]; other site
360102002147	hypothetical protein; Validated; Region: PRK01777
360102002148	outer membrane biogenesis protein BamE; Provisional; Region: PRK11548
360102002149	SmpA / OmlA family; Region: SmpA_OmlA; pfam04355
360102002150	recombination and repair protein; Provisional; Region: PRK10869
360102002151	ATP-binding cassette domain of RecN; Region: ABC_RecN; cd03241
360102002152	Walker A/P-loop; other site
360102002153	ATP binding site [chemical binding]; other site
360102002154	Q-loop/lid; other site
360102002155	ATP-binding cassette domain of RecN; Region: ABC_RecN; cd03241
360102002156	Q-loop/lid; other site
360102002157	ABC transporter signature motif; other site
360102002158	Walker B; other site
360102002159	D-loop; other site
360102002160	H-loop/switch region; other site
360102002161	inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK03378
360102002162	inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK02231
360102002163	Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: GrpE; COG0576
360102002164	GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding; Region: GrpE; cd00446
360102002165	dimer interface [polypeptide binding]; other site
360102002166	hsp70 (ATPase domain) interactions [polypeptide binding]; other site
360102002167	Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS...; Region: EcCS_like; cd06114
360102002168	Citrate synthase [Energy production and conversion]; Region: GltA; COG0372
360102002169	dimer interface [polypeptide binding]; other site
360102002170	active site
360102002171	citrylCoA binding site [chemical binding]; other site
360102002172	NADH binding [chemical binding]; other site
360102002173	cationic pore residues; other site
360102002174	oxalacetate/citrate binding site [chemical binding]; other site
360102002175	coenzyme A binding site [chemical binding]; other site
360102002176	catalytic triad [active]
360102002177	Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the...; Region: SQR_TypeC_SdhC; cd03499
360102002178	Iron-sulfur protein interface; other site
360102002179	proximal quinone binding site [chemical binding]; other site
360102002180	SdhD (CybS) interface [polypeptide binding]; other site
360102002181	proximal heme binding site [chemical binding]; other site
360102002182	Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the...; Region: SQR_TypeC_SdhD; cd03494
360102002183	SdhC subunit interface [polypeptide binding]; other site
360102002184	proximal heme binding site [chemical binding]; other site
360102002185	cardiolipin binding site; other site
360102002186	Iron-sulfur protein interface; other site
360102002187	proximal quinone binding site [chemical binding]; other site
360102002188	succinate dehydrogenase flavoprotein subunit; Reviewed; Region: sdhA; PRK08958
360102002189	L-aspartate oxidase; Provisional; Region: PRK06175
360102002190	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
360102002191	succinate dehydrogenase iron-sulfur subunit; Reviewed; Region: sdhB; PRK05950
360102002192	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_3; pfam13085
360102002193	2-oxoglutarate dehydrogenase E1 component; Reviewed; Region: sucA; PRK09404
360102002194	Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of...; Region: TPP_E1_OGDC_like; cd02016
360102002195	TPP-binding site [chemical binding]; other site
360102002196	Transketolase, pyrimidine binding domain; Region: Transket_pyr; pfam02779
360102002197	dimer interface [polypeptide binding]; other site
360102002198	PYR/PP interface [polypeptide binding]; other site
360102002199	TPP binding site [chemical binding]; other site
360102002200	dihydrolipoamide succinyltransferase; Validated; Region: PRK05704
360102002201	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
360102002202	E3 interaction surface; other site
360102002203	lipoyl attachment site [posttranslational modification]; other site
360102002204	e3 binding domain; Region: E3_binding; pfam02817
360102002205	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
360102002206	succinyl-CoA synthetase subunit beta; Provisional; Region: sucC; PRK00696
360102002207	ATP-grasp domain; Region: ATP-grasp_2; pfam08442
360102002208	CoA-ligase; Region: Ligase_CoA; pfam00549
360102002209	succinyl-CoA synthetase subunit alpha; Validated; Region: PRK05678
360102002210	CoA binding domain; Region: CoA_binding; smart00881
360102002211	CoA-ligase; Region: Ligase_CoA; pfam00549
360102002212	cytochrome d terminal oxidase subunit 1; Provisional; Region: PRK15097
360102002213	Bacterial Cytochrome Ubiquinol Oxidase; Region: Bac_Ubq_Cox; cl00562
360102002214	cytochrome d ubiquinol oxidase subunit 2; Provisional; Region: PRK15003; cl12219
360102002215	Cytochrome oxidase subunit II; Region: Cyto_ox_2; pfam02322
360102002216	hypothetical protein; Provisional; Region: PRK10588
360102002217	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
360102002218	active site
360102002219	colicin uptake protein TolQ; Provisional; Region: PRK10801
360102002220	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
360102002221	colicin uptake protein TolR; Provisional; Region: PRK11024
360102002222	cell envelope integrity inner membrane protein TolA; Provisional; Region: tolA; PRK09510
360102002223	TolA C-terminal; Region: TolA; pfam06519
360102002224	translocation protein TolB; Provisional; Region: tolB; PRK03629
360102002225	TolB amino-terminal domain; Region: TolB_N; pfam04052
360102002226	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
360102002227	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
360102002228	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
360102002229	peptidoglycan-associated outer membrane lipoprotein; Provisional; Region: PRK10802
360102002230	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
360102002231	ligand binding site [chemical binding]; other site
360102002232	tol-pal system protein YbgF; Provisional; Region: PRK10803
360102002233	Tetratricopeptide repeat; Region: TPR_6; pfam13174
360102002234	quinolinate synthetase; Provisional; Region: PRK09375
360102002235	nicotinamide riboside transporter PnuC; Provisional; Region: PRK15397
360102002236	zinc transporter ZitB; Provisional; Region: PRK03557
360102002237	phospho-2-dehydro-3-deoxyheptonate aldolase; Validated; Region: PRK09261
360102002238	DAHP synthetase I family; Region: DAHP_synth_1; pfam00793
360102002239	transposase/IS protein; Provisional; Region: PRK09183
360102002240	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102002241	Walker A motif; other site
360102002242	ATP binding site [chemical binding]; other site
360102002243	Walker B motif; other site
360102002244	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102002245	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102002246	DNA-binding interface [nucleotide binding]; DNA binding site
360102002247	Integrase core domain; Region: rve; pfam00665
360102002248	Penicillin-binding protein 5, C-terminal domain; Region: PBP5_C; smart00936
360102002249	Amino acid permeases [Amino acid transport and metabolism]; Region: SdaC; COG0814
360102002250	serine transporter; Region: stp; TIGR00814
360102002251	DNA-binding transcriptional repressor DeoR; Provisional; Region: PRK10681
360102002252	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
360102002253	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
360102002254	2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family; Region: DeoC; cd00959
360102002255	intersubunit interface [polypeptide binding]; other site
360102002256	active site
360102002257	catalytic residue [active]
360102002258	PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from...; Region: PAP2_BcrC_like; cd03385
360102002259	active site
360102002260	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
360102002261	PAP2_like_6 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which mainly contains bacterial proteins, lacks functional characterization and may act as a membrane-associated lipid phosphatase; Region: PAP2_like_6; cd03396
360102002262	active site
360102002263	putative transporter; Provisional; Region: PRK04972
360102002264	AspT/YidE/YbjL antiporter duplication domain; Region: YidE_YbjL_dupl; TIGR01625
360102002265	TrkA-C domain; Region: TrkA_C; pfam02080
360102002266	TrkA-C domain; Region: TrkA_C; pfam02080
360102002267	AspT/YidE/YbjL antiporter duplication domain; Region: YidE_YbjL_dupl; TIGR01625
360102002268	Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide...; Region: GRX_family; cd02066
360102002269	GSH binding site [chemical binding]; other site
360102002270	catalytic residues [active]
360102002271	Protein of unknown function (DUF1418); Region: DUF1418; pfam07214
360102002272	Putative bacterial sensory transduction regulator; Region: YbjN; pfam10722
360102002273	putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional; Region: PRK10682
360102002274	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
360102002275	putrescine transporter ATP-binding subunit; Provisional; Region: potG; PRK11607
360102002276	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102002277	Walker A/P-loop; other site
360102002278	ATP binding site [chemical binding]; other site
360102002279	Q-loop/lid; other site
360102002280	ABC transporter signature motif; other site
360102002281	Walker B; other site
360102002282	D-loop; other site
360102002283	H-loop/switch region; other site
360102002284	TOBE domain; Region: TOBE_2; pfam08402
360102002285	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102002286	dimer interface [polypeptide binding]; other site
360102002287	conserved gate region; other site
360102002288	putative PBP binding loops; other site
360102002289	ABC-ATPase subunit interface; other site
360102002290	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
360102002291	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102002292	dimer interface [polypeptide binding]; other site
360102002293	conserved gate region; other site
360102002294	putative PBP binding loops; other site
360102002295	ABC-ATPase subunit interface; other site
360102002296	Protein of unknown function (DUF2593); Region: DUF2593; pfam10767
360102002297	23S rRNA (uracil-5-)-methyltransferase RumB; Region: meth_trns_rumB; TIGR02085
360102002298	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102002299	S-adenosylmethionine binding site [chemical binding]; other site
360102002300	putative ABC transporter arginine-biding protein; Provisional; Region: PRK15007
360102002301	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102002302	substrate binding pocket [chemical binding]; other site
360102002303	membrane-bound complex binding site; other site
360102002304	hinge residues; other site
360102002305	Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330
360102002306	SPFH domain / Band 7 family; Region: Band_7; pfam01145
360102002307	ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: FepB; COG0614
360102002308	Periplasmic binding protein TroA_f.  These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a...; Region: TroA_f; cd01139
360102002309	putative ligand binding residues [chemical binding]; other site
360102002310	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102002311	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
360102002312	putative PBP binding regions; other site
360102002313	ABC-ATPase subunit  interface; other site
360102002314	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120
360102002315	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
360102002316	Walker A/P-loop; other site
360102002317	ATP binding site [chemical binding]; other site
360102002318	Q-loop/lid; other site
360102002319	ABC transporter signature motif; other site
360102002320	Walker B; other site
360102002321	D-loop; other site
360102002322	H-loop/switch region; other site
360102002323	Nicotianamine synthase protein; Region: NAS; cl17658
360102002324	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4408
360102002325	Uncharacterized protein conserved in bacteria (DUF2338); Region: DUF2338; pfam10100
360102002326	EamA-like transporter family; Region: EamA; pfam00892
360102002327	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
360102002328	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102002329	dimer interface [polypeptide binding]; other site
360102002330	conserved gate region; other site
360102002331	putative PBP binding loops; other site
360102002332	ABC-ATPase subunit interface; other site
360102002333	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
360102002334	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102002335	dimer interface [polypeptide binding]; other site
360102002336	conserved gate region; other site
360102002337	putative PBP binding loops; other site
360102002338	ABC-ATPase subunit interface; other site
360102002339	putative ABC transporter arginine-biding protein; Provisional; Region: PRK15007
360102002340	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102002341	substrate binding pocket [chemical binding]; other site
360102002342	membrane-bound complex binding site; other site
360102002343	hinge residues; other site
360102002344	arginine transporter ATP-binding subunit; Provisional; Region: artP; PRK11124
360102002345	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102002346	Walker A/P-loop; other site
360102002347	ATP binding site [chemical binding]; other site
360102002348	Q-loop/lid; other site
360102002349	ABC transporter signature motif; other site
360102002350	Walker B; other site
360102002351	D-loop; other site
360102002352	H-loop/switch region; other site
360102002353	chorismate mutase; Provisional; Region: PRK08055
360102002354	putative lipoprotein; Provisional; Region: PRK10533
360102002355	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
360102002356	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
360102002357	NAD(P) binding site [chemical binding]; other site
360102002358	active site
360102002359	Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702
360102002360	atypical (a) SDRs, subgroup 2; Region: SDR_a2; cd05245
360102002361	putative NAD(P) binding site [chemical binding]; other site
360102002362	putative active site [active]
360102002363	Protein of unknown function (DUF2867); Region: DUF2867; pfam11066
360102002364	Threonine aldolase [Amino acid transport and metabolism]; Region: GLY1; COG2008
360102002365	Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I).  TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a...; Region: TA_like; cd06502
360102002366	tetramer interface [polypeptide binding]; other site
360102002367	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102002368	catalytic residue [active]
360102002369	pyruvate dehydrogenase; Provisional; Region: PRK09124
360102002370	Pyrimidine (PYR) binding domain of POX; Region: TPP_PYR_POX; cd07039
360102002371	PYR/PP interface [polypeptide binding]; other site
360102002372	dimer interface [polypeptide binding]; other site
360102002373	tetramer interface [polypeptide binding]; other site
360102002374	TPP binding site [chemical binding]; other site
360102002375	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
360102002376	Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates...; Region: TPP_POX; cd02014
360102002377	TPP-binding site [chemical binding]; other site
360102002378	HCP oxidoreductase, NADH-dependent; Provisional; Region: PRK10684
360102002379	Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron...; Region: FNR_iron_sulfur_binding_1; cd06215
360102002380	FAD binding pocket [chemical binding]; other site
360102002381	FAD binding motif [chemical binding]; other site
360102002382	phosphate binding motif [ion binding]; other site
360102002383	beta-alpha-beta structure motif; other site
360102002384	NAD binding pocket [chemical binding]; other site
360102002385	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
360102002386	catalytic loop [active]
360102002387	iron binding site [ion binding]; other site
360102002388	hybrid cluster protein; Provisional; Region: PRK05290
360102002389	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
360102002390	ACS interaction site; other site
360102002391	CODH interaction site; other site
360102002392	Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a...; Region: HCP; cd01914
360102002393	hybrid metal cluster; other site
360102002394	Predicted membrane protein [Function unknown]; Region: COG2431
360102002395	Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]; Region: COG3593
360102002396	Protein of unknown function (DUF2813); Region: DUF2813; pfam11398
360102002397	TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family.  The bacteriophage P2 OLD protein, which has DNase as well as...; Region: TOPRIM_OLD; cd01026
360102002398	putative active site [active]
360102002399	putative metal-binding site [ion binding]; other site
360102002400	Protein of unknown function (DUF535); Region: DUF535; pfam04393
360102002401	macrolide transporter subunit MacA; Provisional; Region: PRK11578
360102002402	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102002403	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102002404	macrolide transporter ATP-binding /permease protein; Provisional; Region: PRK10535
360102002405	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
360102002406	Walker A/P-loop; other site
360102002407	ATP binding site [chemical binding]; other site
360102002408	Q-loop/lid; other site
360102002409	ABC transporter signature motif; other site
360102002410	Walker B; other site
360102002411	D-loop; other site
360102002412	H-loop/switch region; other site
360102002413	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
360102002414	FtsX-like permease family; Region: FtsX; pfam02687
360102002415	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
360102002416	DNA-binding site [nucleotide binding]; DNA binding site
360102002417	RNA-binding motif; other site
360102002418	ATP-dependent Clp protease adaptor protein ClpS; Reviewed; Region: clpS; PRK00033
360102002419	ATP-dependent Clp protease ATP-binding subunit; Provisional; Region: clpA; PRK11034
360102002420	Clp amino terminal domain; Region: Clp_N; pfam02861
360102002421	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102002422	Walker A motif; other site
360102002423	ATP binding site [chemical binding]; other site
360102002424	Walker B motif; other site
360102002425	arginine finger; other site
360102002426	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102002427	Walker A motif; other site
360102002428	ATP binding site [chemical binding]; other site
360102002429	Walker B motif; other site
360102002430	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
360102002431	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102002432	S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451
360102002433	rRNA binding site [nucleotide binding]; other site
360102002434	predicted 30S ribosome binding site; other site
360102002435	leucyl/phenylalanyl-tRNA--protein transferase; Reviewed; Region: aat; PRK00301
360102002436	cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed; Region: PRK11160
360102002437	ATP-binding cassette domain of CydCD, subfamily C; Region: ABCC_cytochrome_bd; cd03247
360102002438	Walker A/P-loop; other site
360102002439	ATP binding site [chemical binding]; other site
360102002440	Q-loop/lid; other site
360102002441	ABC transporter signature motif; other site
360102002442	Walker B; other site
360102002443	D-loop; other site
360102002444	H-loop/switch region; other site
360102002445	cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed; Region: PRK11174
360102002446	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102002447	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102002448	Walker A/P-loop; other site
360102002449	ATP binding site [chemical binding]; other site
360102002450	Q-loop/lid; other site
360102002451	ABC transporter signature motif; other site
360102002452	Walker B; other site
360102002453	D-loop; other site
360102002454	H-loop/switch region; other site
360102002455	thioredoxin reductase; Provisional; Region: PRK10262
360102002456	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
360102002457	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
360102002458	leucine-responsive transcriptional regulator; Provisional; Region: PRK11169
360102002459	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
360102002460	putative DNA binding site [nucleotide binding]; other site
360102002461	putative Zn2+ binding site [ion binding]; other site
360102002462	AsnC family; Region: AsnC_trans_reg; pfam01037
360102002463	Domain of unknown function (DUF4117); Region: DUF4117; pfam13491
360102002464	DNA translocase FtsK; Provisional; Region: PRK10263
360102002465	FtsK/SpoIIIE family; Region: FtsK_SpoIIIE; pfam01580
360102002466	Ftsk gamma domain; Region: Ftsk_gamma; pfam09397
360102002467	Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]; Region: LolA; COG2834
360102002468	Outer membrane lipoprotein carrier protein LolA; Region: LolA; cl17548
360102002469	recombination factor protein RarA; Reviewed; Region: PRK13342
360102002470	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102002471	Walker A motif; other site
360102002472	ATP binding site [chemical binding]; other site
360102002473	Walker B motif; other site
360102002474	arginine finger; other site
360102002475	MgsA AAA+ ATPase C terminal; Region: MgsA_C; pfam12002
360102002476	seryl-tRNA synthetase; Provisional; Region: PRK05431
360102002477	Seryl-tRNA synthetase N-terminal domain; Region: Seryl_tRNA_N; pfam02403
360102002478	Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme...; Region: SerRS_core; cd00770
360102002479	dimer interface [polypeptide binding]; other site
360102002480	active site
360102002481	motif 1; other site
360102002482	motif 2; other site
360102002483	motif 3; other site
360102002484	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102002485	putative substrate translocation pore; other site
360102002486	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102002487	pyruvate formate lyase-activating enzyme 1; Provisional; Region: pflA; PRK11145
360102002488	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102002489	FeS/SAM binding site; other site
360102002490	Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of...; Region: Glyco_transf_25; cd06532
360102002491	formate acetyltransferase 1; Region: pyr_form_ly_1; TIGR01255
360102002492	Pyruvate formate lyase 1; Region: PFL1; cd01678
360102002493	coenzyme A binding site [chemical binding]; other site
360102002494	active site
360102002495	catalytic residues [active]
360102002496	glycine loop; other site
360102002497	formate transporter; Provisional; Region: PRK10805
360102002498	uncharacterized domain; Region: TIGR00702
360102002499	YcaO-like family; Region: YcaO; pfam02624
360102002500	Type II (periplasmic) bacterial L-asparaginase; Region: L-asparaginase_II; cd08964
360102002501	active site
360102002502	homodimer interface [polypeptide binding]; other site
360102002503	homotetramer interface [polypeptide binding]; other site
360102002504	Haemagglutinin; Region: HIM; pfam05662
360102002505	YadA-like C-terminal region; Region: YadA; pfam03895
360102002506	YadA-like C-terminal region; Region: YadA; pfam03895
360102002507	Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT).  PSAT is active as...; Region: PSAT_like; cd00611
360102002508	homodimer interface [polypeptide binding]; other site
360102002509	substrate-cofactor binding pocket; other site
360102002510	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102002511	catalytic residue [active]
360102002512	3-phosphoshikimate 1-carboxyvinyltransferase; Provisional; Region: PRK02427
360102002513	EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form...; Region: EPSP_synthase; cd01556
360102002514	hinge; other site
360102002515	active site
360102002516	cytidylate kinase; Provisional; Region: cmk; PRK00023
360102002517	Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor; Region: CMPK; cd02020
360102002518	CMP-binding site; other site
360102002519	The sites determining sugar specificity; other site
360102002520	30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299
360102002521	S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec1_hs1; cd05687
360102002522	RNA binding site [nucleotide binding]; other site
360102002523	S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec2_hs2; cd04465
360102002524	RNA binding site [nucleotide binding]; other site
360102002525	S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec3; cd05688
360102002526	RNA binding site [nucleotide binding]; other site
360102002527	S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec4; cd05689
360102002528	RNA binding site [nucleotide binding]; other site
360102002529	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
360102002530	RNA binding site [nucleotide binding]; other site
360102002531	S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec6; cd05691
360102002532	RNA binding site [nucleotide binding]; other site
360102002533	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
360102002534	IHF dimer interface [polypeptide binding]; other site
360102002535	IHF - DNA interface [nucleotide binding]; other site
360102002536	ComEC family competence protein; Provisional; Region: PRK11539
360102002537	Domain of unknown function (DUF4131); Region: DUF4131; pfam13567
360102002538	Competence protein; Region: Competence; pfam03772
360102002539	Metallo-beta-lactamase superfamily; Region: Lactamase_B; pfam00753
360102002540	lipid transporter ATP-binding/permease protein; Provisional; Region: PRK11176
360102002541	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102002542	ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; Region: ABCC_MsbA; cd03251
360102002543	Walker A/P-loop; other site
360102002544	ATP binding site [chemical binding]; other site
360102002545	Q-loop/lid; other site
360102002546	ABC transporter signature motif; other site
360102002547	Walker B; other site
360102002548	D-loop; other site
360102002549	H-loop/switch region; other site
360102002550	tetraacyldisaccharide 4'-kinase; Reviewed; Region: lpxK; PRK00652
360102002551	Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]; Region: LpxK; COG1663
360102002552	Domain of unknown function (DUF1338); Region: DUF1338; cl02226
360102002553	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5383
360102002554	transposase/IS protein; Provisional; Region: PRK09183
360102002555	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102002556	Walker A motif; other site
360102002557	ATP binding site [chemical binding]; other site
360102002558	Walker B motif; other site
360102002559	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102002560	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102002561	DNA-binding interface [nucleotide binding]; DNA binding site
360102002562	Integrase core domain; Region: rve; pfam00665
360102002563	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5383
360102002564	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
360102002565	DNA-binding site [nucleotide binding]; DNA binding site
360102002566	RNA-binding motif; other site
360102002567	Trm112p-like protein; Region: Trm112p; cl01066
360102002568	3-deoxy-manno-octulosonate cytidylyltransferase; Provisional; Region: PRK05450
360102002569	CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide; Region: CMP-KDO-Synthetase; cd02517
360102002570	Ligand binding site; other site
360102002571	oligomer interface; other site
360102002572	hypothetical protein; Provisional; Region: PRK10593
360102002573	Methyltransferase domain; Region: Methyltransf_31; pfam13847
360102002574	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102002575	S-adenosylmethionine binding site [chemical binding]; other site
360102002576	condesin subunit F; Provisional; Region: PRK05260
360102002577	condesin subunit E; Provisional; Region: PRK05256
360102002578	Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: MukB; COG3096
360102002579	P-loop containing region of AAA domain; Region: AAA_29; cl17516
360102002580	Putative exonuclease SbcCD, C subunit; Region: SbcCD_C; pfam13558
360102002581	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102002582	murein L,D-transpeptidase; Provisional; Region: PRK10594
360102002583	Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471
360102002584	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
360102002585	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
360102002586	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3108
360102002587	Peptidase M15; Region: Peptidase_M15_3; cl01194
360102002588	Zn-dependent hydrolases, including glyoxylases [General function prediction only]; Region: GloB; COG0491
360102002589	aromatic amino acid aminotransferase; Provisional; Region: PRK09257
360102002590	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
360102002591	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102002592	homodimer interface [polypeptide binding]; other site
360102002593	catalytic residue [active]
360102002594	Porin superfamily.  These outer membrane channels share a beta-barrel structure that differ in strand and shear number.  Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl17244
360102002595	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
360102002596	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
360102002597	Porin superfamily.  These outer membrane channels share a beta-barrel structure that differ in strand and shear number.  Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl17244
360102002598	asparaginyl-tRNA synthetase; Validated; Region: asnC; PRK03932
360102002599	EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB...; Region: EcAsnRS_like_N; cd04318
360102002600	putative dimer interface [polypeptide binding]; other site
360102002601	putative anticodon binding site; other site
360102002602	Asx tRNA synthetase (AspRS/AsnRS) class II core domain.  Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as...; Region: AsxRS_core; cd00776
360102002603	homodimer interface [polypeptide binding]; other site
360102002604	motif 1; other site
360102002605	motif 2; other site
360102002606	active site
360102002607	motif 3; other site
360102002608	nicotinate phosphoribosyltransferase; Region: NAPRTase; TIGR01514
360102002609	Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting; Region: PncB_like; cd01401
360102002610	active site
360102002611	aminopeptidase N; Provisional; Region: pepN; PRK14015
360102002612	Peptidase M1 family containing Aminopeptidase N; Region: M1_APN_1; cd09600
360102002613	active site
360102002614	Zn binding site [ion binding]; other site
360102002615	dihydroorotate dehydrogenase 2; Reviewed; Region: PRK05286
360102002616	Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires...; Region: DHOD_2_like; cd04738
360102002617	quinone interaction residues [chemical binding]; other site
360102002618	active site
360102002619	catalytic residues [active]
360102002620	FMN binding site [chemical binding]; other site
360102002621	substrate binding site [chemical binding]; other site
360102002622	Protein of unknown function (DUF1379); Region: DUF1379; pfam07126
360102002623	Uncharacterized Fe-S protein [General function prediction only]; Region: COG3217
360102002624	MOSC N-terminal beta barrel domain; Region: MOSC_N; pfam03476
360102002625	MOSC domain; Region: MOSC; pfam03473
360102002626	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
360102002627	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
360102002628	catalytic loop [active]
360102002629	iron binding site [ion binding]; other site
360102002630	23S rRNA m(2)G2445 methyltransferase; Provisional; Region: rlmL; PRK11783
360102002631	THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Region: THUMP_AdoMetMT; cd11715
360102002632	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102002633	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102002634	S-adenosylmethionine binding site [chemical binding]; other site
360102002635	ABC transporter ATPase component; Reviewed; Region: PRK11147
360102002636	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102002637	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102002638	Walker A/P-loop; other site
360102002639	Walker A/P-loop; other site
360102002640	ATP binding site [chemical binding]; other site
360102002641	ATP binding site [chemical binding]; other site
360102002642	Q-loop/lid; other site
360102002643	Q-loop/lid; other site
360102002644	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
360102002645	ABC transporter signature motif; other site
360102002646	Walker B; other site
360102002647	D-loop; other site
360102002648	ABC transporter; Region: ABC_tran_2; pfam12848
360102002649	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
360102002650	paraquat-inducible membrane protein A; Provisional; Region: PRK15103
360102002651	Paraquat-inducible protein A; Region: PqiA; pfam04403
360102002652	Paraquat-inducible protein A; Region: PqiA; pfam04403
360102002653	paraquat-inducible protein B; Provisional; Region: PRK10807
360102002654	mce related protein; Region: MCE; pfam02470
360102002655	mce related protein; Region: MCE; pfam02470
360102002656	mce related protein; Region: MCE; pfam02470
360102002657	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3009
360102002658	Protein of unknown function (DUF330); Region: DUF330; pfam03886
360102002659	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102002660	3-oxoacyl-(acyl carrier protein) synthase II; Provisional; Region: PRK14691
360102002661	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
360102002662	dimer interface [polypeptide binding]; other site
360102002663	active site
360102002664	transposase/IS protein; Provisional; Region: PRK09183
360102002665	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102002666	Walker A motif; other site
360102002667	ATP binding site [chemical binding]; other site
360102002668	Walker B motif; other site
360102002669	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102002670	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102002671	DNA-binding interface [nucleotide binding]; DNA binding site
360102002672	Integrase core domain; Region: rve; pfam00665
360102002673	Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the...; Region: cond_enzymes; cl09938
360102002674	FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA...; Region: FabA; cd01287
360102002675	active site 2 [active]
360102002676	dimer interface [polypeptide binding]; other site
360102002677	active site 1 [active]
360102002678	Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]; Region: LonB; COG1067
360102002679	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
360102002680	Ter macrodomain organizer matS-binding protein; Provisional; Region: PRK05097
360102002681	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102002682	outer membrane protein A; Reviewed; Region: PRK10808
360102002683	OmpA-like transmembrane domain; Region: OmpA_membrane; pfam01389
360102002684	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
360102002685	ligand binding site [chemical binding]; other site
360102002686	SOS-response cell division inhibitor, blocks FtsZ ring formation [Cell division and chromosome partitioning]; Region: SulA; COG5404
360102002687	Regulator of competence-specific genes [Transcription]; Region: TfoX; COG3070
360102002688	TfoX C-terminal domain; Region: TfoX_C; pfam04994
360102002689	TIGR01666 family membrane protein; Region: YCCS
360102002690	FUSC-like inner membrane protein yccS; Region: FUSC-like; pfam12805
360102002691	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
360102002692	Predicted membrane protein [Function unknown]; Region: COG3304
360102002693	Domain of unknown function (DUF307); Region: DUF307; pfam03733
360102002694	DNA helicase IV; Provisional; Region: helD; PRK11054
360102002695	DNA helicase IV / RNA helicase N terminal; Region: Nucleolin_N; pfam12462
360102002696	Part of AAA domain; Region: AAA_19; pfam13245
360102002697	Family description; Region: UvrD_C_2; pfam13538
360102002698	Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to...; Region: MGS; cd01422
360102002699	active site
360102002700	dimer interfaces [polypeptide binding]; other site
360102002701	catalytic residues [active]
360102002702	hypothetical protein; Provisional; Region: PRK03641
360102002703	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3110
360102002704	Predicted CoA-binding protein [General function prediction only]; Region: COG1832
360102002705	heat shock protein HspQ; Provisional; Region: PRK14129
360102002706	23S rRNA m(5)C1962 methyltransferase; Provisional; Region: PRK15128
360102002707	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase; Region: PUA; smart00359
360102002708	Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; Region: RlmI_M_like; cd11572
360102002709	putative RNA binding site [nucleotide binding]; other site
360102002710	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102002711	S-adenosylmethionine binding site [chemical binding]; other site
360102002712	acylphosphatase; Provisional; Region: PRK14426
360102002713	Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]; Region: DsrC; COG2920
360102002714	sulfur relay protein, TusE/DsrC/DsvC family; Region: dsrC_tusE_dsvC; TIGR03342
360102002715	Integrase core domain; Region: rve; pfam00665
360102002716	Acetyltransferase (GNAT) domain; Region: Acetyltransf_6; pfam13480
360102002717	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
360102002718	FAD binding domain; Region: FAD_binding_4; pfam01565
360102002719	short chain dehydrogenase; Provisional; Region: PRK06172
360102002720	classical (c) SDRs; Region: SDR_c; cd05233
360102002721	NAD(P) binding site [chemical binding]; other site
360102002722	active site
360102002723	FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation; Region: FabA_FabZ; cd00493
360102002724	active site 2 [active]
360102002725	dimer interface [polypeptide binding]; other site
360102002726	active site 1 [active]
360102002727	3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: FabB; COG0304
360102002728	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
360102002729	dimer interface [polypeptide binding]; other site
360102002730	active site
360102002731	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653
360102002732	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
360102002733	NAD(P) binding site [chemical binding]; other site
360102002734	active site
360102002735	3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]; Region: PksG; COG3425
360102002736	"initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are...; Region: init_cond_enzymes; cd00827
360102002737	dimer interface [polypeptide binding]; other site
360102002738	active site
360102002739	Enoyl-CoA hydratase/isomerase family; Region: ECH; pfam00378
360102002740	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
360102002741	substrate binding site [chemical binding]; other site
360102002742	oxyanion hole (OAH) forming residues; other site
360102002743	trimer interface [polypeptide binding]; other site
360102002744	Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]; Region: CaiD; COG1024
360102002745	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
360102002746	substrate binding site [chemical binding]; other site
360102002747	oxyanion hole (OAH) forming residues; other site
360102002748	trimer interface [polypeptide binding]; other site
360102002749	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: FabG; COG1028
360102002750	classical (c) SDRs; Region: SDR_c; cd05233
360102002751	NAD(P) binding site [chemical binding]; other site
360102002752	active site
360102002753	Lipocalin-like domain; Region: Lipocalin_5; pfam13924
360102002754	acyl carrier protein; Validated; Region: PRK07117
360102002755	(acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Region: FabD; COG0331
360102002756	malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128
360102002757	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102002758	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102002759	DNA-binding interface [nucleotide binding]; DNA binding site
360102002760	Integrase core domain; Region: rve; pfam00665
360102002761	transposase/IS protein; Provisional; Region: PRK09183
360102002762	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102002763	Walker A motif; other site
360102002764	ATP binding site [chemical binding]; other site
360102002765	Walker B motif; other site
360102002766	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3516
360102002767	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3517
360102002768	Protein of unknown function (DUF877); Region: DUF877; pfam05943
360102002769	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3522
360102002770	Bacterial protein of unknown function (DUF876); Region: DUF876; pfam05936
360102002771	Type VI protein secretion system component VasF [Intracellular    trafficking, secretion, and vesicular transport]; Region: COG3455
360102002772	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
360102002773	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
360102002774	ligand binding site [chemical binding]; other site
360102002775	type VI secretion system effector, Hcp1 family; Region: VI_effect_Hcp1; TIGR03344
360102002776	type VI secretion ATPase, ClpV1 family; Region: VI_ClpV1; TIGR03345
360102002777	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102002778	Walker A motif; other site
360102002779	ATP binding site [chemical binding]; other site
360102002780	Walker B motif; other site
360102002781	arginine finger; other site
360102002782	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102002783	Walker A motif; other site
360102002784	ATP binding site [chemical binding]; other site
360102002785	Walker B motif; other site
360102002786	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
360102002787	Rhs element Vgr protein; Region: vgr_GE; TIGR01646
360102002788	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
360102002789	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
360102002790	Putative type VI secretion system Rhs element Vgr; Region: T6SS_Vgr; pfam13296
360102002791	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4253
360102002792	Peptidase family M23; Region: Peptidase_M23; pfam01551
360102002793	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4253
360102002794	Peptidase family M23; Region: Peptidase_M23; pfam01551
360102002795	Winged helix-turn helix; Region: HTH_33; pfam13592
360102002796	Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and    vesicular transport]; Region: IcmF; COG3523
360102002797	Intracellular multiplication and human macrophage-killing; Region: IcmF-related; pfam06761
360102002798	Protein of unknown function (DUF1215); Region: DUF1215; pfam06744
360102002799	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3515
360102002800	ImpA-related N-terminal; Region: ImpA-rel_N; pfam06812
360102002801	type VI secretion-associated protein, VC_A0119 family; Region: VI_chp_7; TIGR03362
360102002802	type VI secretion-associated protein, VC_A0119 family; Region: VI_chp_7; TIGR03362
360102002803	PAAR motif; Region: PAAR_motif; pfam05488
360102002804	Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3519
360102002805	Bacterial protein of unknown function (DUF879); Region: DUF879; pfam05947
360102002806	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3520
360102002807	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3521
360102002808	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3518
360102002809	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3515
360102002810	ImpA-related N-terminal; Region: ImpA-rel_N; pfam06812
360102002811	ImpA domain protein; Region: DUF3702; pfam12486
360102002812	START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; Region: SRPBCC; cl14643
360102002813	ABC transporter ATP-binding protein; Provisional; Region: PRK15064
360102002814	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102002815	Walker A/P-loop; other site
360102002816	ATP binding site [chemical binding]; other site
360102002817	Q-loop/lid; other site
360102002818	ABC transporter signature motif; other site
360102002819	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
360102002820	Walker B; other site
360102002821	D-loop; other site
360102002822	H-loop/switch region; other site
360102002823	ABC transporter; Region: ABC_tran_2; pfam12848
360102002824	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
360102002825	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102002826	MULE transposase domain; Region: MULE; pfam10551
360102002827	molybdopterin biosynthesis protein MoeB; Provisional; Region: PRK05690
360102002828	ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD...; Region: ThiF_MoeB_HesA_family; cd00757
360102002829	ATP binding site [chemical binding]; other site
360102002830	substrate interface [chemical binding]; other site
360102002831	molybdopterin biosynthesis protein MoeA; Provisional; Region: PRK10680
360102002832	MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoeA; cd00887
360102002833	dimer interface [polypeptide binding]; other site
360102002834	putative functional site; other site
360102002835	putative MPT binding site; other site
360102002836	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102002837	Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]; Region: AslB; COG0641
360102002838	FeS/SAM binding site; other site
360102002839	radical SAM additional 4Fe4S-binding SPASM domain; Region: rSAM_more_4Fe4S; TIGR04085
360102002840	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
360102002841	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
360102002842	Walker A/P-loop; other site
360102002843	ATP binding site [chemical binding]; other site
360102002844	Q-loop/lid; other site
360102002845	ABC transporter signature motif; other site
360102002846	Walker B; other site
360102002847	D-loop; other site
360102002848	H-loop/switch region; other site
360102002849	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
360102002850	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102002851	S-formylglutathione hydrolase; Region: PLN02442
360102002852	S-formylglutathione hydrolase; Region: fghA_ester_D; TIGR02821
360102002853	class III alcohol dehydrogenases; Region: alcohol_DH_class_III; cd08300
360102002854	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Region: adh_III_F_hyde; TIGR02818
360102002855	substrate binding site [chemical binding]; other site
360102002856	catalytic Zn binding site [ion binding]; other site
360102002857	NAD binding site [chemical binding]; other site
360102002858	structural Zn binding site [ion binding]; other site
360102002859	dimer interface [polypeptide binding]; other site
360102002860	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102002861	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102002862	The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold; Region: PBP2_YofA_SoxR_like; cd08442
360102002863	putative dimerization interface [polypeptide binding]; other site
360102002864	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102002865	putative substrate translocation pore; other site
360102002866	GTP cyclohydrolase I; Provisional; Region: folE; PRK09347
360102002867	GTP cyclohydrolase I; Provisional; Region: PLN03044
360102002868	active site
360102002869	Predicted membrane protein [Function unknown]; Region: COG2311
360102002870	hypothetical protein; Provisional; Region: PRK10835
360102002871	methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional; Region: PRK15395
360102002872	Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species; Region: PBP1_GGBP; cd01539
360102002873	ligand binding site [chemical binding]; other site
360102002874	calcium binding site [ion binding]; other site
360102002875	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102002876	galactose/methyl galaxtoside transporter ATP-binding protein; Provisional; Region: PRK10982
360102002877	Walker A/P-loop; other site
360102002878	ATP binding site [chemical binding]; other site
360102002879	Q-loop/lid; other site
360102002880	ABC transporter signature motif; other site
360102002881	Walker B; other site
360102002882	D-loop; other site
360102002883	H-loop/switch region; other site
360102002884	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102002885	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102002886	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102002887	TM-ABC transporter signature motif; other site
360102002888	YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been...; Region: YdcF-like; cd06259
360102002889	putative active site [active]
360102002890	malate dehydrogenase; Provisional; Region: PRK13529
360102002891	Malic enzyme, N-terminal domain; Region: malic; pfam00390
360102002892	NAD(P) binding domain of malic enzyme (ME), subgroup 1; Region: NAD_bind_1_malic_enz; cd05312
360102002893	NAD(P) binding site [chemical binding]; other site
360102002894	cytidine deaminase; Provisional; Region: PRK09027
360102002895	Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on...; Region: cytidine_deaminase; cd01283
360102002896	active site
360102002897	catalytic motif [active]
360102002898	Zn binding site [ion binding]; other site
360102002899	Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on...; Region: cytidine_deaminase; cd01283
360102002900	active site
360102002901	catalytic motif [active]
360102002902	Zn binding site [ion binding]; other site
360102002903	hypothetical protein; Provisional; Region: PRK10711
360102002904	hypothetical protein; Provisional; Region: PRK01821
360102002905	putative transporter; Provisional; Region: PRK10054
360102002906	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102002907	putative substrate translocation pore; other site
360102002908	Uncharacterized conserved protein [Function unknown]; Region: COG5276
360102002909	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879
360102002910	Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily; Region: PBP1_methylthioribose_binding_like; cd06305
360102002911	putative ligand binding site [chemical binding]; other site
360102002912	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102002913	methionyl-tRNA synthetase; Reviewed; Region: metG; PRK00133
360102002914	catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814
360102002915	active site
360102002916	HIGH motif; other site
360102002917	KMSKS motif; other site
360102002918	Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957
360102002919	tRNA binding surface [nucleotide binding]; other site
360102002920	anticodon binding site; other site
360102002921	tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins.  This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties.  MetRS aminoacylates methionine...; Region: tRNA_bind_EcMetRS_like; cd02800
360102002922	dimer interface [polypeptide binding]; other site
360102002923	putative tRNA-binding site [nucleotide binding]; other site
360102002924	antiporter inner membrane protein; Provisional; Region: PRK11670
360102002925	MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions...; Region: MRP-like; cd02037
360102002926	Uridine kinase [Nucleotide transport and metabolism]; Region: Udk; COG0572
360102002927	Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway; Region: UMPK; cd02023
360102002928	ATP-binding site [chemical binding]; other site
360102002929	Sugar specificity; other site
360102002930	Pyrimidine base specificity; other site
360102002931	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
360102002932	trimer interface [polypeptide binding]; other site
360102002933	active site
360102002934	putative assembly protein; Provisional; Region: PRK10833
360102002935	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
360102002936	Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]; Region: TerC; COG0861
360102002937	magnesium/cobalt efflux protein CorC; Provisional; Region: PRK15094
360102002938	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
360102002939	Transporter associated domain; Region: CorC_HlyC; smart01091
360102002940	ferric iron reductase involved in ferric hydroximate transport; Provisional; Region: PRK10647
360102002941	Ferric iron reductase FhuF-like transporter; Region: FhuF; pfam06276
360102002942	FhuF 2Fe-2S C-terminal domain; Region: FhuF_C; pfam11575
360102002943	DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and...; Region: DOPA_deC_like; cd06450
360102002944	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102002945	catalytic residue [active]
360102002946	Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: IucD; COG3486
360102002947	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
360102002948	Acetyltransferase (GNAT) domain; Region: Acetyltransf_8; pfam13523
360102002949	Siderophore biosynthesis protein domain; Region: AlcB; smart01006
360102002950	Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: RhbC; COG4264
360102002951	IucA / IucC family; Region: IucA_IucC; pfam04183
360102002952	Ferric iron reductase FhuF-like transporter; Region: FhuF; pfam06276
360102002953	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120
360102002954	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
360102002955	Walker A/P-loop; other site
360102002956	ATP binding site [chemical binding]; other site
360102002957	Q-loop/lid; other site
360102002958	ABC transporter signature motif; other site
360102002959	Walker B; other site
360102002960	D-loop; other site
360102002961	H-loop/switch region; other site
360102002962	RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169
360102002963	ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism]; Region: FepG; COG4779
360102002964	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102002965	ABC-ATPase subunit  interface; other site
360102002966	dimer interface [polypeptide binding]; other site
360102002967	putative PBP binding regions; other site
360102002968	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
360102002969	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102002970	ABC-ATPase subunit  interface; other site
360102002971	dimer interface [polypeptide binding]; other site
360102002972	putative PBP binding regions; other site
360102002973	ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: FepB; COG0614
360102002974	Fe3+-siderophore binding domain FhuD.  These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins...; Region: FhuD; cd01146
360102002975	siderophore binding site; other site
360102002976	Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]; Region: FhuE; COG4773
360102002977	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102002978	N-terminal plug; other site
360102002979	ligand-binding site [chemical binding]; other site
360102002980	IucA / IucC family; Region: IucA_IucC; pfam04183
360102002981	Ferric iron reductase FhuF-like transporter; Region: FhuF; pfam06276
360102002982	IucA / IucC family; Region: IucA_IucC; pfam04183
360102002983	Prokaryotic UGPase catalyses the synthesis of UDP-glucose; Region: UGPase_prokaryotic; cd02541
360102002984	active site
360102002985	tetramer interface; other site
360102002986	Prokaryotic UGPase catalyses the synthesis of UDP-glucose; Region: UGPase_prokaryotic; cd02541
360102002987	active site
360102002988	tetramer interface; other site
360102002989	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
360102002990	6-phosphogluconate dehydrogenase; Validated; Region: PRK09287
360102002991	6-phosphogluconate dehydrogenase, C-terminal domain; Region: 6PGD; pfam00393
360102002992	Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]; Region: HisI; COG0139
360102002993	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed; Region: PRK02759
360102002994	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in Escherichia coli phosphoribosyl-ATP pyrophosphohydrolase (HisIE or PRATP-PH) and its homologs; Region: NTP-PPase_HisIE_like; cd11534
360102002995	metal binding site [ion binding]; metal-binding site
360102002996	The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731
360102002997	Histidine biosynthesis protein; Region: His_biosynth; pfam00977
360102002998	substrate binding site [chemical binding]; other site
360102002999	glutamase interaction surface [polypeptide binding]; other site
360102003000	HisA.  Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1...; Region: HisA; cd04732
360102003001	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; Region: TIGR00007
360102003002	catalytic residues [active]
360102003003	imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13170
360102003004	Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Region: GATase1_IGP_Synthase; cd01748
360102003005	putative active site [active]
360102003006	oxyanion strand; other site
360102003007	catalytic triad [active]
360102003008	imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional; Region: PRK05446
360102003009	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102003010	active site
360102003011	motif I; other site
360102003012	motif II; other site
360102003013	Imidazoleglycerol-phosphate dehydratase; Region: IGPD; cd07914
360102003014	putative active site pocket [active]
360102003015	4-fold oligomerization interface [polypeptide binding]; other site
360102003016	metal binding residues [ion binding]; metal-binding site
360102003017	3-fold/trimer interface [polypeptide binding]; other site
360102003018	histidinol-phosphate aminotransferase; Provisional; Region: PRK01688
360102003019	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
360102003020	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102003021	homodimer interface [polypeptide binding]; other site
360102003022	catalytic residue [active]
360102003023	Histidinol dehydrogenase [Amino acid transport and metabolism]; Region: HisD; COG0141
360102003024	Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent...; Region: Histidinol_dh; cd06572
360102003025	NAD binding site [chemical binding]; other site
360102003026	dimerization interface [polypeptide binding]; other site
360102003027	product binding site; other site
360102003028	substrate binding site [chemical binding]; other site
360102003029	zinc binding site [ion binding]; other site
360102003030	catalytic residues [active]
360102003031	ATP phosphoribosyltransferase; Reviewed; Region: hisG; PRK00489
360102003032	ATP phosphoribosyltransferase; Region: hisG; TIGR00070
360102003033	ATP phosphoribosyltransferase, C-terminal domain; Region: HisG_C-term; TIGR03455
360102003034	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
360102003035	atypical (a) SDRs, subgroup 4; Region: SDR_a4; cd05266
360102003036	putative NAD(P) binding site [chemical binding]; other site
360102003037	Yersinia protein of unknown function (DUF3831); Region: DUF3831; pfam12908
360102003038	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102003039	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102003040	TM-ABC transporter signature motif; other site
360102003041	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102003042	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
360102003043	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411
360102003044	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102003045	Walker A/P-loop; other site
360102003046	ATP binding site [chemical binding]; other site
360102003047	Q-loop/lid; other site
360102003048	ABC transporter signature motif; other site
360102003049	Walker B; other site
360102003050	D-loop; other site
360102003051	H-loop/switch region; other site
360102003052	Glycerol dehydrogenase and related enzymes [Energy production and conversion]; Region: GldA; COG0371
360102003053	Glycerol dehydrogenases-like; Region: GlyDH-like1; cd08172
360102003054	putative active site [active]
360102003055	metal binding site [ion binding]; metal-binding site
360102003056	Amino acid transporters [Amino acid transport and metabolism]; Region: PotE; COG0531
360102003057	exonuclease I; Provisional; Region: sbcB; PRK11779
360102003058	N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins; Region: ExoI_N; cd06138
360102003059	active site
360102003060	catalytic site [active]
360102003061	substrate binding site [chemical binding]; other site
360102003062	Exonuclease C-terminal; Region: Exonuc_X-T_C; pfam08411
360102003063	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
360102003064	NAD(P) binding site [chemical binding]; other site
360102003065	active site
360102003066	hypothetical protein; Provisional; Region: PRK05423
360102003067	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102003068	MULE transposase domain; Region: MULE; pfam10551
360102003069	Protein of unknown function (DUF3442); Region: DUF3442; pfam11924
360102003070	Bacterial Ig-like domain (group 1); Region: BID_1; smart00634
360102003071	Bacterial Ig-like domain (group 1); Region: BID_1; smart00634
360102003072	Bacterial Ig-like domain (group 1); Region: BID_1; smart00634
360102003073	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
360102003074	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102003075	putative substrate translocation pore; other site
360102003076	Predicted thiol-disulfide oxidoreductase [General function    prediction only]; Region: COG3011
360102003077	3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed; Region: PRK12826
360102003078	human DHRS6-like, classical (c) SDRs; Region: DHRS6_like_SDR_c; cd05368
360102003079	NAD binding site [chemical binding]; other site
360102003080	homotetramer interface [polypeptide binding]; other site
360102003081	homodimer interface [polypeptide binding]; other site
360102003082	active site
360102003083	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179
360102003084	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
360102003085	Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to...; Region: rTSbeta_L-fuconate_dehydratase; cd03324
360102003086	L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]; Region: COG4948
360102003087	putative active site pocket [active]
360102003088	metal binding site [ion binding]; metal-binding site
360102003089	L-lactate dehydrogenase; Provisional; Region: lldD; PRK11197
360102003090	TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl17186
360102003091	phosphate binding site [ion binding]; other site
360102003092	Arginosuccinate synthase; Region: Arginosuc_synth; cl17227
360102003093	Arginosuccinate synthase; Region: Arginosuc_synth; cl17227
360102003094	MATE family multidrug exporter; Provisional; Region: PRK10189
360102003095	Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM; Region: MATE_NorM_like; cd13137
360102003096	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102003097	Major Facilitator Superfamily; Region: MFS_1; pfam07690
360102003098	putative substrate translocation pore; other site
360102003099	Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins; Region: CE4_HpPgdA_like; cd10938
360102003100	active site
360102003101	catalytic site [active]
360102003102	Zn binding site [ion binding]; other site
360102003103	tetramer interface [polypeptide binding]; other site
360102003104	Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Region: CDA1; COG0726
360102003105	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3122
360102003106	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
360102003107	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102003108	active site
360102003109	phosphorylation site [posttranslational modification]
360102003110	intermolecular recognition site; other site
360102003111	dimerization interface [polypeptide binding]; other site
360102003112	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102003113	DNA binding residues [nucleotide binding]
360102003114	dimerization interface [polypeptide binding]; other site
360102003115	DctM-like transporters; Region: DctM; pfam06808
360102003116	TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]; Region: DctQ; COG1593
360102003117	TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]; Region: DctM; COG3090
360102003118	TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: DctP; COG1638
360102003119	Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; pfam03480
360102003120	Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntD; COG2977
360102003121	4'-phosphopantetheinyl transferase superfamily; Region: ACPS; pfam01648
360102003122	Alpha-galactosidase [Carbohydrate transport and metabolism]; Region: GalA; COG3345
360102003123	Melibiase; Region: Melibiase; pfam02065
360102003124	galactoside permease; Reviewed; Region: lacY; PRK09528
360102003125	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102003126	putative substrate translocation pore; other site
360102003127	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102003128	MULE transposase domain; Region: MULE; pfam10551
360102003129	Transposase; Region: DEDD_Tnp_IS110; pfam01548
360102003130	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
360102003131	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl17251
360102003132	putative Mg++ binding site [ion binding]; other site
360102003133	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102003134	nucleotide binding region [chemical binding]; other site
360102003135	ATP-binding site [chemical binding]; other site
360102003136	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102003137	Uncharacterized conserved protein [Function unknown]; Region: COG3595
360102003138	Domain of unknown function (DUF4098); Region: DUF4098; pfam13345
360102003139	tRNA-dihydrouridine synthase C; Provisional; Region: PRK10550
360102003140	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
360102003141	FMN binding site [chemical binding]; other site
360102003142	active site
360102003143	catalytic residues [active]
360102003144	substrate binding site [chemical binding]; other site
360102003145	D-alanyl-D-alanine endopeptidase; Provisional; Region: pbpG; PRK11669
360102003146	D-alanyl-D-alanine carboxypeptidase; Region: Peptidase_S11; pfam00768
360102003147	D-lactate dehydrogenase; Provisional; Region: PRK11183
360102003148	FAD binding domain; Region: FAD_binding_4; pfam01565
360102003149	D-lactate dehydrogenase, membrane binding; Region: Lact-deh-memb; pfam09330
360102003150	Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily; Region: CYTH-like_AC_IV-like; cd07890
360102003151	putative active site [active]
360102003152	putative metal binding residues [ion binding]; other site
360102003153	signature motif; other site
360102003154	putative triphosphate binding site [ion binding]; other site
360102003155	dimer interface [polypeptide binding]; other site
360102003156	HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
360102003157	active site
360102003158	Suppressor of fused protein (SUFU); Region: SUFU; pfam05076
360102003159	hypothetical protein; Provisional; Region: PRK10457
360102003160	ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: COG3638
360102003161	ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Region: ABC_PhnC_transporter; cd03256
360102003162	Walker A/P-loop; other site
360102003163	ATP binding site [chemical binding]; other site
360102003164	Q-loop/lid; other site
360102003165	ABC transporter signature motif; other site
360102003166	Walker B; other site
360102003167	D-loop; other site
360102003168	H-loop/switch region; other site
360102003169	phosphonate ABC transporter, periplasmic phosphonate binding protein; Region: PhnD; TIGR03431
360102003170	TRAP transporter solute receptor, TAXI family; Region: TRAP_TAXI; TIGR02122
360102003171	Transferrin; Region: Transferrin; cl02460
360102003172	phosphonate ABC transporter, permease protein PhnE; Region: PhnE; TIGR01097
360102003173	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102003174	dimer interface [polypeptide binding]; other site
360102003175	conserved gate region; other site
360102003176	putative PBP binding loops; other site
360102003177	ABC-ATPase subunit interface; other site
360102003178	phosphonate ABC transporter, permease protein PhnE; Region: PhnE; TIGR01097
360102003179	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102003180	dimer interface [polypeptide binding]; other site
360102003181	conserved gate region; other site
360102003182	putative PBP binding loops; other site
360102003183	ABC-ATPase subunit interface; other site
360102003184	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4807
360102003185	Protein of unknown function (DUF1456); Region: DUF1456; pfam07308
360102003186	Protein of unknown function (DUF1456); Region: DUF1456; pfam07308
360102003187	Periplasmic binding protein; Region: Peripla_BP_6; pfam13458
360102003188	Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); Region: PBP1_FmdD_like; cd06355
360102003189	putative ligand binding site [chemical binding]; other site
360102003190	HEAT repeats; Region: HEAT_2; pfam13646
360102003191	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
360102003192	TM-ABC transporter signature motif; other site
360102003193	ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]; Region: LivM; COG4177
360102003194	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
360102003195	TM-ABC transporter signature motif; other site
360102003196	Uncharacterized ABC-type transport system, ATPase component [General function prediction only]; Region: COG4674
360102003197	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
360102003198	Walker A/P-loop; other site
360102003199	ATP binding site [chemical binding]; other site
360102003200	Q-loop/lid; other site
360102003201	ABC transporter signature motif; other site
360102003202	Walker B; other site
360102003203	D-loop; other site
360102003204	H-loop/switch region; other site
360102003205	urea ABC transporter, ATP-binding protein UrtE; Region: urea_trans_UrtE; TIGR03410
360102003206	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
360102003207	Walker A/P-loop; other site
360102003208	ATP binding site [chemical binding]; other site
360102003209	Q-loop/lid; other site
360102003210	ABC transporter signature motif; other site
360102003211	Walker B; other site
360102003212	D-loop; other site
360102003213	H-loop/switch region; other site
360102003214	2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy_3; cl17304
360102003215	tyrosine decarboxylase; Region: PLN02880
360102003216	Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]; Region: GadB; COG0076
360102003217	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102003218	catalytic residue [active]
360102003219	3-mercaptopyruvate sulfurtransferase; Provisional; Region: sseA; PRK11493
360102003220	Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it...; Region: TST_Repeat_1; cd01448
360102003221	active site residue [active]
360102003222	Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue; Region: TST_Repeat_2; cd01449
360102003223	active site residue [active]
360102003224	Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]; Region: OpuBC; COG1732
360102003225	Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]; Region: OpuBC; COG1732
360102003226	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102003227	dimer interface [polypeptide binding]; other site
360102003228	conserved gate region; other site
360102003229	ABC-ATPase subunit interface; other site
360102003230	ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]; Region: OpuBA; COG1125
360102003231	ATP-binding cassette domain of the osmoprotectant transporter; Region: ABC_OpuCA_Osmoprotection; cd03295
360102003232	Walker A/P-loop; other site
360102003233	ATP binding site [chemical binding]; other site
360102003234	Q-loop/lid; other site
360102003235	ABC transporter signature motif; other site
360102003236	Walker B; other site
360102003237	D-loop; other site
360102003238	H-loop/switch region; other site
360102003239	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cl15354
360102003240	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102003241	putative PBP binding loops; other site
360102003242	dimer interface [polypeptide binding]; other site
360102003243	ABC-ATPase subunit interface; other site
360102003244	arginine:agmatin antiporter; Provisional; Region: PRK10644
360102003245	Spore germination protein; Region: Spore_permease; cl17796
360102003246	arginine decarboxylase; Provisional; Region: PRK15029
360102003247	Orn/Lys/Arg decarboxylase, N-terminal domain; Region: OKR_DC_1_N; pfam03709
360102003248	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
360102003249	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102003250	catalytic residue [active]
360102003251	Orn/Lys/Arg decarboxylase, C-terminal domain; Region: OKR_DC_1_C; pfam03711
360102003252	putative DMT superfamily transporter inner membrane protein; Provisional; Region: PRK11272
360102003253	EamA-like transporter family; Region: EamA; pfam00892
360102003254	EamA-like transporter family; Region: EamA; pfam00892
360102003255	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102003256	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102003257	DNA-binding interface [nucleotide binding]; DNA binding site
360102003258	Integrase core domain; Region: rve; pfam00665
360102003259	transposase/IS protein; Provisional; Region: PRK09183
360102003260	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102003261	Walker A motif; other site
360102003262	ATP binding site [chemical binding]; other site
360102003263	Walker B motif; other site
360102003264	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
360102003265	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
360102003266	trimer interface [polypeptide binding]; other site
360102003267	eyelet of channel; other site
360102003268	ATP-dependent DNA helicase DinG; Provisional; Region: dinG; PRK11747
360102003269	DEAD_2; Region: DEAD_2; pfam06733
360102003270	Helicase C-terminal domain; Region: Helicase_C_2; pfam13307
360102003271	Catalase [Inorganic ion transport and metabolism]; Region: KatE; COG0753
360102003272	Clade 3 of the heme-binding enzyme catalase; Region: catalase_clade_3; cd08156
360102003273	tetramer interface [polypeptide binding]; other site
360102003274	heme binding pocket [chemical binding]; other site
360102003275	NADPH binding site [chemical binding]; other site
360102003276	YfaZ precursor; Region: YfaZ; pfam07437
360102003277	outer membrane protein; Region: OMP_w_GlyGly; TIGR04219
360102003278	tyrosine transporter TyrP; Provisional; Region: PRK15132
360102003279	aromatic amino acid transport protein; Region: araaP; TIGR00837
360102003280	hypothetical protein; Provisional; Region: PRK03673
360102003281	Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of...; Region: cinA; cd00885
360102003282	putative MPT binding site; other site
360102003283	Competence-damaged protein; Region: CinA; cl00666
360102003284	Protease Inhibitor Ecotin; homodimeric protease inhibitor; Region: Ecotin; cd00242
360102003285	secondary substrate binding site; other site
360102003286	primary substrate binding site; other site
360102003287	inhibition loop; other site
360102003288	dimerization interface [polypeptide binding]; other site
360102003289	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
360102003290	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
360102003291	catalytic loop [active]
360102003292	iron binding site [ion binding]; other site
360102003293	Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; Region: RNRR2; cd01049
360102003294	dimer interface [polypeptide binding]; other site
360102003295	putative radical transfer pathway; other site
360102003296	diiron center [ion binding]; other site
360102003297	tyrosyl radical; other site
360102003298	ribonucleotide-diphosphate reductase subunit alpha; Validated; Region: PRK09103
360102003299	ATP cone domain; Region: ATP-cone; pfam03477
360102003300	Class I ribonucleotide reductase; Region: RNR_I; cd01679
360102003301	active site
360102003302	dimer interface [polypeptide binding]; other site
360102003303	catalytic residues [active]
360102003304	effector binding site; other site
360102003305	R2 peptide binding site; other site
360102003306	bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional; Region: PRK05134
360102003307	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102003308	S-adenosylmethionine binding site [chemical binding]; other site
360102003309	DNA gyrase subunit A; Validated; Region: PRK05560
360102003310	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cd00187
360102003311	CAP-like domain; other site
360102003312	active site
360102003313	primary dimer interface [polypeptide binding]; other site
360102003314	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
360102003315	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
360102003316	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
360102003317	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
360102003318	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
360102003319	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
360102003320	hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional; Region: PRK10841
360102003321	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102003322	dimer interface [polypeptide binding]; other site
360102003323	phosphorylation site [posttranslational modification]
360102003324	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102003325	ATP binding site [chemical binding]; other site
360102003326	Mg2+ binding site [ion binding]; other site
360102003327	G-X-G motif; other site
360102003328	RcsC Alpha-Beta-Loop (ABL); Region: RcsC; pfam09456
360102003329	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102003330	active site
360102003331	phosphorylation site [posttranslational modification]
360102003332	intermolecular recognition site; other site
360102003333	dimerization interface [polypeptide binding]; other site
360102003334	transcriptional regulator RcsB; Provisional; Region: PRK10840
360102003335	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102003336	active site
360102003337	phosphorylation site [posttranslational modification]
360102003338	intermolecular recognition site; other site
360102003339	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102003340	DNA binding residues [nucleotide binding]
360102003341	dimerization interface [polypeptide binding]; other site
360102003342	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
360102003343	putative binding surface; other site
360102003344	active site
360102003345	phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional; Region: PRK10618
360102003346	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102003347	ATP binding site [chemical binding]; other site
360102003348	Mg2+ binding site [ion binding]; other site
360102003349	G-X-G motif; other site
360102003350	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
360102003351	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
360102003352	trimer interface [polypeptide binding]; other site
360102003353	eyelet of channel; other site
360102003354	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG1943
360102003355	Transposase IS200 like; Region: Y1_Tnp; cl00848
360102003356	beta-lactam binding protein AmpH; Provisional; Region: PRK10662
360102003357	Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]; Region: AmpC; COG1680
360102003358	Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]; Region: MelB; COG2211
360102003359	melibiose:sodium symporter; Provisional; Region: PRK10429; cl15392
360102003360	Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]; Region: COG2220
360102003361	Beta-lactamase superfamily domain; Region: Lactamase_B_2; pfam12706
360102003362	Cache domain; Region: Cache_1; pfam02743
360102003363	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102003364	dimerization interface [polypeptide binding]; other site
360102003365	Methyl-accepting chemotaxis protein (MCP) signalling domain; Region: MCPsignal; pfam00015
360102003366	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
360102003367	dimer interface [polypeptide binding]; other site
360102003368	putative CheW interface [polypeptide binding]; other site
360102003369	Outer membrane protease [Cell envelope biogenesis, outer membrane]; Region: OmpT; COG4571
360102003370	DinI-like family; Region: DinI; cl11630
360102003371	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
360102003372	non-specific DNA binding site [nucleotide binding]; other site
360102003373	SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]; Region: LexA; COG1974
360102003374	salt bridge; other site
360102003375	sequence-specific DNA binding site [nucleotide binding]; other site
360102003376	Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC...; Region: S24_LexA-like; cd06529
360102003377	Catalytic site [active]
360102003378	Phage antitermination protein Q; Region: Phage_antitermQ; pfam06530
360102003379	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3395
360102003380	putative aldolase; Validated; Region: PRK08130
360102003381	intersubunit interface [polypeptide binding]; other site
360102003382	active site
360102003383	Zn2+ binding site [ion binding]; other site
360102003384	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
360102003385	helix_turn_helix, Deoxyribose operon repressor; Region: HTH_DEOR; smart00420
360102003386	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
360102003387	Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]; Region: Hfi; COG3622
360102003388	Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011
360102003389	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
360102003390	Protein of unknown function (DUF2635); Region: DUF2635; pfam10948
360102003391	Mu-like prophage tail sheath protein gpL [General function prediction only]; Region: COG4386
360102003392	Phage tail sheath protein; Region: Phage_sheath_1; pfam04984
360102003393	Phage tail tube protein; Region: Tail_tube; pfam10618
360102003394	Mu-like prophage FluMu protein gp41; Region: FluMu_gp41; pfam10109
360102003395	Mu-like prophage DNA circulation protein [General function prediction only]; Region: COG4228
360102003396	DNA circulation protein N-terminus; Region: DNA_circ_N; pfam07157
360102003397	Mu-like prophage tail protein gpP [General function prediction only]; Region: COG4379
360102003398	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
360102003399	Mu-like prophage protein gp45 [Function unknown]; Region: COG4384
360102003400	Mu-like prophage protein gp46 [Function unknown]; Region: COG4381
360102003401	Uncharacterized homolog of phage Mu protein gp47 [Function unknown]; Region: XkdT; COG3299
360102003402	Uncharacterized protein conserved in bacteria (DUF2313); Region: DUF2313; cl01542
360102003403	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3778
360102003404	Phage Tail Collar Domain; Region: Collar; pfam07484
360102003405	Transcriptional regulators [Transcription]; Region: RpiR; COG1737
360102003406	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
360102003407	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
360102003408	putative active site [active]
360102003409	Glycosyl hydrolase family 1; Region: Glyco_hydro_1; cl01046
360102003410	beta-galactosidase; Region: BGL; TIGR03356
360102003411	HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
360102003412	active site
360102003413	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102003414	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102003415	DNA-binding interface [nucleotide binding]; DNA binding site
360102003416	Integrase core domain; Region: rve; pfam00665
360102003417	transposase/IS protein; Provisional; Region: PRK09183
360102003418	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102003419	Walker A motif; other site
360102003420	ATP binding site [chemical binding]; other site
360102003421	Walker B motif; other site
360102003422	Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]; Region: COG3083
360102003423	Domain of unknown function (DUF3413); Region: DUF3413; pfam11893
360102003424	Sulfatase; Region: Sulfatase; cl17466
360102003425	hypothetical protein; Provisional; Region: PRK13689
360102003426	Nucleoid-associated protein [General function prediction only]; Region: COG3081
360102003427	nucleoid-associated protein NdpA; Validated; Region: PRK00378
360102003428	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102003429	Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain; Region: Ribosomal_L25_TL5_CTC; cd00495
360102003430	5S rRNA interface [nucleotide binding]; other site
360102003431	CTC domain interface [polypeptide binding]; other site
360102003432	L16 interface [polypeptide binding]; other site
360102003433	DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]; Region: SSL2; COG1061
360102003434	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
360102003435	ATP binding site [chemical binding]; other site
360102003436	putative Mg++ binding site [ion binding]; other site
360102003437	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102003438	nucleotide binding region [chemical binding]; other site
360102003439	ATP-binding site [chemical binding]; other site
360102003440	Double zinc ribbon; Region: DZR; pfam12773
360102003441	16S rRNA pseudouridylate synthase A; Provisional; Region: PRK10839
360102003442	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
360102003443	RNA binding surface [nucleotide binding]; other site
360102003444	Pseudouridine synthase, Escherichia coli RsuA like; Region: PseudoU_synth_RsuA; cd02553
360102003445	active site
360102003446	uracil binding [chemical binding]; other site
360102003447	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102003448	bicyclomycin/multidrug efflux system; Provisional; Region: PRK11102
360102003449	putative substrate translocation pore; other site
360102003450	hypothetical protein; Provisional; Region: PRK11835
360102003451	microcin C ABC transporter ATP-binding protein YejF; Provisional; Region: PRK15134
360102003452	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102003453	Walker A/P-loop; other site
360102003454	ATP binding site [chemical binding]; other site
360102003455	Q-loop/lid; other site
360102003456	ABC transporter signature motif; other site
360102003457	Walker B; other site
360102003458	D-loop; other site
360102003459	H-loop/switch region; other site
360102003460	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
360102003461	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102003462	Walker A/P-loop; other site
360102003463	ATP binding site [chemical binding]; other site
360102003464	Q-loop/lid; other site
360102003465	ABC transporter signature motif; other site
360102003466	Walker B; other site
360102003467	D-loop; other site
360102003468	H-loop/switch region; other site
360102003469	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4239
360102003470	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
360102003471	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102003472	dimer interface [polypeptide binding]; other site
360102003473	conserved gate region; other site
360102003474	putative PBP binding loops; other site
360102003475	ABC-ATPase subunit interface; other site
360102003476	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4174
360102003477	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102003478	dimer interface [polypeptide binding]; other site
360102003479	conserved gate region; other site
360102003480	putative PBP binding loops; other site
360102003481	ABC-ATPase subunit interface; other site
360102003482	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
360102003483	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_14; cd08497
360102003484	phage resistance protein; Provisional; Region: PRK10551
360102003485	CSS motif domain associated with EAL; Region: CSS-motif; pfam12792
360102003486	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
360102003487	outer membrane lipoprotein; Provisional; Region: spr; PRK10838
360102003488	NlpC/P60 family; Region: NLPC_P60; pfam00877
360102003489	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
360102003490	PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cd01610
360102003491	active site
360102003492	Putative GTPases (G3E family) [General function prediction only]; Region: COG0523
360102003493	CobW/HypB/UreG, nucleotide-binding domain; Region: cobW; pfam02492
360102003494	Cobalamin synthesis protein cobW C-terminal domain; Region: CobW_C; smart00833
360102003495	DNA-binding transcriptional repressor UxuR; Provisional; Region: PRK10225
360102003496	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102003497	DNA-binding site [nucleotide binding]; DNA binding site
360102003498	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
360102003499	Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]; Region: MtlD; COG0246
360102003500	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
360102003501	Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125
360102003502	mannonate dehydratase; Provisional; Region: PRK03906
360102003503	mannonate dehydratase; Region: uxuA; TIGR00695
360102003504	elongation factor P; Provisional; Region: PRK04542
360102003505	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
360102003506	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
360102003507	RNA binding site [nucleotide binding]; other site
360102003508	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
360102003509	RNA binding site [nucleotide binding]; other site
360102003510	Tryptophan/tyrosine permease family; Region: Trp_Tyr_perm; cl17316
360102003511	aromatic amino acid transport protein; Region: araaP; TIGR00837
360102003512	Predicted Fe-S-cluster oxidoreductase [General function prediction only]; Region: COG0727
360102003513	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653
360102003514	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
360102003515	NAD(P) binding site [chemical binding]; other site
360102003516	active site
360102003517	Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]; Region: SerA; COG0111
360102003518	C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor; Region: CtBP_dh; cd05299
360102003519	ligand binding site [chemical binding]; other site
360102003520	NAD binding site [chemical binding]; other site
360102003521	catalytic site [active]
360102003522	Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]; Region: COG3970
360102003523	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
360102003524	putative transposase OrfB; Reviewed; Region: PHA02517
360102003525	HTH-like domain; Region: HTH_21; pfam13276
360102003526	Integrase core domain; Region: rve; pfam00665
360102003527	Integrase core domain; Region: rve_2; pfam13333
360102003528	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
360102003529	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102003530	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102003531	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
360102003532	Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like; Region: ALDH_F5_SSADH_GabD; cd07103
360102003533	tetramerization interface [polypeptide binding]; other site
360102003534	NAD(P) binding site [chemical binding]; other site
360102003535	catalytic residues [active]
360102003536	Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]; Region: XylB; COG1070
360102003537	Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases; Region: FGGY_D-XK_EcXK-like; cd07808
360102003538	N- and C-terminal domain interface [polypeptide binding]; other site
360102003539	active site
360102003540	MgATP binding site [chemical binding]; other site
360102003541	catalytic site [active]
360102003542	metal binding site [ion binding]; metal-binding site
360102003543	xylulose binding site [chemical binding]; other site
360102003544	homodimer interface [polypeptide binding]; other site
360102003545	RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the...; Region: RPI_A; cd01398
360102003546	tetramer (dimer of dimers) interface [polypeptide binding]; other site
360102003547	active site
360102003548	dimer interface [polypeptide binding]; other site
360102003549	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879
360102003550	Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily; Region: PBP1_ABC_sugar_binding_like; cd01536
360102003551	ligand binding site [chemical binding]; other site
360102003552	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
360102003553	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102003554	Walker A/P-loop; other site
360102003555	ATP binding site [chemical binding]; other site
360102003556	Q-loop/lid; other site
360102003557	ABC transporter signature motif; other site
360102003558	Walker B; other site
360102003559	D-loop; other site
360102003560	H-loop/switch region; other site
360102003561	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102003562	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102003563	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102003564	TM-ABC transporter signature motif; other site
360102003565	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_19; cd04678
360102003566	nudix motif; other site
360102003567	bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; Provisional; Region: PRK11109
360102003568	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
360102003569	active site
360102003570	phosphorylation site [posttranslational modification]
360102003571	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cl00163
360102003572	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
360102003573	dimerization domain swap beta strand [polypeptide binding]; other site
360102003574	regulatory protein interface [polypeptide binding]; other site
360102003575	active site
360102003576	regulatory phosphorylation site [posttranslational modification]; other site
360102003577	Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]; Region: FruK; COG1105
360102003578	1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose...; Region: FruK_PfkB_like; cd01164
360102003579	putative substrate binding site [chemical binding]; other site
360102003580	putative ATP binding site [chemical binding]; other site
360102003581	PTS system fructose-specific transporter subunits IIBC; Provisional; Region: PRK10712
360102003582	N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]; Region: COG3925
360102003583	PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and...; Region: PTS_IIB_fructose; cd05569
360102003584	active site
360102003585	P-loop; other site
360102003586	phosphorylation site [posttranslational modification]
360102003587	PTS system, fructose subfamily, IIC component; Region: PTS_IIC_fructo; TIGR01427
360102003588	DNA-binding winged-HTH domains [Transcription]; Region: CadC; COG3710
360102003589	DNA binding site [nucleotide binding]
360102003590	pili assembly chaperone protein SafB; Provisional; Region: PRK15224
360102003591	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102003592	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
360102003593	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
360102003594	PapC N-terminal domain; Region: PapC_N; pfam13954
360102003595	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102003596	PapC C-terminal domain; Region: PapC_C; pfam13953
360102003597	endonuclease IV; Provisional; Region: PRK01060
360102003598	AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of...; Region: AP2Ec; cd00019
360102003599	AP (apurinic/apyrimidinic) site pocket; other site
360102003600	DNA interaction; other site
360102003601	Metal-binding active site; metal-binding site
360102003602	Predicted membrane protein [Function unknown]; Region: COG2855
360102003603	putative DNA-binding transcriptional regulator; Provisional; Region: PRK10837
360102003604	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102003605	C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold; Region: PBP2_CysL_like; cd08420
360102003606	putative dimerization interface [polypeptide binding]; other site
360102003607	lysine transporter; Provisional; Region: PRK10836
360102003608	Periplasmic binding protein TroA_f.  These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a...; Region: TroA_f; cd01139
360102003609	ferrichrome/ferrioxamine B periplasmic transporter; Provisional; Region: PRK14048
360102003610	putative ligand binding residues [chemical binding]; other site
360102003611	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
360102003612	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cl00462
360102003613	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102003614	ABC-ATPase subunit  interface; other site
360102003615	dimer interface [polypeptide binding]; other site
360102003616	putative PBP binding regions; other site
360102003617	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120
360102003618	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
360102003619	Walker A/P-loop; other site
360102003620	ATP binding site [chemical binding]; other site
360102003621	Q-loop/lid; other site
360102003622	ABC transporter signature motif; other site
360102003623	Walker B; other site
360102003624	D-loop; other site
360102003625	H-loop/switch region; other site
360102003626	putative outer membrane receptor; Provisional; Region: PRK13513
360102003627	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102003628	N-terminal plug; other site
360102003629	ligand-binding site [chemical binding]; other site
360102003630	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
360102003631	GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of...; Region: GST_N_2; cd03047
360102003632	putative C-terminal domain interface [polypeptide binding]; other site
360102003633	putative GSH binding site (G-site) [chemical binding]; other site
360102003634	putative dimer interface [polypeptide binding]; other site
360102003635	C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases; Region: GST_C_2; cd03180
360102003636	putative N-terminal domain interface [polypeptide binding]; other site
360102003637	putative dimer interface [polypeptide binding]; other site
360102003638	putative substrate binding pocket (H-site) [chemical binding]; other site
360102003639	Phosphoserine phosphatase [Amino acid transport and metabolism]; Region: SerB; COG0560
360102003640	haloacid dehalogenase-like hydrolase; Region: HAD; cl17202
360102003641	Isopenicillin N synthase and related dioxygenases [General function prediction only]; Region: PcbC; COG3491
360102003642	non-haem dioxygenase in morphine synthesis N-terminal; Region: DIOX_N; pfam14226
360102003643	2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy; pfam03171
360102003644	NLPA lipoprotein; Region: Lipoprotein_9; pfam03180
360102003645	ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]; Region: NlpA; COG1464
360102003646	ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]; Region: AbcC; COG1135
360102003647	ATP-binding cassette domain of methionine transporter; Region: ABC_MetN_methionine_transporter; cd03258
360102003648	Walker A/P-loop; other site
360102003649	ATP binding site [chemical binding]; other site
360102003650	Q-loop/lid; other site
360102003651	ABC transporter signature motif; other site
360102003652	Walker B; other site
360102003653	D-loop; other site
360102003654	H-loop/switch region; other site
360102003655	NIL domain; Region: NIL; pfam09383
360102003656	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102003657	dimer interface [polypeptide binding]; other site
360102003658	conserved gate region; other site
360102003659	ABC-ATPase subunit interface; other site
360102003660	Beta-lactamase enzyme family; Region: Beta-lactamase2; cl17872
360102003661	transposase/IS protein; Provisional; Region: PRK09183
360102003662	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102003663	Walker A motif; other site
360102003664	ATP binding site [chemical binding]; other site
360102003665	Walker B motif; other site
360102003666	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102003667	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102003668	DNA-binding interface [nucleotide binding]; DNA binding site
360102003669	Integrase core domain; Region: rve; pfam00665
360102003670	3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]; Region: AroG; cl17260
360102003671	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
360102003672	catalytic core [active]
360102003673	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
360102003674	psiF repeat; Region: PsiF_repeat; pfam07769
360102003675	psiF repeat; Region: PsiF_repeat; pfam07769
360102003676	galactose mutarotase_like; Region: galactose_mutarotase_like; cd09019
360102003677	active site
360102003678	catalytic residues [active]
360102003679	aldose 1-epimerase superfamily; Region: Aldose_epim; cl14648
360102003680	galactokinase; Provisional; Region: PRK05101
360102003681	Galactokinase galactose-binding signature; Region: GalKase_gal_bdg; pfam10509
360102003682	GHMP kinases N terminal domain; Region: GHMP_kinases_N; pfam00288
360102003683	galactose-1-phosphate uridylyltransferase; Provisional; Region: PRK11720
360102003684	Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme...; Region: GalT; cd00608
360102003685	dimer interface [polypeptide binding]; other site
360102003686	active site
360102003687	UDP-galactose-4-epimerase; Provisional; Region: PRK10675
360102003688	UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs; Region: UDP_G4E_1_SDR_e; cd05247
360102003689	NAD binding site [chemical binding]; other site
360102003690	homodimer interface [polypeptide binding]; other site
360102003691	active site
360102003692	substrate binding site [chemical binding]; other site
360102003693	CAAX protease self-immunity; Region: Abi; pfam02517
360102003694	putative molybdenum transport ATP-binding protein ModF; Provisional; Region: PRK10938
360102003695	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102003696	Walker A/P-loop; other site
360102003697	ATP binding site [chemical binding]; other site
360102003698	ABC transporter signature motif; other site
360102003699	Walker B; other site
360102003700	D-loop; other site
360102003701	H-loop/switch region; other site
360102003702	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102003703	Walker A/P-loop; other site
360102003704	ATP binding site [chemical binding]; other site
360102003705	Q-loop/lid; other site
360102003706	ABC transporter signature motif; other site
360102003707	Walker B; other site
360102003708	D-loop; other site
360102003709	H-loop/switch region; other site
360102003710	DNA-binding transcriptional regulator ModE; Provisional; Region: PRK10676
360102003711	N-terminal domain of molybdenum-binding protein [General function prediction only]; Region: ModE; COG2005
360102003712	molybdenum-pterin binding domain; Region: Mop; TIGR00638
360102003713	Molybdopterin-binding protein [Coenzyme metabolism]; Region: MopI; COG3585
360102003714	Protein of unknown function (DUF2592); Region: DUF2592; pfam10766
360102003715	molybdate transporter periplasmic protein; Provisional; Region: modA; PRK10677
360102003716	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
360102003717	ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]; Region: CysU; COG0555
360102003718	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102003719	dimer interface [polypeptide binding]; other site
360102003720	conserved gate region; other site
360102003721	putative PBP binding loops; other site
360102003722	ABC-ATPase subunit interface; other site
360102003723	molybdate transporter ATP-binding protein; Provisional; Region: modC; PRK11144
360102003724	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102003725	Walker A/P-loop; other site
360102003726	ATP binding site [chemical binding]; other site
360102003727	Q-loop/lid; other site
360102003728	ABC transporter signature motif; other site
360102003729	Walker B; other site
360102003730	D-loop; other site
360102003731	H-loop/switch region; other site
360102003732	molybdenum-pterin binding domain; Region: Mop; TIGR00638
360102003733	pyridoxal phosphate (PLP) phosphatase; Provisional; Region: PRK10530
360102003734	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102003735	active site
360102003736	motif I; other site
360102003737	motif II; other site
360102003738	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102003739	6-phosphogluconolactonase; Provisional; Region: PRK11028
360102003740	adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated; Region: PRK07986
360102003741	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
360102003742	inhibitor-cofactor binding pocket; inhibition site
360102003743	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102003744	catalytic residue [active]
360102003745	biotin synthase; Provisional; Region: PRK15108
360102003746	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102003747	FeS/SAM binding site; other site
360102003748	Biotin and Thiamin Synthesis associated domain; Region: BATS; smart00876
360102003749	8-amino-7-oxononanoate synthase; Reviewed; Region: PRK05958
360102003750	pyridoxal phosphate-dependent acyltransferase, putative; Region: gly_Cac_T_rel; TIGR01825
360102003751	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102003752	catalytic residue [active]
360102003753	biotin biosynthesis protein BioC; Region: BioC; TIGR02072
360102003754	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102003755	S-adenosylmethionine binding site [chemical binding]; other site
360102003756	Dethiobiotin synthetase [Coenzyme metabolism]; Region: BioD; COG0132
360102003757	AAA domain; Region: AAA_26; pfam13500
360102003758	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
360102003759	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
360102003760	Walker A/P-loop; other site
360102003761	ATP binding site [chemical binding]; other site
360102003762	Q-loop/lid; other site
360102003763	ABC transporter signature motif; other site
360102003764	Walker B; other site
360102003765	D-loop; other site
360102003766	H-loop/switch region; other site
360102003767	excinuclease ABC subunit B; Provisional; Region: PRK05298
360102003768	Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes; Region: Motor_domain; cl00286
360102003769	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
360102003770	ATP-binding site [chemical binding]; other site
360102003771	ATP binding site [chemical binding]; other site
360102003772	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102003773	nucleotide binding region [chemical binding]; other site
360102003774	ATP-binding site [chemical binding]; other site
360102003775	Ultra-violet resistance protein B; Region: UvrB; pfam12344
360102003776	UvrB/uvrC motif; Region: UVR; pfam02151
360102003777	Uncharacterized conserved protein [Function unknown]; Region: COG4628
360102003778	conserved hypothetical protein, cofD-related; Region: CofD_related; TIGR01826
360102003779	family of mostly uncharacterized proteins similar to B.subtilis YvcK; Region: YvcK_like; cd07187
360102003780	phosphate binding site [ion binding]; other site
360102003781	putative substrate binding pocket [chemical binding]; other site
360102003782	dimer interface [polypeptide binding]; other site
360102003783	molybdenum cofactor biosynthesis protein A; Reviewed; Region: moaA; PRK00164
360102003784	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102003785	FeS/SAM binding site; other site
360102003786	Molybdenum Cofactor Synthesis C; Region: Mob_synth_C; pfam06463
360102003787	MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine...; Region: MoaC_PE; cd01420
360102003788	trimer interface [polypeptide binding]; other site
360102003789	dimer interface [polypeptide binding]; other site
360102003790	putative active site [active]
360102003791	Ubiquitin domain of MoaD-like proteins; Region: MoaD; cd00754
360102003792	MoaE interaction surface [polypeptide binding]; other site
360102003793	MoeB interaction surface [polypeptide binding]; other site
360102003794	thiocarboxylated glycine; other site
360102003795	MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoaE; cd00756
360102003796	MoaE homodimer interface [polypeptide binding]; other site
360102003797	MoaD interaction [polypeptide binding]; other site
360102003798	active site residues [active]
360102003799	Integral membrane protein, interacts with FtsH [General function prediction only]; Region: COG0670
360102003800	Bacterial BAX inhibitor (BI)-1/YccA-like proteins; Region: BI-1-like_bacterial; cd10432
360102003801	Integral membrane protein, interacts with FtsH [General function prediction only]; Region: COG0670
360102003802	Bacterial BAX inhibitor (BI)-1/YccA-like proteins; Region: BI-1-like_bacterial; cd10432
360102003803	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102003804	choline dehydrogenase; Validated; Region: PRK02106
360102003805	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
360102003806	betaine aldehyde dehydrogenase; Provisional; Region: PRK13252
360102003807	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
360102003808	NAD(P) binding site [chemical binding]; other site
360102003809	catalytic residues [active]
360102003810	transcriptional regulator BetI; Validated; Region: PRK00767
360102003811	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
360102003812	Bacterial transcriptional repressor; Region: TetR_C_6; pfam13977
360102003813	choline transport protein BetT; Provisional; Region: PRK09928
360102003814	DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986
360102003815	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102003816	The C-terminal substrate binding domain of LysR-type transcriptional regulator XapR involved in xanthosine catabolism, contains the type 2 periplasmic binding fold; Region: PBP2_XapR; cd08449
360102003817	putative dimerization interface [polypeptide binding]; other site
360102003818	putative substrate binding pocket [chemical binding]; other site
360102003819	EamA-like transporter family; Region: EamA; pfam00892
360102003820	xanthosine phosphorylase; Region: XAPA; TIGR01699
360102003821	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102003822	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102003823	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102003824	zinc resistance protein; Provisional; Region: zraP; PRK11546
360102003825	dimer interface [polypeptide binding]; other site
360102003826	Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852
360102003827	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
360102003828	putative active site [active]
360102003829	heme pocket [chemical binding]; other site
360102003830	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102003831	dimer interface [polypeptide binding]; other site
360102003832	phosphorylation site [posttranslational modification]
360102003833	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102003834	ATP binding site [chemical binding]; other site
360102003835	Mg2+ binding site [ion binding]; other site
360102003836	G-X-G motif; other site
360102003837	transcriptional regulatory protein ZraR; Provisional; Region: PRK10365
360102003838	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102003839	active site
360102003840	phosphorylation site [posttranslational modification]
360102003841	intermolecular recognition site; other site
360102003842	dimerization interface [polypeptide binding]; other site
360102003843	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102003844	Walker A motif; other site
360102003845	ATP binding site [chemical binding]; other site
360102003846	Walker B motif; other site
360102003847	arginine finger; other site
360102003848	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
360102003849	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
360102003850	Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a...; Region: OYE_like_FMN; cd02933
360102003851	FMN binding site [chemical binding]; other site
360102003852	active site
360102003853	substrate binding site [chemical binding]; other site
360102003854	catalytic residue [active]
360102003855	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102003856	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102003857	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_6; cd08475
360102003858	putative effector binding pocket; other site
360102003859	putative dimerization interface [polypeptide binding]; other site
360102003860	luciferase family oxidoreductase, group 1; Region: oxido_grp_1; TIGR03558
360102003861	conserved hypothetical protein; Region: TIGR02118
360102003862	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
360102003863	ABC-2 type transporter; Region: ABC2_membrane; pfam01061
360102003864	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
360102003865	ABC-2 family transporter protein; Region: ABC2_membrane_2; pfam12679
360102003866	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
360102003867	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
360102003868	Walker A/P-loop; other site
360102003869	ATP binding site [chemical binding]; other site
360102003870	Q-loop/lid; other site
360102003871	ABC transporter signature motif; other site
360102003872	Walker B; other site
360102003873	D-loop; other site
360102003874	H-loop/switch region; other site
360102003875	ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]; Region: NatA; COG4555
360102003876	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
360102003877	Walker A/P-loop; other site
360102003878	ATP binding site [chemical binding]; other site
360102003879	Q-loop/lid; other site
360102003880	ABC transporter signature motif; other site
360102003881	Walker B; other site
360102003882	D-loop; other site
360102003883	H-loop/switch region; other site
360102003884	putative efflux pump membrane fusion protein; Provisional; Region: PRK03598
360102003885	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102003886	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102003887	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11552
360102003888	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
360102003889	Domain of unknown function (DUF1956); Region: DUF1956; pfam09209
360102003890	ATP-dependent RNA helicase RhlE; Provisional; Region: PRK10590
360102003891	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
360102003892	ATP binding site [chemical binding]; other site
360102003893	Mg++ binding site [ion binding]; other site
360102003894	motif III; other site
360102003895	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102003896	nucleotide binding region [chemical binding]; other site
360102003897	ATP-binding site [chemical binding]; other site
360102003898	DDE superfamily endonuclease; Region: DDE_3; pfam13358
360102003899	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102003900	MULE transposase domain; Region: MULE; pfam10551
360102003901	Transcriptional regulators [Transcription]; Region: PurR; COG1609
360102003902	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102003903	DNA binding site [nucleotide binding]
360102003904	domain linker motif; other site
360102003905	Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_AglR_RafR_like; cd06271
360102003906	ligand binding site [chemical binding]; other site
360102003907	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102003908	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102003909	DNA-binding interface [nucleotide binding]; DNA binding site
360102003910	Integrase core domain; Region: rve; pfam00665
360102003911	transposase/IS protein; Provisional; Region: PRK09183
360102003912	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102003913	Walker A motif; other site
360102003914	ATP binding site [chemical binding]; other site
360102003915	Walker B motif; other site
360102003916	Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011
360102003917	DgsA anti-repressor MtfA; Provisional; Region: PRK15410
360102003918	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2350
360102003919	Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]; Region: RIO1; COG1718
360102003920	RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein...; Region: RIO1_like; cd05145
360102003921	ATP binding site [chemical binding]; other site
360102003922	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
360102003923	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102003924	ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; Region: ABCC_MsbA; cd03251
360102003925	Walker A/P-loop; other site
360102003926	ATP binding site [chemical binding]; other site
360102003927	Q-loop/lid; other site
360102003928	ABC transporter signature motif; other site
360102003929	Walker B; other site
360102003930	D-loop; other site
360102003931	H-loop/switch region; other site
360102003932	DNA-binding transcriptional regulator SoxS; Provisional; Region: PRK10219
360102003933	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102003934	Protein of unknown function (DUF2766); Region: DUF2766; pfam10964
360102003935	YobH-like protein; Region: YobH; pfam13996
360102003936	YebO-like protein; Region: YebO; pfam13974
360102003937	Protein of unknown function (DUF2591); Region: DUF2591; pfam10765
360102003938	Protein of unknown function (DUF4060); Region: DUF4060; pfam13269
360102003939	aromatic amino acid transporter; Provisional; Region: PRK10238
360102003940	phospholipid:lipid A palmitoyltransferase; Provisional; Region: pagP; PRK11045
360102003941	Protein of unknown function (DUF2627); Region: DUF2527; pfam10736
360102003942	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
360102003943	DNA-binding site [nucleotide binding]; DNA binding site
360102003944	RNA-binding motif; other site
360102003945	Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]; Region: yfiH; COG1496
360102003946	Multi-copper polyphenol oxidoreductase laccase; Region: Cu-oxidase_4; pfam02578
360102003947	23S rRNA methyltransferase A; Provisional; Region: rrmA; PRK11088
360102003948	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102003949	S-adenosylmethionine binding site [chemical binding]; other site
360102003950	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
360102003951	PAS domain; Region: PAS_9; pfam13426
360102003952	putative active site [active]
360102003953	heme pocket [chemical binding]; other site
360102003954	PAS domain S-box; Region: sensory_box; TIGR00229
360102003955	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
360102003956	putative active site [active]
360102003957	heme pocket [chemical binding]; other site
360102003958	PAS domain S-box; Region: sensory_box; TIGR00229
360102003959	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
360102003960	putative active site [active]
360102003961	heme pocket [chemical binding]; other site
360102003962	PAS fold; Region: PAS; pfam00989
360102003963	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
360102003964	putative active site [active]
360102003965	heme pocket [chemical binding]; other site
360102003966	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
360102003967	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
360102003968	metal binding site [ion binding]; metal-binding site
360102003969	active site
360102003970	I-site; other site
360102003971	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
360102003972	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102003973	N-terminal plug; other site
360102003974	ligand-binding site [chemical binding]; other site
360102003975	hypothetical protein; Provisional; Region: PRK11469
360102003976	Domain of unknown function DUF; Region: DUF204; pfam02659
360102003977	Domain of unknown function DUF; Region: DUF204; pfam02659
360102003978	hypothetical protein; Provisional; Region: PRK02913
360102003979	PTS system mannose-specific transporter subunit IID; Provisional; Region: PRK11103
360102003980	PTS system mannose-specific transporter subunit IIC; Provisional; Region: PRK15065
360102003981	PTS system mannose-specific transporter subunits IIAB; Provisional; Region: PRK15088
360102003982	PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_man; cd00006
360102003983	active pocket/dimerization site; other site
360102003984	active site
360102003985	PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_man; cd00001
360102003986	active site
360102003987	phosphorylation site [posttranslational modification]
360102003988	Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]; Region: TerC; COG0861
360102003989	Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253
360102003990	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
360102003991	Transporter associated domain; Region: CorC_HlyC; smart01091
360102003992	homoprotocatechuate degradation operon regulator, HpaR; Region: HpaR; TIGR02337
360102003993	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
360102003994	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421
360102003995	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit; Region: HpaG-C-term; TIGR02303
360102003996	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
360102003997	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; Region: HpaE; TIGR02299
360102003998	Human aldehyde dehydrogenase family 8 member A1-like; Region: ALDH_F8_HMSADH; cd07093
360102003999	NAD binding site [chemical binding]; other site
360102004000	catalytic residues [active]
360102004001	The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate; Region: HPCD; cd07370
360102004002	Catalytic LigB subunit of aromatic ring-opening dioxygenase; Region: LigB; pfam02900
360102004003	putative active site [active]
360102004004	putative metal binding site [ion binding]; other site
360102004005	5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the...; Region: CHMI; cd00580
360102004006	trimer interface [polypeptide binding]; other site
360102004007	putative substrate binding pocket [chemical binding]; other site
360102004008	2-oxo-hepta-3-ene-1,7-dioic acid hydratase; Region: HpaH; TIGR02312
360102004009	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Region: HpaI; TIGR02311
360102004010	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
360102004011	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102004012	putative substrate translocation pore; other site
360102004013	4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; Region: HpaB-2; TIGR02310
360102004014	4-hydroxyphenylacetate 3-hydroxylase C terminal; Region: HpaB; pfam03241
360102004015	Flavin Reductases; Region: FlaRed; cl00801
360102004016	L-serine dehydratase, iron-sulfur-dependent, single chain form; Region: sda_mono; TIGR00720
360102004017	Serine dehydratase beta chain; Region: SDH_beta; pfam03315
360102004018	Serine dehydratase alpha chain; Region: SDH_alpha; pfam03313
360102004019	Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative...; Region: CoAse; cd03426
360102004020	putative active site [active]
360102004021	putative CoA binding site [chemical binding]; other site
360102004022	nudix motif; other site
360102004023	metal binding site [ion binding]; metal-binding site
360102004024	aminodeoxychorismate synthase subunit I; Provisional; Region: pabB; PRK15465
360102004025	Anthranilate synthase component I, N terminal region; Region: Anth_synt_I_N; pfam04715
360102004026	chorismate binding enzyme; Region: Chorismate_bind; cl10555
360102004027	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3140
360102004028	phosphoribosylglycinamide formyltransferase 2; Validated; Region: purT; PRK09288
360102004029	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
360102004030	ATP-grasp domain; Region: ATP-grasp; pfam02222
360102004031	ATP-dependent RNA helicase DbpA; Provisional; Region: PRK11776
360102004032	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
360102004033	ATP binding site [chemical binding]; other site
360102004034	Mg++ binding site [ion binding]; other site
360102004035	motif III; other site
360102004036	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102004037	nucleotide binding region [chemical binding]; other site
360102004038	ATP-binding site [chemical binding]; other site
360102004039	RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169
360102004040	YebG protein; Region: YebG; pfam07130
360102004041	ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as...; Region: ASCH_yqfb_like; cd06552
360102004042	hypothetical protein; Provisional; Region: PRK13680
360102004043	Protease II [Amino acid transport and metabolism]; Region: PtrB; COG1770
360102004044	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
360102004045	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102004046	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102004047	DNA-binding interface [nucleotide binding]; DNA binding site
360102004048	Integrase core domain; Region: rve; pfam00665
360102004049	transposase/IS protein; Provisional; Region: PRK09183
360102004050	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102004051	Walker A motif; other site
360102004052	ATP binding site [chemical binding]; other site
360102004053	Walker B motif; other site
360102004054	proline iminopeptidase, Neisseria-type subfamily; Region: pro_imino_pep_1; TIGR01249
360102004055	DNA polymerase III subunit theta; Reviewed; Region: PRK10969
360102004056	nonheme-containing ferritins; Region: Nonheme_Ferritin; cd01055
360102004057	Ferritin-like domain; Region: Ferritin; pfam00210
360102004058	ferroxidase diiron center [ion binding]; other site
360102004059	Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]; Region: CopC; COG2372
360102004060	Putative copper export protein [Inorganic ion transport and metabolism]; Region: PcoD; COG1276
360102004061	Protein of unknown function (DUF2511); Region: DUF2511; pfam10709
360102004062	Protein of unknown function (DUF1493); Region: DUF1493; pfam07377
360102004063	flagellar biosynthesis protein FlhB; Reviewed; Region: flhB; PRK12468
360102004064	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257; cl15822
360102004065	Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FlhA; cl07980
360102004066	FHIPEP family; Region: FHIPEP; pfam00771
360102004067	Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FlhA; cl07980
360102004068	FHIPEP family; Region: FHIPEP; pfam00771
360102004069	Flagellar protein FlhE; Region: FlhE; pfam06366
360102004070	Protein of unknown function (DUF3442); Region: DUF3442; pfam11924
360102004071	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102004072	Protein of unknown function (DUF3442); Region: DUF3442; pfam11924
360102004073	Bacterial Ig-like domain (group 1); Region: BID_1; smart00634
360102004074	Bacterial Ig-like domain (group 1); Region: Big_1; pfam02369
360102004075	Invasin, domain 3; Region: Invasin_D3; pfam09134
360102004076	Intimin C-type lectin domain; Region: Intimin_C; pfam07979
360102004077	Flagellar biosynthesis/type III secretory pathway chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]; Region: COG3418
360102004078	anti-sigma28 factor FlgM; Provisional; Region: PRK10810
360102004079	flagellar basal body P-ring biosynthesis protein FlgA; Reviewed; Region: flgA; PRK07018
360102004080	SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; Region: SAF_CpaB_FlgA_like; cd11614
360102004081	flagellar basal body rod protein FlgB; Reviewed; Region: flgB; PRK05680
360102004082	flagellar basal body rod protein FlgB; Reviewed; Region: flgB; PRK07182
360102004083	flagellar basal body rod protein FlgC; Reviewed; Region: flgC; PRK05681
360102004084	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
360102004085	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
360102004086	flagellar basal body rod modification protein; Reviewed; Region: flgD; PRK06655
360102004087	Flagellar hook capping protein - N-terminal region; Region: FlgD; pfam03963
360102004088	FlgD Tudor-like domain; Region: FLgD_tudor; pfam13861
360102004089	flagellar hook protein FlgE; Validated; Region: flgE; PRK05682
360102004090	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
360102004091	Flagellar basal body protein FlaE; Region: FlaE; pfam07559
360102004092	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
360102004093	flagellar basal body rod protein FlgF; Reviewed; Region: flgF; PRK12643
360102004094	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
360102004095	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; cl15855
360102004096	flagellar basal body rod protein FlgG; Provisional; Region: flgG; PRK12693
360102004097	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
360102004098	Flagellar basal body L-ring protein [Cell motility and secretion]; Region: FlgH; COG2063
360102004099	flagellar basal body L-ring protein; Reviewed; Region: flgH; PRK00249
360102004100	flagellar basal body P-ring protein; Provisional; Region: flgI; PRK05303
360102004101	flagellar basal body P-ring protein; Reviewed; Region: flgI; cl14622
360102004102	flagellar rod assembly protein/muramidase FlgJ; Validated; Region: flgJ; PRK05684
360102004103	Rod binding protein [Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]; Region: COG3951
360102004104	Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FlgJ; COG1705
360102004105	flagellar hook-associated protein FlgK; Validated; Region: flgK; PRK08147
360102004106	flagellar hook-associated protein FlgL; Reviewed; Region: flgL; PRK08027
360102004107	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
360102004108	Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]; Region: DeoR; COG2390
360102004109	Sigma-70, region 4; Region: Sigma70_r4_2; pfam08281
360102004110	Putative sugar-binding domain; Region: Sugar-bind; pfam04198
360102004111	short chain dehydrogenase; Validated; Region: PRK08324
360102004112	Class II Aldolase and Adducin N-terminal domain; Region: Aldolase_II; smart01007
360102004113	rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs; Region: R1PA_ADH_SDR_c; cd08943
360102004114	putative NAD(P) binding site [chemical binding]; other site
360102004115	active site
360102004116	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102004117	TM-ABC transporter signature motif; other site
360102004118	Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs; Region: PBP1_LsrB_Quorum_Sensing; cd06302
360102004119	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
360102004120	ligand binding site [chemical binding]; other site
360102004121	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
360102004122	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102004123	Walker A/P-loop; other site
360102004124	ATP binding site [chemical binding]; other site
360102004125	Q-loop/lid; other site
360102004126	ABC transporter signature motif; other site
360102004127	Walker B; other site
360102004128	D-loop; other site
360102004129	H-loop/switch region; other site
360102004130	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102004131	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102004132	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102004133	TM-ABC transporter signature motif; other site
360102004134	2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166
360102004135	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
360102004136	substrate binding site [chemical binding]; other site
360102004137	ATP binding site [chemical binding]; other site
360102004138	Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]; Region: COG1598
360102004139	Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]; Region: COG1724
360102004140	flagellar biosynthesis protein FliR; Reviewed; Region: fliR; PRK05701
360102004141	flagellar biosynthesis protein FliQ; Validated; Region: fliQ; PRK05700
360102004142	flagellar biosynthesis protein FliP; Reviewed; Region: fliP; PRK05699
360102004143	Flagellar biogenesis protein [Cell motility and secretion]; Region: FliO; COG3190
360102004144	flagellar motor switch protein FliN; Validated; Region: fliN; PRK07963
360102004145	flagellar motor switch protein FliM; Validated; Region: fliM; PRK06666
360102004146	Surface presentation of antigens (SPOA); Region: SpoA; pfam01052
360102004147	flagellar basal body-associated protein FliL; Reviewed; Region: fliL; PRK07021
360102004148	Flagellar hook-length control protein [Cell motility and secretion]; Region: FliK; COG3144
360102004149	Flagellar hook-length control protein FliK; Region: Flg_hook; cl17777
360102004150	flagellar biosynthesis chaperone; Validated; Region: fliJ; PRK05689
360102004151	Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]; Region: FliJ; COG2882
360102004152	flagellum-specific ATP synthase; Validated; Region: fliI; PRK07960
360102004153	Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they...; Region: ATPase_flagellum-secretory_path_III; cd01136
360102004154	Walker A motif/ATP binding site; other site
360102004155	Walker B motif; other site
360102004156	flagellar assembly protein H; Validated; Region: fliH; PRK05687
360102004157	Essential protein Yae1, N terminal; Region: Yae1_N; pfam09811
360102004158	Flagellar assembly protein FliH; Region: FliH; pfam02108
360102004159	flagellar motor switch protein G; Validated; Region: fliG; PRK05686
360102004160	FliG C-terminal domain; Region: FliG_C; pfam01706
360102004161	flagellar MS-ring protein; Reviewed; Region: fliF; PRK06007
360102004162	Secretory protein of YscJ/FliF family; Region: YscJ_FliF; pfam01514
360102004163	Flagellar M-ring protein C-terminal; Region: YscJ_FliF_C; pfam08345
360102004164	flagellar hook-basal body protein FliE; Reviewed; Region: fliE; PRK00253
360102004165	Prophage maintenance system killer protein [General function prediction only]; Region: Doc; COG3654
360102004166	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]; Region: AlkA; COG0122
360102004167	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
360102004168	minor groove reading motif; other site
360102004169	helix-hairpin-helix signature motif; other site
360102004170	active site
360102004171	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
360102004172	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cl01054
360102004173	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
360102004174	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102004175	flagellar biosynthesis protein FliT; Provisional; Region: PRK10548
360102004176	flagellar protein FliS; Validated; Region: fliS; PRK05685
360102004177	flagellar capping protein; Reviewed; Region: fliD; PRK08032
360102004178	Flagellar hook-associated protein 2 C-terminus; Region: FliD_N; pfam02465
360102004179	Flagellar hook-associated protein 2 C-terminus; Region: FliD_C; pfam07195
360102004180	flagellin; Validated; Region: PRK06819
360102004181	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
360102004182	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
360102004183	flagellar biosynthesis sigma factor; Validated; Region: fliA; PRK06986
360102004184	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
360102004185	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
360102004186	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
360102004187	DNA binding residues [nucleotide binding]
360102004188	flagella biosynthesis protein FliZ; Provisional; Region: PRK11582
360102004189	D-cysteine desulfhydrase; Validated; Region: PRK03910
360102004190	Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan...; Region: Trp-synth-beta_II; cl00342
360102004191	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102004192	catalytic residue [active]
360102004193	cystine transporter subunit; Provisional; Region: PRK11260
360102004194	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102004195	substrate binding pocket [chemical binding]; other site
360102004196	membrane-bound complex binding site; other site
360102004197	hinge residues; other site
360102004198	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
360102004199	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102004200	dimer interface [polypeptide binding]; other site
360102004201	conserved gate region; other site
360102004202	putative PBP binding loops; other site
360102004203	ABC-ATPase subunit interface; other site
360102004204	putative amino-acid ABC transporter ATP-binding protein YecC; Provisional; Region: PRK11264
360102004205	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
360102004206	Walker A/P-loop; other site
360102004207	ATP binding site [chemical binding]; other site
360102004208	Q-loop/lid; other site
360102004209	ABC transporter signature motif; other site
360102004210	Walker B; other site
360102004211	D-loop; other site
360102004212	H-loop/switch region; other site
360102004213	MarR family; Region: MarR_2; cl17246
360102004214	transposase/IS protein; Provisional; Region: PRK09183
360102004215	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102004216	Walker A motif; other site
360102004217	ATP binding site [chemical binding]; other site
360102004218	Walker B motif; other site
360102004219	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102004220	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102004221	DNA-binding interface [nucleotide binding]; DNA binding site
360102004222	Integrase core domain; Region: rve; pfam00665
360102004223	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed; Region: putA; PRK11809
360102004224	Predicted transcriptional regulator [Transcription]; Region: COG3905
360102004225	Proline dehydrogenase [Amino acid transport and metabolism]; Region: PutA; COG0506
360102004226	Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA; Region: ALDH_PutA-P5CDH; cd07125
360102004227	Glutamate binding site [chemical binding]; other site
360102004228	NAD binding site [chemical binding]; other site
360102004229	catalytic residues [active]
360102004230	Na(+)/proline cotransporter PutP and related proteins; solute binding domain; Region: SLC5sbd_PutP; cd11475
360102004231	Na binding site [ion binding]; other site
360102004232	Iron permease FTR1 family; Region: FTR1; cl00475
360102004233	inactive ferrous ion transporter periplasmic protein EfeO; Provisional; Region: PRK10378
360102004234	Cupredoxin-like domain; Region: Cupredoxin_1; pfam13473
360102004235	Imelysin; Region: Peptidase_M75; pfam09375
360102004236	Predicted iron-dependent peroxidase [Inorganic ion transport and metabolism]; Region: COG2837
360102004237	Dyp-type peroxidase family; Region: Dyp_perox; cl01067
360102004238	NAD(P)H:quinone oxidoreductase; Provisional; Region: PRK03767
360102004239	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
360102004240	N-acetylneuraminic acid mutarotase; Provisional; Region: PRK14131
360102004241	Kelch motif; Region: Kelch_1; pfam01344
360102004242	D-alanine/D-serine/glycine permease; Provisional; Region: PRK11049
360102004243	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl17254
360102004244	GlpM protein; Region: GlpM; pfam06942
360102004245	hypothetical protein; Provisional; Region: PRK10613
360102004246	response regulator; Provisional; Region: PRK09483
360102004247	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102004248	active site
360102004249	phosphorylation site [posttranslational modification]
360102004250	intermolecular recognition site; other site
360102004251	dimerization interface [polypeptide binding]; other site
360102004252	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102004253	DNA binding residues [nucleotide binding]
360102004254	dimerization interface [polypeptide binding]; other site
360102004255	excinuclease ABC subunit C; Validated; Region: uvrC; PRK00558
360102004256	Catalytic GIY-YIG domain of nucleotide excision repair endonucleases UvrC, Cho, and similar proteins; Region: GIY-YIG_UvrC_Cho; cd10434
360102004257	GIY-YIG motif/motif A; other site
360102004258	active site
360102004259	catalytic site [active]
360102004260	putative DNA binding site [nucleotide binding]; other site
360102004261	metal binding site [ion binding]; metal-binding site
360102004262	UvrB/uvrC motif; Region: UVR; pfam02151
360102004263	UvrC Helix-hairpin-helix N-terminal; Region: UvrC_HhH_N; pfam08459
360102004264	Helix-hairpin-helix motif; Region: HHH; pfam00633
360102004265	phosphatidylglycerophosphate synthetase; Provisional; Region: PRK10832
360102004266	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
360102004267	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
360102004268	Replicative DNA helicase [DNA replication, recombination, and repair]; Region: DnaB; COG0305
360102004269	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
360102004270	Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion,    and vesicular transport]; Region: Hcp; COG3157
360102004271	Homeodomain-like domain; Region: HTH_32; pfam13565
360102004272	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
360102004273	Integrase core domain; Region: rve; pfam00665
360102004274	Integrase core domain; Region: rve_3; pfam13683
360102004275	Transposase; Region: HTH_Tnp_1; cl17663
360102004276	Phage tail sheath protein; Region: Phage_sheath_1; cl01389
360102004277	Protein of unknown function (DUF2778); Region: DUF2778; pfam10908
360102004278	Phage baseplate assembly protein W [General function prediction only]; Region: COG3628
360102004279	Phage P2 baseplate assembly protein gpV [General function prediction only]; Region: gpV; COG4540
360102004280	Protein of unknown function (DUF497); Region: DUF497; pfam04365
360102004281	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3514
360102004282	TIR domain; Region: TIR_2; pfam13676
360102004283	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102004284	MULE transposase domain; Region: MULE; pfam10551
360102004285	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102004286	Integrase core domain; Region: rve_3; cl15866
360102004287	Transcriptional regulators [Transcription]; Region: PhnF; COG2188
360102004288	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102004289	DNA-binding site [nucleotide binding]; DNA binding site
360102004290	UTRA domain; Region: UTRA; pfam07702
360102004291	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
360102004292	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
360102004293	Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; pfam02894
360102004294	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
360102004295	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
360102004296	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102004297	dimer interface [polypeptide binding]; other site
360102004298	conserved gate region; other site
360102004299	putative PBP binding loops; other site
360102004300	ABC-ATPase subunit interface; other site
360102004301	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
360102004302	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102004303	dimer interface [polypeptide binding]; other site
360102004304	conserved gate region; other site
360102004305	putative PBP binding loops; other site
360102004306	ABC-ATPase subunit interface; other site
360102004307	sulfate ABC transporter, ATP-binding protein; Region: 3a0106s01; TIGR00968
360102004308	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
360102004309	Walker A/P-loop; other site
360102004310	ATP binding site [chemical binding]; other site
360102004311	Q-loop/lid; other site
360102004312	ABC transporter signature motif; other site
360102004313	Walker B; other site
360102004314	D-loop; other site
360102004315	H-loop/switch region; other site
360102004316	TOBE domain; Region: TOBE_2; pfam08402
360102004317	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102004318	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102004319	DNA-binding interface [nucleotide binding]; DNA binding site
360102004320	Integrase core domain; Region: rve; pfam00665
360102004321	transposase/IS protein; Provisional; Region: PRK09183
360102004322	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102004323	Walker A motif; other site
360102004324	ATP binding site [chemical binding]; other site
360102004325	Walker B motif; other site
360102004326	Haemolysin expression modulating protein; Region: HHA; cl11501
360102004327	phage/conjugal plasmid C-4 type zinc finger protein, TraR family; Region: C4_traR_proteo; TIGR02419
360102004328	Protein of unknown function (DUF2857); Region: DUF2857; pfam11198
360102004329	Predicted transcriptional regulator [Transcription]; Region: AlpA; COG3311
360102004330	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
360102004331	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102004332	N-terminal plug; other site
360102004333	ligand-binding site [chemical binding]; other site
360102004334	Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntE; COG1021
360102004335	2,3-dihydroxybenzoate-AMP ligase; Region: 23DHB-AMP_lg; cd05920
360102004336	acyl-activating enzyme (AAE) consensus motif; other site
360102004337	active site
360102004338	AMP binding site [chemical binding]; other site
360102004339	substrate binding site [chemical binding]; other site
360102004340	Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: GrsT; COG3208
360102004341	Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: PchG; COG4693
360102004342	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
360102004343	polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or...; Region: PKS; cd00833
360102004344	Beta-ketoacyl synthase; Region: PKS_KS; smart00825
360102004345	active site
360102004346	malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128
360102004347	Acyl transferase domain in polyketide synthase (PKS) enzymes; Region: PKS_AT; smart00827
360102004348	Methyltransferase domain; Region: Methyltransf_12; pfam08242
360102004349	ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs; Region: KR_FAS_SDR_x; cd05274
360102004350	KR domain; Region: KR; pfam08659
360102004351	NADP binding site [chemical binding]; other site
360102004352	active site
360102004353	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
360102004354	Condensation domain; Region: Condensation; pfam00668
360102004355	Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020
360102004356	Nonribosomal peptide synthase; Region: NRPS; pfam08415
360102004357	Methyltransferase domain; Region: Methyltransf_12; pfam08242
360102004358	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
360102004359	Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3319
360102004360	Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3433
360102004361	Condensation domain; Region: Condensation; pfam00668
360102004362	Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020
360102004363	Nonribosomal peptide synthase; Region: NRPS; pfam08415
360102004364	The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes; Region: A_NRPS_TlmIV_like; cd12114
360102004365	acyl-activating enzyme (AAE) consensus motif; other site
360102004366	AMP binding site [chemical binding]; other site
360102004367	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102004368	S-adenosylmethionine binding site [chemical binding]; other site
360102004369	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
360102004370	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
360102004371	Condensation domain; Region: Condensation; pfam00668
360102004372	Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020
360102004373	Nonribosomal peptide synthase; Region: NRPS; pfam08415
360102004374	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
360102004375	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
360102004376	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102004377	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102004378	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
360102004379	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102004380	Walker A/P-loop; other site
360102004381	ATP binding site [chemical binding]; other site
360102004382	Q-loop/lid; other site
360102004383	ABC transporter signature motif; other site
360102004384	Walker B; other site
360102004385	D-loop; other site
360102004386	H-loop/switch region; other site
360102004387	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
360102004388	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102004389	Walker A/P-loop; other site
360102004390	ATP binding site [chemical binding]; other site
360102004391	Q-loop/lid; other site
360102004392	ABC transporter signature motif; other site
360102004393	Walker B; other site
360102004394	D-loop; other site
360102004395	H-loop/switch region; other site
360102004396	muropeptide transporter; Validated; Region: ampG; cl17669
360102004397	salicylate synthase Irp9; Reviewed; Region: PRK06772
360102004398	chorismate binding enzyme; Region: Chorismate_bind; pfam00425
360102004399	integrase; Provisional; Region: PRK09692
360102004400	Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801
360102004401	active site
360102004402	Int/Topo IB signature motif; other site
360102004403	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
360102004404	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102004405	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
360102004406	Fimbrial protein; Region: Fimbrial; cl01416
360102004407	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
360102004408	PapC N-terminal domain; Region: PapC_N; pfam13954
360102004409	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102004410	PapC C-terminal domain; Region: PapC_C; pfam13953
360102004411	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
360102004412	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102004413	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
360102004414	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
360102004415	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
360102004416	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102004417	substrate binding pocket [chemical binding]; other site
360102004418	membrane-bound complex binding site; other site
360102004419	hinge residues; other site
360102004420	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102004421	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
360102004422	substrate binding pocket [chemical binding]; other site
360102004423	membrane-bound complex binding site; other site
360102004424	hinge residues; other site
360102004425	Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852
360102004426	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102004427	dimer interface [polypeptide binding]; other site
360102004428	phosphorylation site [posttranslational modification]
360102004429	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102004430	ATP binding site [chemical binding]; other site
360102004431	Mg2+ binding site [ion binding]; other site
360102004432	G-X-G motif; other site
360102004433	Response regulator receiver domain; Region: Response_reg; pfam00072
360102004434	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102004435	active site
360102004436	phosphorylation site [posttranslational modification]
360102004437	intermolecular recognition site; other site
360102004438	dimerization interface [polypeptide binding]; other site
360102004439	transcriptional regulator FimZ; Provisional; Region: PRK09935
360102004440	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102004441	active site
360102004442	phosphorylation site [posttranslational modification]
360102004443	intermolecular recognition site; other site
360102004444	dimerization interface [polypeptide binding]; other site
360102004445	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102004446	DNA binding residues [nucleotide binding]
360102004447	dimerization interface [polypeptide binding]; other site
360102004448	Acetyl-CoA hydrolase [Energy production and conversion]; Region: ACH1; COG0427
360102004449	Acetyl-CoA hydrolase/transferase N-terminal domain; Region: AcetylCoA_hydro; pfam02550
360102004450	Acetyl-CoA hydrolase/transferase C-terminal domain; Region: AcetylCoA_hyd_C; pfam13336
360102004451	FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2  has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal...; Region: FkbR2; cd03451
360102004452	putative active site [active]
360102004453	putative catalytic site [active]
360102004454	Citrate lyase beta subunit [Carbohydrate transport and metabolism]; Region: CitE; COG2301
360102004455	DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906
360102004456	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102004457	The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold; Region: PBP2_BudR; cd08451
360102004458	putative dimerization interface [polypeptide binding]; other site
360102004459	putative substrate binding pocket [chemical binding]; other site
360102004460	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102004461	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102004462	ATP binding site [chemical binding]; other site
360102004463	Walker B motif; other site
360102004464	transposase/IS protein; Provisional; Region: PRK09183
360102004465	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102004466	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102004467	DNA-binding interface [nucleotide binding]; DNA binding site
360102004468	Integrase core domain; Region: rve; pfam00665
360102004469	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102004470	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618
360102004471	2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most...; Region: PDC_hydrolase; cd01311
360102004472	active site
360102004473	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102004474	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102004475	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
360102004476	dimerization interface [polypeptide binding]; other site
360102004477	Na(+)-translocating NADH-quinone reductase subunit E; Provisional; Region: PRK12456
360102004478	Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]; Region: COG0436
360102004479	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
360102004480	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102004481	homodimer interface [polypeptide binding]; other site
360102004482	catalytic residue [active]
360102004483	L-asparagine permease; Provisional; Region: PRK15049
360102004484	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
360102004485	helix_turn_helix, Deoxyribose operon repressor; Region: HTH_DEOR; smart00420
360102004486	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
360102004487	hypothetical protein; Provisional; Region: PRK09989
360102004488	glutaminase; Reviewed; Region: PRK12356
360102004489	Glutaminase [Amino acid transport and metabolism]; Region: GlsA; COG2066
360102004490	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102004491	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102004492	High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism]; Region: FTR1; COG0672
360102004493	Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]; Region: Tpd; COG3470
360102004494	Predicted membrane protein [Function unknown]; Region: COG4393
360102004495	Predicted membrane protein (DUF2318); Region: DUF2318; pfam10080
360102004496	Uncharacterized conserved protein [Function unknown]; Region: COG3350
360102004497	ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]; Region: SalY; COG0577
360102004498	FtsX-like permease family; Region: FtsX; pfam02687
360102004499	ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]; Region: LolE; COG4591
360102004500	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
360102004501	FtsX-like permease family; Region: FtsX; pfam02687
360102004502	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
360102004503	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
360102004504	Walker A/P-loop; other site
360102004505	ATP binding site [chemical binding]; other site
360102004506	Q-loop/lid; other site
360102004507	ABC transporter signature motif; other site
360102004508	Walker B; other site
360102004509	D-loop; other site
360102004510	H-loop/switch region; other site
360102004511	TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a...; Region: TlpA_like_family; cd02966
360102004512	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
360102004513	catalytic residues [active]
360102004514	Cytochrome c553 [Energy production and conversion]; Region: COG2863
360102004515	Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]; Region: TehB; COG3615
360102004516	tellurite resistance protein TehB; Provisional; Region: PRK12335
360102004517	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102004518	S-adenosylmethionine binding site [chemical binding]; other site
360102004519	putative endopeptidase; Provisional; Region: PRK14576
360102004520	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
360102004521	A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity...; Region: APP_MetAP; cd01066
360102004522	active site
360102004523	outer membrane protein; Provisional; Region: hmsH; PRK14574
360102004524	outer membrane N-deacetylase; Provisional; Region: hmsF; PRK14581
360102004525	N-terminal putative catalytic polysaccharide deacetylase domain of bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, and similar proteins; Region: CE4_PgaB_5s; cd10964
360102004526	putative active site [active]
360102004527	putative metal binding site [ion binding]; other site
360102004528	N-glycosyltransferase; Provisional; Region: hmsR; PRK14583
360102004529	CESA_like is  the cellulose synthase superfamily; Region: CESA_like; cd06423
360102004530	DXD motif; other site
360102004531	hemin storage system protein; Provisional; Region: hmsS; PRK14584
360102004532	Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670
360102004533	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
360102004534	hypothetical protein; Provisional; Region: PRK10536
360102004535	Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; Region: PhoH; COG1702
360102004536	calcium/sodium:proton antiporter; Provisional; Region: PRK10599
360102004537	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
360102004538	nitrate/nitrite sensor protein NarX; Provisional; Region: PRK10600
360102004539	Type IV pili methyl-accepting chemotaxis transducer N-term; Region: PilJ; pfam13675
360102004540	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102004541	dimerization interface [polypeptide binding]; other site
360102004542	Histidine kinase; Region: HisKA_3; pfam07730
360102004543	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102004544	ATP binding site [chemical binding]; other site
360102004545	Mg2+ binding site [ion binding]; other site
360102004546	G-X-G motif; other site
360102004547	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
360102004548	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102004549	DNA-binding site [nucleotide binding]; DNA binding site
360102004550	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
360102004551	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102004552	homodimer interface [polypeptide binding]; other site
360102004553	catalytic residue [active]
360102004554	bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional; Region: PRK12381
360102004555	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
360102004556	inhibitor-cofactor binding pocket; inhibition site
360102004557	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102004558	catalytic residue [active]
360102004559	arginine succinyltransferase; Provisional; Region: PRK10456
360102004560	Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]; Region: AstA; COG3138
360102004561	succinylglutamic semialdehyde dehydrogenase; Region: arg_catab_astD; TIGR03240
360102004562	N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like; Region: ALDH_SGSD_AstD; cd07095
360102004563	NAD(P) binding site [chemical binding]; other site
360102004564	catalytic residues [active]
360102004565	succinylarginine dihydrolase; Provisional; Region: PRK13281
360102004566	Peptidase M14 Succinylglutamate desuccinylase (ASTE) subfamily; Region: M14_ASTE; cd03855
360102004567	Succinylglutamate desuccinylase / Aspartoacylase family; Region: AstE_AspA; pfam04952
360102004568	putative active site [active]
360102004569	Zn binding site [ion binding]; other site
360102004570	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
360102004571	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
360102004572	trimer interface [polypeptide binding]; other site
360102004573	eyelet of channel; other site
360102004574	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102004575	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102004576	DNA-binding interface [nucleotide binding]; DNA binding site
360102004577	Integrase core domain; Region: rve; pfam00665
360102004578	transposase/IS protein; Provisional; Region: PRK09183
360102004579	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102004580	Walker A motif; other site
360102004581	ATP binding site [chemical binding]; other site
360102004582	Walker B motif; other site
360102004583	Porin superfamily.  These outer membrane channels share a beta-barrel structure that differ in strand and shear number.  Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl17244
360102004584	N-formylglutamate amidohydrolase; Region: hutG_amidohyd; TIGR02017
360102004585	imidazolonepropionase; Validated; Region: PRK09356
360102004586	Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria; Region: Imidazolone-5PH; cd01296
360102004587	active site
360102004588	histidine utilization repressor, proteobacterial; Region: his_ut_repres; TIGR02018
360102004589	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102004590	DNA-binding site [nucleotide binding]; DNA binding site
360102004591	UTRA domain; Region: UTRA; pfam07702
360102004592	N-formimino-L-glutamate deiminase; Validated; Region: PRK09229
360102004593	Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the...; Region: Met_dep_hydrolase_E; cd01313
360102004594	active site
360102004595	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3758
360102004596	salicylate synthase; Region: salicyl_syn; TIGR03494
360102004597	chorismate binding enzyme; Region: Chorismate_bind; pfam00425
360102004598	Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the...; Region: cond_enzymes; cl09938
360102004599	active site
360102004600	Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the...; Region: cond_enzymes; cl09938
360102004601	active site
360102004602	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
360102004603	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
360102004604	NAD(P) binding site [chemical binding]; other site
360102004605	active site
360102004606	Zn-dependent hydrolases, including glyoxylases [General function prediction only]; Region: GloB; COG0491
360102004607	Coenzyme F390 synthetase [Coenzyme metabolism]; Region: PaaK; COG1541
360102004608	putative adenylate-forming enzyme; Region: aden_form_hyp; TIGR02304
360102004609	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
360102004610	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
360102004611	NAD(P) binding site [chemical binding]; other site
360102004612	active site
360102004613	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
360102004614	active site
360102004615	Glycosyl transferase family 21; Region: Glyco_transf_21; pfam13506
360102004616	This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the...; Region: GT1_Gtf_like; cd03784
360102004617	Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]; Region: COG1819
360102004618	active site
360102004619	TDP-binding site; other site
360102004620	acceptor substrate-binding pocket; other site
360102004621	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102004622	MULE transposase domain; Region: MULE; pfam10551
360102004623	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2849
360102004624	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
360102004625	Sel1-like repeats; Region: SEL1; smart00671
360102004626	Sel1-like repeats; Region: SEL1; smart00671
360102004627	Sel1-like repeats; Region: SEL1; smart00671
360102004628	Domain of unknown function (DUF4034); Region: DUF4034; pfam13226
360102004629	hypothetical protein; Provisional; Region: PRK09273
360102004630	Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Region: RpiB; COG0698
360102004631	Ribose-5-phosphate isomerase; Region: DUF3666; pfam12408
360102004632	Methyltransferase domain; Region: Methyltransf_12; pfam08242
360102004633	classical (c) SDRs; Region: SDR_c; cd05233
360102004634	3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed; Region: PRK12826
360102004635	NAD(P) binding site [chemical binding]; other site
360102004636	active site
360102004637	HEAT repeats; Region: HEAT_2; pfam13646
360102004638	Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated cyclic compounds; Region: Esterase_713_like-3; cd12810
360102004639	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
360102004640	catalytic site [active]
360102004641	Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]; Region: COG1917
360102004642	Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]; Region: COG0599
360102004643	heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386
360102004644	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102004645	dimerization interface [polypeptide binding]; other site
360102004646	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102004647	dimer interface [polypeptide binding]; other site
360102004648	phosphorylation site [posttranslational modification]
360102004649	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102004650	ATP binding site [chemical binding]; other site
360102004651	Mg2+ binding site [ion binding]; other site
360102004652	G-X-G motif; other site
360102004653	heavy metal response regulator; Region: cztR_silR_copR; TIGR01387
360102004654	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102004655	active site
360102004656	phosphorylation site [posttranslational modification]
360102004657	intermolecular recognition site; other site
360102004658	dimerization interface [polypeptide binding]; other site
360102004659	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102004660	DNA binding site [nucleotide binding]
360102004661	Hydrolases of the alpha/beta superfamily [General function prediction only]; Region: COG1073
360102004662	flavodoxin; Provisional; Region: PRK06934
360102004663	Domain of unknown function (DUF4405); Region: DUF4405; pfam14358
360102004664	Protein of unknown function (DUF4087); Region: DUF4087; pfam13316
360102004665	Esterase/lipase [Lipid metabolism]; Region: Aes; COG0657
360102004666	Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins; Region: RHOD_PspE2; cd01521
360102004667	active site residue [active]
360102004668	Integrase core domain; Region: rve; pfam00665
360102004669	Integrase core domain; Region: rve_3; pfam13683
360102004670	GTP-binding protein YchF; Reviewed; Region: PRK09601
360102004671	YchF GTPase; Region: YchF; cd01900
360102004672	G1 box; other site
360102004673	GTP/Mg2+ binding site [chemical binding]; other site
360102004674	Switch I region; other site
360102004675	G2 box; other site
360102004676	Switch II region; other site
360102004677	G3 box; other site
360102004678	G4 box; other site
360102004679	G5 box; other site
360102004680	TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the...; Region: TGS_YchF_C; cd04867
360102004681	Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462
360102004682	putative active site [active]
360102004683	catalytic residue [active]
360102004684	hypothetical protein; Provisional; Region: PRK10692
360102004685	ribose-phosphate pyrophosphokinase; Provisional; Region: PRK01259
360102004686	N-terminal domain of ribose phosphate pyrophosphokinase; Region: Pribosyltran_N; pfam13793
360102004687	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
360102004688	active site
360102004689	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional; Region: ipk; PRK00343
360102004690	GHMP kinases N terminal domain; Region: GHMP_kinases_N; pfam00288
360102004691	GHMP kinases C terminal; Region: GHMP_kinases_C; pfam08544
360102004692	Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]; Region: LolB; COG3017
360102004693	Outer membrane lipoprotein LolB; Region: LolB; pfam03550
360102004694	glutamyl-tRNA reductase; Reviewed; Region: hemA; PRK00045
360102004695	NADP-binding domain of glutamyl-tRNA reductase; Region: NAD_bind_Glutamyl_tRNA_reduct; cd05213
360102004696	tRNA; other site
360102004697	putative tRNA binding site [nucleotide binding]; other site
360102004698	putative NADP binding site [chemical binding]; other site
360102004699	Glutamyl-tRNAGlu reductase, dimerisation domain; Region: GlutR_dimer; pfam00745
360102004700	peptide chain release factor 1; Validated; Region: prfA; PRK00591
360102004701	This domain is found in peptide chain release factors; Region: PCRF; smart00937
360102004702	RF-1 domain; Region: RF-1; pfam00472
360102004703	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional; Region: PRK09328
360102004704	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
360102004705	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3094
360102004706	hypothetical protein; Provisional; Region: PRK10941
360102004707	Transglutaminase-like superfamily; Region: Transglut_core2; pfam13369
360102004708	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
360102004709	binding surface
360102004710	TPR motif; other site
360102004711	2-dehydro-3-deoxyphosphooctonate aldolase; Provisional; Region: PRK05198
360102004712	DAHP synthetase I family; Region: DAHP_synth_1; pfam00793
360102004713	Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042
360102004714	transposase/IS protein; Provisional; Region: PRK09183
360102004715	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102004716	Walker A motif; other site
360102004717	ATP binding site [chemical binding]; other site
360102004718	Walker B motif; other site
360102004719	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102004720	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102004721	DNA-binding interface [nucleotide binding]; DNA binding site
360102004722	Integrase core domain; Region: rve; pfam00665
360102004723	putative transporter; Provisional; Region: PRK11660
360102004724	Sulfate transporter N-terminal domain with GLY motif; Region: Sulfate_tra_GLY; pfam13792
360102004725	Sulfate transporter family; Region: Sulfate_transp; pfam00916
360102004726	Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]; Region: UgpQ; COG0584
360102004727	Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins; Region: GDPD_Rv2277c_like; cd08580
360102004728	putative active site [active]
360102004729	catalytic site [active]
360102004730	putative metal binding site [ion binding]; other site
360102004731	ABC-type uncharacterized transport system, periplasmic component [General function prediction only]; Region: COG4134
360102004732	hypothetical protein; Provisional; Region: PRK11622
360102004733	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
360102004734	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102004735	dimer interface [polypeptide binding]; other site
360102004736	conserved gate region; other site
360102004737	putative PBP binding loops; other site
360102004738	ABC-ATPase subunit interface; other site
360102004739	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102004740	dimer interface [polypeptide binding]; other site
360102004741	conserved gate region; other site
360102004742	putative PBP binding loops; other site
360102004743	ABC-ATPase subunit interface; other site
360102004744	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
360102004745	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102004746	ABC transporter signature motif; other site
360102004747	Walker B; other site
360102004748	D-loop; other site
360102004749	H-loop/switch region; other site
360102004750	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102004751	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
360102004752	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102004753	Walker A/P-loop; other site
360102004754	ATP binding site [chemical binding]; other site
360102004755	Q-loop/lid; other site
360102004756	Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]; Region: UgpQ; COG0584
360102004757	Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily; Region: PI-PLCc_GDPD_SF; cl14615
360102004758	active site
360102004759	catalytic site [active]
360102004760	Transcriptional regulators [Transcription]; Region: MarR; COG1846
360102004761	MarR family; Region: MarR_2; pfam12802
360102004762	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
360102004763	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
360102004764	putative hydrolase; Validated; Region: PRK09248
360102004765	Polymerase and Histidinol Phosphatase domain of Ycdx like; Region: PHP_HisPPase_Ycdx_like; cd07437
360102004766	active site
360102004767	Uncharacterized component of anaerobic dehydrogenases [General function prediction only]; Region: TorD; COG3381
360102004768	lipoprotein; Provisional; Region: PRK10598
360102004769	multidrug resistance protein MdtH; Provisional; Region: PRK11646
360102004770	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102004771	putative substrate translocation pore; other site
360102004772	ribosomal-protein-S5-alanine N-acetyltransferase; Provisional; Region: PRK10809
360102004773	Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670
360102004774	hypothetical protein; Provisional; Region: PRK11239
360102004775	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3132
360102004776	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
360102004777	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
360102004778	Uncharacterized membrane protein, putative virulence factor [General function prediction only]; Region: MviN; COG0728
360102004779	MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_MurJ_like; cd13123
360102004780	Hemolysin activation/secretion protein [Intracellular trafficking and secretion]; Region: FhaC; COG2831
360102004781	POTRA domain, ShlB-type; Region: POTRA_2; pfam08479
360102004782	Haemolysin secretion/activation protein ShlB/FhaC/HecB; Region: ShlB; pfam03865
360102004783	haemagglutination activity domain; Region: Haemagg_act; smart00912
360102004784	Large exoproteins involved in heme utilization or adhesion [Intracellular trafficking and secretion]; Region: FhaB; COG3210
360102004785	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102004786	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102004787	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102004788	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102004789	Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: ArgS; COG0018
360102004790	Arginyl tRNA synthetase N terminal dom; Region: Arg_tRNA_synt_N; smart01016
360102004791	catalytic core domain of arginyl-tRNA synthetases; Region: ArgRS_core; cd00671
360102004792	active site
360102004793	HIGH motif; other site
360102004794	KMSK motif region; other site
360102004795	Anticodon-binding domain of arginyl tRNA synthetases; Region: Anticodon_Ia_Arg; cd07956
360102004796	tRNA binding surface [nucleotide binding]; other site
360102004797	anticodon binding site; other site
360102004798	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_4; cd07268
360102004799	putative metal binding site [ion binding]; other site
360102004800	copper homeostasis protein CutC; Provisional; Region: PRK11572
360102004801	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102004802	S-adenosylmethionine binding site [chemical binding]; other site
360102004803	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102004804	S-adenosylmethionine binding site [chemical binding]; other site
360102004805	Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]; Region: COG3788
360102004806	hypothetical protein; Provisional; Region: PRK10302
360102004807	aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476
360102004808	EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317
360102004809	dimer interface [polypeptide binding]; other site
360102004810	anticodon binding site; other site
360102004811	Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of...; Region: AspRS_core; cd00777
360102004812	homodimer interface [polypeptide binding]; other site
360102004813	motif 1; other site
360102004814	active site
360102004815	motif 2; other site
360102004816	GAD domain; Region: GAD; pfam02938
360102004817	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
360102004818	active site
360102004819	motif 3; other site
360102004820	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_7; cd04664
360102004821	nudix motif; other site
360102004822	hypothetical protein; Validated; Region: PRK00110
360102004823	Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD...; Region: RuvC_resolvase; cd00529
360102004824	active site
360102004825	putative DNA-binding cleft [nucleotide binding]; other site
360102004826	dimer interface [polypeptide binding]; other site
360102004827	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102004828	Holliday junction DNA helicase RuvA; Reviewed; Region: ruvA; PRK00116
360102004829	RuvA N terminal domain; Region: RuvA_N; pfam01330
360102004830	RuvA, C-terminal domain; Region: RuvA_C; pfam07499
360102004831	Holliday junction DNA helicase RuvB; Reviewed; Region: ruvB; PRK00080
360102004832	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102004833	Walker A motif; other site
360102004834	ATP binding site [chemical binding]; other site
360102004835	Walker B motif; other site
360102004836	arginine finger; other site
360102004837	Holliday junction DNA helicase ruvB C-terminus; Region: RuvB_C; pfam05491
360102004838	ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108
360102004839	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102004840	ABC-ATPase subunit  interface; other site
360102004841	dimer interface [polypeptide binding]; other site
360102004842	putative PBP binding regions; other site
360102004843	high-affinity zinc transporter ATPase; Reviewed; Region: znuC; PRK09544
360102004844	ATP-binding cassette domain of the metal-type transporters; Region: ABC_Metallic_Cations; cd03235
360102004845	high-affinity zinc transporter periplasmic component; Reviewed; Region: znuA; PRK09545
360102004846	Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism; Region: ZnuA; cd01019
360102004847	metal binding site [ion binding]; metal-binding site
360102004848	putative peptidase; Provisional; Region: PRK11649
360102004849	Opacity-associated protein A N-terminal motif; Region: OapA_N; pfam08525
360102004850	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
360102004851	Peptidase family M23; Region: Peptidase_M23; pfam01551
360102004852	Bacterial lipid A biosynthesis acyltransferase; Region: Lip_A_acyltrans; pfam03279
360102004853	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984
360102004854	putative acyl-acceptor binding pocket; other site
360102004855	pyruvate kinase; Provisional; Region: PRK05826
360102004856	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl17342
360102004857	domain interfaces; other site
360102004858	active site
360102004859	DNA-binding transcriptional regulator HexR; Provisional; Region: PRK11302
360102004860	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
360102004861	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
360102004862	putative active site [active]
360102004863	glucose-6-phosphate 1-dehydrogenase; Validated; Region: PRK05722
360102004864	Glucose-6-phosphate dehydrogenase, NAD binding domain; Region: G6PD_N; pfam00479
360102004865	Glucose-6-phosphate dehydrogenase, C-terminal domain; Region: G6PD_C; pfam02781
360102004866	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase; Provisional; Region: PRK05718
360102004867	KDPG and KHG aldolase; Region: KDPG_aldolase; cd00452
360102004868	active site
360102004869	intersubunit interface [polypeptide binding]; other site
360102004870	catalytic residue [active]
360102004871	multidrug efflux system protein MdtJ; Provisional; Region: PRK10452
360102004872	multidrug efflux system protein MdtI; Provisional; Region: PRK10650
360102004873	This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function.  The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_2; cd06150
360102004874	homotrimer interaction site [polypeptide binding]; other site
360102004875	putative active site [active]
360102004876	Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]; Region: DinG; COG1199
360102004877	DEAD/DEAH box helicase; Region: DEAD; pfam00270
360102004878	Helicase C-terminal domain; Region: Helicase_C_2; pfam13307
360102004879	tRNA threonylcarbamoyl adenosine modification protein YeaZ; Region: T6A_YeaZ; TIGR03725
360102004880	Glycoprotease family; Region: Peptidase_M22; pfam00814
360102004881	Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]; Region: Slp; COG3065
360102004882	long-chain-fatty-acid--CoA ligase; Validated; Region: PRK08974
360102004883	Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD; Region: FC-FACS_FadD_like; cd05936
360102004884	acyl-activating enzyme (AAE) consensus motif; other site
360102004885	putative AMP binding site [chemical binding]; other site
360102004886	putative active site [active]
360102004887	putative CoA binding site [chemical binding]; other site
360102004888	ribonuclease D; Provisional; Region: PRK10829
360102004889	DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins; Region: RNaseD_exo; cd06142
360102004890	catalytic site [active]
360102004891	putative active site [active]
360102004892	putative substrate binding site [chemical binding]; other site
360102004893	HRDC domain; Region: HRDC; pfam00570
360102004894	cell division topological specificity factor MinE; Reviewed; Region: minE; PRK00296
360102004895	cell division inhibitor MinD; Provisional; Region: PRK10818
360102004896	Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal...; Region: MinD; cd02036
360102004897	Switch I; other site
360102004898	Switch II; other site
360102004899	septum formation inhibitor; Reviewed; Region: minC; PRK03511
360102004900	Septum formation inhibitor MinC, N-terminal domain; Region: MinC_N; pfam05209
360102004901	Septum formation inhibitor MinC, C-terminal domain; Region: MinC_C; pfam03775
360102004902	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3100
360102004903	lytic murein transglycosylase; Region: MltB_2; TIGR02283
360102004904	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
360102004905	N-acetyl-D-glucosamine binding site [chemical binding]; other site
360102004906	catalytic residue [active]
360102004907	hypothetical protein; Provisional; Region: PRK10691
360102004908	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179
360102004909	hypothetical protein; Provisional; Region: PRK05170
360102004910	Domain of unknown function (DUF3596); Region: DUF3596; pfam12167
360102004911	Integrase [DNA replication, recombination, and repair]; Region: XerC; COG0582
360102004912	phiCTX phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various phage and bacterial integrases, including those similar to phage integrases: Bordetella and...; Region: INT_phiCTX_C; cd01191
360102004913	Int/Topo IB signature motif; other site
360102004914	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102004915	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102004916	DNA-binding interface [nucleotide binding]; DNA binding site
360102004917	Integrase core domain; Region: rve; pfam00665
360102004918	transposase/IS protein; Provisional; Region: PRK09183
360102004919	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102004920	Walker A motif; other site
360102004921	ATP binding site [chemical binding]; other site
360102004922	Walker B motif; other site
360102004923	3-oxoacyl-(acyl carrier protein) synthase II; Provisional; Region: PRK14691
360102004924	Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]; Region: COG5492
360102004925	Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]; Region: COG5492
360102004926	Bacterial Ig-like domain (group 2); Region: Big_2; cl02708
360102004927	Bacteriophage related domain of unknown function; Region: DUF4128; pfam13554
360102004928	Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]; Region: COG5492
360102004929	Phage tail protein; Region: Phage_tail_3; pfam08813
360102004930	Domain of unknown function (DUF1789); Region: DUF1789; pfam08748
360102004931	Phage-related minor tail protein [Function unknown]; Region: COG5281
360102004932	Prophage tail length tape measure protein; Region: TMP_2; pfam06791
360102004933	Lambda phage tail tape-measure protein (Tape_meas_lam_C); Region: Tape_meas_lam_C; pfam09718
360102004934	Phage-related protein [Function unknown]; Region: COG4718
360102004935	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102004936	Phage-related protein [Function unknown]; Region: gp18; COG4672
360102004937	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains; Region: MPN_NLPC_P60; cd08073
360102004938	MPN+ (JAMM) motif; other site
360102004939	Zinc-binding site [ion binding]; other site
360102004940	NlpC/P60 family; Region: NLPC_P60; pfam00877
360102004941	Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; Region: Spr; COG0791
360102004942	C-type lectin (CTL)/C-type lectin-like (CTLD) domain; Region: CLECT; cl02432
360102004943	ligand binding surface [chemical binding]; other site
360102004944	Arc-like DNA binding domain; Region: Arc; pfam03869
360102004945	Prophage antirepressor [Transcription]; Region: COG3617
360102004946	BRO family, N-terminal domain; Region: Bro-N; smart01040
360102004947	Double zinc ribbon; Region: DZR; pfam12773
360102004948	Phage-related protein, tail component [Function unknown]; Region: COG4723
360102004949	Phage-related protein, tail component [Function unknown]; Region: COG4733
360102004950	Putative phage tail protein; Region: Phage-tail_3; pfam13550
360102004951	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063
360102004952	Interdomain contacts; other site
360102004953	Cytokine receptor motif; other site
360102004954	Domain of unknown function (DUF1983); Region: DUF1983; pfam09327
360102004955	Caudovirales tail fibre assembly protein; Region: Caudo_TAP; pfam02413
360102004956	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102004957	MULE transposase domain; Region: MULE; pfam10551
360102004958	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102004959	Major Facilitator Superfamily; Region: MFS_1; pfam07690
360102004960	Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]; Region: NifS; COG1104
360102004961	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
360102004962	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102004963	catalytic residue [active]
360102004964	disulfide bond formation protein B; Provisional; Region: PRK01749
360102004965	sodium/proton antiporter; Reviewed; Region: nhaB; PRK09547
360102004966	fatty acid metabolism regulator; Provisional; Region: PRK04984
360102004967	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102004968	DNA-binding site [nucleotide binding]; DNA binding site
360102004969	FadR C-terminal domain; Region: FadR_C; pfam07840
360102004970	Uncharacterized conserved protein [Function unknown]; Region: SpoVR; COG2719
360102004971	SpoVR family protein; Provisional; Region: PRK11767
360102004972	D-amino acid dehydrogenase small subunit; Validated; Region: PRK00711
360102004973	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
360102004974	hydroxyglutarate oxidase; Provisional; Region: PRK11728
360102004975	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102004976	putative substrate translocation pore; other site
360102004977	Major Facilitator Superfamily; Region: MFS_1; pfam07690
360102004978	Pirin-related protein [General function prediction only]; Region: COG1741
360102004979	Pirin; Region: Pirin; pfam02678
360102004980	Pirin C-terminal cupin domain; Region: Pirin_C; pfam05726
360102004981	LysR family transcriptional regulator; Provisional; Region: PRK14997
360102004982	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102004983	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_4; cd08473
360102004984	putative effector binding pocket; other site
360102004985	putative dimerization interface [polypeptide binding]; other site
360102004986	EamA-like transporter family; Region: EamA; pfam00892
360102004987	hypothetical protein; Provisional; Region: PRK05325
360102004988	PrkA family serine protein kinase; Provisional; Region: PRK15455
360102004989	AAA ATPase domain; Region: AAA_16; pfam13191
360102004990	Walker A motif; other site
360102004991	ATP binding site [chemical binding]; other site
360102004992	PrkA serine protein kinase C-terminal domain; Region: PrkA; pfam06798
360102004993	Outer membrane protein V [Cell envelope biogenesis, outer membrane]; Region: OmpV; COG3713
360102004994	D-hexose-6-phosphate epimerase-like; Region: D-hex-6-P-epi_like; cd09020
360102004995	active site
360102004996	phosphate binding residues; other site
360102004997	catalytic residues [active]
360102004998	glyceraldehyde-3-phosphate dehydrogenase A; Provisional; Region: gapA; PRK15425
360102004999	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Region: Gp_dh_N; smart00846
360102005000	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800
360102005001	methionine sulfoxide reductase B; Provisional; Region: PRK00222
360102005002	SelR domain; Region: SelR; pfam01641
360102005003	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3139
360102005004	Isochorismatase family; Region: Isochorismatase; pfam00857
360102005005	Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is...; Region: nicotinamidase; cd01011
360102005006	catalytic triad [active]
360102005007	metal binding site [ion binding]; metal-binding site
360102005008	conserved cis-peptide bond; other site
360102005009	Type I (cytosolic) bacterial L-asparaginase; Region: L-asparaginase_I; cd08963
360102005010	active site
360102005011	homodimer interface [polypeptide binding]; other site
360102005012	protease 4; Provisional; Region: PRK10949
360102005013	Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad; Region: S49_SppA_67K_type; cd07018
360102005014	tandem repeat interface [polypeptide binding]; other site
360102005015	oligomer interface [polypeptide binding]; other site
360102005016	active site residues [active]
360102005017	Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_SppA_1; cd07019
360102005018	tandem repeat interface [polypeptide binding]; other site
360102005019	oligomer interface [polypeptide binding]; other site
360102005020	active site residues [active]
360102005021	Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a...; Region: Arsenite_oxidase; cd02135
360102005022	putative FMN binding site [chemical binding]; other site
360102005023	selenophosphate synthetase; Provisional; Region: PRK00943
360102005024	Selenophosphate synthetase  (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The...; Region: SelD; cd02195
360102005025	dimerization interface [polypeptide binding]; other site
360102005026	putative ATP binding site [chemical binding]; other site
360102005027	DNA topoisomerase III; Provisional; Region: PRK07726
360102005028	TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving...; Region: TOPRIM_TopoIA_TopoIII; cd03362
360102005029	active site
360102005030	putative interdomain interaction site [polypeptide binding]; other site
360102005031	putative metal-binding site [ion binding]; other site
360102005032	putative nucleotide binding site [chemical binding]; other site
360102005033	DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA...; Region: TOP1Ac; cd00186
360102005034	domain I; other site
360102005035	DNA binding groove [nucleotide binding]
360102005036	phosphate binding site [ion binding]; other site
360102005037	domain II; other site
360102005038	domain III; other site
360102005039	nucleotide binding site [chemical binding]; other site
360102005040	catalytic site [active]
360102005041	domain IV; other site
360102005042	Protein of unknown function (DUF1496); Region: DUF1496; pfam07383
360102005043	The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic...; Region: MutT_pyrophosphohydrolase; cd03425
360102005044	active site
360102005045	8-oxo-dGMP binding site [chemical binding]; other site
360102005046	nudix motif; other site
360102005047	metal binding site [ion binding]; metal-binding site
360102005048	Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases; Region: ExoIII-like_AP-endo; cd09086
360102005049	putative catalytic site [active]
360102005050	putative phosphate binding site [ion binding]; other site
360102005051	active site
360102005052	metal binding site A [ion binding]; metal-binding site
360102005053	DNA binding site [nucleotide binding]
360102005054	putative AP binding site [nucleotide binding]; other site
360102005055	putative metal binding site B [ion binding]; other site
360102005056	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102005057	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102005058	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102005059	MULE transposase domain; Region: MULE; pfam10551
360102005060	formyltetrahydrofolate deformylase; Reviewed; Region: purU; PRK06027
360102005061	N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase); Region: ACT_F4HF-DF; cd04875
360102005062	Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Region: FMT_core_Formyl-FH4-Hydrolase_C; cd08648
360102005063	putative active site [active]
360102005064	putative substrate binding site [chemical binding]; other site
360102005065	putative cosubstrate binding site; other site
360102005066	catalytic site [active]
360102005067	SEC-C motif; Region: SEC-C; pfam02810
360102005068	hypothetical protein; Provisional; Region: PRK04233
360102005069	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102005070	active site
360102005071	response regulator of RpoS; Provisional; Region: PRK10693
360102005072	phosphorylation site [posttranslational modification]
360102005073	intermolecular recognition site; other site
360102005074	dimerization interface [polypeptide binding]; other site
360102005075	Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]; Region: Ugd; COG1004
360102005076	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
360102005077	UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984
360102005078	UDP binding domain; Region: UDPG_MGDP_dh_C; smart00984
360102005079	global DNA-binding transcriptional dual regulator H-NS; Provisional; Region: PRK10947
360102005080	Domain in histone-like proteins of HNS family; Region: HNS; smart00528
360102005081	thymidine kinase; Provisional; Region: PRK04296
360102005082	transposase/IS protein; Provisional; Region: PRK09183
360102005083	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102005084	Walker A motif; other site
360102005085	ATP binding site [chemical binding]; other site
360102005086	Walker B motif; other site
360102005087	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102005088	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102005089	DNA-binding interface [nucleotide binding]; DNA binding site
360102005090	Integrase core domain; Region: rve; pfam00665
360102005091	bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional; Region: PRK13805
360102005092	Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like; Region: ALDH_F20_ACDH; cd07122
360102005093	putative catalytic cysteine [active]
360102005094	C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD); Region: AAD_C; cd08178
360102005095	putative active site [active]
360102005096	metal binding site [ion binding]; metal-binding site
360102005097	hypothetical protein; Provisional; Region: PRK11111
360102005098	oligopeptide ABC transporter substrate-binding protein OppA; Provisional; Region: PRK15104
360102005099	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
360102005100	peptide binding site [polypeptide binding]; other site
360102005101	oligopeptide transporter permease; Reviewed; Region: oppB; PRK09471
360102005102	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102005103	dimer interface [polypeptide binding]; other site
360102005104	conserved gate region; other site
360102005105	putative PBP binding loops; other site
360102005106	ABC-ATPase subunit interface; other site
360102005107	oligopeptide ABC transporter permease OppC; Provisional; Region: PRK15406
360102005108	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
360102005109	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102005110	dimer interface [polypeptide binding]; other site
360102005111	conserved gate region; other site
360102005112	ABC-ATPase subunit interface; other site
360102005113	oligopeptide transporter ATP-binding component; Provisional; Region: oppD; PRK09473
360102005114	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102005115	Walker A/P-loop; other site
360102005116	ATP binding site [chemical binding]; other site
360102005117	Q-loop/lid; other site
360102005118	ABC transporter signature motif; other site
360102005119	Walker B; other site
360102005120	D-loop; other site
360102005121	H-loop/switch region; other site
360102005122	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Region: oligo_HPY; TIGR01727
360102005123	oligopeptide ABC transporter ATP-binding protein OppF; Provisional; Region: PRK15079
360102005124	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102005125	Walker A/P-loop; other site
360102005126	ATP binding site [chemical binding]; other site
360102005127	Q-loop/lid; other site
360102005128	ABC transporter signature motif; other site
360102005129	Walker B; other site
360102005130	D-loop; other site
360102005131	H-loop/switch region; other site
360102005132	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Region: oligo_HPY; TIGR01727
360102005133	dsDNA-mimic protein; Reviewed; Region: PRK05094
360102005134	cardiolipin synthetase; Reviewed; Region: cls; PRK01642
360102005135	Phospholipase_D-nuclease N-terminal; Region: PLDc_N; pfam13396
360102005136	Catalytic domain, repeat 1, of Escherichia coli cardiolipin synthase and similar proteins; Region: PLDc_EcCLS_like_1; cd09152
360102005137	putative active site [active]
360102005138	catalytic site [active]
360102005139	Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase and similar proteins; Region: PLDc_EcCLS_like_2; cd09158
360102005140	putative active site [active]
360102005141	catalytic site [active]
360102005142	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl17254
360102005143	Transcription factor zinc-finger; Region: zf-TFIIB; cl01565
360102005144	YciI-like protein; Reviewed; Region: PRK11370
360102005145	transport protein TonB; Provisional; Region: PRK10819
360102005146	Gram-negative bacterial tonB protein; Region: TonB; pfam03544
360102005147	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102005148	MULE transposase domain; Region: MULE; pfam10551
360102005149	Brown fat-inducible thioesterase (BFIT).  Brain acyl-CoA hydrolase (BACH).  These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis; Region: BFIT_BACH; cd03442
360102005150	intracellular septation protein A; Reviewed; Region: PRK00259
360102005151	Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]; Region: SUL1; COG0659
360102005152	Sulfate transporter N-terminal domain with GLY motif; Region: Sulfate_tra_GLY; pfam13792
360102005153	Sulfate transporter family; Region: Sulfate_transp; pfam00916
360102005154	Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]; Region: SUL1; COG0659
360102005155	Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042
360102005156	hypothetical protein; Provisional; Region: PRK02868
360102005157	outer membrane protein W; Provisional; Region: PRK10959
360102005158	Predicted periplasmic or secreted lipoprotein [General function prediction only]; Region: OsmY; COG2823
360102005159	BON domain; Region: BON; pfam04972
360102005160	tryptophan synthase alpha subunit; Provisional; Region: trpA; CHL00200
360102005161	Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both...; Region: Tryptophan_synthase_alpha; cd04724
360102005162	substrate binding site [chemical binding]; other site
360102005163	active site
360102005164	catalytic residues [active]
360102005165	heterodimer interface [polypeptide binding]; other site
360102005166	tryptophan synthase, beta subunit; Region: trpB; TIGR00263
360102005167	Tryptophan synthase-beta:  Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to...; Region: Trp-synth_B; cd06446
360102005168	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102005169	catalytic residue [active]
360102005170	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional; Region: PRK09427
360102005171	Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the...; Region: IGPS; cd00331
360102005172	active site
360102005173	ribulose/triose binding site [chemical binding]; other site
360102005174	phosphate binding site [ion binding]; other site
360102005175	substrate (anthranilate) binding pocket [chemical binding]; other site
360102005176	product (indole) binding pocket [chemical binding]; other site
360102005177	Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are...; Region: PRAI; cd00405
360102005178	active site
360102005179	anthranilate phosphoribosyltransferase; Provisional; Region: trpD; PRK00188
360102005180	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
360102005181	Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591
360102005182	Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase; Region: GATase1_Anthranilate_Synthase; cd01743
360102005183	Glutamine amidotransferase class-I; Region: GATase; pfam00117
360102005184	glutamine binding [chemical binding]; other site
360102005185	catalytic triad [active]
360102005186	anthranilate synthase component I; Provisional; Region: PRK13564
360102005187	Anthranilate synthase component I, N terminal region; Region: Anth_synt_I_N; pfam04715
360102005188	chorismate binding enzyme; Region: Chorismate_bind; pfam00425
360102005189	Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]; Region: COG0613
360102005190	Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound; Region: PHP_HisPPase_AMP; cd07438
360102005191	active site
360102005192	Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound; Region: PHP_HisPPase_AMP; cd07438
360102005193	hypothetical protein; Provisional; Region: PRK11630
360102005194	23S rRNA pseudouridylate synthase B; Provisional; Region: PRK10700
360102005195	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
360102005196	RNA binding surface [nucleotide binding]; other site
360102005197	Pseudouridine synthase, Escherichia coli RluB like; Region: PseudoU_synth_RluB; cd02556
360102005198	probable active site [active]
360102005199	ATP:corrinoid adenosyltransferase [Coenzyme metabolism]; Region: BtuR; COG2109
360102005200	Cob(I)alamin adenosyltransferase N terminal; Region: Co_AT_N; pfam12557
360102005201	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer; Region: CobA_CobO_BtuR; cd00561
360102005202	homodimer interface [polypeptide binding]; other site
360102005203	Walker A motif; other site
360102005204	ATP binding site [chemical binding]; other site
360102005205	hydroxycobalamin binding site [chemical binding]; other site
360102005206	Walker B motif; other site
360102005207	putative oxoacyl-(acyl carrier protein) reductase; Provisional; Region: PRK08945
360102005208	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
360102005209	NAD(P) binding site [chemical binding]; other site
360102005210	active site
360102005211	Peptidase family S49 N-terminal; Region: Peptidase_S49_N; pfam08496
360102005212	putative inner membrane peptidase; Provisional; Region: PRK11778
360102005213	Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023
360102005214	tandem repeat interface [polypeptide binding]; other site
360102005215	oligomer interface [polypeptide binding]; other site
360102005216	active site residues [active]
360102005217	hypothetical protein; Provisional; Region: PRK11037
360102005218	DNA topoisomerase I subunit omega; Validated; Region: PRK07561
360102005219	TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I.   Type IA DNA topoisomerases remove (relax) negative supercoils in the...; Region: TOPRIM_TopoIA_TopoI; cd03363
360102005220	active site
360102005221	interdomain interaction site; other site
360102005222	putative metal-binding site [ion binding]; other site
360102005223	nucleotide binding site [chemical binding]; other site
360102005224	DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA...; Region: TOP1Ac; cd00186
360102005225	domain I; other site
360102005226	DNA binding groove [nucleotide binding]
360102005227	phosphate binding site [ion binding]; other site
360102005228	domain II; other site
360102005229	domain III; other site
360102005230	nucleotide binding site [chemical binding]; other site
360102005231	catalytic site [active]
360102005232	domain IV; other site
360102005233	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
360102005234	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
360102005235	Topoisomerase I zinc-ribbon-like; Region: Topo_Zn_Ribbon; pfam08272
360102005236	Topoisomerase I zinc-ribbon-like; Region: Topo_Zn_Ribbon; pfam08272
360102005237	transcriptional regulator CysB; Reviewed; Region: cysB; PRK12681
360102005238	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102005239	The C-terminal substrate domain of LysR-type transcriptional regulator CysB contains type 2 periplasmic binding fold; Region: PBP2_CysB; cd08443
360102005240	substrate binding site [chemical binding]; other site
360102005241	putative dimerization interface [polypeptide binding]; other site
360102005242	aconitate hydratase; Validated; Region: PRK09277
360102005243	Aconitase A catalytic domain; Region: AcnA_IRP; cd01586
360102005244	substrate binding site [chemical binding]; other site
360102005245	ligand binding site [chemical binding]; other site
360102005246	Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group...; Region: AcnA_IRP_Swivel; cd01580
360102005247	substrate binding site [chemical binding]; other site
360102005248	GTP cyclohydrolase II (RibA).  GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cd00641
360102005249	dimerization interface [polypeptide binding]; other site
360102005250	active site
360102005251	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
360102005252	PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cd01610
360102005253	active site
360102005254	Predicted membrane protein [Function unknown]; Region: COG3771
360102005255	Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]; Region: COG2956
360102005256	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
360102005257	TPR motif; other site
360102005258	binding surface
360102005259	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
360102005260	binding surface
360102005261	TPR motif; other site
360102005262	Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase...; Region: OMP_decarboxylase_like; cd04725
360102005263	active site
360102005264	dimer interface [polypeptide binding]; other site
360102005265	translation initiation factor Sui1; Validated; Region: PRK06824
360102005266	Homologs of eIF1/SUI1 including Escherichia coli YciH; Region: YciH_like; cd11567
360102005267	putative rRNA binding site [nucleotide binding]; other site
360102005268	lipoprotein; Provisional; Region: PRK10540
360102005269	L-ribulose-5-phosphate 4-epimerase; Reviewed; Region: araD; PRK08193
360102005270	Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II); Region: Aldolase_II; cd00398
360102005271	intersubunit interface [polypeptide binding]; other site
360102005272	active site
360102005273	Zn2+ binding site [ion binding]; other site
360102005274	Uncharacterized conserved protein [Function unknown]; Region: COG5460
360102005275	Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea; Region: Transaldolase_FSA; cd00956
360102005276	active site
360102005277	intersubunit interactions; other site
360102005278	catalytic residue [active]
360102005279	Uncharacterized small protein [Function unknown]; Region: COG2879
360102005280	carbon starvation protein A; Provisional; Region: PRK15015
360102005281	Carbon starvation protein CstA; Region: CstA; pfam02554
360102005282	C-terminal domain on CstA (DUF4161); Region: DUF4161; pfam13722
360102005283	exoribonuclease II; Provisional; Region: PRK05054
360102005284	Ribonuclease B OB domain; Region: OB_RNB; pfam08206
360102005285	RNB domain; Region: RNB; pfam00773
360102005286	S1 RNA binding domain; Region: S1; pfam00575
360102005287	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
360102005288	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102005289	putative substrate translocation pore; other site
360102005290	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
360102005291	Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs; Region: Gne_like_SDR_e; cd05238
360102005292	putative NAD(P) binding site [chemical binding]; other site
360102005293	active site
360102005294	putative substrate binding site [chemical binding]; other site
360102005295	endonuclease III; Provisional; Region: PRK10702
360102005296	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
360102005297	minor groove reading motif; other site
360102005298	helix-hairpin-helix signature motif; other site
360102005299	substrate binding pocket [chemical binding]; other site
360102005300	active site
360102005301	iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3); Region: FES; smart00525
360102005302	electron transport complex RsxE subunit; Provisional; Region: PRK12405
360102005303	electron transport complex protein RnfG; Validated; Region: PRK01908
360102005304	electron transport complex protein RnfD; Reviewed; Region: rnfD; PRK00816
360102005305	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
360102005306	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102005307	GyrI-like small molecule binding domain; Region: GyrI-like; pfam06445
360102005308	Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]; Region: RnfC; COG4656
360102005309	SLBB domain; Region: SLBB; pfam10531
360102005310	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
360102005311	electron transport complex protein RnfB; Provisional; Region: PRK05113
360102005312	Putative Fe-S cluster; Region: FeS; pfam04060
360102005313	4Fe-4S binding domain; Region: Fer4; pfam00037
360102005314	electron transport complex protein RsxA; Provisional; Region: PRK05151
360102005315	Protein of unknown function (DUF2569); Region: DUF2569; pfam10754
360102005316	Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic); Region: Peptidase_C39_like; cd02259
360102005317	putative active site [active]
360102005318	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102005319	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102005320	Walker A/P-loop; other site
360102005321	ATP binding site [chemical binding]; other site
360102005322	Q-loop/lid; other site
360102005323	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102005324	Walker B; other site
360102005325	D-loop; other site
360102005326	H-loop/switch region; other site
360102005327	type I secretion membrane fusion protein, HlyD family; Region: type_I_hlyD; TIGR01843
360102005328	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102005329	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102005330	A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases.  Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine...; Region: Peptidase_C39_likeA; cd02417
360102005331	type I secretion system ABC transporter, HlyB family; Region: type_I_sec_HlyB; TIGR01846
360102005332	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102005333	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102005334	Walker A/P-loop; other site
360102005335	ATP binding site [chemical binding]; other site
360102005336	Q-loop/lid; other site
360102005337	ABC transporter signature motif; other site
360102005338	Walker B; other site
360102005339	D-loop; other site
360102005340	H-loop/switch region; other site
360102005341	L-arabinose isomerase; Provisional; Region: PRK02929
360102005342	L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon...; Region: L-arabinose_isomerase; cd03557
360102005343	putative hexamer (dimer of trimers) interface [polypeptide binding]; other site
360102005344	trimer interface [polypeptide binding]; other site
360102005345	putative substrate binding site [chemical binding]; other site
360102005346	putative metal binding site [ion binding]; other site
360102005347	ribulokinase; Provisional; Region: PRK04123
360102005348	Ribulokinases; belongs to the FGGY family of carbohydrate kinases; Region: FGGY_RBK; cd07781
360102005349	N- and C-terminal domain interface [polypeptide binding]; other site
360102005350	active site
360102005351	MgATP binding site [chemical binding]; other site
360102005352	catalytic site [active]
360102005353	metal binding site [ion binding]; metal-binding site
360102005354	carbohydrate binding site [chemical binding]; other site
360102005355	homodimer interface [polypeptide binding]; other site
360102005356	Periplasmic binding proteins and sugar binding domain of LacI family; Region: Peripla_BP_1; pfam00532
360102005357	Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily; Region: PBP1_arabinose_binding; cd01540
360102005358	ligand binding site [chemical binding]; other site
360102005359	L-arabinose transporter ATP-binding protein; Provisional; Region: araG; PRK11288
360102005360	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102005361	Walker A/P-loop; other site
360102005362	ATP binding site [chemical binding]; other site
360102005363	Q-loop/lid; other site
360102005364	ABC transporter signature motif; other site
360102005365	Walker B; other site
360102005366	D-loop; other site
360102005367	H-loop/switch region; other site
360102005368	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102005369	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102005370	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102005371	TM-ABC transporter signature motif; other site
360102005372	DNA-binding transcriptional regulator AraC; Provisional; Region: PRK10572
360102005373	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
360102005374	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102005375	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102005376	putative oxidoreductase; Provisional; Region: PRK11579
360102005377	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
360102005378	Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; pfam02894
360102005379	Predicted Na+-dependent transporter [General function prediction only]; Region: COG0385
360102005380	SBF-like CPA transporter family (DUF4137); Region: DUF4137; pfam13593
360102005381	Bacterial protein of unknown function (DUF945); Region: DUF945; pfam06097
360102005382	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5339
360102005383	Alpha-Mannosidase Binding Domain of Atg19/34; Region: ABD; cl15429
360102005384	mannose-6-phosphate isomerase; Provisional; Region: PRK15131
360102005385	Alpha-Mannosidase Binding Domain of Atg19/34; Region: ABD; cl15429
360102005386	fumarate hydratase; Reviewed; Region: fumC; PRK00485
360102005387	Class II fumarases; Region: Fumarase_classII; cd01362
360102005388	active site
360102005389	tetramer interface [polypeptide binding]; other site
360102005390	DNA replication terminus site-binding protein; Region: rep_term_tus; TIGR02648
360102005391	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
360102005392	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102005393	putative substrate translocation pore; other site
360102005394	DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986
360102005395	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102005396	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
360102005397	dimerization interface [polypeptide binding]; other site
360102005398	substrate binding pocket [chemical binding]; other site
360102005399	Iron dependent repressor, N-terminal DNA binding domain; Region: Fe_dep_repress; pfam01325
360102005400	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
360102005401	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
360102005402	nucleotide binding site [chemical binding]; other site
360102005403	putative dithiobiotin synthetase; Provisional; Region: PRK12374
360102005404	AAA domain; Region: AAA_26; pfam13500
360102005405	Transcriptional regulators [Transcription]; Region: PurR; COG1609
360102005406	Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism; Region: PBP1_GalS_like; cd06270
360102005407	ligand binding site [chemical binding]; other site
360102005408	dimerization interface (closed form) [polypeptide binding]; other site
360102005409	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cl17432
360102005410	transposase/IS protein; Provisional; Region: PRK09183
360102005411	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102005412	Walker A motif; other site
360102005413	ATP binding site [chemical binding]; other site
360102005414	Walker B motif; other site
360102005415	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102005416	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102005417	DNA-binding interface [nucleotide binding]; DNA binding site
360102005418	Integrase core domain; Region: rve; pfam00665
360102005419	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715
360102005420	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
360102005421	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102005422	dimer interface [polypeptide binding]; other site
360102005423	conserved gate region; other site
360102005424	putative PBP binding loops; other site
360102005425	ABC-ATPase subunit interface; other site
360102005426	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
360102005427	Walker A/P-loop; other site
360102005428	ATP binding site [chemical binding]; other site
360102005429	ABC transporter; Region: ABC_tran; pfam00005
360102005430	Q-loop/lid; other site
360102005431	ABC transporter signature motif; other site
360102005432	AMP nucleosidase; Provisional; Region: PRK08292
360102005433	Bacterial AMP nucleoside phosphorylase N-terminus; Region: AMNp_N; pfam10423
360102005434	Nucleoside phosphorylase [Nucleotide transport and metabolism]; Region: Pfs; COG0775
360102005435	Protein of unknown function (DUF1602); Region: DUF1602; pfam07673
360102005436	ribonuclease E; Reviewed; Region: rne; PRK10811
360102005437	Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]; Region: SrfB; COG4457
360102005438	Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]; Region: SrfC; COG4458
360102005439	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cl17170
360102005440	G1 box; other site
360102005441	GTP/Mg2+ binding site [chemical binding]; other site
360102005442	G2 box; other site
360102005443	Switch I region; other site
360102005444	G3 box; other site
360102005445	Switch II region; other site
360102005446	G4 box; other site
360102005447	Protein of unknown function (DUF1460); Region: DUF1460; pfam07313
360102005448	acetolactate synthase catalytic subunit; Validated; Region: PRK08155
360102005449	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
360102005450	PYR/PP interface [polypeptide binding]; other site
360102005451	dimer interface [polypeptide binding]; other site
360102005452	TPP binding site [chemical binding]; other site
360102005453	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
360102005454	Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the...; Region: TPP_AHAS; cd02015
360102005455	TPP-binding site [chemical binding]; other site
360102005456	dimer interface [polypeptide binding]; other site
360102005457	Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]; Region: IlvH; COG0440
360102005458	N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); Region: ACT_AHAS; cd04878
360102005459	putative valine binding site [chemical binding]; other site
360102005460	dimer interface [polypeptide binding]; other site
360102005461	dUMP phosphatase; Provisional; Region: PRK09449
360102005462	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102005463	motif II; other site
360102005464	tellurite resistance protein terB; Region: terB; cd07176
360102005465	putative metal binding site [ion binding]; other site
360102005466	Domain of unknown function (DUF4016); Region: DUF4016; pfam13208
360102005467	alkaline phosphatase; Provisional; Region: PRK10518
360102005468	Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH; Region: alkPPc; cd00016
360102005469	dimer interface [polypeptide binding]; other site
360102005470	active site
360102005471	O-6-alkylguanine-DNA:cysteine-protein methyltransferase; Provisional; Region: PRK10286
360102005472	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; Region: Methyltransf_1N; pfam02870
360102005473	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
360102005474	DNA binding site [nucleotide binding]
360102005475	active site
360102005476	fumarate/nitrate reduction transcriptional regulator; Provisional; Region: PRK11161
360102005477	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
360102005478	ligand binding site [chemical binding]; other site
360102005479	flexible hinge region; other site
360102005480	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092
360102005481	putative switch regulator; other site
360102005482	non-specific DNA interactions [nucleotide binding]; other site
360102005483	DNA binding site [nucleotide binding]
360102005484	sequence specific DNA binding site [nucleotide binding]; other site
360102005485	putative cAMP binding site [chemical binding]; other site
360102005486	universal stress protein UspE; Provisional; Region: PRK11175
360102005487	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
360102005488	Ligand Binding Site [chemical binding]; other site
360102005489	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
360102005490	Ligand Binding Site [chemical binding]; other site
360102005491	pyridine nucleotide transhydrogenase; Provisional; Region: pntB; PRK09444
360102005492	NAD(P) transhydrogenase beta subunit; Region: PNTB; pfam02233
360102005493	NAD(P) transhydrogenase subunit alpha; Provisional; Region: pntA; PRK09424
360102005494	Rubrum transdehydrogenase NAD-binding and catalytic domains; Region: Rubrum_tdh; cd05304
360102005495	ligand binding site [chemical binding]; other site
360102005496	homodimer interface [polypeptide binding]; other site
360102005497	NAD(P) binding site [chemical binding]; other site
360102005498	trimer interface B [polypeptide binding]; other site
360102005499	trimer interface A [polypeptide binding]; other site
360102005500	Domain of unknown function (DUF3814); Region: DUF3814; pfam12769
360102005501	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
360102005502	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
360102005503	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
360102005504	transporter, basic amino acid/polyamine antiporter (APA) family; Region: 2A0302; TIGR00905
360102005505	DNA-binding transcriptional regulator RstA; Provisional; Region: PRK10701
360102005506	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102005507	active site
360102005508	phosphorylation site [posttranslational modification]
360102005509	intermolecular recognition site; other site
360102005510	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102005511	DNA binding site [nucleotide binding]
360102005512	sensor protein RstB; Provisional; Region: PRK10604
360102005513	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102005514	dimerization interface [polypeptide binding]; other site
360102005515	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102005516	dimer interface [polypeptide binding]; other site
360102005517	phosphorylation site [posttranslational modification]
360102005518	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102005519	ATP binding site [chemical binding]; other site
360102005520	Mg2+ binding site [ion binding]; other site
360102005521	G-X-G motif; other site
360102005522	Zn-dependent carboxypeptidase [Amino acid transport and metabolism]; Region: COG2317
360102005523	Peptidase family M32 includes thermostable carboxypeptidases TaqCP and PfuCP; Region: M32_Taq; cd06460
360102005524	active site
360102005525	Zn binding site [ion binding]; other site
360102005526	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102005527	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
360102005528	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
360102005529	Anthrax toxin LF subunit; Region: Anthrax_toxA; pfam03497
360102005530	Transposase; Region: DEDD_Tnp_IS110; pfam01548
360102005531	hypothetical protein; Provisional; Region: PRK03757
360102005532	Cytochrome B561 [Energy production and conversion]; Region: CybB; COG3038
360102005533	V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]; Region: COG3591
360102005534	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
360102005535	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
360102005536	non-specific DNA binding site [nucleotide binding]; other site
360102005537	salt bridge; other site
360102005538	sequence-specific DNA binding site [nucleotide binding]; other site
360102005539	Oligonucleotide/oligosaccharide-binding (OB)-fold; Region: OB_NTP_bind; pfam07717
360102005540	Domain of unknown function (DUF3418); Region: DUF3418; pfam11898
360102005541	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102005542	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102005543	DNA-binding interface [nucleotide binding]; DNA binding site
360102005544	Integrase core domain; Region: rve; pfam00665
360102005545	transposase/IS protein; Provisional; Region: PRK09183
360102005546	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102005547	Walker A motif; other site
360102005548	ATP binding site [chemical binding]; other site
360102005549	Walker B motif; other site
360102005550	DEAD-like helicases superfamily; Region: DEXDc; smart00487
360102005551	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
360102005552	ATP binding site [chemical binding]; other site
360102005553	putative Mg++ binding site [ion binding]; other site
360102005554	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102005555	nucleotide binding region [chemical binding]; other site
360102005556	ATP-binding site [chemical binding]; other site
360102005557	Helicase associated domain (HA2); Region: HA2; pfam04408
360102005558	Oligonucleotide/oligosaccharide-binding (OB)-fold; Region: OB_NTP_bind; pfam07717
360102005559	azoreductase; Reviewed; Region: PRK00170
360102005560	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
360102005561	Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]; Region: DeoR; COG2390
360102005562	MarR family; Region: MarR_2; pfam12802
360102005563	Putative sugar-binding domain; Region: Sugar-bind; pfam04198
360102005564	Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]; Region: MtlD; COG0246
360102005565	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
360102005566	Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125
360102005567	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3784
360102005568	YnbE-like lipoprotein; Region: Lipoprotein_19; pfam13617
360102005569	hypothetical protein; Provisional; Region: PRK10695
360102005570	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
360102005571	D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; Region: LDH_like_2; cd12183
360102005572	putative ligand binding site [chemical binding]; other site
360102005573	putative NAD binding site [chemical binding]; other site
360102005574	catalytic site [active]
360102005575	heat-inducible protein; Provisional; Region: PRK10449
360102005576	Putative hemolysin [General function prediction only]; Region: Hlx; COG3042
360102005577	Domain of unknown function (DUF333); Region: DUF333; pfam03891
360102005578	putative Mg(2+) transport ATPase; Provisional; Region: PRK09977
360102005579	MgtC family; Region: MgtC; pfam02308
360102005580	Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]; Region: EmrE; COG2076
360102005581	pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; Region: pyruv_ox_red; TIGR02176
360102005582	Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like; cd07034
360102005583	dimer interface [polypeptide binding]; other site
360102005584	PYR/PP interface [polypeptide binding]; other site
360102005585	TPP binding site [chemical binding]; other site
360102005586	substrate binding site [chemical binding]; other site
360102005587	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit [Energy production and conversion]; Region: PorG; COG1014
360102005588	Domain of unknown function; Region: EKR; pfam10371
360102005589	4Fe-4S binding domain; Region: Fer4_6; pfam12837
360102005590	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
360102005591	Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This...; Region: TPP_PFOR_PNO; cd03377
360102005592	TPP-binding site [chemical binding]; other site
360102005593	dimer interface [polypeptide binding]; other site
360102005594	tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional; Region: PRK10696
360102005595	This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily; Region: Alpha_ANH_like_II; cd01993
360102005596	Ligand Binding Site [chemical binding]; other site
360102005597	Esterase/lipase [Lipid metabolism]; Region: Aes; COG0657
360102005598	Esterases and lipases (includes fungal lipases, cholinesterases, etc.)  These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cd00312
360102005599	substrate binding pocket [chemical binding]; other site
360102005600	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
360102005601	Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789
360102005602	Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators; Region: HTH_MerR-like; cd00592
360102005603	DNA binding residues [nucleotide binding]
360102005604	dimer interface [polypeptide binding]; other site
360102005605	Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]; Region: CorA; COG0598
360102005606	Salmonella typhimurium Zn2+ transporter ZntB-like subgroup; Region: ZntB-like_1; cd12833
360102005607	Cl binding site [ion binding]; other site
360102005608	oligomer interface [polypeptide binding]; other site
360102005609	oligopeptide ABC transporter substrate-binding protein OppA; Provisional; Region: PRK15104
360102005610	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
360102005611	peptide binding site [polypeptide binding]; other site
360102005612	Predicted carboxypeptidase [Amino acid transport and metabolism]; Region: COG2866
360102005613	Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A and related proteins; Region: M14_MpaA_like; cd06904
360102005614	putative active site [active]
360102005615	Zn binding site [ion binding]; other site
360102005616	L-Ala-D/L-Glu epimerase; Provisional; Region: PRK15129
360102005617	L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of...; Region: L-Ala-DL-Glu_epimerase; cd03319
360102005618	active site
360102005619	Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a...; Region: PRX_Atyp2cys; cd03014
360102005620	dimer interface [polypeptide binding]; other site
360102005621	catalytic triad [active]
360102005622	peroxidatic and resolving cysteines [active]
360102005623	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102005624	DNA-binding transcriptional regulator TyrR; Provisional; Region: PRK10820
360102005625	ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141
360102005626	PAS domain; Region: PAS; smart00091
360102005627	putative active site [active]
360102005628	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102005629	Walker A motif; other site
360102005630	ATP binding site [chemical binding]; other site
360102005631	Walker B motif; other site
360102005632	arginine finger; other site
360102005633	Uncharacterized conserved protein [Function unknown]; Region: COG5642
360102005634	putative toxin-antitoxin system antitoxin component, TIGR02293 family; Region: TAS_TIGR02293
360102005635	Uncharacterized conserved protein [Function unknown]; Region: COG5654
360102005636	hypothetical protein; Provisional; Region: PRK05415
360102005637	Domain of unknown function (DUF697); Region: DUF697; cl12064
360102005638	Predicted ATPase [General function prediction only]; Region: COG3106
360102005639	Phage shock protein PspD (Phageshock_PspD); Region: Phageshock_PspD; pfam09584
360102005640	DNA-binding transcriptional activator PspC; Provisional; Region: PRK10697
360102005641	phage shock protein C; Region: phageshock_pspC; TIGR02978
360102005642	phage shock protein B; Provisional; Region: pspB; PRK09458
360102005643	phage shock protein PspA; Provisional; Region: PRK10698
360102005644	phage shock protein operon transcriptional activator; Provisional; Region: pspF; PRK11608
360102005645	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102005646	Walker A motif; other site
360102005647	ATP binding site [chemical binding]; other site
360102005648	Walker B motif; other site
360102005649	arginine finger; other site
360102005650	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
360102005651	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102005652	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
360102005653	The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold; Region: PBP2_DppA_like; cd08493
360102005654	peptide binding site [polypeptide binding]; other site
360102005655	antimicrobial peptide ABC transporter permease SapB; Provisional; Region: PRK15110
360102005656	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102005657	dimer interface [polypeptide binding]; other site
360102005658	conserved gate region; other site
360102005659	putative PBP binding loops; other site
360102005660	ABC-ATPase subunit interface; other site
360102005661	antimicrobial peptide ABC transporter permease SapC; Provisional; Region: PRK15111
360102005662	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102005663	putative PBP binding loops; other site
360102005664	dimer interface [polypeptide binding]; other site
360102005665	ABC-ATPase subunit interface; other site
360102005666	antimicrobial peptide ABC transporter ATP-binding protein; Provisional; Region: PRK15093
360102005667	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102005668	Walker A/P-loop; other site
360102005669	ATP binding site [chemical binding]; other site
360102005670	Q-loop/lid; other site
360102005671	ABC transporter signature motif; other site
360102005672	Walker B; other site
360102005673	D-loop; other site
360102005674	H-loop/switch region; other site
360102005675	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
360102005676	antimicrobial peptide ABC system ATP-binding protein SapF; Provisional; Region: PRK15112
360102005677	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102005678	Walker A/P-loop; other site
360102005679	ATP binding site [chemical binding]; other site
360102005680	Q-loop/lid; other site
360102005681	ABC transporter signature motif; other site
360102005682	Walker B; other site
360102005683	D-loop; other site
360102005684	H-loop/switch region; other site
360102005685	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
360102005686	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4950
360102005687	Uncharacterized conserved protein [Function unknown]; Region: COG2128
360102005688	Carboxymuconolactone decarboxylase family; Region: CMD; cl00460
360102005689	Dipeptide/tripeptide permease [Amino acid transport and metabolism]; Region: PTR2; COG3104
360102005690	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102005691	putative substrate translocation pore; other site
360102005692	POT family; Region: PTR2; pfam00854
360102005693	Protein of unknown function (DUF1282); Region: DUF1282; pfam06930
360102005694	hypothetical protein; Provisional; Region: PRK10515
360102005695	C-terminal, alpha helical domain of the Glutathione S-transferase family; Region: GST_C_family; cl02776
360102005696	N-terminal domain interface [polypeptide binding]; other site
360102005697	pyridoxamine kinase; Validated; Region: PRK05756
360102005698	Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate  (PLP), by catalyzing the phosphorylation of the precursor vitamin B6  in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and...; Region: pyridoxal_pyridoxamine_kinase; cd01173
360102005699	dimer interface [polypeptide binding]; other site
360102005700	pyridoxal binding site [chemical binding]; other site
360102005701	ATP binding site [chemical binding]; other site
360102005702	tyrosyl-tRNA synthetase; Validated; Region: PRK05912
360102005703	catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805
360102005704	active site
360102005705	HIGH motif; other site
360102005706	dimer interface [polypeptide binding]; other site
360102005707	KMSKS motif; other site
360102005708	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
360102005709	RNA binding surface [nucleotide binding]; other site
360102005710	pyridoxamine 5'-phosphate oxidase; Provisional; Region: PRK05679
360102005711	Pyridoxamine 5'-phosphate oxidase; Region: Pyridox_oxidase; pfam01243
360102005712	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; Region: PNPOx_C; pfam10590
360102005713	Predicted periplasmic protein [General function prediction only]; Region: COG3895
360102005714	Membrane-bound lysozyme-inhibitor of c-type lysozyme; Region: MliC; pfam09864
360102005715	anhydro-N-acetylmuramic acid kinase; Reviewed; Region: anmK; PRK09585
360102005716	Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]; Region: SlyB; COG3133
360102005717	transcriptional regulator SlyA; Provisional; Region: PRK03573
360102005718	Winged helix DNA-binding domain; Region: HTH_27; pfam13463
360102005719	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
360102005720	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
360102005721	active site
360102005722	catalytic tetrad [active]
360102005723	Predicted Fe-S protein [General function prediction only]; Region: COG3313
360102005724	putative metal dependent hydrolase; Provisional; Region: PRK11598
360102005725	Domain of unknown function (DUF1705); Region: DUF1705; pfam08019
360102005726	Sulfatase; Region: Sulfatase; pfam00884
360102005727	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
360102005728	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
360102005729	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
360102005730	Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a...; Region: OYE_like_FMN; cd02933
360102005731	FMN binding site [chemical binding]; other site
360102005732	active site
360102005733	substrate binding site [chemical binding]; other site
360102005734	catalytic residue [active]
360102005735	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
360102005736	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
360102005737	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
360102005738	Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione; Region: Glyoxalase_I; cd07233
360102005739	dimer interface [polypeptide binding]; other site
360102005740	active site
360102005741	metal binding site [ion binding]; metal-binding site
360102005742	glutathione binding site [chemical binding]; other site
360102005743	DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]; Region: DnaQ; COG0847
360102005744	DEDDh 3'-5' exonuclease domain of RNase T; Region: RNaseT; cd06134
360102005745	dimer interface [polypeptide binding]; other site
360102005746	catalytic site [active]
360102005747	putative active site [active]
360102005748	putative substrate binding site [chemical binding]; other site
360102005749	Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain...; Region: GRX_PICOT_like; cd03028
360102005750	putative GSH binding site [chemical binding]; other site
360102005751	catalytic residues [active]
360102005752	Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; Region: Spr; COG0791
360102005753	NlpC/P60 family; Region: NLPC_P60; cl17555
360102005754	Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; Region: Spr; COG0791
360102005755	NlpC/P60 family; Region: NLPC_P60; pfam00877
360102005756	superoxide dismutase; Provisional; Region: PRK10543
360102005757	Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081
360102005758	Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777
360102005759	DNA-binding transcriptional repressor PurR; Provisional; Region: PRK10703
360102005760	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102005761	DNA binding site [nucleotide binding]
360102005762	domain linker motif; other site
360102005763	Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli; Region: PBP1_PurR; cd06275
360102005764	dimerization interface [polypeptide binding]; other site
360102005765	ligand binding site [chemical binding]; other site
360102005766	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11074
360102005767	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102005768	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
360102005769	dimerization interface [polypeptide binding]; other site
360102005770	putative transporter; Provisional; Region: PRK11043
360102005771	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102005772	putative substrate translocation pore; other site
360102005773	cyclopropane fatty acyl phospholipid synthase; Provisional; Region: PRK11705
360102005774	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102005775	S-adenosylmethionine binding site [chemical binding]; other site
360102005776	riboflavin synthase subunit alpha; Provisional; Region: PRK13020
360102005777	Lumazine binding domain; Region: Lum_binding; pfam00677
360102005778	Lumazine binding domain; Region: Lum_binding; pfam00677
360102005779	multidrug efflux protein; Reviewed; Region: PRK01766
360102005780	Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM; Region: MATE_NorM_like; cd13131
360102005781	cation binding site [ion binding]; other site
360102005782	pyruvate kinase; Provisional; Region: PRK09206
360102005783	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cd00288
360102005784	domain interfaces; other site
360102005785	active site
360102005786	murein lipoprotein; Provisional; Region: PRK15396
360102005787	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102005788	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102005789	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102005790	DNA-binding interface [nucleotide binding]; DNA binding site
360102005791	Integrase core domain; Region: rve; pfam00665
360102005792	transposase/IS protein; Provisional; Region: PRK09183
360102005793	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102005794	Walker A motif; other site
360102005795	ATP binding site [chemical binding]; other site
360102005796	Walker B motif; other site
360102005797	L,D-transpeptidase; Provisional; Region: PRK10190
360102005798	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
360102005799	cysteine desufuration protein SufE; Provisional; Region: PRK09296
360102005800	Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520
360102005801	Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS...; Region: SufS_like; cd06453
360102005802	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102005803	catalytic residue [active]
360102005804	cysteine desulfurase activator complex subunit SufD; Provisional; Region: PRK10948
360102005805	FeS assembly protein SufD; Region: sufD; TIGR01981
360102005806	cysteine desulfurase ATPase component; Reviewed; Region: sufC; PRK09580
360102005807	ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Region: ABC_FeS_Assembly; cd03217
360102005808	Walker A/P-loop; other site
360102005809	ATP binding site [chemical binding]; other site
360102005810	Q-loop/lid; other site
360102005811	ABC transporter signature motif; other site
360102005812	Walker B; other site
360102005813	D-loop; other site
360102005814	H-loop/switch region; other site
360102005815	cysteine desulfurase activator complex subunit SufB; Provisional; Region: PRK11814
360102005816	putative ABC transporter; Region: ycf24; CHL00085
360102005817	iron-sulfur cluster assembly scaffold protein; Provisional; Region: sufA; PRK09504
360102005818	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
360102005819	CoenzymeA binding site [chemical binding]; other site
360102005820	subunit interaction site [polypeptide binding]; other site
360102005821	PHB binding site; other site
360102005822	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
360102005823	FAD binding domain; Region: FAD_binding_4; pfam01565
360102005824	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
360102005825	putative inner membrane protein; Provisional; Region: PRK10983
360102005826	Domain of unknown function DUF20; Region: UPF0118; pfam01594
360102005827	phosphoenolpyruvate synthase; Validated; Region: PRK06464
360102005828	Pyruvate phosphate dikinase, PEP/pyruvate binding domain; Region: PPDK_N; pfam01326
360102005829	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
360102005830	PEP-utilising enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
360102005831	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1806
360102005832	phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional; Region: PRK12756
360102005833	DAHP synthetase I family; Region: DAHP_synth_1; pfam00793
360102005834	Uncharacterized conserved protein [Function unknown]; Region: COG0397
360102005835	hypothetical protein; Validated; Region: PRK00029
360102005836	hypothetical protein; Validated; Region: PRK00029
360102005837	Uncharacterized conserved protein [Function unknown]; Region: COG0397
360102005838	lipoate-protein ligase A; Provisional; Region: lplA; PRK03822
360102005839	Lipoate-protein ligase A [Coenzyme metabolism]; Region: LplA; COG0095
360102005840	Bacterial lipoate protein ligase C-terminus; Region: Lip_prot_lig_C; pfam10437
360102005841	NlpC/P60 family; Region: NLPC_P60; pfam00877
360102005842	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional; Region: PRK02971
360102005843	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional; Region: PRK15051
360102005844	4-amino-4-deoxy-L-arabinose transferase; Provisional; Region: arnT; PRK13279
360102005845	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]; Region: ArnT; COG1807
360102005846	4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional; Region: PRK15394
360102005847	Catalytic domain of Escherichia coli 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD and other bacterial homologs; Region: CE4_ArnD; cd10939
360102005848	putative active site [active]
360102005849	putative catalytic site [active]
360102005850	putative Zn binding site [ion binding]; other site
360102005851	bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated; Region: PRK08125
360102005852	Formyltransferase, catalytic core domain; Region: FMT_core; cl00395
360102005853	active site
360102005854	substrate binding site [chemical binding]; other site
360102005855	cosubstrate binding site; other site
360102005856	catalytic site [active]
360102005857	C-terminal subdomain of the formyltransferase domain on ArnA, which modifies lipid A with 4-amino-4-deoxy-l-arabinose; Region: Arna_FMT_C; cd08702
360102005858	active site
360102005859	hexamer interface [polypeptide binding]; other site
360102005860	Arna decarboxylase_like, extended (e) SDRs; Region: Arna_like_SDR_e; cd05257
360102005861	NAD binding site [chemical binding]; other site
360102005862	substrate binding site [chemical binding]; other site
360102005863	active site
360102005864	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714
360102005865	Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187
360102005866	Ligand binding site; other site
360102005867	Putative Catalytic site; other site
360102005868	DXD motif; other site
360102005869	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
360102005870	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
360102005871	inhibitor-cofactor binding pocket; inhibition site
360102005872	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102005873	catalytic residue [active]
360102005874	ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]; Region: BtuD; COG4138
360102005875	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
360102005876	Walker A/P-loop; other site
360102005877	ATP binding site [chemical binding]; other site
360102005878	Q-loop/lid; other site
360102005879	ABC transporter signature motif; other site
360102005880	Walker B; other site
360102005881	D-loop; other site
360102005882	H-loop/switch region; other site
360102005883	Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per...; Region: GSH_Peroxidase; cd00340
360102005884	catalytic residues [active]
360102005885	dimer interface [polypeptide binding]; other site
360102005886	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
360102005887	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102005888	ABC-ATPase subunit  interface; other site
360102005889	dimer interface [polypeptide binding]; other site
360102005890	putative PBP binding regions; other site
360102005891	Protein of unknown function (DUF2502); Region: DUF2502; pfam10697
360102005892	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
360102005893	IHF dimer interface [polypeptide binding]; other site
360102005894	IHF - DNA interface [nucleotide binding]; other site
360102005895	phenylalanyl-tRNA synthetase subunit beta; Reviewed; Region: pheT; PRK00629
360102005896	tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain.  PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate...; Region: tRNA_bind_bactPheRS; cd02796
360102005897	putative tRNA-binding site [nucleotide binding]; other site
360102005898	B3/4 domain; Region: B3_4; pfam03483
360102005899	tRNA synthetase B5 domain; Region: B5; smart00874
360102005900	Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA,  PheRS is an...; Region: PheRS_beta_core; cd00769
360102005901	dimer interface [polypeptide binding]; other site
360102005902	motif 1; other site
360102005903	motif 3; other site
360102005904	motif 2; other site
360102005905	Ferredoxin-fold anticodon binding domain; Region: FDX-ACB; pfam03147
360102005906	phenylalanyl-tRNA synthetase subunit alpha; Validated; Region: pheS; PRK00488
360102005907	Aminoacyl tRNA synthetase class II, N-terminal domain; Region: Phe_tRNA-synt_N; pfam02912
360102005908	Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible...; Region: PheRS_alpha_core; cd00496
360102005909	dimer interface [polypeptide binding]; other site
360102005910	motif 1; other site
360102005911	active site
360102005912	motif 2; other site
360102005913	motif 3; other site
360102005914	Ribosomal protein L20; Region: Ribosomal_L20; cd07026
360102005915	23S rRNA binding site [nucleotide binding]; other site
360102005916	L21 binding site [polypeptide binding]; other site
360102005917	L13 binding site [polypeptide binding]; other site
360102005918	50S ribosomal protein L35; Reviewed; Region: rpmI; PRK00172
360102005919	translation initiation factor IF-3; Reviewed; Region: infC; PRK00028
360102005920	Translation initiation factor IF-3, C-terminal domain; Region: IF3_C; pfam00707
360102005921	threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK00413
360102005922	TGS _ThrRS_N:  ThrRS (threonyl-tRNA Synthetase)  is a class II tRNA synthetase that couples threonine to its cognate tRNA.  In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and...; Region: TGS_ThrRS_N; cd01667
360102005923	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; pfam07973
360102005924	Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ThrRS_core; cd00771
360102005925	active site
360102005926	dimer interface [polypeptide binding]; other site
360102005927	motif 1; other site
360102005928	motif 2; other site
360102005929	motif 3; other site
360102005930	ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: ThrRS_anticodon; cd00860
360102005931	anticodon binding site; other site
360102005932	KTSC domain; Region: KTSC; pfam13619
360102005933	inner membrane protein; Provisional; Region: PRK10995
360102005934	lytic murein endotransglycosylase E; Provisional; Region: emtA; PRK15470
360102005935	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
360102005936	N-acetyl-D-glucosamine binding site [chemical binding]; other site
360102005937	catalytic residue [active]
360102005938	ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]; Region: LraI; COG0803
360102005939	Metal binding protein PsaA.  These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins that...; Region: PsaA; cd01137
360102005940	metal binding site [ion binding]; metal-binding site
360102005941	manganese/iron transporter ATP-binding protein; Provisional; Region: PRK15056
360102005942	ATP-binding cassette domain of the metal-type transporters; Region: ABC_Metallic_Cations; cd03235
360102005943	ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108
360102005944	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102005945	ABC-ATPase subunit  interface; other site
360102005946	dimer interface [polypeptide binding]; other site
360102005947	putative PBP binding regions; other site
360102005948	ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108
360102005949	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102005950	ABC-ATPase subunit  interface; other site
360102005951	dimer interface [polypeptide binding]; other site
360102005952	putative PBP binding regions; other site
360102005953	Phosphotransferase enzyme family; Region: APH; pfam01636
360102005954	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cd05120
360102005955	active site
360102005956	ATP binding site [chemical binding]; other site
360102005957	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cl17270
360102005958	YniB-like protein; Region: YniB; pfam14002
360102005959	2-deoxyglucose-6-phosphatase; Provisional; Region: PRK10826
360102005960	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102005961	motif II; other site
360102005962	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102005963	MULE transposase domain; Region: MULE; pfam10551
360102005964	Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]; Region: COG1917
360102005965	5-keto-4-deoxyuronate isomerase; Provisional; Region: PRK00924
360102005966	2-deoxy-D-gluconate 3-dehydrogenase; Validated; Region: PRK08993
360102005967	gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Region: Ga5DH-like_SDR_c; cd05347
360102005968	NADP binding site [chemical binding]; other site
360102005969	homodimer interface [polypeptide binding]; other site
360102005970	active site
360102005971	Periplasmic pectate lyase; Region: Pectate_lyase_2; pfam06917
360102005972	transposase/IS protein; Provisional; Region: PRK09183
360102005973	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102005974	Walker A motif; other site
360102005975	ATP binding site [chemical binding]; other site
360102005976	Walker B motif; other site
360102005977	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102005978	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102005979	DNA-binding interface [nucleotide binding]; DNA binding site
360102005980	Integrase core domain; Region: rve; pfam00665
360102005981	Periplasmic pectate lyase; Region: Pectate_lyase_2; pfam06917
360102005982	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102005983	dimer interface [polypeptide binding]; other site
360102005984	conserved gate region; other site
360102005985	putative PBP binding loops; other site
360102005986	ABC-ATPase subunit interface; other site
360102005987	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
360102005988	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102005989	dimer interface [polypeptide binding]; other site
360102005990	conserved gate region; other site
360102005991	putative PBP binding loops; other site
360102005992	ABC-ATPase subunit interface; other site
360102005993	ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]; Region: MalK; COG3839
360102005994	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102005995	Walker A/P-loop; other site
360102005996	ATP binding site [chemical binding]; other site
360102005997	Q-loop/lid; other site
360102005998	ABC transporter signature motif; other site
360102005999	Walker B; other site
360102006000	D-loop; other site
360102006001	H-loop/switch region; other site
360102006002	TOBE domain; Region: TOBE_2; pfam08402
360102006003	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
360102006004	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
360102006005	Oligogalacturonate-specific porin protein (KdgM); Region: KdgM; cl11629
360102006006	inner membrane protein; Provisional; Region: PRK11648
360102006007	Predicted Na+/dicarboxylate symporter [General function prediction only]; Region: COG1823
360102006008	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
360102006009	N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: ampD; COG3023
360102006010	Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20...; Region: PGRP; cd06583
360102006011	amidase catalytic site [active]
360102006012	Zn binding residues [ion binding]; other site
360102006013	substrate binding site [chemical binding]; other site
360102006014	Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471
360102006015	DNA-binding transcriptional regulator KdgR; Provisional; Region: PRK15090
360102006016	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
360102006017	dimerization interface [polypeptide binding]; other site
360102006018	putative Zn2+ binding site [ion binding]; other site
360102006019	putative DNA binding site [nucleotide binding]; other site
360102006020	Bacterial transcriptional regulator; Region: IclR; pfam01614
360102006021	Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]; Region: TolB; COG0823
360102006022	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
360102006023	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102006024	Major Facilitator Superfamily; Region: MFS_1; pfam07690
360102006025	putative substrate translocation pore; other site
360102006026	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
360102006027	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102006028	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
360102006029	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
360102006030	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
360102006031	PapC N-terminal domain; Region: PapC_N; pfam13954
360102006032	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102006033	PapC C-terminal domain; Region: PapC_C; pfam13953
360102006034	fimbrial assembly chaperone StbE; Provisional; Region: PRK15246
360102006035	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102006036	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
360102006037	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
360102006038	heat shock protein HtpX; Provisional; Region: PRK05457
360102006039	carboxy-terminal protease; Provisional; Region: PRK11186
360102006040	PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988
360102006041	protein binding site [polypeptide binding]; other site
360102006042	C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560
360102006043	Catalytic dyad [active]
360102006044	C-terminal domain of tail specific protease (DUF3340); Region: DUF3340; pfam11818
360102006045	ProP expression regulator; Provisional; Region: PRK04950
360102006046	ProQ/FINO family; Region: ProQ; pfam04352
360102006047	GAF domain-containing protein [Signal transduction mechanisms]; Region: COG1956
360102006048	GAF domain; Region: GAF_2; pfam13185
360102006049	Uncharacterized paraquat-inducible protein A [Function unknown]; Region: PqiA; COG2995
360102006050	Paraquat-inducible protein A; Region: PqiA; pfam04403
360102006051	Paraquat-inducible protein A; Region: PqiA; pfam04403
360102006052	Paraquat-inducible protein B [General function prediction only]; Region: PqiB; COG3008
360102006053	mce related protein; Region: MCE; pfam02470
360102006054	mce related protein; Region: MCE; pfam02470
360102006055	mce related protein; Region: MCE; pfam02470
360102006056	mce related protein; Region: MCE; pfam02470
360102006057	mce related protein; Region: MCE; pfam02470
360102006058	mce related protein; Region: MCE; pfam02470
360102006059	Uncharacterized secreted protein [Function unknown]; Region: COG5430
360102006060	Uncharacterized secreted protein [Function unknown]; Region: COG5430
360102006061	Uncharacterized secreted protein [Function unknown]; Region: COG5430
360102006062	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
360102006063	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102006064	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
360102006065	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102006066	PapC C-terminal domain; Region: PapC_C; pfam13953
360102006067	Spore Coat Protein U domain; Region: SCPU; pfam05229
360102006068	Uncharacterized secreted protein [Function unknown]; Region: COG5430
360102006069	Protein of unknown function (DUF1480); Region: DUF1480; pfam07351
360102006070	ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to...; Region: ASCH_Ef3133_like; cd06553
360102006071	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102006072	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102006073	DNA-binding interface [nucleotide binding]; DNA binding site
360102006074	Integrase core domain; Region: rve; pfam00665
360102006075	transposase/IS protein; Provisional; Region: PRK09183
360102006076	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102006077	Walker A motif; other site
360102006078	ATP binding site [chemical binding]; other site
360102006079	Walker B motif; other site
360102006080	Patatin-like phospholipase; Region: Patatin; pfam01734
360102006081	nucleophile elbow; other site
360102006082	Lipase; Region: Lipase; pfam00151
360102006083	alanine racemase; Reviewed; Region: PRK13340
360102006084	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2; Region: PLPDE_III_AR2; cd06826
360102006085	active site
360102006086	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
360102006087	dimer interface [polypeptide binding]; other site
360102006088	substrate binding site [chemical binding]; other site
360102006089	catalytic residues [active]
360102006090	Autotransporter adhesin [Intracellular trafficking and secretion / Extracellular structures]; Region: Hia; COG5295
360102006091	YadA-like C-terminal region; Region: YadA; pfam03895
360102006092	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
360102006093	Haemagglutinin; Region: HIM; pfam05662
360102006094	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
360102006095	trimer interface [polypeptide binding]; other site
360102006096	N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: ampD; COG3023
360102006097	Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20...; Region: PGRP; cd06583
360102006098	amidase catalytic site [active]
360102006099	Zn binding residues [ion binding]; other site
360102006100	substrate binding site [chemical binding]; other site
360102006101	Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471
360102006102	chemotaxis regulator CheZ; Provisional; Region: PRK11166
360102006103	chemotaxis regulatory protein CheY; Provisional; Region: PRK10610
360102006104	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102006105	active site
360102006106	phosphorylation site [posttranslational modification]
360102006107	intermolecular recognition site; other site
360102006108	dimerization interface [polypeptide binding]; other site
360102006109	chemotaxis-specific methylesterase; Provisional; Region: PRK00742
360102006110	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102006111	active site
360102006112	phosphorylation site [posttranslational modification]
360102006113	intermolecular recognition site; other site
360102006114	dimerization interface [polypeptide binding]; other site
360102006115	CheB methylesterase; Region: CheB_methylest; pfam01339
360102006116	chemotaxis methyltransferase CheR; Provisional; Region: PRK10611
360102006117	CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705
360102006118	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102006119	methyl-accepting protein IV; Provisional; Region: PRK09793
360102006120	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cd00181
360102006121	dimer interface [polypeptide binding]; other site
360102006122	ligand binding site [chemical binding]; other site
360102006123	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102006124	dimerization interface [polypeptide binding]; other site
360102006125	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
360102006126	dimer interface [polypeptide binding]; other site
360102006127	putative CheW interface [polypeptide binding]; other site
360102006128	methyl-accepting chemotaxis protein I; Provisional; Region: PRK15041
360102006129	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cd00181
360102006130	dimer interface [polypeptide binding]; other site
360102006131	ligand binding site [chemical binding]; other site
360102006132	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102006133	dimerization interface [polypeptide binding]; other site
360102006134	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
360102006135	dimer interface [polypeptide binding]; other site
360102006136	putative CheW interface [polypeptide binding]; other site
360102006137	hypothetical protein; Provisional; Region: PRK10215
360102006138	Predicted membrane protein [Function unknown]; Region: COG5373
360102006139	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43; Region: PL2_Passenger_AT; cd01344
360102006140	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
360102006141	Autotransporter beta-domain; Region: Autotransporter; smart00869
360102006142	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2964
360102006143	YheO-like PAS domain; Region: PAS_6; pfam08348
360102006144	HTH domain; Region: HTH_22; pfam13309
360102006145	Xylose isomerase-like TIM barrel; Region: AP_endonuc_2; pfam01261
360102006146	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
360102006147	homotrimer interaction site [polypeptide binding]; other site
360102006148	putative active site [active]
360102006149	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102006150	putative substrate translocation pore; other site
360102006151	phosphoglycerate transporter family protein; Region: 2A0104; TIGR00881
360102006152	CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together...; Region: CheW; cd00732
360102006153	putative CheA interaction surface; other site
360102006154	chemotaxis protein CheA; Provisional; Region: PRK10547
360102006155	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
360102006156	putative binding surface; other site
360102006157	active site
360102006158	CheY binding; Region: CheY-binding; pfam09078
360102006159	Signal transducing histidine kinase, homodimeric domain; Region: H-kinase_dim; pfam02895
360102006160	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102006161	ATP binding site [chemical binding]; other site
360102006162	Mg2+ binding site [ion binding]; other site
360102006163	G-X-G motif; other site
360102006164	CheA regulatory domain; CheA is a histidine protein kinase present in bacteria and archea. Activated by the chemotaxis receptor a histidine phosphoryl group from CheA is passed directly to an aspartate in the response regulator CheY. This signalling...; Region: CheA_reg; cd00731
360102006165	flagellar motor protein MotB; Reviewed; Region: motB; PRK12799
360102006166	Membrane MotB of proton-channel complex MotA/MotB; Region: MotB_plug; pfam13677
360102006167	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
360102006168	ligand binding site [chemical binding]; other site
360102006169	Flagellar motor component [Cell motility and secretion]; Region: MotA; COG1291
360102006170	flagellar motor protein MotA; Validated; Region: PRK09110
360102006171	transcriptional activator FlhC; Provisional; Region: PRK12722
360102006172	transcriptional activator FlhD; Provisional; Region: PRK02909
360102006173	magnesium-transporting ATPase; Provisional; Region: PRK15122
360102006174	Cation transporter/ATPase, N-terminus; Region: Cation_ATPase_N; smart00831
360102006175	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
360102006176	Putative hydrolase of sodium-potassium ATPase alpha subunit; Region: Hydrolase_like2; pfam13246
360102006177	Soluble P-type ATPase [General function prediction only]; Region: COG4087
360102006178	Cation transporting ATPase, C-terminus; Region: Cation_ATPase_C; pfam00689
360102006179	magnesium transport protein MgtC; Provisional; Region: PRK15385
360102006180	MgtC family; Region: MgtC; pfam02308
360102006181	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cd00181
360102006182	dimer interface [polypeptide binding]; other site
360102006183	ligand binding site [chemical binding]; other site
360102006184	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102006185	dimerization interface [polypeptide binding]; other site
360102006186	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
360102006187	dimer interface [polypeptide binding]; other site
360102006188	putative CheW interface [polypeptide binding]; other site
360102006189	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
360102006190	hypothetical protein; Provisional; Region: PRK10708
360102006191	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
360102006192	DNA-binding site [nucleotide binding]; DNA binding site
360102006193	RNA-binding motif; other site
360102006194	transposase/IS protein; Provisional; Region: PRK09183
360102006195	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102006196	Walker A motif; other site
360102006197	ATP binding site [chemical binding]; other site
360102006198	Walker B motif; other site
360102006199	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102006200	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102006201	DNA-binding interface [nucleotide binding]; DNA binding site
360102006202	Integrase core domain; Region: rve; pfam00665
360102006203	beta-D-galactosidase; Reviewed; Region: lacZ; PRK09525
360102006204	Glycosyl hydrolases family 2, sugar binding domain; Region: Glyco_hydro_2_N; pfam02837
360102006205	Glycosyl hydrolases family 2; Region: Glyco_hydro_2; pfam00703
360102006206	Glycosyl hydrolases family 2, TIM barrel domain; Region: Glyco_hydro_2_C; pfam02836
360102006207	Beta galactosidase small chain; Region: Bgal_small_N; smart01038
360102006208	putative NAD(P)H quinone oxidoreductase, PIG3 family; Region: quinone_pig3; TIGR02824
360102006209	PIG3 p53-inducible quinone oxidoreductase; Region: p53_inducible_oxidoreductase; cd05276
360102006210	NAD(P) binding site [chemical binding]; other site
360102006211	sigma70 family sigma factor YlaC; Region: YlaC; pfam10777
360102006212	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
360102006213	AsnC-type helix-turn-helix domain; Region: HTH_AsnC-type; pfam13404
360102006214	putative DNA binding site [nucleotide binding]; other site
360102006215	putative Zn2+ binding site [ion binding]; other site
360102006216	AsnC family; Region: AsnC_trans_reg; pfam01037
360102006217	3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; Region: Kdo_hydroxy; pfam11004
360102006218	putative selenium-binding protein YdfZ; Region: YdfZ_fam; TIGR03318
360102006219	glucose-1-phosphatase/inositol phosphatase; Provisional; Region: PRK10173
360102006220	Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction; Region: HP_HAP_like; cd07061
360102006221	catalytic core [active]
360102006222	Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction; Region: HP_HAP_like; cd07061
360102006223	Predicted transcriptional regulators [Transcription]; Region: COG1733
360102006224	HxlR-like helix-turn-helix; Region: HxlR; pfam01638
360102006225	Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702
360102006226	triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs; Region: TMR_SDR_a; cd05269
360102006227	NADP binding site [chemical binding]; other site
360102006228	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
360102006229	PAS domain; Region: PAS_9; pfam13426
360102006230	putative active site [active]
360102006231	heme pocket [chemical binding]; other site
360102006232	HAMP domain; Region: HAMP; pfam00672
360102006233	dimerization interface [polypeptide binding]; other site
360102006234	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
360102006235	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
360102006236	dimer interface [polypeptide binding]; other site
360102006237	putative CheW interface [polypeptide binding]; other site
360102006238	Transcriptional regulators [Transcription]; Region: PurR; COG1609
360102006239	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102006240	DNA binding site [nucleotide binding]
360102006241	domain linker motif; other site
360102006242	Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors; Region: PBP1_sucrose_transcription_regulator; cd06288
360102006243	putative dimerization interface [polypeptide binding]; other site
360102006244	putative ligand binding site [chemical binding]; other site
360102006245	isocitrate dehydrogenase; Validated; Region: PRK07362
360102006246	isocitrate dehydrogenase; Reviewed; Region: PRK07006
360102006247	Pseudouridine synthase, Escherichia coli RluE; Region: PseudoU_synth_RluE; cd02566
360102006248	pseudouridine synthase; Region: TIGR00093
360102006249	probable active site [active]
360102006250	Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes...; Region: Nudix_Hydrolase_2; cd03675
360102006251	nudix motif; other site
360102006252	tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; Region: tRNA_Me_trans; cd01998
360102006253	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Region: trmU; TIGR00420
360102006254	putative lysogenization regulator; Reviewed; Region: PRK00218
360102006255	adenylosuccinate lyase; Provisional; Region: PRK09285
360102006256	PurB_like adenylosuccinases (adenylsuccinate lyase, ASL); Region: PurB; cd01598
360102006257	tetramer interface [polypeptide binding]; other site
360102006258	active site
360102006259	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; pfam13505
360102006260	DNA-binding transcriptional regulator PhoP; Provisional; Region: PRK10816
360102006261	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102006262	active site
360102006263	phosphorylation site [posttranslational modification]
360102006264	intermolecular recognition site; other site
360102006265	dimerization interface [polypeptide binding]; other site
360102006266	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102006267	DNA binding site [nucleotide binding]
360102006268	sensor protein PhoQ; Provisional; Region: PRK10815
360102006269	PhoQ Sensor; Region: PhoQ_Sensor; pfam08918
360102006270	His Kinase A (phospho-acceptor) domain; Region: HisKA; pfam00512
360102006271	dimer interface [polypeptide binding]; other site
360102006272	phosphorylation site [posttranslational modification]
360102006273	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102006274	ATP binding site [chemical binding]; other site
360102006275	Mg2+ binding site [ion binding]; other site
360102006276	G-X-G motif; other site
360102006277	Uncharacterized conserved protein [Function unknown]; Region: COG2850
360102006278	Cupin-like domain; Region: Cupin_8; pfam13621
360102006279	Di- and tripeptidases [Amino acid transport and metabolism]; Region: PepD; COG2195
360102006280	M20 Peptidase T specifically cleaves tripeptides; Region: M20_peptT; cd03892
360102006281	metal binding site [ion binding]; metal-binding site
360102006282	dimer interface [polypeptide binding]; other site
360102006283	NAD-dependent deacetylase; Provisional; Region: PRK00481
360102006284	SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which...; Region: SIRT5_Af1_CobB; cd01412
360102006285	NAD+ binding site [chemical binding]; other site
360102006286	substrate binding site [chemical binding]; other site
360102006287	Zn binding site [ion binding]; other site
360102006288	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
360102006289	fructokinase; Reviewed; Region: PRK09557
360102006290	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
360102006291	nucleotide binding site [chemical binding]; other site
360102006292	outer membrane-specific lipoprotein transporter subunit LolE; Provisional; Region: PRK11146
360102006293	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
360102006294	FtsX-like permease family; Region: FtsX; pfam02687
360102006295	lipoprotein transporter ATP-binding subunit; Provisional; Region: lolD; PRK11629
360102006296	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
360102006297	Walker A/P-loop; other site
360102006298	ATP binding site [chemical binding]; other site
360102006299	Q-loop/lid; other site
360102006300	ABC transporter signature motif; other site
360102006301	Walker B; other site
360102006302	D-loop; other site
360102006303	H-loop/switch region; other site
360102006304	outer membrane-specific lipoprotein transporter subunit LolC; Provisional; Region: PRK10814
360102006305	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
360102006306	FtsX-like permease family; Region: FtsX; pfam02687
360102006307	transcription-repair coupling factor; Provisional; Region: PRK10689
360102006308	CarD-like/TRCF domain; Region: CarD_TRCF; smart01058
360102006309	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
360102006310	ATP binding site [chemical binding]; other site
360102006311	putative Mg++ binding site [ion binding]; other site
360102006312	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102006313	nucleotide binding region [chemical binding]; other site
360102006314	ATP-binding site [chemical binding]; other site
360102006315	This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli; Region: TRCF; smart00982
360102006316	hypothetical protein; Provisional; Region: PRK11280
360102006317	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102006318	MULE transposase domain; Region: MULE; pfam10551
360102006319	NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; Region: Ndh; COG1252
360102006320	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
360102006321	hypothetical protein; Provisional; Region: PRK04940
360102006322	Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472
360102006323	beta-hexosaminidase; Provisional; Region: PRK05337
360102006324	thiamine kinase; Region: ycfN_thiK; TIGR02721
360102006325	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cd05120
360102006326	active site
360102006327	substrate binding site [chemical binding]; other site
360102006328	ATP binding site [chemical binding]; other site
360102006329	Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]; Region: FlgN; COG3417
360102006330	Predicted periplasmic lipoprotein [General function prediction only]; Region: COG5633
360102006331	Putative periplasmic lipoprotein; Region: DUF1425; cd09030
360102006332	putative dimer interface [polypeptide binding]; other site
360102006333	Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a...; Region: PKCI_related; cd01276
360102006334	nucleotide binding site/active site [active]
360102006335	HIT family signature motif; other site
360102006336	catalytic residue [active]
360102006337	shikimate 5-dehydrogenase; Reviewed; Region: PRK12550
360102006338	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
360102006339	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
360102006340	shikimate binding site; other site
360102006341	NAD(P) binding site [chemical binding]; other site
360102006342	3-oxoacyl-(acyl carrier protein) synthase II; Provisional; Region: PRK14691
360102006343	transposase/IS protein; Provisional; Region: PRK09183
360102006344	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102006345	Walker A motif; other site
360102006346	ATP binding site [chemical binding]; other site
360102006347	Walker B motif; other site
360102006348	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102006349	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102006350	DNA-binding interface [nucleotide binding]; DNA binding site
360102006351	Integrase core domain; Region: rve; pfam00665
360102006352	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102006353	PTS system glucose-specific transporter subunits IIBC; Provisional; Region: PRK11089
360102006354	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
360102006355	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
360102006356	active site turn [active]
360102006357	phosphorylation site [posttranslational modification]
360102006358	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
360102006359	active site
360102006360	DNA polymerase III subunit delta'; Validated; Region: PRK07993
360102006361	DNA polymerase III subunit delta'; Validated; Region: PRK08485
360102006362	DNA polymerase III, delta subunit, C terminal; Region: DNApol3-delta_C; pfam09115
360102006363	thymidylate kinase; Validated; Region: tmk; PRK00698
360102006364	Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672
360102006365	TMP-binding site; other site
360102006366	ATP-binding site [chemical binding]; other site
360102006367	Aminodeoxychorismate lyase [Coenzyme transport and metabolism]; Region: COG1559
360102006368	proteins similar to Escherichia coli yceG; Region: yceG_like; cd08010
360102006369	dimerization interface [polypeptide binding]; other site
360102006370	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]; Region: IlvE; COG0115
360102006371	ADCL_like: 4-Amino-4-deoxychorismate lyase:  is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate.  Based on the information available from the crystal structure, most...; Region: ADCL_like; cd01559
360102006372	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102006373	catalytic residue [active]
360102006374	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102006375	3-oxoacyl-(acyl carrier protein) synthase II; Reviewed; Region: PRK07314
360102006376	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
360102006377	dimer interface [polypeptide binding]; other site
360102006378	active site
360102006379	acyl carrier protein; Provisional; Region: acpP; PRK00982
360102006380	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557
360102006381	beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333
360102006382	NAD(P) binding site [chemical binding]; other site
360102006383	homotetramer interface [polypeptide binding]; other site
360102006384	homodimer interface [polypeptide binding]; other site
360102006385	active site
360102006386	(acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Region: FabD; COG0331
360102006387	malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128
360102006388	3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09352
360102006389	Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830
360102006390	dimer interface [polypeptide binding]; other site
360102006391	active site
360102006392	CoA binding pocket [chemical binding]; other site
360102006393	Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]; Region: PlsX; COG0416
360102006394	50S ribosomal protein L32; Validated; Region: rpmF; PRK01110
360102006395	hypothetical protein; Provisional; Region: PRK11193
360102006396	Maf-like protein; Region: Maf; pfam02545
360102006397	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
360102006398	active site
360102006399	dimer interface [polypeptide binding]; other site
360102006400	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102006401	23S rRNA pseudouridylate synthase C; Provisional; Region: PRK11025
360102006402	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
360102006403	RNA binding surface [nucleotide binding]; other site
360102006404	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
360102006405	active site
360102006406	YPA_r054; 5' UTR element of RNase E gene
360102006407	Ribonucleases G and E [Translation, ribosomal structure and biogenesis]; Region: CafA; COG1530
360102006408	S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453
360102006409	homodimer interface [polypeptide binding]; other site
360102006410	oligonucleotide binding site [chemical binding]; other site
360102006411	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102006412	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102006413	MULE transposase domain; Region: MULE; pfam10551
360102006414	Integrase core domain; Region: rve_3; cl15866
360102006415	Uncharacterized conserved protein [Function unknown]; Region: COG1359
360102006416	Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is...; Region: DHOase; cd01294
360102006417	active site
360102006418	substrate binding pocket [chemical binding]; other site
360102006419	dimer interface [polypeptide binding]; other site
360102006420	DNA damage-inducible protein I; Provisional; Region: PRK10597
360102006421	biofilm formation regulatory protein BssS; Reviewed; Region: bssS; PRK12301
360102006422	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102006423	MULE transposase domain; Region: MULE; pfam10551
360102006424	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102006425	MULE transposase domain; Region: MULE; pfam10551
360102006426	N-methyltryptophan oxidase; Provisional; Region: solA; PRK11259
360102006427	hydroxyglutarate oxidase; Provisional; Region: PRK11728
360102006428	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102006429	MULE transposase domain; Region: MULE; pfam10551
360102006430	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102006431	DNA binding residues [nucleotide binding]
360102006432	dimerization interface [polypeptide binding]; other site
360102006433	pheromone autoinducer 2 transporter; Reviewed; Region: tqsA; PRK12287
360102006434	Domain of unknown function DUF20; Region: UPF0118; pfam01594
360102006435	putative rhodanese-related sulfurtransferase; Provisional; Region: PRK00142
360102006436	Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins; Region: RHOD_YceA; cd01518
360102006437	active site residue [active]
360102006438	putative rhodanese-related sulfurtransferase; Provisional; Region: PRK00142
360102006439	EamA-like transporter family; Region: EamA; pfam00892
360102006440	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
360102006441	Autoinducer synthetase; Region: Autoind_synth; pfam00765
360102006442	Autoinducer binding domain; Region: Autoind_bind; pfam03472
360102006443	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102006444	DNA binding residues [nucleotide binding]
360102006445	dimerization interface [polypeptide binding]; other site
360102006446	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
360102006447	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102006448	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
360102006449	dimerization interface [polypeptide binding]; other site
360102006450	benzoate transport; Region: 2A0115; TIGR00895
360102006451	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102006452	putative substrate translocation pore; other site
360102006453	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102006454	Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]; Region: COG1795
360102006455	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
360102006456	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
360102006457	active site
360102006458	catalytic tetrad [active]
360102006459	CRISPR/Cas system-associated RAMP superfamily protein Cas6f; Region: Cas6_I-F; cd09674
360102006460	CRISPR/Cas system-associated RAMP superfamily protein Csy3; Region: Csy3_I-F; cd09737
360102006461	CRISPR/Cas system-associated RAMP superfamily protein Csy2; Region: Csy2_I-F; cd09676
360102006462	CRISPR/Cas system-associated protein Csy1; Region: Csy1_I-F; cd09675
360102006463	CRISPR/Cas system-associated protein Cas3/Cas2; Region: Cas3_Cas2_I-F; cd09673
360102006464	CRISPR-associated helicase Cas3, subtype I-F/YPEST; Region: cas3_yersinia; TIGR02562
360102006465	CRISPR/Cas system-associated protein Cas1; Region: Cas1_I-F; cd09718
360102006466	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
360102006467	Mechanosensitive ion channel; Region: MS_channel; pfam00924
360102006468	Protein of unknown function (DUF1861); Region: DUF1861; pfam08950
360102006469	Predicted glycosylase [Carbohydrate transport and metabolism]; Region: COG2152
360102006470	active site
360102006471	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
360102006472	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102006473	dimer interface [polypeptide binding]; other site
360102006474	conserved gate region; other site
360102006475	putative PBP binding loops; other site
360102006476	ABC-ATPase subunit interface; other site
360102006477	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
360102006478	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102006479	dimer interface [polypeptide binding]; other site
360102006480	putative PBP binding loops; other site
360102006481	ABC-ATPase subunit interface; other site
360102006482	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
360102006483	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
360102006484	Transcriptional regulators [Transcription]; Region: PurR; COG1609
360102006485	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102006486	DNA binding site [nucleotide binding]
360102006487	domain linker motif; other site
360102006488	Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors; Region: PBP1_LacI_like_3; cd06279
360102006489	putative dimerization interface [polypeptide binding]; other site
360102006490	putative ligand binding site [chemical binding]; other site
360102006491	phosphomannomutase CpsG; Provisional; Region: PRK15414
360102006492	The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a...; Region: PMM_PGM; cd03089
360102006493	active site
360102006494	substrate binding site [chemical binding]; other site
360102006495	metal binding site [ion binding]; metal-binding site
360102006496	glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650
360102006497	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
360102006498	Walker A/P-loop; other site
360102006499	ATP binding site [chemical binding]; other site
360102006500	Q-loop/lid; other site
360102006501	ABC transporter signature motif; other site
360102006502	Walker B; other site
360102006503	D-loop; other site
360102006504	H-loop/switch region; other site
360102006505	TOBE domain; Region: TOBE_2; pfam08402
360102006506	Domain of unknown function (DUF4279); Region: DUF4279; pfam14106
360102006507	Pre-toxin domain with VENN motif; Region: PT-VENN; pfam04829
360102006508	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4304
360102006509	haemagglutination activity domain; Region: Haemagg_act; pfam05860
360102006510	Large exoproteins involved in heme utilization or adhesion [Intracellular trafficking and secretion]; Region: FhaB; COG3210
360102006511	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102006512	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102006513	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102006514	Pre-toxin domain with VENN motif; Region: PT-VENN; pfam04829
360102006515	Hemolysin activation/secretion protein [Intracellular trafficking and secretion]; Region: FhaC; COG2831
360102006516	POTRA domain, ShlB-type; Region: POTRA_2; pfam08479
360102006517	Haemolysin secretion/activation protein ShlB/FhaC/HecB; Region: ShlB; pfam03865
360102006518	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018
360102006519	Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal  ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur; Region: PDR_like; cd06185
360102006520	FMN-binding pocket [chemical binding]; other site
360102006521	flavin binding motif; other site
360102006522	phosphate binding motif [ion binding]; other site
360102006523	beta-alpha-beta structure motif; other site
360102006524	NAD binding pocket [chemical binding]; other site
360102006525	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
360102006526	catalytic loop [active]
360102006527	iron binding site [ion binding]; other site
360102006528	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
360102006529	Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable...; Region: Rieske_RO_Alpha_N; cd03469
360102006530	[2Fe-2S] cluster binding site [ion binding]; other site
360102006531	C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases; Region: RHO_alpha_C_2; cd08886
360102006532	putative alpha subunit interface [polypeptide binding]; other site
360102006533	putative active site [active]
360102006534	putative substrate binding site [chemical binding]; other site
360102006535	Fe binding site [ion binding]; other site
360102006536	putative transporter; Provisional; Region: PRK09950
360102006537	Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]; Region: LeuB; COG0473
360102006538	tartrate dehydrogenase; Region: TTC; TIGR02089
360102006539	transcriptional activator TtdR; Provisional; Region: PRK09801
360102006540	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102006541	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_9; cd08479
360102006542	putative effector binding pocket; other site
360102006543	putative dimerization interface [polypeptide binding]; other site
360102006544	Transcriptional regulators [Transcription]; Region: PurR; COG1609
360102006545	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102006546	DNA binding site [nucleotide binding]
360102006547	domain linker motif; other site
360102006548	Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily; Region: PBP1_LacI_sugar_binding_like; cd06267
360102006549	dimerization interface [polypeptide binding]; other site
360102006550	ligand binding site [chemical binding]; other site
360102006551	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102006552	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102006553	TM-ABC transporter signature motif; other site
360102006554	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
360102006555	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102006556	Walker A/P-loop; other site
360102006557	ATP binding site [chemical binding]; other site
360102006558	Q-loop/lid; other site
360102006559	ABC transporter signature motif; other site
360102006560	Walker B; other site
360102006561	D-loop; other site
360102006562	H-loop/switch region; other site
360102006563	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102006564	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879
360102006565	Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Region: PBP1_ABC_sugar_binding_like_11; cd06321
360102006566	putative ligand binding site [chemical binding]; other site
360102006567	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
360102006568	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl16912
360102006569	NAD(P) binding site [chemical binding]; other site
360102006570	threonine and homoserine efflux system; Provisional; Region: PRK10532
360102006571	putative acetyltransferase YhhY; Provisional; Region: PRK10140
360102006572	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
360102006573	Coenzyme A binding pocket [chemical binding]; other site
360102006574	Trans-aconitate methyltransferase [General function prediction only]; Region: Tam; COG4106
360102006575	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102006576	S-adenosylmethionine binding site [chemical binding]; other site
360102006577	DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]; Region: Dps; COG0783
360102006578	DPS protein, ferritin-like diiron-binding domain; Region: DPS; cd01043
360102006579	dimerization interface [polypeptide binding]; other site
360102006580	DPS ferroxidase diiron center [ion binding]; other site
360102006581	ion pore; other site
360102006582	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
360102006583	TPR motif; other site
360102006584	binding surface
360102006585	Uncharacterized conserved protein [Function unknown]; Region: COG1434
360102006586	YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been...; Region: YdcF-like; cd06259
360102006587	putative active site [active]
360102006588	glutamine ABC transporter periplasmic protein; Reviewed; Region: glnH; PRK09495
360102006589	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102006590	substrate binding pocket [chemical binding]; other site
360102006591	membrane-bound complex binding site; other site
360102006592	hinge residues; other site
360102006593	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
360102006594	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102006595	dimer interface [polypeptide binding]; other site
360102006596	conserved gate region; other site
360102006597	putative PBP binding loops; other site
360102006598	ABC-ATPase subunit interface; other site
360102006599	glutamine ABC transporter ATP-binding protein; Reviewed; Region: glnQ; PRK09493
360102006600	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
360102006601	Walker A/P-loop; other site
360102006602	ATP binding site [chemical binding]; other site
360102006603	Q-loop/lid; other site
360102006604	ABC transporter signature motif; other site
360102006605	Walker B; other site
360102006606	D-loop; other site
360102006607	H-loop/switch region; other site
360102006608	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
360102006609	PAS domain; Region: PAS_9; pfam13426
360102006610	putative active site [active]
360102006611	heme pocket [chemical binding]; other site
360102006612	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
360102006613	PAS domain; Region: PAS_9; pfam13426
360102006614	putative active site [active]
360102006615	heme pocket [chemical binding]; other site
360102006616	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
360102006617	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
360102006618	dimer interface [polypeptide binding]; other site
360102006619	putative CheW interface [polypeptide binding]; other site
360102006620	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102006621	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102006622	DNA-binding interface [nucleotide binding]; DNA binding site
360102006623	Integrase core domain; Region: rve; pfam00665
360102006624	transposase/IS protein; Provisional; Region: PRK09183
360102006625	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102006626	Walker A motif; other site
360102006627	ATP binding site [chemical binding]; other site
360102006628	Walker B motif; other site
360102006629	Protein of unknown function (DUF890); Region: Methyltransf_10; pfam05971
360102006630	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102006631	S-adenosylmethionine binding site [chemical binding]; other site
360102006632	Protein of unknown function (DUF1471); Region: DUF1471; cl11507
360102006633	glycosyl transferase family protein; Provisional; Region: PRK08136
360102006634	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
360102006635	O-succinylbenzoic acid--CoA ligase; Provisional; Region: PRK09029
360102006636	O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE); Region: OSB_CoA_lg; cd05912
360102006637	acyl-activating enzyme (AAE) consensus motif; other site
360102006638	putative AMP binding site [chemical binding]; other site
360102006639	putative active site [active]
360102006640	putative CoA binding site [chemical binding]; other site
360102006641	O-succinylbenzoate synthase; Provisional; Region: PRK05105
360102006642	o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway; Region: OSBS; cd03320
360102006643	active site
360102006644	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
360102006645	Enoyl-CoA hydratase/isomerase family; Region: ECH; pfam00378
360102006646	substrate binding site [chemical binding]; other site
360102006647	oxyanion hole (OAH) forming residues; other site
360102006648	trimer interface [polypeptide binding]; other site
360102006649	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Provisional; Region: PRK11126
360102006650	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase; Validated; Region: PRK07449
360102006651	Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1- carboxylate synthase (MenD) and related proteins; Region: TPP_PYR_MenD; cd07037
360102006652	dimer interface [polypeptide binding]; other site
360102006653	tetramer interface [polypeptide binding]; other site
360102006654	PYR/PP interface [polypeptide binding]; other site
360102006655	TPP binding site [chemical binding]; other site
360102006656	Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key...; Region: TPP_SHCHC_synthase; cd02009
360102006657	TPP-binding site; other site
360102006658	Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: MenF; COG1169
360102006659	chorismate binding enzyme; Region: Chorismate_bind; cl10555
360102006660	Uncharacterized conserved protein [Function unknown]; Region: ElaB; COG4575
360102006661	phosphogluconate dehydratase; Validated; Region: PRK09054
360102006662	6-phosphogluconate dehydratase; Region: edd; TIGR01196
360102006663	Uncharacterized conserved protein [Function unknown]; Region: COG4702
360102006664	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102006665	D-galactonate transporter; Region: 2A0114; TIGR00893
360102006666	putative substrate translocation pore; other site
360102006667	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
360102006668	Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase; Region: HPPR; cd12156
360102006669	putative ligand binding site [chemical binding]; other site
360102006670	NAD binding site [chemical binding]; other site
360102006671	catalytic site [active]
360102006672	gluconate operon transcriptional regulator; Provisional; Region: PRK14987
360102006673	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102006674	DNA binding site [nucleotide binding]
360102006675	domain linker motif; other site
360102006676	Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_GntR; cd01575
360102006677	putative ligand binding site [chemical binding]; other site
360102006678	putative dimerization interface [polypeptide binding]; other site
360102006679	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1649
360102006680	Uncharacterized BCR, COG1649; Region: DUF187; pfam02638
360102006681	gluconate 5-dehydrogenase; Provisional; Region: PRK08085
360102006682	gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Region: Ga5DH-like_SDR_c; cd05347
360102006683	NADP binding site [chemical binding]; other site
360102006684	homodimer interface [polypeptide binding]; other site
360102006685	active site
360102006686	Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits; Region: GntK; cd02021
360102006687	AAA domain; Region: AAA_33; pfam13671
360102006688	ATP-binding site [chemical binding]; other site
360102006689	Gluconate-6-phosphate binding site [chemical binding]; other site
360102006690	Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]; Region: EbgC; COG2731
360102006691	RNA polymerase I-specific transcription-initiation factor; Region: Rrn6; pfam10214
360102006692	NADH:ubiquinone oxidoreductase subunit N; Provisional; Region: PRK05777
360102006693	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
360102006694	NADH:ubiquinone oxidoreductase subunit M; Reviewed; Region: PRK05846
360102006695	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
360102006696	NADH:ubiquinone oxidoreductase subunit L; Reviewed; Region: PRK06590
360102006697	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; Region: Oxidored_q1_N; pfam00662
360102006698	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
360102006699	NADH:ubiquinone oxidoreductase subunit K; Validated; Region: PRK05715
360102006700	NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; Region: NuoJ; COG0839
360102006701	NADH dehydrogenase subunit J; Provisional; Region: PRK06433
360102006702	NADH dehydrogenase subunit I; Provisional; Region: PRK05888
360102006703	4Fe-4S binding domain; Region: Fer4; pfam00037
360102006704	4Fe-4S binding domain; Region: Fer4; pfam00037
360102006705	NADH:ubiquinone oxidoreductase subunit H; Provisional; Region: PRK06076
360102006706	NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]; Region: NuoG; COG1034
360102006707	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
360102006708	catalytic loop [active]
360102006709	iron binding site [ion binding]; other site
360102006710	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; pfam10588
360102006711	MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory...; Region: MopB_NDH-1_NuoG2-N7; cd02771
360102006712	[4Fe-4S] binding site [ion binding]; other site
360102006713	MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex...; Region: MopB_CT_NDH-1_NuoG2-N7; cd02788
360102006714	NADH dehydrogenase I subunit F; Provisional; Region: PRK11278
360102006715	SLBB domain; Region: SLBB; pfam10531
360102006716	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Region: NADH_4Fe-4S; smart00928
360102006717	NADH dehydrogenase subunit E; Validated; Region: PRK07539
360102006718	TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes; Region: TRX_Fd_NuoE; cd03064
360102006719	putative dimer interface [polypeptide binding]; other site
360102006720	[2Fe-2S] cluster binding site [ion binding]; other site
360102006721	bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional; Region: PRK11742
360102006722	NADH (or F420H2) dehydrogenase, subunit C; Region: NuoC_fam; TIGR01961
360102006723	NADH dehydrogenase subunit D; Validated; Region: PRK06075
360102006724	NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]; Region: NuoB; COG0377
360102006725	NADH:ubiquinone oxidoreductase subunit A; Validated; Region: PRK06602
360102006726	DNA-binding transcriptional repressor LrhA; Provisional; Region: PRK15092
360102006727	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102006728	The C-terminal substrate domain of LysR-like regulator LrhA (LysR homologue A) and that of closely related homologs, contains the type 2 periplasmic binding fold; Region: PBP2_LrhA_like; cd08439
360102006729	putative dimerization interface [polypeptide binding]; other site
360102006730	aminotransferase AlaT; Validated; Region: PRK09265
360102006731	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
360102006732	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102006733	homodimer interface [polypeptide binding]; other site
360102006734	catalytic residue [active]
360102006735	5'-nucleotidase; Provisional; Region: PRK03826
360102006736	Permease SLC13 (solute carrier 13).  The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is...; Region: SLC13_permease; cd01115
360102006737	transmembrane helices; other site
360102006738	Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]; Region: CitT; COG0471
360102006739	TrkA-C domain; Region: TrkA_C; pfam02080
360102006740	TrkA-C domain; Region: TrkA_C; pfam02080
360102006741	Permease SLC13 (solute carrier 13).  The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is...; Region: SLC13_permease; cd01115
360102006742	putative phosphatase; Provisional; Region: PRK11587
360102006743	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102006744	motif II; other site
360102006745	hypothetical protein; Validated; Region: PRK05445
360102006746	hypothetical protein; Provisional; Region: PRK01816
360102006747	propionate/acetate kinase; Provisional; Region: PRK12379
360102006748	acetate kinase A/propionate kinase 2; Reviewed; Region: PRK00180
360102006749	phosphate acetyltransferase; Reviewed; Region: PRK05632
360102006750	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
360102006751	DRTGG domain; Region: DRTGG; pfam07085
360102006752	phosphate acetyltransferase; Region: pta; TIGR00651
360102006753	Transcriptional regulators [Transcription]; Region: PurR; COG1609
360102006754	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102006755	DNA binding site [nucleotide binding]
360102006756	domain linker motif; other site
360102006757	Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_GntR; cd01575
360102006758	putative dimerization interface [polypeptide binding]; other site
360102006759	putative ligand binding site [chemical binding]; other site
360102006760	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
360102006761	active site
360102006762	phosphorylation site [posttranslational modification]
360102006763	PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a...; Region: PTS_IIB_ascorbate; cd05563
360102006764	active site
360102006765	P-loop; other site
360102006766	phosphorylation site [posttranslational modification]
360102006767	PTS system ascorbate-specific transporter subunit IIC; Reviewed; Region: ulaA; PRK09410
360102006768	NUDIX hydrolase YfcD; Provisional; Region: PRK15393
360102006769	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cl00447
360102006770	nudix motif; other site
360102006771	Escherichia coli YfcE and related proteins, metallophosphatase domain; Region: MPP_YfcE; cd00841
360102006772	active site
360102006773	metal binding site [ion binding]; metal-binding site
360102006774	homotetramer interface [polypeptide binding]; other site
360102006775	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
360102006776	atypical (a) SDRs, subgroup 8; Region: SDR_a8; cd05242
360102006777	Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]; Region: COG1090
360102006778	putative NAD(P) binding site [chemical binding]; other site
360102006779	putative active site [active]
360102006780	histidine/lysine/arginine/ornithine transporter subunit; Provisional; Region: PRK10619
360102006781	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
360102006782	Walker A/P-loop; other site
360102006783	ATP binding site [chemical binding]; other site
360102006784	Q-loop/lid; other site
360102006785	ABC transporter signature motif; other site
360102006786	Walker B; other site
360102006787	D-loop; other site
360102006788	H-loop/switch region; other site
360102006789	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
360102006790	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102006791	dimer interface [polypeptide binding]; other site
360102006792	conserved gate region; other site
360102006793	putative PBP binding loops; other site
360102006794	ABC-ATPase subunit interface; other site
360102006795	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
360102006796	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102006797	dimer interface [polypeptide binding]; other site
360102006798	conserved gate region; other site
360102006799	putative PBP binding loops; other site
360102006800	ABC-ATPase subunit interface; other site
360102006801	histidine ABC transporter substrate-binding protein HisJ; Provisional; Region: PRK15437
360102006802	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102006803	substrate binding pocket [chemical binding]; other site
360102006804	membrane-bound complex binding site; other site
360102006805	hinge residues; other site
360102006806	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102006807	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102006808	DNA-binding interface [nucleotide binding]; DNA binding site
360102006809	Integrase core domain; Region: rve; pfam00665
360102006810	transposase/IS protein; Provisional; Region: PRK09183
360102006811	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102006812	Walker A motif; other site
360102006813	ATP binding site [chemical binding]; other site
360102006814	Walker B motif; other site
360102006815	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional; Region: PRK06029
360102006816	Flavoprotein; Region: Flavoprotein; pfam02441
360102006817	amidophosphoribosyltransferase; Provisional; Region: PRK09246
360102006818	Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of  glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the...; Region: GPATase_N; cd00715
360102006819	active site
360102006820	tetramer interface [polypeptide binding]; other site
360102006821	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
360102006822	active site
360102006823	Uncharacterized membrane protein, required for colicin V production [General function prediction only]; Region: CvpA; COG1286
360102006824	colicin V production protein; Provisional; Region: PRK10845
360102006825	cell division protein DedD; Provisional; Region: PRK11633
360102006826	Sporulation related domain; Region: SPOR; pfam05036
360102006827	bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional; Region: PRK10846
360102006828	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
360102006829	acetyl-CoA carboxylase subunit beta; Validated; Region: PRK05654
360102006830	malonate decarboxylase subunit beta; Reviewed; Region: PRK07189; cl17682
360102006831	hypothetical protein; Provisional; Region: PRK10847
360102006832	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
360102006833	tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021
360102006834	Eukaryotic and bacterial pseudouridine synthases similar to E.  coli TruA; Region: PseudoU_synth_EcTruA; cd02570
360102006835	dimerization interface 3.5A [polypeptide binding]; other site
360102006836	active site
360102006837	putative semialdehyde dehydrogenase; Provisional; Region: PRK08040
360102006838	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
360102006839	erythronate-4-phosphate dehydrogenase PdxB; Provisional; Region: PRK15438
360102006840	D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains; Region: ErythrP_dh; cd12158
360102006841	ligand binding site [chemical binding]; other site
360102006842	NAD binding site [chemical binding]; other site
360102006843	catalytic site [active]
360102006844	homodimer interface [polypeptide binding]; other site
360102006845	Cupin domain; Region: Cupin_2; pfam07883
360102006846	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
360102006847	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102006848	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
360102006849	EamA-like transporter family; Region: EamA; pfam00892
360102006850	flagella biosynthesis regulator; Provisional; Region: flk; PRK10715
360102006851	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
360102006852	Aspartate racemase [Cell envelope biogenesis, outer membrane]; Region: RacX; COG1794
360102006853	aspartate racemase; Region: asp_race; TIGR00035
360102006854	3-oxoacyl-(acyl carrier protein) synthase I; Reviewed; Region: PRK07967
360102006855	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
360102006856	dimer interface [polypeptide binding]; other site
360102006857	active site
360102006858	Uncharacterized conserved protein [Function unknown]; Region: COG4121
360102006859	bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed; Region: mnmC; PRK01747
360102006860	hydroxyglutarate oxidase; Provisional; Region: PRK11728
360102006861	YfcL protein; Region: YfcL; pfam08891
360102006862	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3101
360102006863	hypothetical protein; Provisional; Region: PRK10621
360102006864	Predicted permeases [General function prediction only]; Region: COG0730
360102006865	Murein endopeptidase [Cell envelope biogenesis, outer membrane]; Region: MepA; COG3770
360102006866	penicillin-insensitive murein endopeptidase; Reviewed; Region: mepA; PRK09429
360102006867	Chorismate synthase [Amino acid transport and metabolism]; Region: AroC; COG0082
360102006868	Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Region: Chorismate_synthase; cd07304
360102006869	Tetramer interface [polypeptide binding]; other site
360102006870	active site
360102006871	FMN-binding site [chemical binding]; other site
360102006872	HemK family putative methylases; Region: hemK_fam; TIGR00536
360102006873	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102006874	S-adenosylmethionine binding site [chemical binding]; other site
360102006875	hypothetical protein; Provisional; Region: PRK04946
360102006876	Smr domain; Region: Smr; pfam01713
360102006877	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
360102006878	catalytic core [active]
360102006879	multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadJ; PRK11154
360102006880	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
360102006881	substrate binding site [chemical binding]; other site
360102006882	oxyanion hole (OAH) forming residues; other site
360102006883	trimer interface [polypeptide binding]; other site
360102006884	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
360102006885	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
360102006886	3-ketoacyl-CoA thiolase; Reviewed; Region: fadI; PRK08963
360102006887	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
360102006888	dimer interface [polypeptide binding]; other site
360102006889	active site
360102006890	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3691
360102006891	long-chain fatty acid outer membrane transporter; Provisional; Region: PRK10716
360102006892	ABC transporter outer membrane lipoprotein; Provisional; Region: PRK15091
360102006893	Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]; Region: COG4235
360102006894	cytochrome c-type biogenesis protein CcmI; Region: cytochro_ccmI; TIGR03142
360102006895	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
360102006896	binding surface
360102006897	TPR motif; other site
360102006898	Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]; Region: CcmH; COG3088
360102006899	TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c...; Region: TlpA_like_DsbE; cd03010
360102006900	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
360102006901	catalytic residues [active]
360102006902	central insert; other site
360102006903	Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]; Region: CcmF; COG1138
360102006904	cytochrome c-type biogenesis protein CcmE; Reviewed; Region: PRK13165
360102006905	Heme exporter protein D [Intracellular trafficking and secretion]; Region: CcmD; COG3114
360102006906	heme exporter protein CcmC; Region: ccmC; TIGR01191
360102006907	heme exporter protein CcmB; Region: ccmB; TIGR01190
360102006908	cytochrome c biogenesis protein CcmA; Provisional; Region: PRK13538
360102006909	Cytochrome c biogenesis ATP-binding export protein; Region: ABC_CcmA_heme_exporter; cd03231
360102006910	Walker A/P-loop; other site
360102006911	ATP binding site [chemical binding]; other site
360102006912	Q-loop/lid; other site
360102006913	ABC transporter signature motif; other site
360102006914	Walker B; other site
360102006915	D-loop; other site
360102006916	H-loop/switch region; other site
360102006917	Uncharacterized conserved protein [Function unknown]; Region: LemA; COG1704
360102006918	Predicted membrane protein (DUF2207); Region: DUF2207; pfam09972
360102006919	Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]; Region: PhnA; COG2824
360102006920	PhnA Zinc-Ribbon; Region: PhnA_Zn_Ribbon; pfam08274
360102006921	PhnA protein; Region: PhnA; pfam03831
360102006922	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3518
360102006923	Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]; Region: ImpE; COG4455
360102006924	ImpE protein; Region: ImpE; pfam07024
360102006925	PAAR motif; Region: PAAR_motif; pfam05488
360102006926	Uncharacterized protein conserved in bacteria [Function unknown]; Region: VgrG; COG3501
360102006927	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
360102006928	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
360102006929	Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and    vesicular transport]; Region: IcmF; COG3523
360102006930	Intracellular multiplication and human macrophage-killing; Region: IcmF-related; pfam06761
360102006931	Protein of unknown function (DUF1215); Region: DUF1215; pfam06744
360102006932	Uncharacterized protein conserved in bacteria (DUF2077); Region: DUF2077; cl01370
360102006933	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
360102006934	ligand binding site [chemical binding]; other site
360102006935	transposase/IS protein; Provisional; Region: PRK09183
360102006936	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102006937	Walker A motif; other site
360102006938	ATP binding site [chemical binding]; other site
360102006939	Walker B motif; other site
360102006940	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102006941	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102006942	DNA-binding interface [nucleotide binding]; DNA binding site
360102006943	Integrase core domain; Region: rve; pfam00665
360102006944	Uncharacterized protein conserved in bacteria (DUF2077); Region: DUF2077; pfam09850
360102006945	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3522
360102006946	Bacterial protein of unknown function (DUF876); Region: DUF876; pfam05936
360102006947	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3521
360102006948	Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion,    and vesicular transport]; Region: Hcp; COG3157
360102006949	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3517
360102006950	Protein of unknown function (DUF877); Region: DUF877; pfam05943
360102006951	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3516
360102006952	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
360102006953	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
360102006954	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102006955	PapC C-terminal domain; Region: PapC_C; pfam13953
360102006956	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102006957	MULE transposase domain; Region: MULE; pfam10551
360102006958	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
360102006959	PapC N-terminal domain; Region: PapC_N; pfam13954
360102006960	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102006961	putative chaperone protein EcpD; Provisional; Region: PRK09926
360102006962	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102006963	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
360102006964	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
360102006965	type VI secretion ATPase, ClpV1 family; Region: VI_ClpV1; TIGR03345
360102006966	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102006967	Walker A motif; other site
360102006968	ATP binding site [chemical binding]; other site
360102006969	Walker B motif; other site
360102006970	arginine finger; other site
360102006971	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102006972	Walker A motif; other site
360102006973	ATP binding site [chemical binding]; other site
360102006974	Walker B motif; other site
360102006975	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
360102006976	Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3519
360102006977	Bacterial protein of unknown function (DUF879); Region: DUF879; pfam05947
360102006978	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3520
360102006979	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3515
360102006980	ImpA-related N-terminal; Region: ImpA-rel_N; pfam06812
360102006981	Fimbrial protein; Region: Fimbrial; pfam00419
360102006982	Glycosyltransferase (GlcNAc); Region: GlcNAc; pfam11397
360102006983	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
360102006984	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
360102006985	ligand binding site [chemical binding]; other site
360102006986	Uncharacterized conserved protein [Function unknown]; Region: COG5435
360102006987	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
360102006988	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102006989	DNA binding residues [nucleotide binding]
360102006990	dimerization interface [polypeptide binding]; other site
360102006991	Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]; Region: MltB; COG2951
360102006992	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
360102006993	N-acetyl-D-glucosamine binding site [chemical binding]; other site
360102006994	catalytic residue [active]
360102006995	ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: AfuA; COG1840
360102006996	Bacterial extracellular solute-binding protein; Region: SBP_bac_11; pfam13531
360102006997	ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178
360102006998	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102006999	dimer interface [polypeptide binding]; other site
360102007000	conserved gate region; other site
360102007001	putative PBP binding loops; other site
360102007002	ABC-ATPase subunit interface; other site
360102007003	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007004	dimer interface [polypeptide binding]; other site
360102007005	conserved gate region; other site
360102007006	putative PBP binding loops; other site
360102007007	ABC-ATPase subunit interface; other site
360102007008	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
360102007009	ATP-binding cassette domain of the carbohydrate and solute transporters-like; Region: ABC_Carb_Solutes_like; cd03259
360102007010	Walker A/P-loop; other site
360102007011	ATP binding site [chemical binding]; other site
360102007012	Q-loop/lid; other site
360102007013	ABC transporter signature motif; other site
360102007014	Walker B; other site
360102007015	D-loop; other site
360102007016	H-loop/switch region; other site
360102007017	Predicted membrane protein [Function unknown]; Region: COG4331
360102007018	type VI secretion system effector, Hcp1 family; Region: VI_effect_Hcp1; TIGR03344
360102007019	Protein of unknown function (DUF4225); Region: DUF4225; pfam13988
360102007020	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Region: dmsA_ynfE; TIGR02166
360102007021	This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a  predicted...; Region: MopB_DmsA-EC; cd02770
360102007022	putative [Fe4-S4] binding site [ion binding]; other site
360102007023	putative molybdopterin cofactor binding site [chemical binding]; other site
360102007024	The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a  predicted...; Region: MopB_CT_DmsA-EC; cd02794
360102007025	putative molybdopterin cofactor binding site; other site
360102007026	DMSO reductase, iron-sulfur subunit; Region: DMSO_dmsB; TIGR02951
360102007027	4Fe-4S binding domain; Region: Fer4; cl02805
360102007028	DMSO reductase anchor subunit [General function prediction only]; Region: DmsC; COG3302
360102007029	Uncharacterized component of anaerobic dehydrogenases [General function prediction only]; Region: TorD; COG3381
360102007030	4Fe-4S dicluster domain; Region: Fer4_7; pfam12838
360102007031	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4380
360102007032	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4259
360102007033	Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane]; Region: CsgG; COG1462
360102007034	Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]; Region: COG1598
360102007035	Cytochrome B561 [Energy production and conversion]; Region: CybB; COG3038
360102007036	aminotransferase; Validated; Region: PRK08175
360102007037	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
360102007038	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102007039	homodimer interface [polypeptide binding]; other site
360102007040	catalytic residue [active]
360102007041	Protein of unknown function (DUF1479); Region: DUF1479; pfam07350
360102007042	glucokinase, proteobacterial type; Region: glk; TIGR00749
360102007043	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
360102007044	nucleotide binding site [chemical binding]; other site
360102007045	Predicted membrane protein [Function unknown]; Region: COG4125
360102007046	Bacterial Transmembrane Pair family; Region: BTP; pfam05232
360102007047	Bacterial Transmembrane Pair family; Region: BTP; pfam05232
360102007048	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102007049	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102007050	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
360102007051	dimerization interface [polypeptide binding]; other site
360102007052	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
360102007053	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
360102007054	active site
360102007055	catalytic tetrad [active]
360102007056	Protein of unknown function (DUF2502); Region: DUF2502; pfam10697
360102007057	manganese transport protein MntH; Reviewed; Region: PRK00701
360102007058	Natural resistance-associated macrophage protein; Region: Nramp; pfam01566
360102007059	Nucleoside permease [Nucleotide transport and metabolism]; Region: NupC; COG1972
360102007060	Na+ dependent nucleoside transporter N-terminus; Region: Nucleos_tra2_N; pfam01773
360102007061	Nucleoside recognition; Region: Gate; pfam07670
360102007062	Na+ dependent nucleoside transporter C-terminus; Region: Nucleos_tra2_C; pfam07662
360102007063	glutamyl-tRNA synthetase; Reviewed; Region: gltX; PRK01406
360102007064	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
360102007065	HIGH motif; other site
360102007066	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
360102007067	active site
360102007068	KMSKS motif; other site
360102007069	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102007070	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3575
360102007071	FlxA-like protein; Region: FlxA; pfam14282
360102007072	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3530
360102007073	NAD-dependent DNA ligase LigA; Validated; Region: ligA; PRK07956
360102007074	NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cd00114
360102007075	nucleotide binding pocket [chemical binding]; other site
360102007076	K-X-D-G motif; other site
360102007077	catalytic site [active]
360102007078	NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120
360102007079	NAD-dependent DNA ligase C4 zinc finger domain; Region: DNA_ligase_ZBD; pfam03119
360102007080	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cl14786
360102007081	Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo...; Region: BRCT; cd00027
360102007082	Dimer interface [polypeptide binding]; other site
360102007083	BRCT sequence motif; other site
360102007084	cell division protein ZipA; Provisional; Region: PRK03427
360102007085	ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic...; Region: ZipA; cd00231
360102007086	FtsZ protein binding site [polypeptide binding]; other site
360102007087	putative sulfate transport protein CysZ; Validated; Region: PRK04949
360102007088	Etoposide-induced protein 2.4 (EI24); Region: EI24; cl01126
360102007089	Cysteine synthase [Amino acid transport and metabolism]; Region: CysK; COG0031
360102007090	CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine; Region: CBS_like; cd01561
360102007091	dimer interface [polypeptide binding]; other site
360102007092	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102007093	catalytic residue [active]
360102007094	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
360102007095	dimerization domain swap beta strand [polypeptide binding]; other site
360102007096	regulatory protein interface [polypeptide binding]; other site
360102007097	active site
360102007098	regulatory phosphorylation site [posttranslational modification]; other site
360102007099	phosphoenolpyruvate-protein phosphotransferase; Provisional; Region: PRK11177
360102007100	PEP-utilising enzyme, N-terminal; Region: PEP-utilisers_N; pfam05524
360102007101	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
360102007102	PEP-utilising enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
360102007103	PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_glc; cd00210
360102007104	HPr interaction site; other site
360102007105	glycerol kinase (GK) interaction site [polypeptide binding]; other site
360102007106	active site
360102007107	phosphorylation site [posttranslational modification]
360102007108	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102007109	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102007110	dimerization interface [polypeptide binding]; other site
360102007111	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102007112	dimer interface [polypeptide binding]; other site
360102007113	phosphorylation site [posttranslational modification]
360102007114	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102007115	ATP binding site [chemical binding]; other site
360102007116	Mg2+ binding site [ion binding]; other site
360102007117	G-X-G motif; other site
360102007118	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
360102007119	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102007120	active site
360102007121	phosphorylation site [posttranslational modification]
360102007122	intermolecular recognition site; other site
360102007123	dimerization interface [polypeptide binding]; other site
360102007124	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102007125	DNA binding site [nucleotide binding]
360102007126	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
360102007127	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102007128	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102007129	macrolide transporter ATP-binding /permease protein; Provisional; Region: PRK10535
360102007130	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
360102007131	Walker A/P-loop; other site
360102007132	ATP binding site [chemical binding]; other site
360102007133	Q-loop/lid; other site
360102007134	ABC transporter signature motif; other site
360102007135	Walker B; other site
360102007136	D-loop; other site
360102007137	H-loop/switch region; other site
360102007138	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
360102007139	FtsX-like permease family; Region: FtsX; pfam02687
360102007140	CoA-disulfide reductase; Region: CoA_CoA_reduc; TIGR03385
360102007141	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
360102007142	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
360102007143	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
360102007144	Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar...; Region: RHOD_Pyr_redox; cd01524
360102007145	active site residue [active]
360102007146	Predicted symporter [General function prediction only]; Region: DhlC; COG4147
360102007147	Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain; Region: SLC5sbd; cd10322
360102007148	Na binding site [ion binding]; other site
360102007149	peptidase; Provisional; Region: PRK15173
360102007150	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
360102007151	A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity...; Region: APP_MetAP; cd01066
360102007152	active site
360102007153	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
360102007154	Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]; Region: MalY; COG1168
360102007155	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
360102007156	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102007157	homodimer interface [polypeptide binding]; other site
360102007158	catalytic residue [active]
360102007159	Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]; Region: COG2304
360102007160	VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b...; Region: vWA_subgroup; cd01465
360102007161	metal ion-dependent adhesion site (MIDAS); other site
360102007162	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
360102007163	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102007164	dimer interface [polypeptide binding]; other site
360102007165	phosphorylation site [posttranslational modification]
360102007166	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102007167	ATP binding site [chemical binding]; other site
360102007168	Mg2+ binding site [ion binding]; other site
360102007169	G-X-G motif; other site
360102007170	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
360102007171	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102007172	active site
360102007173	phosphorylation site [posttranslational modification]
360102007174	intermolecular recognition site; other site
360102007175	dimerization interface [polypeptide binding]; other site
360102007176	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102007177	DNA binding site [nucleotide binding]
360102007178	type III secretion protein GogB; Provisional; Region: PRK15386
360102007179	cysteine synthase B; Region: cysM; TIGR01138
360102007180	CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine; Region: CBS_like; cd01561
360102007181	dimer interface [polypeptide binding]; other site
360102007182	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102007183	catalytic residue [active]
360102007184	sulfate/thiosulfate transporter subunit; Provisional; Region: PRK10851
360102007185	ATP-binding cassette domain of the sulfate transporter; Region: ABC_CysA_sulfate_importer; cd03296
360102007186	Walker A/P-loop; other site
360102007187	ATP binding site [chemical binding]; other site
360102007188	Q-loop/lid; other site
360102007189	ABC transporter signature motif; other site
360102007190	Walker B; other site
360102007191	D-loop; other site
360102007192	H-loop/switch region; other site
360102007193	TOBE-like domain; Region: TOBE_3; pfam12857
360102007194	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007195	dimer interface [polypeptide binding]; other site
360102007196	conserved gate region; other site
360102007197	putative PBP binding loops; other site
360102007198	ABC-ATPase subunit interface; other site
360102007199	ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]; Region: CysU; COG0555
360102007200	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007201	dimer interface [polypeptide binding]; other site
360102007202	conserved gate region; other site
360102007203	putative PBP binding loops; other site
360102007204	ABC-ATPase subunit interface; other site
360102007205	thiosulfate transporter subunit; Provisional; Region: PRK10852
360102007206	Bacterial extracellular solute-binding protein; Region: SBP_bac_11; pfam13531
360102007207	putative sialic acid transporter; Provisional; Region: PRK03893
360102007208	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102007209	putative substrate translocation pore; other site
360102007210	Transcriptional regulators [Transcription]; Region: RpiR; COG1737
360102007211	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
360102007212	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
360102007213	putative active site [active]
360102007214	Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]; Region: EbgC; COG2731
360102007215	N-acetylmannosamine kinase; Provisional; Region: PRK05082
360102007216	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
360102007217	nucleotide binding site [chemical binding]; other site
360102007218	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
360102007219	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cl15309
360102007220	Leucine rich repeat; Region: LRR_8; pfam13855
360102007221	E3 ubiquitin-protein ligase SspH2; Provisional; Region: PRK15387
360102007222	Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]; Region: NanE; COG3010
360102007223	N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of...; Region: NanE; cd04729
360102007224	putative active site cavity [active]
360102007225	Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329
360102007226	Class I aldolases; Region: Aldolase_Class_I; cl17187
360102007227	catalytic residue [active]
360102007228	Dyp-type peroxidase family; Region: Dyp_perox; pfam04261
360102007229	RpoE-regulated lipoprotein; Provisional; Region: PRK10718
360102007230	Protein of unknown function (DUF1131); Region: DUF1131; pfam06572
360102007231	Periplasmic protein with OB-fold [Function unknown]; Region: COG3111
360102007232	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343
360102007233	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
360102007234	Autotransporter beta-domain; Region: Autotransporter; pfam03797
360102007235	putative acetyltransferase; Provisional; Region: PRK03624
360102007236	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
360102007237	Coenzyme A binding pocket [chemical binding]; other site
360102007238	coproporphyrinogen III oxidase; Provisional; Region: PRK05330
360102007239	Coproporphyrinogen III oxidase; Region: Coprogen_oxidas; pfam01218
360102007240	hypothetical protein; Validated; Region: PRK00124
360102007241	bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed; Region: PRK07232
360102007242	Malic enzyme, N-terminal domain; Region: malic; pfam00390
360102007243	NAD(P) binding domain of malic enzyme (ME), subgroup 2; Region: NAD_bind_2_malic_enz; cd05311
360102007244	putative NAD(P) binding site [chemical binding]; other site
360102007245	Phosphotransacetylase [Energy production and conversion]; Region: Pta; COG0280
360102007246	ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+; Region: ADPRase_NUDT5; cd03424
360102007247	nudix motif; other site
360102007248	active site
360102007249	metal binding site [ion binding]; metal-binding site
360102007250	ADP-ribose binding site [chemical binding]; other site
360102007251	dimer interface [polypeptide binding]; other site
360102007252	transposase/IS protein; Provisional; Region: PRK09183
360102007253	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102007254	Walker A motif; other site
360102007255	ATP binding site [chemical binding]; other site
360102007256	Walker B motif; other site
360102007257	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102007258	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102007259	DNA-binding interface [nucleotide binding]; DNA binding site
360102007260	Integrase core domain; Region: rve; pfam00665
360102007261	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cl00447
360102007262	cytochrome c-type protein NapC; Provisional; Region: PRK10617
360102007263	Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit [Energy production and conversion]; Region: TorC; COG3005
360102007264	nitrate reductase cytochrome C550 subunit; Provisional; Region: napB; PRK11586
360102007265	nitrate reductase catalytic subunit; Provisional; Region: PRK13532
360102007266	Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol...; Region: MopB_Nitrate-R-NapA-like; cd02754
360102007267	[4Fe-4S] binding site [ion binding]; other site
360102007268	molybdopterin cofactor binding site; other site
360102007269	Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol...; Region: MopB_CT_Nitrate-R-NapA-like; cd02791
360102007270	molybdopterin cofactor binding site; other site
360102007271	assembly protein for periplasmic nitrate reductase; Provisional; Region: PRK10553
360102007272	ferredoxin-type protein; Provisional; Region: PRK10194
360102007273	transcriptional regulator NarP; Provisional; Region: PRK10403
360102007274	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102007275	active site
360102007276	phosphorylation site [posttranslational modification]
360102007277	intermolecular recognition site; other site
360102007278	dimerization interface [polypeptide binding]; other site
360102007279	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102007280	DNA binding residues [nucleotide binding]
360102007281	dimerization interface [polypeptide binding]; other site
360102007282	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4519
360102007283	aminoglycoside/multidrug efflux system; Provisional; Region: PRK10555
360102007284	Protein export membrane protein; Region: SecD_SecF; cl14618
360102007285	Protein export membrane protein; Region: SecD_SecF; cl14618
360102007286	Predicted membrane-bound metal-dependent hydrolase (DUF457); Region: DUF457; pfam04307
360102007287	anaerobic sulfatase-maturating enzyme; Region: sulfatase_rSAM; TIGR03942
360102007288	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102007289	FeS/SAM binding site; other site
360102007290	radical SAM additional 4Fe4S-binding SPASM domain; Region: rSAM_more_4Fe4S; TIGR04085
360102007291	Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]; Region: AslA; COG3119
360102007292	Sulfatase; Region: Sulfatase; pfam00884
360102007293	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
360102007294	ATP-binding cassette domain of the carbohydrate and solute transporters-like; Region: ABC_Carb_Solutes_like; cd03259
360102007295	Walker A/P-loop; other site
360102007296	ATP binding site [chemical binding]; other site
360102007297	Q-loop/lid; other site
360102007298	ABC transporter signature motif; other site
360102007299	Walker B; other site
360102007300	D-loop; other site
360102007301	H-loop/switch region; other site
360102007302	ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178
360102007303	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007304	dimer interface [polypeptide binding]; other site
360102007305	conserved gate region; other site
360102007306	ABC-ATPase subunit interface; other site
360102007307	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007308	dimer interface [polypeptide binding]; other site
360102007309	conserved gate region; other site
360102007310	putative PBP binding loops; other site
360102007311	ABC-ATPase subunit interface; other site
360102007312	ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: AfuA; COG1840
360102007313	Bacterial extracellular solute-binding protein; Region: SBP_bac_8; pfam13416
360102007314	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
360102007315	TPR motif; other site
360102007316	Tetratrico peptide repeat; Region: TPR_5; pfam12688
360102007317	binding surface
360102007318	Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine...; Region: ArsC_Yffb; cd03035
360102007319	ArsC family; Region: ArsC; pfam03960
360102007320	putative catalytic residues [active]
360102007321	succinyl-diaminopimelate desuccinylase; Reviewed; Region: PRK13009
360102007322	M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase; Region: M20_DapE_proteobac; cd03891
360102007323	metal binding site [ion binding]; metal-binding site
360102007324	dimer interface [polypeptide binding]; other site
360102007325	D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]; Region: VanY; COG1876
360102007326	D-alanyl-D-alanine carboxypeptidase; Region: VanY; pfam02557
360102007327	Uncharacterized protein family (UPF0370); Region: UPF0370; pfam13980
360102007328	Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]; Region: COG1444
360102007329	Domain of unknown function (DUF1726); Region: DUF1726; pfam08351
360102007330	Helicase; Region: Helicase_RecD; pfam05127
360102007331	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
360102007332	Coenzyme A binding pocket [chemical binding]; other site
360102007333	Possible tRNA binding domain; Region: tRNA_bind_2; pfam13725
360102007334	Predicted membrane protein [Function unknown]; Region: COG2707
360102007335	Predicted metalloprotease [General function prediction only]; Region: COG2321
360102007336	Putative neutral zinc metallopeptidase; Region: Zn_peptidase; pfam04228
360102007337	phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed; Region: PRK09362
360102007338	bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase; Region: SAICAR_synt_PurC; cd01415
360102007339	ATP binding site [chemical binding]; other site
360102007340	active site
360102007341	substrate binding site [chemical binding]; other site
360102007342	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102007343	lipoprotein; Provisional; Region: PRK11679
360102007344	NlpB/DapX lipoprotein; Region: Lipoprotein_18; pfam06804
360102007345	Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950
360102007346	dihydrodipicolinate synthase; Region: dapA; TIGR00674
360102007347	dimer interface [polypeptide binding]; other site
360102007348	active site
360102007349	catalytic residue [active]
360102007350	glycine cleavage system transcriptional repressor; Provisional; Region: gcvR; PRK11589
360102007351	ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains; Region: ACT_GcvR_1; cd04893
360102007352	ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141
360102007353	Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing...; Region: PRX_BCP; cd03017
360102007354	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
360102007355	catalytic triad [active]
360102007356	Predicted permease, member of the PurR regulon [General function prediction only]; Region: yhhT; COG0628
360102007357	Domain of unknown function DUF20; Region: UPF0118; pfam01594
360102007358	Putative Zn-dependent protease, contains TPR repeats [General function prediction only]; Region: COG4783
360102007359	Peptidase family M48; Region: Peptidase_M48; pfam01435
360102007360	Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the...; Region: ArsC_ArsC; cd03034
360102007361	ArsC family; Region: ArsC; pfam03960
360102007362	catalytic residues [active]
360102007363	ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]; Region: DnaA; COG0593
360102007364	DNA replication initiation factor; Provisional; Region: PRK08084
360102007365	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102007366	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
360102007367	active site
360102007368	phosphoribosylaminoimidazole synthetase; Provisional; Region: PRK05385
360102007369	PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis; Region: PurM; cd02196
360102007370	dimerization interface [polypeptide binding]; other site
360102007371	putative ATP binding site [chemical binding]; other site
360102007372	phosphoribosylglycinamide formyltransferase; Reviewed; Region: purN; PRK05647
360102007373	Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Region: FMT_core_GART; cd08645
360102007374	active site
360102007375	substrate binding site [chemical binding]; other site
360102007376	cosubstrate binding site; other site
360102007377	catalytic site [active]
360102007378	spermidine N1-acetyltransferase; Provisional; Region: PRK15130
360102007379	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
360102007380	Flagellin N-methylase; Region: FliB; pfam03692
360102007381	phosphate transporter ATP-binding protein; Provisional; Region: PRK14236
360102007382	ATP-binding cassette domain of the phosphate transport system; Region: ABC_PstB_phosphate_transporter; cd03260
360102007383	Walker A/P-loop; other site
360102007384	ATP binding site [chemical binding]; other site
360102007385	Q-loop/lid; other site
360102007386	ABC transporter signature motif; other site
360102007387	Walker B; other site
360102007388	D-loop; other site
360102007389	H-loop/switch region; other site
360102007390	ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]; Region: COG4985
360102007391	ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]; Region: PstA; COG0581
360102007392	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007393	dimer interface [polypeptide binding]; other site
360102007394	conserved gate region; other site
360102007395	putative PBP binding loops; other site
360102007396	ABC-ATPase subunit interface; other site
360102007397	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4590
360102007398	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007399	conserved gate region; other site
360102007400	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007401	dimer interface [polypeptide binding]; other site
360102007402	conserved gate region; other site
360102007403	putative PBP binding loops; other site
360102007404	ABC-ATPase subunit interface; other site
360102007405	Polyphosphate kinase [Inorganic ion transport and metabolism]; Region: Ppk; COG0855
360102007406	Polyphosphate kinase N-terminal domain; Region: PP_kinase_N; pfam13089
360102007407	Polyphosphate kinase middle domain; Region: PP_kinase; pfam02503
360102007408	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
360102007409	putative active site [active]
360102007410	catalytic site [active]
360102007411	Catalytic C-terminal domain, second repeat, of Escherichia coli polyphosphate kinase 1 and similar proteins; Region: PLDc_EcPPK1_C2_like; cd09167
360102007412	domain interface [polypeptide binding]; other site
360102007413	active site
360102007414	catalytic site [active]
360102007415	exopolyphosphatase; Provisional; Region: PRK10854
360102007416	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
360102007417	nucleotide binding site [chemical binding]; other site
360102007418	Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]; Region: MgtE; COG2239
360102007419	MgtE intracellular N domain; Region: MgtE_N; smart00924
360102007420	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE.  MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other...; Region: CBS_pair_Mg_transporter; cd04606
360102007421	Divalent cation transporter; Region: MgtE; cl00786
360102007422	putative chaperone; Provisional; Region: PRK11678
360102007423	Escherichia coli YegD, a putative chaperone protein, and related proteins; Region: YegD_like; cd10231
360102007424	nucleotide binding site [chemical binding]; other site
360102007425	putative NEF/HSP70 interaction site [polypeptide binding]; other site
360102007426	SBD interface [polypeptide binding]; other site
360102007427	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102007428	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102007429	DNA-binding interface [nucleotide binding]; DNA binding site
360102007430	Integrase core domain; Region: rve; pfam00665
360102007431	transposase/IS protein; Provisional; Region: PRK09183
360102007432	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102007433	Walker A motif; other site
360102007434	ATP binding site [chemical binding]; other site
360102007435	Walker B motif; other site
360102007436	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
360102007437	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007438	dimer interface [polypeptide binding]; other site
360102007439	conserved gate region; other site
360102007440	putative PBP binding loops; other site
360102007441	ABC-ATPase subunit interface; other site
360102007442	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007443	dimer interface [polypeptide binding]; other site
360102007444	conserved gate region; other site
360102007445	putative PBP binding loops; other site
360102007446	ABC-ATPase subunit interface; other site
360102007447	Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]; Region: PotD; COG0687
360102007448	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
360102007449	4-aminobutyrate aminotransferase; Provisional; Region: PRK06777
360102007450	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
360102007451	inhibitor-cofactor binding pocket; inhibition site
360102007452	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102007453	catalytic residue [active]
360102007454	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
360102007455	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102007456	DNA-binding site [nucleotide binding]; DNA binding site
360102007457	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
360102007458	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102007459	homodimer interface [polypeptide binding]; other site
360102007460	catalytic residue [active]
360102007461	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
360102007462	ATP-binding cassette domain of the polyamine transporter; Region: ABC_PotA_N; cd03300
360102007463	Walker A/P-loop; other site
360102007464	ATP binding site [chemical binding]; other site
360102007465	Q-loop/lid; other site
360102007466	ABC transporter signature motif; other site
360102007467	Walker B; other site
360102007468	D-loop; other site
360102007469	H-loop/switch region; other site
360102007470	TOBE domain; Region: TOBE_2; pfam08402
360102007471	multidrug efflux system subunit MdtA; Provisional; Region: PRK11556
360102007472	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102007473	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102007474	multidrug efflux system subunit MdtB; Provisional; Region: PRK10503
360102007475	Protein export membrane protein; Region: SecD_SecF; cl14618
360102007476	multidrug efflux system subunit MdtC; Provisional; Region: PRK10614
360102007477	Protein export membrane protein; Region: SecD_SecF; cl14618
360102007478	putative transporter; Provisional; Region: PRK10504
360102007479	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102007480	putative substrate translocation pore; other site
360102007481	signal transduction histidine-protein kinase BaeS; Provisional; Region: PRK10549
360102007482	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102007483	dimerization interface [polypeptide binding]; other site
360102007484	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102007485	dimer interface [polypeptide binding]; other site
360102007486	phosphorylation site [posttranslational modification]
360102007487	Histidine kinase-like ATPases; Region: HATPase_c; smart00387
360102007488	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102007489	ATP binding site [chemical binding]; other site
360102007490	G-X-G motif; other site
360102007491	DNA-binding transcriptional regulator BaeR; Provisional; Region: PRK10710
360102007492	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102007493	active site
360102007494	phosphorylation site [posttranslational modification]
360102007495	intermolecular recognition site; other site
360102007496	dimerization interface [polypeptide binding]; other site
360102007497	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102007498	DNA binding site [nucleotide binding]
360102007499	Uncharacterized conserved protein [Function unknown]; Region: COG3422
360102007500	Domain of unknown function (DUF1508); Region: DUF1508; pfam07411
360102007501	putative protease; Provisional; Region: PRK15452
360102007502	Peptidase family U32; Region: Peptidase_U32; pfam01136
360102007503	lipid kinase; Reviewed; Region: PRK13054
360102007504	Diacylglycerol kinase catalytic domain; Region: DAGK_cat; pfam00781
360102007505	Inhibitor of vertebrate lysozyme (Ivy); Region: Ivy; pfam08816
360102007506	4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of...; Region: HMPP_kinase; cd01169
360102007507	substrate binding site [chemical binding]; other site
360102007508	dimer interface [polypeptide binding]; other site
360102007509	ATP binding site [chemical binding]; other site
360102007510	Enterobacterial putative membrane protein (DUF943); Region: DUF943; pfam06092
360102007511	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102007512	MULE transposase domain; Region: MULE; pfam10551
360102007513	Protein of unknown function (DUF1240); Region: DUF1240; pfam06836
360102007514	Protein of unknown function (DUF1240); Region: DUF1240; pfam06836
360102007515	Protein of unknown function (DUF1240); Region: DUF1240; pfam06836
360102007516	Protein of unknown function (DUF1240); Region: DUF1240; pfam06836
360102007517	type VI secretion system effector, Hcp1 family; Region: VI_effect_Hcp1; TIGR03344
360102007518	Transposase IS200 like; Region: Y1_Tnp; cl00848
360102007519	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG1943
360102007520	GMP synthase; Reviewed; Region: guaA; PRK00074
360102007521	Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase; Region: GATase1_GMP_Synthase; cd01742
360102007522	AMP/PPi binding site [chemical binding]; other site
360102007523	candidate oxyanion hole; other site
360102007524	catalytic triad [active]
360102007525	potential glutamine specificity residues [chemical binding]; other site
360102007526	The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched...; Region: GMP_synthase_C; cd01997
360102007527	ATP Binding subdomain [chemical binding]; other site
360102007528	Ligand Binding sites [chemical binding]; other site
360102007529	Dimerization subdomain; other site
360102007530	inosine 5'-monophosphate dehydrogenase; Reviewed; Region: PRK05567
360102007531	TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl17186
360102007532	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein.  IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a...; Region: CBS_pair_IMPDH; cd04601
360102007533	IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of...; Region: IMPDH; cd00381
360102007534	active site
360102007535	exodeoxyribonuclease VII large subunit; Reviewed; Region: xseA; PRK00286
360102007536	ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF; cd04489
360102007537	generic binding surface II; other site
360102007538	generic binding surface I; other site
360102007539	Predicted permeases [General function prediction only]; Region: COG0679
360102007540	GTP-binding protein Der; Reviewed; Region: PRK00093
360102007541	EngA1 GTPase contains the first domain of EngA; Region: EngA1; cd01894
360102007542	G1 box; other site
360102007543	GTP/Mg2+ binding site [chemical binding]; other site
360102007544	Switch I region; other site
360102007545	G2 box; other site
360102007546	Switch II region; other site
360102007547	G3 box; other site
360102007548	G4 box; other site
360102007549	G5 box; other site
360102007550	EngA2 GTPase contains the second domain of EngA; Region: EngA2; cd01895
360102007551	G1 box; other site
360102007552	GTP/Mg2+ binding site [chemical binding]; other site
360102007553	Switch I region; other site
360102007554	G2 box; other site
360102007555	G3 box; other site
360102007556	Switch II region; other site
360102007557	G4 box; other site
360102007558	G5 box; other site
360102007559	outer membrane biogenesis protein BamB; Provisional; Region: PRK11138
360102007560	Beta-barrel assembly machinery (Bam) complex component B and related proteins; Region: BamB_YfgL; cd10276
360102007561	Trp docking motif [polypeptide binding]; other site
360102007562	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2976
360102007563	histidyl-tRNA synthetase; Reviewed; Region: hisS; PRK00037
360102007564	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for...; Region: HisRS-like_core; cd00773
360102007565	dimer interface [polypeptide binding]; other site
360102007566	motif 1; other site
360102007567	active site
360102007568	motif 2; other site
360102007569	motif 3; other site
360102007570	HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: HisRS_anticodon; cd00859
360102007571	anticodon binding site; other site
360102007572	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed; Region: ispG; PRK00366
360102007573	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated; Region: PRK00694
360102007574	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated; Region: PRK00694
360102007575	cytoskeletal protein RodZ; Provisional; Region: PRK10856
360102007576	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
360102007577	non-specific DNA binding site [nucleotide binding]; other site
360102007578	salt bridge; other site
360102007579	sequence-specific DNA binding site [nucleotide binding]; other site
360102007580	Domain of unknown function (DUF4115); Region: DUF4115; pfam13464
360102007581	Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilF; COG3063
360102007582	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
360102007583	binding surface
360102007584	TPR motif; other site
360102007585	ribosomal RNA large subunit methyltransferase N; Provisional; Region: PRK11194
360102007586	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102007587	FeS/SAM binding site; other site
360102007588	Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside...; Region: NDPk_I; cd04413
360102007589	active site
360102007590	multimer interface [polypeptide binding]; other site
360102007591	Protein of unkown function (DUF1881); Region: DUF1881; pfam08964
360102007592	Beta/Gamma crystallin; Region: Crystall; cl02528
360102007593	Beta/Gamma crystallin; Region: Crystall; cl02528
360102007594	Exotoxin A binding; Region: Exotox-A_bind; pfam09101
360102007595	Type V secretory pathway, adhesin AidA [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: AidA; COG3468
360102007596	Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V secretion system. Autotransporters are proteins used by Gram-negative bacteria to transport proteins across their outer membranes. The C-terminal (beta) domain...; Region: PL_Passenger_AT; cl00185
360102007597	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
360102007598	Autotransporter beta-domain; Region: Autotransporter; pfam03797
360102007599	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343
360102007600	Autotransporter beta-domain; Region: Autotransporter; pfam03797
360102007601	Autotransporter beta-domain; Region: Autotransporter; smart00869
360102007602	SseB protein; Region: SseB; pfam07179
360102007603	aminopeptidase B; Provisional; Region: PRK05015
360102007604	Peptidase; Region: DUF3663; pfam12404
360102007605	Cytosol aminopeptidase family, N-terminal and catalytic domains.  Family M17 contains zinc- and manganese-dependent exopeptidases ( EC  3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and...; Region: Peptidase_M17; cd00433
360102007606	interface (dimer of trimers) [polypeptide binding]; other site
360102007607	Substrate-binding/catalytic site; other site
360102007608	Zn-binding sites [ion binding]; other site
360102007609	hypothetical protein; Provisional; Region: PRK10721
360102007610	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
360102007611	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
360102007612	catalytic loop [active]
360102007613	iron binding site [ion binding]; other site
360102007614	chaperone protein HscA; Provisional; Region: hscA; PRK05183
360102007615	Nucleotide-binding domain of HscA and similar proteins; Region: HscA_like_NBD; cd10236
360102007616	nucleotide binding site [chemical binding]; other site
360102007617	putative NEF/HSP70 interaction site [polypeptide binding]; other site
360102007618	SBD interface [polypeptide binding]; other site
360102007619	co-chaperone HscB; Provisional; Region: hscB; PRK05014
360102007620	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
360102007621	HSP70 interaction site [polypeptide binding]; other site
360102007622	HSCB C-terminal oligomerisation domain; Region: HSCB_C; pfam07743
360102007623	iron-sulfur cluster assembly protein; Provisional; Region: iscA; PRK09502
360102007624	NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Region: IscU; COG0822
360102007625	Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cd06664
360102007626	trimerization site [polypeptide binding]; other site
360102007627	active site
360102007628	cysteine desulfurase; Provisional; Region: PRK14012
360102007629	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
360102007630	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102007631	catalytic residue [active]
360102007632	DNA-binding transcriptional regulator IscR; Provisional; Region: PRK10857
360102007633	Rrf2 family protein; Region: rrf2_super; TIGR00738
360102007634	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional; Region: PRK15114
360102007635	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
360102007636	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]; Region: SuhB; COG0483
360102007637	IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be...; Region: IMPase; cd01639
360102007638	active site
360102007639	dimerization interface [polypeptide binding]; other site
360102007640	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG2215
360102007641	ABC-type uncharacterized transport system, periplasmic component [General function prediction only]; Region: COG3683
360102007642	stationary phase inducible protein CsiE; Provisional; Region: PRK11564
360102007643	PRD domain; Region: PRD; pfam00874
360102007644	putative 3-phenylpropionic acid transporter; Provisional; Region: PRK11128
360102007645	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102007646	putative substrate translocation pore; other site
360102007647	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl17254
360102007648	serine hydroxymethyltransferase; Reviewed; Region: glyA; PRK00011
360102007649	Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl...; Region: SHMT; cd00378
360102007650	dimer interface [polypeptide binding]; other site
360102007651	active site
360102007652	glycine-pyridoxal phosphate binding site [chemical binding]; other site
360102007653	folate binding site [chemical binding]; other site
360102007654	bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional; Region: PRK13289
360102007655	Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen...; Region: globin; cd01040
360102007656	heme-binding site [chemical binding]; other site
360102007657	FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The...; Region: flavohem_like_fad_nad_binding; cd06184
360102007658	FAD binding pocket [chemical binding]; other site
360102007659	FAD binding motif [chemical binding]; other site
360102007660	phosphate binding motif [ion binding]; other site
360102007661	beta-alpha-beta structure motif; other site
360102007662	NAD binding pocket [chemical binding]; other site
360102007663	Heme binding  pocket [chemical binding]; other site
360102007664	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102007665	DNA-binding site [nucleotide binding]; DNA binding site
360102007666	nitrogen regulatory protein P-II 1; Provisional; Region: PRK10858
360102007667	Nitrogen regulatory protein P-II; Region: P-II; smart00938
360102007668	NAD synthetase; Provisional; Region: PRK13981
360102007669	Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases); Region: GAT_Gln-NAD-synth; cd07570
360102007670	multimer interface [polypeptide binding]; other site
360102007671	active site
360102007672	catalytic triad [active]
360102007673	protein interface 1 [polypeptide binding]; other site
360102007674	NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD...; Region: NAD_synthase; cd00553
360102007675	homodimer interface [polypeptide binding]; other site
360102007676	NAD binding pocket [chemical binding]; other site
360102007677	ATP binding pocket [chemical binding]; other site
360102007678	Mg binding site [ion binding]; other site
360102007679	active-site loop [active]
360102007680	response regulator GlrR; Provisional; Region: PRK15115
360102007681	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102007682	active site
360102007683	phosphorylation site [posttranslational modification]
360102007684	intermolecular recognition site; other site
360102007685	dimerization interface [polypeptide binding]; other site
360102007686	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102007687	Walker A motif; other site
360102007688	ATP binding site [chemical binding]; other site
360102007689	Walker B motif; other site
360102007690	arginine finger; other site
360102007691	hypothetical protein; Provisional; Region: PRK10722
360102007692	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
360102007693	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102007694	dimer interface [polypeptide binding]; other site
360102007695	phosphorylation site [posttranslational modification]
360102007696	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102007697	ATP binding site [chemical binding]; other site
360102007698	Mg2+ binding site [ion binding]; other site
360102007699	G-X-G motif; other site
360102007700	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102007701	N-acetylglucosamine-binding protein A; Reviewed; Region: PRK13211
360102007702	N-acetylglucosamine-binding protein A; Reviewed; Region: PRK13211
360102007703	phosphoribosylformylglycinamidine synthase; Provisional; Region: PRK05297
360102007704	PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP; Region: PurL_repeat1; cd02203
360102007705	dimerization interface [polypeptide binding]; other site
360102007706	ATP binding site [chemical binding]; other site
360102007707	AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain...; Region: PurM-like; cl10019
360102007708	dimerization interface [polypeptide binding]; other site
360102007709	ATP binding site [chemical binding]; other site
360102007710	Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase; Region: GATase1_FGAR_AT; cd01740
360102007711	putative active site [active]
360102007712	catalytic triad [active]
360102007713	membrane-bound lytic transglycosylase F; Provisional; Region: PRK10859
360102007714	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102007715	substrate binding pocket [chemical binding]; other site
360102007716	membrane-bound complex binding site; other site
360102007717	hinge residues; other site
360102007718	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
360102007719	N-acetyl-D-glucosamine binding site [chemical binding]; other site
360102007720	catalytic residue [active]
360102007721	Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285
360102007722	nucleoside/Zn binding site; other site
360102007723	dimer interface [polypeptide binding]; other site
360102007724	catalytic motif [active]
360102007725	haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB; Region: YfhB_g-proteo; TIGR01545
360102007726	Phosphoserine phosphatase [Amino acid transport and metabolism]; Region: SerB; COG0560
360102007727	N-acetylmuramic acid-6-phosphate etherase; Reviewed; Region: murQ; PRK05441
360102007728	N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid...; Region: SIS_Etherase; cd05007
360102007729	putative active site [active]
360102007730	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
360102007731	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11557
360102007732	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
360102007733	putative active site [active]
360102007734	4Fe-4S dicluster domain; Region: Fer4_7; pfam12838
360102007735	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102007736	4'-phosphopantetheinyl transferase; Provisional; Region: acpS; PRK00070
360102007737	Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in...; Region: PNPsynthase; cd00003
360102007738	active site
360102007739	hydrophilic channel; other site
360102007740	dimerization interface [polypeptide binding]; other site
360102007741	catalytic residues [active]
360102007742	active site lid [active]
360102007743	transposase/IS protein; Provisional; Region: PRK09183
360102007744	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102007745	Walker A motif; other site
360102007746	ATP binding site [chemical binding]; other site
360102007747	Walker B motif; other site
360102007748	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102007749	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102007750	DNA-binding interface [nucleotide binding]; DNA binding site
360102007751	Integrase core domain; Region: rve; pfam00665
360102007752	Catalytic domain of bacterial PuuE allantoinases, Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), and similar proteins; Region: CE4_PuuE_SpCDA1; cd10977
360102007753	tetramer interface [polypeptide binding]; other site
360102007754	active site
360102007755	glycine betaine transporter periplasmic subunit; Provisional; Region: proX; PRK11119
360102007756	Substrate binding domain of ABC-type glycine betaine transport system; Region: OpuAC; pfam04069
360102007757	glycine betaine transporter membrane protein; Provisional; Region: PRK10952
360102007758	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007759	dimer interface [polypeptide binding]; other site
360102007760	conserved gate region; other site
360102007761	putative PBP binding loops; other site
360102007762	ABC-ATPase subunit interface; other site
360102007763	glycine betaine transporter ATP-binding subunit; Provisional; Region: PRK10070
360102007764	ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; Region: ABC_Pro_Gly_Betaine; cd03294
360102007765	Walker A/P-loop; other site
360102007766	ATP binding site [chemical binding]; other site
360102007767	Q-loop/lid; other site
360102007768	ABC transporter signature motif; other site
360102007769	Walker B; other site
360102007770	D-loop; other site
360102007771	H-loop/switch region; other site
360102007772	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing...; Region: CBS_pair_ABC_OpuCA_assoc2; cd04583
360102007773	ribonucleotide-diphosphate reductase subunit beta; Provisional; Region: nrdF2; PRK13966
360102007774	Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; Region: RNRR2; cd01049
360102007775	dimer interface [polypeptide binding]; other site
360102007776	putative radical transfer pathway; other site
360102007777	diiron center [ion binding]; other site
360102007778	tyrosyl radical; other site
360102007779	ribonucleotide-diphosphate reductase subunit alpha; Validated; Region: PRK08188
360102007780	Ribonucleotide reductase N-terminal; Region: RNR_N; pfam08343
360102007781	Class I ribonucleotide reductase; Region: RNR_I; cd01679
360102007782	active site
360102007783	dimer interface [polypeptide binding]; other site
360102007784	catalytic residues [active]
360102007785	effector binding site; other site
360102007786	Ribonucleotide reductase and Pyruvate formate lyase; Region: RNR_PFL; cl09939
360102007787	ribonucleotide reductase stimulatory protein; Reviewed; Region: nrdI; PRK03600
360102007788	NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase...; Region: NrdH; cd02976
360102007789	catalytic residues [active]
360102007790	Protein of unknown function (DUF2002); Region: DUF2002; cl11580
360102007791	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102007792	MULE transposase domain; Region: MULE; pfam10551
360102007793	hypothetical protein; Provisional; Region: PRK10556
360102007794	Protein of unknown function (DUF1198); Region: DUF1198; pfam06711
360102007795	MbeD/MobD like; Region: MbeD_MobD; pfam04899
360102007796	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
360102007797	DNA-binding site [nucleotide binding]; DNA binding site
360102007798	RNA-binding motif; other site
360102007799	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_19; cd08518
360102007800	Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496
360102007801	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
360102007802	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007803	dimer interface [polypeptide binding]; other site
360102007804	conserved gate region; other site
360102007805	putative PBP binding loops; other site
360102007806	ABC-ATPase subunit interface; other site
360102007807	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
360102007808	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102007809	dimer interface [polypeptide binding]; other site
360102007810	conserved gate region; other site
360102007811	putative PBP binding loops; other site
360102007812	ABC-ATPase subunit interface; other site
360102007813	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102007814	nickel import ATP-binding protein NikD; Region: nickel_nikD; TIGR02770
360102007815	Walker A/P-loop; other site
360102007816	ATP binding site [chemical binding]; other site
360102007817	Q-loop/lid; other site
360102007818	ABC transporter signature motif; other site
360102007819	Walker B; other site
360102007820	D-loop; other site
360102007821	H-loop/switch region; other site
360102007822	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
360102007823	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102007824	Walker A/P-loop; other site
360102007825	ATP binding site [chemical binding]; other site
360102007826	Q-loop/lid; other site
360102007827	ABC transporter signature motif; other site
360102007828	Walker B; other site
360102007829	D-loop; other site
360102007830	H-loop/switch region; other site
360102007831	Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use...; Region: Urease_gamma; cd00390
360102007832	alpha-gamma subunit interface [polypeptide binding]; other site
360102007833	beta-gamma subunit interface [polypeptide binding]; other site
360102007834	Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of...; Region: Urease_beta; cd00407
360102007835	alpha-beta subunit interface [polypeptide binding]; other site
360102007836	urease subunit alpha; Reviewed; Region: ureC; PRK13309
360102007837	Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of...; Region: Urease_alpha; cd00375
360102007838	subunit interactions [polypeptide binding]; other site
360102007839	active site
360102007840	flap region; other site
360102007841	urease accessory protein UreE; Provisional; Region: ureE; PRK14711
360102007842	UreE urease accessory protein. UreE is a metallochaperone assisting the insertion of a Ni2+ ion in the active site of urease, an important step in the in vivo assembly of urease, an enzyme that hydrolyses urea into ammonia and carbamic acid. The...; Region: UreE; cd00571
360102007843	dimer interface [polypeptide binding]; other site
360102007844	catalytic residues [active]
360102007845	Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]; Region: UreF; COG0830
360102007846	UreF; Region: UreF; pfam01730
360102007847	Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]; Region: HypB; COG0378
360102007848	UreD urease accessory protein; Region: UreD; pfam01774
360102007849	Urea transporter [Amino acid transport and metabolism]; Region: Utp; COG4413
360102007850	High-affinity nickel permease [Inorganic ion transport and metabolism]; Region: HoxN; COG3376
360102007851	acid-resistance protein; Provisional; Region: hdeB; PRK11566
360102007852	voltage-gated potassium channel; Provisional; Region: PRK10537
360102007853	Ion channel; Region: Ion_trans_2; pfam07885
360102007854	TrkA-N domain; Region: TrkA_N; pfam02254
360102007855	camphor resistance protein CrcB; Provisional; Region: ccrB; PRK01636
360102007856	Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]; Region: CrcB; COG0239
360102007857	PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N; Region: PTS_IIB_chitobiose_lichenan; cd05564
360102007858	active site
360102007859	P-loop; other site
360102007860	phosphorylation site [posttranslational modification]
360102007861	PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional; Region: PRK10297
360102007862	cellobiose phosphotransferase system IIC component; Reviewed; Region: celD; PRK09592
360102007863	PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_lac; cd00215
360102007864	methionine cluster; other site
360102007865	active site
360102007866	phosphorylation site [posttranslational modification]
360102007867	metal binding site [ion binding]; metal-binding site
360102007868	DNA-binding transcriptional regulator ChbR; Provisional; Region: PRK10296
360102007869	Cupin domain; Region: Cupin_2; cl17218
360102007870	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102007871	Enterococcus faecalis EF3048 and similar proteins; Region: YdjC_EF3048_like; cd10803
360102007872	putative active site [active]
360102007873	YdjC motif; other site
360102007874	Mg binding site [ion binding]; other site
360102007875	putative homodimer interface [polypeptide binding]; other site
360102007876	Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]; Region: LprI; COG4461
360102007877	Protein of unknown function (DUF1311); Region: DUF1311; pfam07007
360102007878	replication initiation regulator SeqA; Provisional; Region: PRK11187
360102007879	phosphoglucomutase; Validated; Region: PRK07564
360102007880	This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl...; Region: PGM_like3; cd05801
360102007881	active site
360102007882	substrate binding site [chemical binding]; other site
360102007883	metal binding site [ion binding]; metal-binding site
360102007884	Predicted membrane protein [Function unknown]; Region: COG2510
360102007885	DNA-binding transcriptional activator KdpE; Provisional; Region: PRK10529
360102007886	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102007887	active site
360102007888	phosphorylation site [posttranslational modification]
360102007889	intermolecular recognition site; other site
360102007890	dimerization interface [polypeptide binding]; other site
360102007891	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102007892	DNA binding site [nucleotide binding]
360102007893	sensor protein KdpD; Provisional; Region: PRK10490
360102007894	Osmosensitive K+ channel His kinase sensor domain; Region: KdpD; pfam02702
360102007895	USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium...; Region: USP_OKCHK; cd01987
360102007896	Ligand Binding Site [chemical binding]; other site
360102007897	Domain of unknown function (DUF4118); Region: DUF4118; pfam13493
360102007898	GAF domain; Region: GAF_3; pfam13492
360102007899	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102007900	dimer interface [polypeptide binding]; other site
360102007901	phosphorylation site [posttranslational modification]
360102007902	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102007903	ATP binding site [chemical binding]; other site
360102007904	Mg2+ binding site [ion binding]; other site
360102007905	G-X-G motif; other site
360102007906	potassium-transporting ATPase subunit C; Reviewed; Region: PRK00315
360102007907	potassium-transporting ATPase subunit B; Provisional; Region: PRK01122
360102007908	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
360102007909	potassium-transporting ATPase subunit A; Provisional; Region: PRK05482
360102007910	Protein of unknown function (DUF2517); Region: DUF2517; pfam10725
360102007911	hypothetical protein; Provisional; Region: PRK10167
360102007912	Uncharacterized conserved protein [Function unknown]; Region: COG3272
360102007913	deoxyribodipyrimidine photolyase; Provisional; Region: PRK10674
360102007914	DNA photolyase; Region: DNA_photolyase; pfam00875
360102007915	cAMP phosphodiesterases class-II; Region: PDEase_II; cl17776
360102007916	Uncharacterized conserved protein [Function unknown]; Region: COG0327
360102007917	metal-binding protein; Provisional; Region: PRK10799
360102007918	Allophanate hydrolase subunit 1; Region: AHS1; smart00796
360102007919	Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; Region: DUR1; cl00896
360102007920	similar to putative carboxylase
360102007921	Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]; Region: DUR1; COG1984
360102007922	Escherichia coli putative lactam utilization protein YbgL and similar proteins; Region: LamB_YcsF_YbgL_like; cd10800
360102007923	putative active site [active]
360102007924	Predicted membrane protein [Function unknown]; Region: COG3819
360102007925	Predicted membrane protein [Function unknown]; Region: COG3817
360102007926	Predicted membrane protein [Function unknown]; Region: COG3817
360102007927	Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I:  Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from...; Region: Peptidase_C15; cd00501
360102007928	putative substrate binding pocket [chemical binding]; other site
360102007929	AC domain interface; other site
360102007930	catalytic triad [active]
360102007931	AB domain interface; other site
360102007932	interchain disulfide; other site
360102007933	Family 1 of Uracil-DNA glycosylase (UDG) enzymes; Region: UDG_F1; cd10027
360102007934	ligand binding site [chemical binding]; other site
360102007935	active site
360102007936	UGI interface [polypeptide binding]; other site
360102007937	catalytic site [active]
360102007938	autonomous glycyl radical cofactor GrcA; Provisional; Region: PRK11127
360102007939	Lipase.  Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of...; Region: Lipase; cl14883
360102007940	nucleophilic elbow; other site
360102007941	catalytic triad; other site
360102007942	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
360102007943	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
360102007944	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
360102007945	ATP-dependent RNA helicase SrmB; Provisional; Region: PRK11192
360102007946	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
360102007947	ATP binding site [chemical binding]; other site
360102007948	Mg++ binding site [ion binding]; other site
360102007949	motif III; other site
360102007950	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102007951	nucleotide binding region [chemical binding]; other site
360102007952	ATP-binding site [chemical binding]; other site
360102007953	Predicted O-methyltransferase [General function prediction only]; Region: COG4123
360102007954	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102007955	S-adenosylmethionine binding site [chemical binding]; other site
360102007956	L-aspartate oxidase; Provisional; Region: PRK09077
360102007957	L-aspartate oxidase; Provisional; Region: PRK06175
360102007958	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
360102007959	RNA polymerase sigma factor RpoE; Region: RpoE_Sigma70; TIGR02939
360102007960	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
360102007961	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
360102007962	DNA binding residues [nucleotide binding]
360102007963	anti-RNA polymerase sigma factor SigE; Provisional; Region: PRK10863
360102007964	Anti sigma-E protein RseA, N-terminal domain; Region: RseA_N; pfam03872
360102007965	Anti sigma-E protein RseA, C-terminal domain; Region: RseA_C; pfam03873
360102007966	Negative regulator of sigma E activity [Signal transduction mechanisms]; Region: RseB; COG3026
360102007967	anti-sigma E factor; Provisional; Region: rseB; PRK09455
360102007968	SoxR reducing system protein RseC; Provisional; Region: PRK10862
360102007969	GTP-binding protein LepA; Provisional; Region: PRK05433
360102007970	LepA also known as Elongation Factor 4 (EF4); Region: LepA; cd01890
360102007971	G1 box; other site
360102007972	putative GEF interaction site [polypeptide binding]; other site
360102007973	GTP/Mg2+ binding site [chemical binding]; other site
360102007974	Switch I region; other site
360102007975	G2 box; other site
360102007976	G3 box; other site
360102007977	Switch II region; other site
360102007978	G4 box; other site
360102007979	G5 box; other site
360102007980	lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu...; Region: lepA_II; cd03699
360102007981	lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane.   LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709
360102007982	GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421
360102007983	signal peptidase I; Provisional; Region: PRK10861
360102007984	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
360102007985	Catalytic site [active]
360102007986	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
360102007987	ribonuclease III; Reviewed; Region: rnc; PRK00102
360102007988	RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in...; Region: RIBOc; cd00593
360102007989	dimerization interface [polypeptide binding]; other site
360102007990	active site
360102007991	metal binding site [ion binding]; metal-binding site
360102007992	Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III; Region: DSRM; cd00048
360102007993	dsRNA binding site [nucleotide binding]; other site
360102007994	GTPase Era; Reviewed; Region: era; PRK00089
360102007995	E. coli Ras-like protein (Era) is a multifunctional GTPase; Region: Era; cd04163
360102007996	G1 box; other site
360102007997	GTP/Mg2+ binding site [chemical binding]; other site
360102007998	Switch I region; other site
360102007999	G2 box; other site
360102008000	Switch II region; other site
360102008001	G3 box; other site
360102008002	G4 box; other site
360102008003	G5 box; other site
360102008004	KH domain; Region: KH_2; pfam07650
360102008005	DNA repair protein RecO; Reviewed; Region: recO; PRK00085
360102008006	Recombination protein O N terminal; Region: RecO_N; pfam11967
360102008007	Recombination protein O C terminal; Region: RecO_C; pfam02565
360102008008	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102008009	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102008010	DNA-binding interface [nucleotide binding]; DNA binding site
360102008011	Integrase core domain; Region: rve; pfam00665
360102008012	transposase/IS protein; Provisional; Region: PRK09183
360102008013	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008014	Walker A motif; other site
360102008015	ATP binding site [chemical binding]; other site
360102008016	Walker B motif; other site
360102008017	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
360102008018	Transposase; Region: HTH_Tnp_1; pfam01527
360102008019	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
360102008020	active site
360102008021	Int/Topo IB signature motif; other site
360102008022	acyl-CoA esterase; Provisional; Region: PRK10673
360102008023	PGAP1-like protein; Region: PGAP1; pfam07819
360102008024	LexA regulated protein; Provisional; Region: PRK11675
360102008025	flavodoxin FldA; Validated; Region: PRK09267
360102008026	ferric uptake regulator; Provisional; Region: fur; PRK09462
360102008027	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153
360102008028	metal binding site 2 [ion binding]; metal-binding site
360102008029	putative DNA binding helix; other site
360102008030	metal binding site 1 [ion binding]; metal-binding site
360102008031	dimer interface [polypeptide binding]; other site
360102008032	structural Zn2+ binding site [ion binding]; other site
360102008033	Glycosyl hydrolase family 20, domain 2; Region: Glyco_hydro_20b; pfam02838
360102008034	The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a...; Region: GH20_Sm-chitobiase-like; cd06569
360102008035	Glycosyl hydrolase family 20, catalytic domain; Region: Glyco_hydro_20; pfam00728
360102008036	active site
360102008037	C-terminal Early set domain associated with the catalytic domain of chitobiase (also called N-acetylglucosaminidase); Region: E_set_Chitobiase_C; cd02847
360102008038	Putative carbohydrate binding domain; Region: CHB_HEX; smart01081
360102008039	outer membrane porin, OprD family; Region: OprD; pfam03573
360102008040	glutaminyl-tRNA synthetase; Provisional; Region: PRK05347
360102008041	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
360102008042	active site
360102008043	HIGH motif; other site
360102008044	nucleotide binding site [chemical binding]; other site
360102008045	catalytic core domain of glutaminyl-tRNA synthetase; Region: GlnRS_core; cd00807
360102008046	KMSKS motif; other site
360102008047	tRNA synthetases class I (E and Q), anti-codon binding domain; Region: tRNA-synt_1c_C; pfam03950
360102008048	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102008049	PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional; Region: PRK10255
360102008050	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
360102008051	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
360102008052	active site turn [active]
360102008053	phosphorylation site [posttranslational modification]
360102008054	PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_glc; cd00210
360102008055	HPr interaction site; other site
360102008056	glycerol kinase (GK) interaction site [polypeptide binding]; other site
360102008057	active site
360102008058	phosphorylation site [posttranslational modification]
360102008059	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]; Region: NagB; COG0363
360102008060	GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or...; Region: GlcN6P_deaminase; cd01399
360102008061	active site
360102008062	trimer interface [polypeptide binding]; other site
360102008063	allosteric site; other site
360102008064	active site lid [active]
360102008065	hexamer (dimer of trimers) interface [polypeptide binding]; other site
360102008066	N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]; Region: NagA; COG1820
360102008067	N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to...; Region: NagA; cd00854
360102008068	active site
360102008069	dimer interface [polypeptide binding]; other site
360102008070	MarR family; Region: MarR; pfam01047
360102008071	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
360102008072	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
360102008073	nucleotide binding site [chemical binding]; other site
360102008074	UMP phosphatase; Provisional; Region: PRK10444
360102008075	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102008076	active site
360102008077	motif I; other site
360102008078	motif II; other site
360102008079	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102008080	asparagine synthetase B; Provisional; Region: asnB; PRK09431
360102008081	Glutamine amidotransferases class-II (GATase) asparagine synthase_B type.  Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a  glutaminase domain and a...; Region: AsnB; cd00712
360102008082	active site
360102008083	dimer interface [polypeptide binding]; other site
360102008084	The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B  catalyzes the...; Region: Asn_Synthase_B_C; cd01991
360102008085	Ligand Binding Site [chemical binding]; other site
360102008086	Molecular Tunnel; other site
360102008087	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed; Region: ubiF; PRK08020
360102008088	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
360102008089	(dimethylallyl)adenosine tRNA methylthiotransferase; Provisional; Region: PRK14325
360102008090	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
360102008091	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102008092	FeS/SAM binding site; other site
360102008093	TRAM domain; Region: TRAM; pfam01938
360102008094	Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; Region: PhoH; COG1702
360102008095	PhoH-like protein; Region: PhoH; pfam02562
360102008096	metal-binding heat shock protein; Provisional; Region: PRK00016
360102008097	magnesium/cobalt efflux protein CorC; Provisional; Region: PRK15094
360102008098	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
360102008099	Transporter associated domain; Region: CorC_HlyC; smart01091
360102008100	apolipoprotein N-acyltransferase; Reviewed; Region: lnt; PRK00302
360102008101	Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571
360102008102	putative active site [active]
360102008103	catalytic triad [active]
360102008104	putative dimer interface [polypeptide binding]; other site
360102008105	glutamate and aspartate transporter subunit; Provisional; Region: PRK10797
360102008106	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102008107	substrate binding pocket [chemical binding]; other site
360102008108	membrane-bound complex binding site; other site
360102008109	hinge residues; other site
360102008110	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
360102008111	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102008112	dimer interface [polypeptide binding]; other site
360102008113	conserved gate region; other site
360102008114	putative PBP binding loops; other site
360102008115	ABC-ATPase subunit interface; other site
360102008116	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
360102008117	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102008118	dimer interface [polypeptide binding]; other site
360102008119	conserved gate region; other site
360102008120	putative PBP binding loops; other site
360102008121	ABC-ATPase subunit interface; other site
360102008122	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
360102008123	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
360102008124	Walker A/P-loop; other site
360102008125	ATP binding site [chemical binding]; other site
360102008126	Q-loop/lid; other site
360102008127	ABC transporter signature motif; other site
360102008128	Walker B; other site
360102008129	D-loop; other site
360102008130	H-loop/switch region; other site
360102008131	hypothetical protein; Provisional; Region: PRK11032
360102008132	Flagella accessory protein C (FlaC); Region: FlaC_arch; cl10488
360102008133	leucyl-tRNA synthetase; Validated; Region: leuS; PRK00390
360102008134	catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812
360102008135	HIGH motif; other site
360102008136	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
360102008137	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
360102008138	active site
360102008139	KMSKS motif; other site
360102008140	Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases; Region: Anticodon_Ia_Leu_BEm; cd07958
360102008141	tRNA binding surface [nucleotide binding]; other site
360102008142	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
360102008143	LPS-assembly lipoprotein RlpB; Provisional; Region: PRK10796
360102008144	DNA polymerase III subunit delta; Reviewed; Region: holA; PRK05574
360102008145	DNA polymerase III, delta subunit; Region: DNA_pol3_delta; pfam06144
360102008146	nicotinic acid mononucleotide adenylyltransferase; Provisional; Region: nadD; PRK00071
360102008147	Nicotinamide/nicotinate mononucleotide adenylyltransferase; Region: NMNAT; cd02165
360102008148	active site
360102008149	(T/H)XGH motif; other site
360102008150	ribosome-associated protein; Provisional; Region: PRK11538
360102008151	rRNA large subunit methyltransferase; Provisional; Region: PRK00103
360102008152	penicillin-binding protein 2; Provisional; Region: PRK10795
360102008153	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
360102008154	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
360102008155	cell wall shape-determining protein; Provisional; Region: PRK10794
360102008156	rare lipoprotein A; Provisional; Region: PRK10672
360102008157	Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Region: DPBB_1; pfam03330
360102008158	Sporulation related domain; Region: SPOR; pfam05036
360102008159	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102008160	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102008161	DNA-binding interface [nucleotide binding]; DNA binding site
360102008162	Integrase core domain; Region: rve; pfam00665
360102008163	transposase/IS protein; Provisional; Region: PRK09183
360102008164	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008165	Walker A motif; other site
360102008166	ATP binding site [chemical binding]; other site
360102008167	Walker B motif; other site
360102008168	D-alanyl-D-alanine carboxypeptidase fraction A; Provisional; Region: PRK10793
360102008169	Beta-lactamase enzyme family; Region: Beta-lactamase2; cl17872
360102008170	Penicillin-binding protein 5, C-terminal domain; Region: PBP5_C; smart00936
360102008171	hypothetical protein; Provisional; Region: PRK04998
360102008172	lipoate-protein ligase B; Provisional; Region: PRK14342
360102008173	lipoyl synthase; Provisional; Region: PRK05481
360102008174	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102008175	FeS/SAM binding site; other site
360102008176	twin arginine translocase protein A; Validated; Region: tatE; PRK01614
360102008177	chromosome condensation membrane protein; Provisional; Region: PRK14196
360102008178	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
360102008179	DNA-binding site [nucleotide binding]; DNA binding site
360102008180	RNA-binding motif; other site
360102008181	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
360102008182	DNA-binding site [nucleotide binding]; DNA binding site
360102008183	RNA-binding motif; other site
360102008184	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
360102008185	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102008186	DNA binding residues [nucleotide binding]
360102008187	dimerization interface [polypeptide binding]; other site
360102008188	Predicted O-acyltransferase [General function prediction only]; Region: COG3274
360102008189	Glycogen synthesis protein; Region: GlgS; cl11663
360102008190	Uncharacterized conserved protein [Function unknown]; Region: COG1359
360102008191	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102008192	ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]; Region: ATM1; COG5265
360102008193	ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; Region: ABCC_ATM1_transporter; cd03253
360102008194	Walker A/P-loop; other site
360102008195	ATP binding site [chemical binding]; other site
360102008196	Q-loop/lid; other site
360102008197	ABC transporter signature motif; other site
360102008198	Walker B; other site
360102008199	D-loop; other site
360102008200	H-loop/switch region; other site
360102008201	Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]; Region: IolB; COG3718
360102008202	Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082
360102008203	Uncharacterized protein conserved in bacteria (DUF2090); Region: DUF2090; pfam09863
360102008204	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
360102008205	2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166
360102008206	substrate binding site [chemical binding]; other site
360102008207	ATP binding site [chemical binding]; other site
360102008208	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
360102008209	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
360102008210	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102008211	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102008212	TM-ABC transporter signature motif; other site
360102008213	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
360102008214	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102008215	Walker A/P-loop; other site
360102008216	ATP binding site [chemical binding]; other site
360102008217	Q-loop/lid; other site
360102008218	ABC transporter signature motif; other site
360102008219	Walker B; other site
360102008220	D-loop; other site
360102008221	H-loop/switch region; other site
360102008222	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102008223	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879
360102008224	Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily; Region: PBP1_ABC_sugar_binding_like; cd01536
360102008225	ligand binding site [chemical binding]; other site
360102008226	Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; pfam02894
360102008227	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
360102008228	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
360102008229	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
360102008230	Domain of unknown function (DUF1886); Region: DUF1886; cl01666
360102008231	Acetolactate synthase [Amino acid transport and metabolism]; Region: COG3962
360102008232	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
360102008233	PYR/PP interface [polypeptide binding]; other site
360102008234	dimer interface [polypeptide binding]; other site
360102008235	TPP binding site [chemical binding]; other site
360102008236	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
360102008237	Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism; Region: TPP_IolD; cd02003
360102008238	TPP-binding site; other site
360102008239	Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2; Region: ALDH_F6_MMSDH; cd07085
360102008240	methylmalonic acid semialdehyde dehydrogenase; Region: MMSDH; TIGR01722
360102008241	tetrameric interface [polypeptide binding]; other site
360102008242	NAD binding site [chemical binding]; other site
360102008243	catalytic residues [active]
360102008244	Transcriptional regulators [Transcription]; Region: RpiR; COG1737
360102008245	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
360102008246	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
360102008247	putative active site [active]
360102008248	Predicted periplasmic/secreted protein [Function unknown]; Region: COG3477
360102008249	Large extracellular alpha-helical protein [General function prediction only]; Region: COG2373
360102008250	MG2 domain; Region: A2M_N; pfam01835
360102008251	Alpha-2-macroglobulin family; Region: A2M; pfam00207
360102008252	Proteins similar to alpha2-macroglobulin (alpha (2)-M).  Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor.  The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of...; Region: A2M_like; cd02891
360102008253	surface patch; other site
360102008254	thioester region; other site
360102008255	specificity defining residues; other site
360102008256	Transglycosylase; Region: Transgly; pfam00912
360102008257	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102008258	MULE transposase domain; Region: MULE; pfam10551
360102008259	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
360102008260	Penicillin-Binding Protein C-terminus Family; Region: BiPBP_C; pfam06832
360102008261	Winged helix-turn-helix DNA-binding; Region: HTH_35; pfam13693
360102008262	Protein of unknown function (DUF1240); Region: DUF1240; pfam06836
360102008263	Protein of unknown function (DUF1240); Region: DUF1240; pfam06836
360102008264	type VI secretion system effector, Hcp1 family; Region: VI_effect_Hcp1; TIGR03344
360102008265	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343
360102008266	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
360102008267	Autotransporter beta-domain; Region: Autotransporter; pfam03797
360102008268	Protein of unknwon function (DUF2893); Region: DUF2893; pfam11459
360102008269	Uncharacterized conserved protein [Function unknown]; Region: COG2850
360102008270	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102008271	MULE transposase domain; Region: MULE; pfam10551
360102008272	Predicted membrane protein (DUF2157); Region: DUF2157; pfam09925
360102008273	Predicted membrane protein [Function unknown]; Region: COG4984
360102008274	Uncharacterized membrane-anchored protein [Function unknown]; Region: COG4929
360102008275	beta-D-glucoside glucohydrolase; Provisional; Region: PRK15098
360102008276	Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; pfam00933
360102008277	Fibronectin type III-like domain; Region: Fn3-like; pfam14310
360102008278	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
360102008279	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
360102008280	active site
360102008281	catalytic tetrad [active]
360102008282	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
360102008283	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
360102008284	active site
360102008285	catalytic tetrad [active]
360102008286	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102008287	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102008288	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_5; cd08474
360102008289	putative effector binding pocket; other site
360102008290	putative dimerization interface [polypeptide binding]; other site
360102008291	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102008292	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102008293	DNA-binding interface [nucleotide binding]; DNA binding site
360102008294	Integrase core domain; Region: rve; pfam00665
360102008295	transposase/IS protein; Provisional; Region: PRK09183
360102008296	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008297	Walker A motif; other site
360102008298	ATP binding site [chemical binding]; other site
360102008299	Walker B motif; other site
360102008300	PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin; Region: PAP2_Aur1_like; cd03386
360102008301	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
360102008302	active site
360102008303	Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]; Region: CDC14; COG2453
360102008304	active site
360102008305	catalytic residues [active]
360102008306	Lysophospholipase [Lipid metabolism]; Region: PldB; COG2267
360102008307	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
360102008308	Putative methyltransferase; Region: Methyltransf_20; pfam12147
360102008309	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
360102008310	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
360102008311	putative acyl-acceptor binding pocket; other site
360102008312	Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]; Region: COG4589
360102008313	CDP-diglyceride synthetase [Lipid metabolism]; Region: CdsA; COG0575
360102008314	Phosphatidylglycerophosphate synthase [Lipid metabolism]; Region: PgsA; COG0558
360102008315	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional; Region: PRK10792
360102008316	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Region: THF_DHG_CYH; pfam00763
360102008317	NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Region: NAD_bind_m-THF_DH_Cyclohyd; cd01080
360102008318	homodimer interface [polypeptide binding]; other site
360102008319	NADP binding site [chemical binding]; other site
360102008320	substrate binding site [chemical binding]; other site
360102008321	ribosome-associated protein; Provisional; Region: PRK11507
360102008322	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102008323	cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260
360102008324	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
360102008325	active site
360102008326	HIGH motif; other site
360102008327	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
360102008328	KMSKS motif; other site
360102008329	Anticodon-binding domain of cysteinyl tRNA synthetases; Region: Anticodon_Ia_Cys; cd07963
360102008330	tRNA binding surface [nucleotide binding]; other site
360102008331	anticodon binding site; other site
360102008332	cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these...; Region: cyclophilin_EcCYP_like; cd01920
360102008333	substrate binding site [chemical binding]; other site
360102008334	Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain; Region: MPP_YbbF-LpxH; cd07398
360102008335	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
360102008336	putative active site [active]
360102008337	putative metal binding site [ion binding]; other site
360102008338	Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Region: PurE; COG0041
360102008339	phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed; Region: PRK06019
360102008340	ATP-grasp domain; Region: ATP-grasp; pfam02222
360102008341	Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3127
360102008342	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
360102008343	FtsX-like permease family; Region: FtsX; pfam02687
360102008344	FtsX-like permease family; Region: FtsX; pfam02687
360102008345	putative ABC transporter ATP-binding protein YbbA; Provisional; Region: PRK10584
360102008346	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
360102008347	Walker A/P-loop; other site
360102008348	ATP binding site [chemical binding]; other site
360102008349	Q-loop/lid; other site
360102008350	ABC transporter signature motif; other site
360102008351	Walker B; other site
360102008352	D-loop; other site
360102008353	H-loop/switch region; other site
360102008354	Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity; Region: Lysophospholipase_L1_like; cd01822
360102008355	active site
360102008356	catalytic triad [active]
360102008357	oxyanion hole [active]
360102008358	switch loop; other site
360102008359	oxidoreductase; Provisional; Region: PRK08017
360102008360	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
360102008361	NAD(P) binding site [chemical binding]; other site
360102008362	active site
360102008363	Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]; Region: COG3118
360102008364	ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria; Region: ybbN; cd02956
360102008365	Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330
360102008366	Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form...; Region: Band_7_stomatin_like; cd03403
360102008367	Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: COG1585
360102008368	DNA-binding transcriptional regulator CueR; Provisional; Region: PRK10227
360102008369	Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators; Region: HTH_CueR; cd01108
360102008370	DNA binding residues [nucleotide binding]
360102008371	dimer interface [polypeptide binding]; other site
360102008372	copper binding site [ion binding]; other site
360102008373	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
360102008374	metal-binding site [ion binding]
360102008375	copper exporting ATPase; Provisional; Region: copA; PRK10671
360102008376	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
360102008377	metal-binding site [ion binding]
360102008378	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
360102008379	metal-binding site [ion binding]
360102008380	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
360102008381	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102008382	motif II; other site
360102008383	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3735
360102008384	This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS)...; Region: YbaK_deacylase; cd00002
360102008385	putative deacylase active site [active]
360102008386	5'-nucleotidase, C-terminal domain; Region: 5_nucleotid_C; pfam02872
360102008387	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
360102008388	Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain; Region: MPP_UshA_N; cd07405
360102008389	active site
360102008390	metal binding site [ion binding]; metal-binding site
360102008391	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
360102008392	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102008393	Major Facilitator Superfamily; Region: MFS_1; pfam07690
360102008394	putative substrate translocation pore; other site
360102008395	putative cation:proton antiport protein; Provisional; Region: PRK10669
360102008396	Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]; Region: RosB; COG4651
360102008397	TrkA-N domain; Region: TrkA_N; pfam02254
360102008398	inosine/guanosine kinase; Provisional; Region: PRK15074
360102008399	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
360102008400	substrate binding site [chemical binding]; other site
360102008401	ATP binding site [chemical binding]; other site
360102008402	LPS O-antigen length regulator; Provisional; Region: PRK10381
360102008403	Chain length determinant protein; Region: Wzz; pfam02706
360102008404	G-rich domain on putative tyrosine kinase; Region: GNVR; pfam13807
360102008405	phosphomannomutase CpsG; Provisional; Region: PRK15414
360102008406	The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a...; Region: PMM_PGM; cd03089
360102008407	active site
360102008408	substrate binding site [chemical binding]; other site
360102008409	metal binding site [ion binding]; metal-binding site
360102008410	Glycosyltransferase like family 2; Region: Glyco_tranf_2_3; pfam13641
360102008411	WfgS and WfeV are involved in O-antigen biosynthesis; Region: GT_2_WfgS_like; cd06433
360102008412	metal-binding site
360102008413	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Region: GMP_PMI; TIGR01479
360102008414	GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase; cd02509
360102008415	Substrate binding site; other site
360102008416	Mannose-6-phosphate isomerase; Region: MannoseP_isomer; pfam01050
360102008417	GDP-fucose synthetase, extended (e) SDRs; Region: GDP_FS_SDR_e; cd05239
360102008418	GDP-4-keto-6-deoxymannose-3, 5-epimerase-4-reductase; Region: PLN02725
360102008419	NADP binding site [chemical binding]; other site
360102008420	active site
360102008421	putative substrate binding site [chemical binding]; other site
360102008422	GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]; Region: Gmd; COG1089
360102008423	GDP-mannose 4,6 dehydratase, extended (e) SDRs; Region: GDP_MD_SDR_e; cd05260
360102008424	substrate binding site [chemical binding]; other site
360102008425	active site
360102008426	GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]; Region: Gmd; COG1089
360102008427	GDP-mannose 4,6 dehydratase, extended (e) SDRs; Region: GDP_MD_SDR_e; cd05260
360102008428	NADP-binding site; other site
360102008429	homotetramer interface [polypeptide binding]; other site
360102008430	homodimer interface [polypeptide binding]; other site
360102008431	active site
360102008432	This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the...; Region: GT1_mtfB_like; cd03809
360102008433	Glycosyltransferase Family 4; Region: Glyco_transf_4; pfam13439
360102008434	Glycosyl transferases group 1; Region: Glyco_trans_1_4; pfam13692
360102008435	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
360102008436	Protoporphyrinogen oxidase [Coenzyme metabolism]; Region: HemY; COG1232
360102008437	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
360102008438	NAD dependent epimerase/dehydratase family; Region: Epimerase; pfam01370
360102008439	NAD(P) binding site [chemical binding]; other site
360102008440	active site
360102008441	lipopolysaccharide biosynthesis protein RfbH; Provisional; Region: PRK15407
360102008442	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
360102008443	inhibitor-cofactor binding pocket; inhibition site
360102008444	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102008445	catalytic residue [active]
360102008446	CDP-D-glucose 4,6-dehydratase, extended (e) SDRs; Region: CDP_GD_SDR_e; cd05252
360102008447	NAD binding site [chemical binding]; other site
360102008448	homotetramer interface [polypeptide binding]; other site
360102008449	homodimer interface [polypeptide binding]; other site
360102008450	substrate binding site [chemical binding]; other site
360102008451	active site
360102008452	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
360102008453	Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure...; Region: GCD1; COG1208
360102008454	G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose; Region: G1P_cytidylyltransferase; cd02524
360102008455	substrate binding site; other site
360102008456	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated; Region: PRK07609
360102008457	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
360102008458	catalytic loop [active]
360102008459	iron binding site [ion binding]; other site
360102008460	NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN; Region: flavin_oxioreductase; cd06189
360102008461	FAD binding pocket [chemical binding]; other site
360102008462	FAD binding motif [chemical binding]; other site
360102008463	phosphate binding motif [ion binding]; other site
360102008464	beta-alpha-beta structure motif; other site
360102008465	NAD binding pocket [chemical binding]; other site
360102008466	ferrochelatase; Reviewed; Region: hemH; PRK00035
360102008467	Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_N; cd03411
360102008468	C-terminal domain interface [polypeptide binding]; other site
360102008469	active site
360102008470	Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_C; cd00419
360102008471	active site
360102008472	N-terminal domain interface [polypeptide binding]; other site
360102008473	adenylate kinase; Reviewed; Region: adk; PRK00279
360102008474	Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for...; Region: ADK; cd01428
360102008475	AMP-binding site [chemical binding]; other site
360102008476	ATP-AMP (Ap5A)-binding site [chemical binding]; other site
360102008477	heat shock protein 90; Provisional; Region: PRK05218
360102008478	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102008479	ATP binding site [chemical binding]; other site
360102008480	Mg2+ binding site [ion binding]; other site
360102008481	G-X-G motif; other site
360102008482	Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]; Region: RecR; COG0353
360102008483	RecR protein; Region: RecR; pfam02132
360102008484	TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR.  RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a...; Region: TOPRIM_recR; cd01025
360102008485	putative active site [active]
360102008486	putative metal-binding site [ion binding]; other site
360102008487	tetramer interface [polypeptide binding]; other site
360102008488	hypothetical protein; Validated; Region: PRK00153
360102008489	DNA polymerase III subunits gamma and tau; Validated; Region: PRK07994
360102008490	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008491	Walker A motif; other site
360102008492	ATP binding site [chemical binding]; other site
360102008493	Walker B motif; other site
360102008494	arginine finger; other site
360102008495	DNA polymerase III subunits gamma and tau domain III; Region: DNA_pol3_gamma3; pfam12169
360102008496	DNA polymerase III subunits tau domain IV DnaB-binding; Region: DNA_pol3_tau_4; pfam12168
360102008497	DNA polymerase III tau subunit V interacting with alpha; Region: DNA_pol3_tau_5; pfam12170
360102008498	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
360102008499	active site
360102008500	hypothetical protein; Provisional; Region: PRK10527
360102008501	Primosomal replication protein priB and priC; Region: priB_priC; pfam07445
360102008502	hypothetical protein; Provisional; Region: PRK11038
360102008503	Mechanosensitive ion channel inner membrane domain 1; Region: MscS_TM; pfam12794
360102008504	Mechanosensitive ion channel; Region: MS_channel; pfam00924
360102008505	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102008506	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102008507	DNA-binding interface [nucleotide binding]; DNA binding site
360102008508	Integrase core domain; Region: rve; pfam00665
360102008509	transposase/IS protein; Provisional; Region: PRK09183
360102008510	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008511	Walker A motif; other site
360102008512	ATP binding site [chemical binding]; other site
360102008513	Walker B motif; other site
360102008514	Mechanosensitive ion channel porin domain; Region: MscS_porin; pfam12795
360102008515	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: COG3264
360102008516	Mechanosensitive ion channel inner membrane domain 1; Region: MscS_TM; pfam12794
360102008517	Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]; Region: DsrE; COG1553
360102008518	DNA-binding transcriptional repressor AcrR; Provisional; Region: PRK10668
360102008519	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
360102008520	MAATS-type transcriptional repressor, C-terminal region; Region: TetR_C_2; pfam08361
360102008521	multidrug efflux system transporter AcrA; Provisional; Region: PRK15030
360102008522	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102008523	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102008524	multidrug efflux system protein AcrB; Provisional; Region: PRK15127
360102008525	Protein export membrane protein; Region: SecD_SecF; cl14618
360102008526	50S ribosomal protein L31 type B; Reviewed; Region: rpmE2; PRK01678
360102008527	50S ribosomal protein L36; Validated; Region: rpmJ; PRK00831
360102008528	Hha toxicity attenuator; Provisional; Region: PRK10667
360102008529	gene expression modulator; Provisional; Region: PRK10945
360102008530	Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]; Region: Ada; COG0350
360102008531	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
360102008532	DNA binding site [nucleotide binding]
360102008533	active site
360102008534	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3126
360102008535	acyl-CoA thioesterase II; Provisional; Region: PRK10526
360102008536	Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP)...; Region: Thioesterase_II_repeat2; cd03445
360102008537	active site
360102008538	Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP)...; Region: Thioesterase_II_repeat1; cd03444
360102008539	catalytic triad [active]
360102008540	dimer interface [polypeptide binding]; other site
360102008541	ammonium transporter; Provisional; Region: PRK10666
360102008542	nitrogen regulatory protein P-II 2; Provisional; Region: PRK10665
360102008543	Nitrogen regulatory protein P-II; Region: P-II; smart00938
360102008544	putative multidrug transporter membrane\ATP-binding components; Provisional; Region: PRK10790
360102008545	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102008546	ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Region: ABCC_Glucan_exporter_like; cd03254
360102008547	Walker A/P-loop; other site
360102008548	ATP binding site [chemical binding]; other site
360102008549	Q-loop/lid; other site
360102008550	ABC transporter signature motif; other site
360102008551	Walker B; other site
360102008552	D-loop; other site
360102008553	H-loop/switch region; other site
360102008554	putative multidrug transporter membrane\ATP-binding components; Provisional; Region: PRK10789
360102008555	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102008556	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102008557	Walker A/P-loop; other site
360102008558	ATP binding site [chemical binding]; other site
360102008559	Q-loop/lid; other site
360102008560	ABC transporter signature motif; other site
360102008561	Walker B; other site
360102008562	D-loop; other site
360102008563	H-loop/switch region; other site
360102008564	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
360102008565	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
360102008566	putative DNA binding site [nucleotide binding]; other site
360102008567	putative Zn2+ binding site [ion binding]; other site
360102008568	AsnC family; Region: AsnC_trans_reg; pfam01037
360102008569	Cysteine synthase [Amino acid transport and metabolism]; Region: CysK; COG0031
360102008570	Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan...; Region: Trp-synth-beta_II; cl00342
360102008571	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102008572	catalytic residue [active]
360102008573	thiamin pyrimidine pyrophosphate hydrolase; Provisional; Region: PRK15126
360102008574	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102008575	active site
360102008576	motif I; other site
360102008577	motif II; other site
360102008578	ABC-type uncharacterized transport system, periplasmic component [General function prediction only]; Region: COG4533
360102008579	Sugar transport-related sRNA regulator N-term; Region: SgrR_N; pfam12793
360102008580	The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like; cl01709
360102008581	ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In...; Region: ExsB; cd01995
360102008582	Ligand Binding Site [chemical binding]; other site
360102008583	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
360102008584	active site
360102008585	Helix-hairpin-helix motif; Region: HHH_3; pfam12836
360102008586	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cl14786
360102008587	periplasmic folding chaperone; Provisional; Region: PRK10788
360102008588	SurA N-terminal domain; Region: SurA_N_3; cl07813
360102008589	PPIC-type PPIASE domain; Region: Rotamase_2; pfam13145
360102008590	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
360102008591	IHF dimer interface [polypeptide binding]; other site
360102008592	IHF - DNA interface [nucleotide binding]; other site
360102008593	DNA-binding ATP-dependent protease La; Provisional; Region: PRK10787
360102008594	Found in ATP-dependent protease La (LON); Region: LON; smart00464
360102008595	Found in ATP-dependent protease La (LON); Region: LON; smart00464
360102008596	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008597	Walker A motif; other site
360102008598	ATP binding site [chemical binding]; other site
360102008599	Walker B motif; other site
360102008600	arginine finger; other site
360102008601	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
360102008602	ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342
360102008603	ClpX C4-type zinc finger; Region: zf-C4_ClpX; pfam06689
360102008604	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008605	Walker A motif; other site
360102008606	ATP binding site [chemical binding]; other site
360102008607	Walker B motif; other site
360102008608	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
360102008609	Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: ClpP; COG0740
360102008610	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
360102008611	oligomer interface [polypeptide binding]; other site
360102008612	active site residues [active]
360102008613	trigger factor; Provisional; Region: tig; PRK01490
360102008614	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
360102008615	Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698
360102008616	transcriptional regulator BolA; Provisional; Region: PRK11628
360102008617	hypothetical protein; Provisional; Region: PRK11627
360102008618	Uncharacterized lipoprotein; Region: Lipoprotein_16; pfam03923
360102008619	muropeptide transporter; Reviewed; Region: ampG; PRK11902
360102008620	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102008621	putative substrate translocation pore; other site
360102008622	hypothetical protein; Provisional; Region: PRK11528
360102008623	cytochrome o ubiquinol oxidase subunit II; Provisional; Region: PRK10525
360102008624	Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; pfam00116
360102008625	COX Aromatic Rich Motif; Region: COX_ARM; pfam06481
360102008626	Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]; Region: CyoB; COG0843
360102008627	Ubiquinol oxidase subunit I.  Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane.  It catalyzes the reduction of O2 and simultaneously pumps protons...; Region: Ubiquinol_Oxidase_I; cd01662
360102008628	D-pathway; other site
360102008629	Putative ubiquinol binding site [chemical binding]; other site
360102008630	Low-spin heme (heme b) binding site [chemical binding]; other site
360102008631	Putative water exit pathway; other site
360102008632	Binuclear center (heme o3/CuB) [ion binding]; other site
360102008633	K-pathway; other site
360102008634	Putative proton exit pathway; other site
360102008635	Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane.  It catalyzes the reduction of O2 and simultaneously...; Region: Ubiquinol_oxidase_III; cd02863
360102008636	Subunit I/III interface [polypeptide binding]; other site
360102008637	Subunit III/IV interface [polypeptide binding]; other site
360102008638	cytochrome o ubiquinol oxidase subunit IV; Provisional; Region: PRK10582
360102008639	protoheme IX farnesyltransferase; Provisional; Region: PRK13362
360102008640	UbiA prenyltransferase family; Region: UbiA; pfam01040
360102008641	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102008642	Major Facilitator Superfamily; Region: MFS_1; pfam07690
360102008643	putative substrate translocation pore; other site
360102008644	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1666
360102008645	Proteins similar to Escherichia coli YajQ; Region: YajQ_like; cd11740
360102008646	2-dehydropantoate 2-reductase; Reviewed; Region: PRK06522
360102008647	Ketopantoate reductase PanE/ApbA; Region: ApbA; pfam02558
360102008648	Ketopantoate reductase PanE/ApbA C terminal; Region: ApbA_C; pfam08546
360102008649	oxidative-stress-resistance chaperone; Provisional; Region: PRK11574
360102008650	Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Region: GATase1_DJ-1; cd03135
360102008651	conserved cys residue [active]
360102008652	tRNA s(4)U8 sulfurtransferase; Provisional; Region: PRK01269
360102008653	THUMP domain of thiamine biosynthesis protein ThiI; Region: THUMP_ThiI; cd11716
360102008654	ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide; Region: ThiI; cd01712
360102008655	Ligand Binding Site [chemical binding]; other site
360102008656	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
360102008657	active site residue [active]
360102008658	exodeoxyribonuclease VII small subunit; Provisional; Region: PRK00977
360102008659	Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142
360102008660	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
360102008661	substrate binding pocket [chemical binding]; other site
360102008662	chain length determination region; other site
360102008663	substrate-Mg2+ binding site; other site
360102008664	catalytic residues [active]
360102008665	aspartate-rich region 1; other site
360102008666	active site lid residues [active]
360102008667	aspartate-rich region 2; other site
360102008668	1-deoxy-D-xylulose-5-phosphate synthase; Provisional; Region: PRK05444
360102008669	Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products...; Region: TPP_DXS; cd02007
360102008670	TPP-binding site; other site
360102008671	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
360102008672	PYR/PP interface [polypeptide binding]; other site
360102008673	dimer interface [polypeptide binding]; other site
360102008674	TPP binding site [chemical binding]; other site
360102008675	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
360102008676	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102008677	Phosphatidylglycerophosphatase A; a bacterial membrane-associated enzyme involved in lipid metabolism; Region: PgpA; cd06971
360102008678	tetramer interfaces [polypeptide binding]; other site
360102008679	binuclear metal-binding site [ion binding]; other site
360102008680	thiamine monophosphate kinase; Provisional; Region: PRK05731
360102008681	ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the...; Region: ThiL; cd02194
360102008682	ATP binding site [chemical binding]; other site
360102008683	dimerization interface [polypeptide binding]; other site
360102008684	Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus...; Region: Terminator_NusB; cd00619
360102008685	putative RNA binding site [nucleotide binding]; other site
360102008686	lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I; Region: Lumazine_synthase-I; cd09209
360102008687	homopentamer interface [polypeptide binding]; other site
360102008688	active site
360102008689	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional; Region: ribD; PRK10786
360102008690	Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the...; Region: Riboflavin_deaminase-reductase; cd01284
360102008691	catalytic motif [active]
360102008692	Zn binding site [ion binding]; other site
360102008693	RibD C-terminal domain; Region: RibD_C; cl17279
360102008694	transcriptional regulator NrdR; Validated; Region: nrdR; PRK00464
360102008695	ATP cone domain; Region: ATP-cone; pfam03477
360102008696	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102008697	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102008698	preprotein translocase subunit SecF; Reviewed; Region: secF; PRK13022
360102008699	SecD/SecF GG Motif; Region: Sec_GG; pfam07549
360102008700	Protein export membrane protein; Region: SecD_SecF; pfam02355
360102008701	SecD export protein N-terminal TM region; Region: SecD-TM1; pfam13721
360102008702	preprotein translocase subunit SecD; Reviewed; Region: secD; PRK05812
360102008703	SecD/SecF GG Motif; Region: Sec_GG; pfam07549
360102008704	protein-export membrane protein, SecD/SecF family; Region: 2A0604s01; TIGR00916
360102008705	preprotein translocase subunit YajC; Validated; Region: yajC; PRK05585
360102008706	queuine tRNA-ribosyltransferase; Provisional; Region: tgt; PRK00112
360102008707	Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]; Region: Tgt; COG0343
360102008708	S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional; Region: queA; PRK00147
360102008709	S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Region: queA; TIGR00113
360102008710	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3124
360102008711	peroxidase; Provisional; Region: PRK15000
360102008712	Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides; Region: PRX_Typ2cys; cd03015
360102008713	dimer interface [polypeptide binding]; other site
360102008714	decamer (pentamer of dimers) interface [polypeptide binding]; other site
360102008715	catalytic triad [active]
360102008716	peroxidatic and resolving cysteines [active]
360102008717	Gamma-glutamyltransferase [Amino acid transport and metabolism]; Region: Ggt; cl08040
360102008718	Gamma-glutamyltranspeptidase; Region: G_glu_transpept; pfam01019
360102008719	Gamma-glutamyltransferase [Amino acid transport and metabolism]; Region: Ggt; COG0405
360102008720	carbonyl reductase sniffer-like, classical (c) SDRs; Region: carb_red_sniffer_like_SDR_c; cd05325
360102008721	C factor cell-cell signaling protein; Provisional; Region: PRK09009
360102008722	NADP binding site [chemical binding]; other site
360102008723	homodimer interface [polypeptide binding]; other site
360102008724	active site
360102008725	maltodextrin glucosidase; Provisional; Region: PRK10785
360102008726	N-terminal Early set domain associated with the catalytic domain of cyclomaltodextrinase and pullulan-degrading enzymes; Region: E_set_CDase_PDE_N; cd02857
360102008727	homodimer interface [polypeptide binding]; other site
360102008728	Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins; Region: AmyAc_CMD; cd11338
360102008729	active site
360102008730	homodimer interface [polypeptide binding]; other site
360102008731	catalytic site [active]
360102008732	putative proline-specific permease; Provisional; Region: proY; PRK10580
360102008733	Spore germination protein; Region: Spore_permease; cl17796
360102008734	Branched-chain amino acid transport protein; Region: Branch_AA_trans; cl00547
360102008735	PBP superfamily domain; Region: PBP_like_2; cl17296
360102008736	phosphate regulon sensor protein; Provisional; Region: phoR; PRK11006
360102008737	Domain of unknown function (DUF3329); Region: DUF3329; pfam11808
360102008738	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
360102008739	putative active site [active]
360102008740	heme pocket [chemical binding]; other site
360102008741	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102008742	dimer interface [polypeptide binding]; other site
360102008743	phosphorylation site [posttranslational modification]
360102008744	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102008745	ATP binding site [chemical binding]; other site
360102008746	Mg2+ binding site [ion binding]; other site
360102008747	G-X-G motif; other site
360102008748	transcriptional regulator PhoB; Provisional; Region: PRK10161
360102008749	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102008750	active site
360102008751	phosphorylation site [posttranslational modification]
360102008752	intermolecular recognition site; other site
360102008753	dimerization interface [polypeptide binding]; other site
360102008754	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102008755	DNA binding site [nucleotide binding]
360102008756	exonuclease subunit SbcD; Provisional; Region: PRK10966
360102008757	Mre11 nuclease, N-terminal metallophosphatase domain; Region: MPP_Mre11_N; cd00840
360102008758	active site
360102008759	metal binding site [ion binding]; metal-binding site
360102008760	DNA binding site [nucleotide binding]
360102008761	Type 5 capsule protein repressor C-terminal domain; Region: SbcD_C; pfam12320
360102008762	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102008763	AAA domain; Region: AAA_23; pfam13476
360102008764	Walker A/P-loop; other site
360102008765	ATP binding site [chemical binding]; other site
360102008766	Q-loop/lid; other site
360102008767	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102008768	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102008769	DNA-binding interface [nucleotide binding]; DNA binding site
360102008770	Integrase core domain; Region: rve; pfam00665
360102008771	transposase/IS protein; Provisional; Region: PRK09183
360102008772	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008773	Walker A motif; other site
360102008774	ATP binding site [chemical binding]; other site
360102008775	Walker B motif; other site
360102008776	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102008777	ABC transporter signature motif; other site
360102008778	Walker B; other site
360102008779	D-loop; other site
360102008780	H-loop/switch region; other site
360102008781	fructokinase; Reviewed; Region: PRK09557
360102008782	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
360102008783	nucleotide binding site [chemical binding]; other site
360102008784	recombination associated protein; Reviewed; Region: rdgC; PRK00321
360102008785	hypothetical protein; Provisional; Region: PRK10579
360102008786	Shikimate kinase [Amino acid transport and metabolism]; Region: AroK; COG0703
360102008787	Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis...; Region: SK; cd00464
360102008788	ADP binding site [chemical binding]; other site
360102008789	magnesium binding site [ion binding]; other site
360102008790	putative shikimate binding site; other site
360102008791	Phospholipid N-methyltransferase [Lipid metabolism]; Region: COG3963
360102008792	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102008793	c-di-GMP-binding protein [Signal transduction mechanisms]; Region: COG5581
360102008794	Flagellar regulator YcgR; Region: YcgR; pfam07317
360102008795	PilZ domain; Region: PilZ; pfam07238
360102008796	Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19; Region: ALDH_F18-19_ProA-GPR; cd07079
360102008797	gamma-glutamyl phosphate reductase; Region: proA; TIGR00407
360102008798	putative catalytic cysteine [active]
360102008799	gamma-glutamyl kinase; Provisional; Region: PRK05429
360102008800	AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine)...; Region: AAK_G5K_ProB; cd04242
360102008801	nucleotide binding site [chemical binding]; other site
360102008802	homotetrameric interface [polypeptide binding]; other site
360102008803	putative phosphate binding site [ion binding]; other site
360102008804	putative allosteric binding site; other site
360102008805	PUA domain; Region: PUA; pfam01472
360102008806	DNA-binding transcriptional regulator Crl; Provisional; Region: PRK10984
360102008807	fermentation/respiration switch protein; Reviewed; Region: frsA; PRK05077
360102008808	The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid.  N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a...; Region: Ntn_hydrolase; cl00467
360102008809	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
360102008810	active site
360102008811	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3397
360102008812	Chitin binding domain; Region: Chitin_bind_3; pfam03067
360102008813	PKD domain; Region: PKD; pfam00801
360102008814	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102008815	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102008816	LysR substrate binding domain; Region: LysR_substrate; pfam03466
360102008817	dimerization interface [polypeptide binding]; other site
360102008818	Xaa-His dipeptidase; Region: aa-his-dipept; TIGR01893
360102008819	M20 Peptidase D has specificity for beta-alanyl-L-histidine dipeptide; Region: M20_pepD; cd03890
360102008820	metal binding site [ion binding]; metal-binding site
360102008821	dimer interface [polypeptide binding]; other site
360102008822	DNA Polymerase IV/Kappa; Region: PolY_Pol_IV_kappa; cd03586
360102008823	active site
360102008824	DNA polymerase IV; Validated; Region: PRK02406
360102008825	DNA binding site [nucleotide binding]
360102008826	Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]; Region: UgpQ; COG0584
360102008827	Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins; Region: GDPD_Rv2277c_like; cd08580
360102008828	putative active site [active]
360102008829	catalytic site [active]
360102008830	putative metal binding site [ion binding]; other site
360102008831	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2991
360102008832	Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]; Region: ApbE; COG1477
360102008833	ApbE family; Region: ApbE; pfam02424
360102008834	Na(+)-translocating NADH-quinone reductase subunit F; Provisional; Region: PRK05464
360102008835	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
360102008836	catalytic loop [active]
360102008837	iron binding site [ion binding]; other site
360102008838	Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase; Region: NADH_quinone_reductase; cd06188
360102008839	FAD binding pocket [chemical binding]; other site
360102008840	FAD binding motif [chemical binding]; other site
360102008841	phosphate binding motif [ion binding]; other site
360102008842	beta-alpha-beta structure motif; other site
360102008843	NAD binding pocket [chemical binding]; other site
360102008844	Na(+)-translocating NADH-quinone reductase subunit E; Provisional; Region: PRK02830
360102008845	Na(+)-translocating NADH-quinone reductase subunit D; Validated; Region: PRK09292
360102008846	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]; Region: NqrC; COG2869
360102008847	NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; Region: nqrC; TIGR01938
360102008848	Na(+)-translocating NADH-quinone reductase subunit B; Provisional; Region: PRK05349
360102008849	Na(+)-translocating NADH-quinone reductase subunit A; Provisional; Region: PRK05352
360102008850	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
360102008851	E3 interaction surface; other site
360102008852	lipoyl attachment site [posttranslational modification]; other site
360102008853	NQRA C-terminal domain; Region: NQRA_SLBB; pfam11973
360102008854	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3034
360102008855	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
360102008856	Predicted glutamine amidotransferase [General function prediction only]; Region: COG0121
360102008857	Glutamine amidotransferases class-II (Gn-AT)_YafJ-type.  YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea.  YafJ has a conserved structural fold similar to those of other class II...; Region: YafJ; cd01908
360102008858	putative active site [active]
360102008859	putative dimer interface [polypeptide binding]; other site
360102008860	Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006
360102008861	dimer interface [polypeptide binding]; other site
360102008862	active site
360102008863	acyl-CoA dehydrogenase; Reviewed; Region: fadE; PRK09463
360102008864	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
360102008865	active site
360102008866	Domain of unknown function (DUF1974); Region: DUF1974; pfam09317
360102008867	Adhesin biosynthesis transcription regulatory protein; Region: PapB; cl04012
360102008868	Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]; Region: Spy; COG3914
360102008869	filamentous hemagglutinin family N-terminal domain; Region: adhes_NPXG; TIGR01901
360102008870	Hemolysin activation/secretion protein [Intracellular trafficking and secretion]; Region: FhaC; COG2831
360102008871	POTRA domain, ShlB-type; Region: POTRA_2; pfam08479
360102008872	M20 Peptidase beta-alanine synthase, an amidohydrolase; Region: M20_bAS; cd03884
360102008873	allantoate amidohydrolase; Reviewed; Region: PRK09290
360102008874	active site
360102008875	metal binding site [ion binding]; metal-binding site
360102008876	dimer interface [polypeptide binding]; other site
360102008877	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
360102008878	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102008879	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102008880	DNA-binding interface [nucleotide binding]; DNA binding site
360102008881	Integrase core domain; Region: rve; pfam00665
360102008882	transposase/IS protein; Provisional; Region: PRK09183
360102008883	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008884	Walker A motif; other site
360102008885	ATP binding site [chemical binding]; other site
360102008886	Walker B motif; other site
360102008887	Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]; Region: COG0075
360102008888	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102008889	catalytic residue [active]
360102008890	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
360102008891	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
360102008892	Walker A/P-loop; other site
360102008893	ATP binding site [chemical binding]; other site
360102008894	Q-loop/lid; other site
360102008895	ABC transporter signature motif; other site
360102008896	Walker B; other site
360102008897	D-loop; other site
360102008898	H-loop/switch region; other site
360102008899	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102008900	dimer interface [polypeptide binding]; other site
360102008901	conserved gate region; other site
360102008902	putative PBP binding loops; other site
360102008903	ABC-ATPase subunit interface; other site
360102008904	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
360102008905	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102008906	dimer interface [polypeptide binding]; other site
360102008907	conserved gate region; other site
360102008908	putative PBP binding loops; other site
360102008909	ABC-ATPase subunit interface; other site
360102008910	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
360102008911	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102008912	substrate binding pocket [chemical binding]; other site
360102008913	membrane-bound complex binding site; other site
360102008914	hinge residues; other site
360102008915	Transcriptional regulators [Transcription]; Region: RpiR; COG1737
360102008916	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
360102008917	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
360102008918	putative active site [active]
360102008919	Protein of unknown function (DUF4089); Region: DUF4089; pfam13318
360102008920	amidase; Provisional; Region: PRK09201
360102008921	Amidase; Region: Amidase; cl11426
360102008922	Protein of unknown function (DUF3225); Region: DUF3225; pfam11533
360102008923	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102008924	putative substrate translocation pore; other site
360102008925	Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]; Region: AzlC; COG1296
360102008926	putative L-valine exporter; Provisional; Region: PRK10408
360102008927	transcriptional repressor MprA; Provisional; Region: PRK10870
360102008928	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
360102008929	multidrug efflux system protein EmrA; Provisional; Region: PRK15136
360102008930	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102008931	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102008932	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
360102008933	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102008934	putative substrate translocation pore; other site
360102008935	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102008936	putative methyltransferase; Provisional; Region: PRK10864
360102008937	RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; pfam08032
360102008938	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
360102008939	thioredoxin 2; Provisional; Region: PRK10996
360102008940	zinc-ribbon domain; Region: zinc_ribbon_5; cl11777
360102008941	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
360102008942	catalytic residues [active]
360102008943	Uncharacterized conserved protein [Function unknown]; Region: COG3148
360102008944	Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042
360102008945	CoA binding domain; Region: CoA_binding_2; pfam13380
360102008946	Succinyl-CoA ligase like flavodoxin domain; Region: Succ_CoA_lig; pfam13607
360102008947	ATP-grasp domain; Region: ATP-grasp_5; pfam13549
360102008948	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
360102008949	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
360102008950	Coenzyme A binding pocket [chemical binding]; other site
360102008951	phosphatidylserine synthase; Provisional; Region: pssA; PRK09428
360102008952	Catalytic domain, repeat 1, of phosphatidylserine synthases from gram-negative bacteria; Region: PLDc_PSS_G_neg_1; cd09134
360102008953	domain interface [polypeptide binding]; other site
360102008954	putative active site [active]
360102008955	catalytic site [active]
360102008956	Catalytic domain, repeat 2, of phosphatidylserine synthases from gram-negative bacteria; Region: PLDc_PSS_G_neg_2; cd09136
360102008957	domain interface [polypeptide binding]; other site
360102008958	putative active site [active]
360102008959	catalytic site [active]
360102008960	lipoprotein; Provisional; Region: PRK10759
360102008961	protein disaggregation chaperone; Provisional; Region: PRK10865
360102008962	Clp amino terminal domain; Region: Clp_N; pfam02861
360102008963	Clp amino terminal domain; Region: Clp_N; pfam02861
360102008964	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008965	Walker A motif; other site
360102008966	ATP binding site [chemical binding]; other site
360102008967	Walker B motif; other site
360102008968	arginine finger; other site
360102008969	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008970	Walker A motif; other site
360102008971	ATP binding site [chemical binding]; other site
360102008972	Walker B motif; other site
360102008973	arginine finger; other site
360102008974	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
360102008975	hypothetical protein; Provisional; Region: PRK10723
360102008976	Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]; Region: yfiH; COG1496
360102008977	23S rRNA pseudouridine synthase D; Provisional; Region: rluD; PRK11180
360102008978	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
360102008979	RNA binding surface [nucleotide binding]; other site
360102008980	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
360102008981	active site
360102008982	outer membrane biogenesis protein BamD; Provisional; Region: PRK10866
360102008983	RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal...; Region: RaiA; cd00552
360102008984	30S subunit binding site; other site
360102008985	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102008986	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102008987	chorismate mutase domain of proteobacterial P-protein, clade 1; Region: CM_P_1; TIGR01797
360102008988	Prephenate dehydratase; Region: PDT; pfam00800
360102008989	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102008990	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102008991	DNA-binding interface [nucleotide binding]; DNA binding site
360102008992	Integrase core domain; Region: rve; pfam00665
360102008993	transposase/IS protein; Provisional; Region: PRK09183
360102008994	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102008995	Walker A motif; other site
360102008996	ATP binding site [chemical binding]; other site
360102008997	Walker B motif; other site
360102008998	Uroporphyrin-III C-methyltransferase (S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); Region: SUMT; cd11642
360102008999	Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]; Region: DPH5; COG1798
360102009000	active site
360102009001	SAM binding site [chemical binding]; other site
360102009002	homodimer interface [polypeptide binding]; other site
360102009003	sulfate adenylyltransferase, small subunit; Region: CysD; TIGR02039
360102009004	This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713
360102009005	Active Sites [active]
360102009006	sulfate adenylyltransferase subunit 1; Provisional; Region: cysN; PRK05124
360102009007	CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex; Region: CysN_ATPS; cd04166
360102009008	CysD dimerization site [polypeptide binding]; other site
360102009009	G1 box; other site
360102009010	putative GEF interaction site [polypeptide binding]; other site
360102009011	GTP/Mg2+ binding site [chemical binding]; other site
360102009012	Switch I region; other site
360102009013	G2 box; other site
360102009014	G3 box; other site
360102009015	Switch II region; other site
360102009016	G4 box; other site
360102009017	G5 box; other site
360102009018	CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN...; Region: CysN_NodQ_II; cd03695
360102009019	TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN...; Region: CysN_NoDQ_III; cd04095
360102009020	Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form...; Region: APSK; cd02027
360102009021	ligand-binding site [chemical binding]; other site
360102009022	hypothetical protein; Provisional; Region: PRK10726
360102009023	cell division protein FtsB; Reviewed; Region: ftsB; PRK00888
360102009024	Septum formation initiator [Cell division and chromosome partitioning]; Region: COG2919
360102009025	CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; Region: CDP-ME_synthetase; cd02516
360102009026	substrate binding site; other site
360102009027	dimer interface; other site
360102009028	MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis; Region: MECDP_synthase; cd00554
360102009029	homotrimer interaction site [polypeptide binding]; other site
360102009030	zinc binding site [ion binding]; other site
360102009031	CDP-binding sites; other site
360102009032	tRNA pseudouridine synthase D; Reviewed; Region: truD; PRK00984
360102009033	Pseudouridine synthase, similar to Escherichia coli TruD; Region: PseudoU_synth_EcTruD; cd02575
360102009034	Permutation of conserved domain; other site
360102009035	active site
360102009036	5'(3')-nucleotidase/polyphosphatase; Provisional; Region: surE; PRK00346
360102009037	protein-L-isoaspartate O-methyltransferase; Reviewed; Region: pcm; PRK00312
360102009038	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102009039	S-adenosylmethionine binding site [chemical binding]; other site
360102009040	lipoprotein NlpD; Provisional; Region: nlpD; PRK10871
360102009041	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
360102009042	Peptidase family M23; Region: Peptidase_M23; pfam01551
360102009043	RNA polymerase sigma factor RpoS; Validated; Region: PRK05657
360102009044	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
360102009045	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
360102009046	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
360102009047	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
360102009048	DNA binding residues [nucleotide binding]
360102009049	DNA mismatch repair protein MutS; Provisional; Region: PRK05399
360102009050	MutS domain I; Region: MutS_I; pfam01624
360102009051	MutS domain II; Region: MutS_II; pfam05188
360102009052	MutS domain III; Region: MutS_III; pfam05192
360102009053	ATP-binding cassette domain of MutS1 homolog; Region: ABC_MutS1; cd03284
360102009054	Walker A/P-loop; other site
360102009055	ATP binding site [chemical binding]; other site
360102009056	Q-loop/lid; other site
360102009057	ABC transporter signature motif; other site
360102009058	Walker B; other site
360102009059	D-loop; other site
360102009060	H-loop/switch region; other site
360102009061	ribose-5-phosphate isomerase B; Provisional; Region: PRK05571
360102009062	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
360102009063	Alcohol dehydrogenases of the MDR family; Region: Zn_ADH2; cd08256
360102009064	putative NAD(P) binding site [chemical binding]; other site
360102009065	catalytic Zn binding site [ion binding]; other site
360102009066	structural Zn binding site [ion binding]; other site
360102009067	short chain dehydrogenase; Provisional; Region: PRK06841
360102009068	classical (c) SDRs; Region: SDR_c; cd05233
360102009069	NAD(P) binding site [chemical binding]; other site
360102009070	active site
360102009071	dihydroxyacetone kinase subunit DhaK; Provisional; Region: PRK14481; cl10557
360102009072	Dihydroxyacetone kinase [Carbohydrate transport and metabolism]; Region: DAK1; COG2376
360102009073	DAK2 domain; Region: Dak2; pfam02734
360102009074	Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]; Region: DeoR; COG2390
360102009075	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102009076	Putative sugar-binding domain; Region: Sugar-bind; pfam04198
360102009077	arsenical pump membrane protein; Provisional; Region: PRK15445
360102009078	Anion permease ArsB.  These permeases have been shown to export arsenate and antimonite in eubacteria and archaea.  A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a...; Region: ArsB_permease; cd01118
360102009079	transmembrane helices; other site
360102009080	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
360102009081	dimerization interface [polypeptide binding]; other site
360102009082	putative DNA binding site [nucleotide binding]; other site
360102009083	putative Zn2+ binding site [ion binding]; other site
360102009084	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
360102009085	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102009086	substrate binding pocket [chemical binding]; other site
360102009087	membrane-bound complex binding site; other site
360102009088	hinge residues; other site
360102009089	Haem-binding domain; Region: Haem_bd; pfam14376
360102009090	Cytochrome c peroxidase [Inorganic ion transport and metabolism]; Region: MauG; COG1858
360102009091	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102009092	N-terminal plug; other site
360102009093	ligand-binding site [chemical binding]; other site
360102009094	Porin superfamily.  These outer membrane channels share a beta-barrel structure that differ in strand and shear number.  Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl17244
360102009095	ShET2 enterotoxin, N-terminal region; Region: Toxin_15; pfam07906
360102009096	Yersinia protein of unknown function (DUF3831); Region: DUF3831; pfam12908
360102009097	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
360102009098	active site
360102009099	Protein of unknown function (DUF3423); Region: DUF3423; pfam11903
360102009100	fumarate hydratase; Provisional; Region: PRK15389
360102009101	Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]; Region: TtdA; COG1951
360102009102	Fumarase C-terminus; Region: Fumerase_C; pfam05683
360102009103	Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]; Region: XylB; COG1070
360102009104	L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases; Region: FGGY_L-XK; cd07802
360102009105	putative N- and C-terminal domain interface [polypeptide binding]; other site
360102009106	putative active site [active]
360102009107	MgATP binding site [chemical binding]; other site
360102009108	catalytic site [active]
360102009109	metal binding site [ion binding]; metal-binding site
360102009110	putative xylulose binding site [chemical binding]; other site
360102009111	Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]; Region: SgaU; COG3623
360102009112	AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of...; Region: AP2Ec; cd00019
360102009113	AP (apurinic/apyrimidinic) site pocket; other site
360102009114	DNA interaction; other site
360102009115	Metal-binding active site; metal-binding site
360102009116	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102009117	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102009118	TM-ABC transporter signature motif; other site
360102009119	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102009120	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102009121	TM-ABC transporter signature motif; other site
360102009122	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
360102009123	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102009124	Walker A/P-loop; other site
360102009125	ATP binding site [chemical binding]; other site
360102009126	Q-loop/lid; other site
360102009127	ABC transporter signature motif; other site
360102009128	Walker B; other site
360102009129	D-loop; other site
360102009130	H-loop/switch region; other site
360102009131	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102009132	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102009133	Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs; Region: PBP1_LsrB_Quorum_Sensing; cd06302
360102009134	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
360102009135	ligand binding site [chemical binding]; other site
360102009136	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
360102009137	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
360102009138	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
360102009139	L-ribulose-5-phosphate 4-epimerase; Reviewed; Region: araD; PRK13213
360102009140	L-ribulose-5-phosphate 4-epimerase; Reviewed; Region: araD; PRK08193
360102009141	intersubunit interface [polypeptide binding]; other site
360102009142	active site
360102009143	Zn2+ binding site [ion binding]; other site
360102009144	anaerobic dimethyl sulfoxide reductase subunit A; Provisional; Region: PRK14990
360102009145	This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a  predicted...; Region: MopB_DmsA-EC; cd02770
360102009146	putative [Fe4-S4] binding site [ion binding]; other site
360102009147	putative molybdopterin cofactor binding site [chemical binding]; other site
360102009148	The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a  predicted...; Region: MopB_CT_DmsA-EC; cd02794
360102009149	putative molybdopterin cofactor binding site; other site
360102009150	DMSO reductase, iron-sulfur subunit; Region: DMSO_dmsB; TIGR02951
360102009151	4Fe-4S binding domain; Region: Fer4; cl02805
360102009152	DMSO reductase anchor subunit [General function prediction only]; Region: DmsC; COG3302
360102009153	twin-argninine leader-binding protein DmsD; Provisional; Region: PRK11621
360102009154	cytochrome b561; Provisional; Region: PRK11513
360102009155	Soluble cytochrome b562 [Energy production and conversion]; Region: CybC; COG3783
360102009156	catalase/hydroperoxidase HPI(I); Provisional; Region: PRK15061
360102009157	N-terminal catalytic domain of catalase-peroxidases; Region: catalase_peroxidase_1; cd00649
360102009158	dimer interface [polypeptide binding]; other site
360102009159	active site
360102009160	heme binding site [chemical binding]; other site
360102009161	C-terminal non-catalytic domain of catalase-peroxidases; Region: catalase_peroxidase_2; cd08200
360102009162	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879
360102009163	Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs; Region: PBP1_ribose_binding; cd06323
360102009164	ligand binding site [chemical binding]; other site
360102009165	dimerization interface [polypeptide binding]; other site
360102009166	Predicted periplasmic lipoprotein [General function prediction only]; Region: COG5618
360102009167	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
360102009168	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102009169	Walker A/P-loop; other site
360102009170	ATP binding site [chemical binding]; other site
360102009171	Q-loop/lid; other site
360102009172	ABC transporter signature motif; other site
360102009173	Walker B; other site
360102009174	D-loop; other site
360102009175	H-loop/switch region; other site
360102009176	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102009177	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102009178	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102009179	TM-ABC transporter signature motif; other site
360102009180	Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012
360102009181	TPP-binding site [chemical binding]; other site
360102009182	dimer interface [polypeptide binding]; other site
360102009183	Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]; Region: COG3958
360102009184	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
360102009185	PYR/PP interface [polypeptide binding]; other site
360102009186	dimer interface [polypeptide binding]; other site
360102009187	TPP binding site [chemical binding]; other site
360102009188	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
360102009189	Glycerol kinase [Energy production and conversion]; Region: GlpK; COG0554
360102009190	bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases; Region: FGGY_GK2_bacteria; cd07791
360102009191	N- and C-terminal domain interface [polypeptide binding]; other site
360102009192	active site
360102009193	MgATP binding site [chemical binding]; other site
360102009194	catalytic site [active]
360102009195	metal binding site [ion binding]; metal-binding site
360102009196	putative homotetramer interface [polypeptide binding]; other site
360102009197	putative homodimer interface [polypeptide binding]; other site
360102009198	glycerol binding site [chemical binding]; other site
360102009199	L-fucose isomerase and related proteins [Carbohydrate transport and metabolism]; Region: FucI; COG2407
360102009200	L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose...; Region: L-fuc_L-ara-isomerases; cd00578
360102009201	hexamer (dimer of trimers) interface [polypeptide binding]; other site
360102009202	substrate binding site [chemical binding]; other site
360102009203	trimer interface [polypeptide binding]; other site
360102009204	Mn binding site [ion binding]; other site
360102009205	Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]; Region: DeoR; COG2390
360102009206	MarR family; Region: MarR_2; cl17246
360102009207	Putative sugar-binding domain; Region: Sugar-bind; pfam04198
360102009208	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102009209	putative MFS family transporter protein; Provisional; Region: PRK03633
360102009210	putative substrate translocation pore; other site
360102009211	hypothetical protein; Validated; Region: PRK03661
360102009212	recombinase A; Provisional; Region: recA; PRK09354
360102009213	RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange; Region: recA; cd00983
360102009214	hexamer interface [polypeptide binding]; other site
360102009215	Walker A motif; other site
360102009216	ATP binding site [chemical binding]; other site
360102009217	Walker B motif; other site
360102009218	recombination regulator RecX; Reviewed; Region: recX; PRK00117
360102009219	Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: AlaRS_core; cd00673
360102009220	tRNA synthetases class II (A); Region: tRNA-synt_2c; pfam01411
360102009221	motif 1; other site
360102009222	active site
360102009223	motif 2; other site
360102009224	motif 3; other site
360102009225	alanine-tRNA ligase; Region: PLN02961
360102009226	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
360102009227	fructose-1-P/6-phosphogluconate phosphatase; Provisional; Region: PRK10725
360102009228	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102009229	motif II; other site
360102009230	Predicted membrane protein [Function unknown]; Region: COG1238
360102009231	glutamate--cysteine ligase; Provisional; Region: PRK02107
360102009232	S-ribosylhomocysteinase; Provisional; Region: PRK02260
360102009233	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102009234	hypothetical protein; Provisional; Region: PRK11573
360102009235	Domain of unknown function DUF21; Region: DUF21; pfam01595
360102009236	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
360102009237	Transporter associated domain; Region: CorC_HlyC; smart01091
360102009238	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4137
360102009239	signal recognition particle protein; Provisional; Region: PRK10867
360102009240	SRP54-type protein, helical bundle domain; Region: SRP54_N; smart00963
360102009241	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
360102009242	P loop; other site
360102009243	GTP binding site [chemical binding]; other site
360102009244	Signal peptide binding domain; Region: SRP_SPB; pfam02978
360102009245	30S ribosomal protein S16; Reviewed; Region: rpsP; PRK00040
360102009246	16S rRNA-processing protein RimM; Provisional; Region: rimM; PRK00122
360102009247	RimM N-terminal domain; Region: RimM; pfam01782
360102009248	PRC-barrel domain; Region: PRC; pfam05239
360102009249	tRNA (guanine-N(1)-)-methyltransferase; Reviewed; Region: trmD; PRK00026
360102009250	50S ribosomal protein L19; Provisional; Region: rplS; PRK05338
360102009251	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102009252	Putative salt-induced outer membrane protein [Cell envelope biogenesis, outer membrane]; Region: COG3137
360102009253	Anaerobic c4-dicarboxylate membrane transporter; Region: DcuA_DcuB; cl01040
360102009254	Anaerobic c4-dicarboxylate membrane transporter; Region: DcuA_DcuB; cl01040
360102009255	Anaerobic c4-dicarboxylate membrane transporter; Region: DcuA_DcuB; cl01040
360102009256	putative two-component response-regulatory protein YehT; Provisional; Region: PRK11697
360102009257	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102009258	active site
360102009259	phosphorylation site [posttranslational modification]
360102009260	intermolecular recognition site; other site
360102009261	dimerization interface [polypeptide binding]; other site
360102009262	LytTr DNA-binding domain; Region: LytTR; pfam04397
360102009263	phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional; Region: PRK12755
360102009264	DAHP synthetase I family; Region: DAHP_synth_1; pfam00793
360102009265	bifunctional chorismate mutase/prephenate dehydrogenase; Provisional; Region: tyrA; PRK11199
360102009266	Chorismate mutase type II; Region: CM_2; cl00693
360102009267	prephenate dehydrogenase; Validated; Region: PRK08507
360102009268	Prephenate dehydratase; Region: PDT; pfam00800
360102009269	C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme; Region: ACT_CM-PDT; cd04905
360102009270	putative L-Phe binding site [chemical binding]; other site
360102009271	transposase/IS protein; Provisional; Region: PRK09183
360102009272	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102009273	Walker A motif; other site
360102009274	ATP binding site [chemical binding]; other site
360102009275	Walker B motif; other site
360102009276	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102009277	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102009278	DNA-binding interface [nucleotide binding]; DNA binding site
360102009279	Integrase core domain; Region: rve; pfam00665
360102009280	Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]; Region: CysG; COG1648
360102009281	Putative NAD(P)-binding; Region: NAD_binding_7; pfam13241
360102009282	Sirohaem synthase dimerisation region; Region: CysG_dimeriser; pfam10414
360102009283	YcfA-like protein; Region: YcfA; pfam07927
360102009284	Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]; Region: COG1598
360102009285	Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which  binds to Adenosine nucleotide; Region: AANH_like; cl00292
360102009286	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]; Region: CysH; COG0175
360102009287	This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713
360102009288	sulfite reductase subunit beta; Provisional; Region: PRK13504
360102009289	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
360102009290	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
360102009291	sulfite reductase subunit alpha; Provisional; Region: cysJ; PRK10953
360102009292	Flavodoxin; Region: Flavodoxin_1; pfam00258
360102009293	Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ...; Region: SiR; cd06199
360102009294	FAD binding pocket [chemical binding]; other site
360102009295	FAD binding motif [chemical binding]; other site
360102009296	catalytic residues [active]
360102009297	NAD binding pocket [chemical binding]; other site
360102009298	phosphate binding motif [ion binding]; other site
360102009299	beta-alpha-beta structure motif; other site
360102009300	Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1),  6-pyrovoyl...; Region: TFold; cl00263
360102009301	active site
360102009302	Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]; Region: NrdG; COG0602
360102009303	putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; Region: rSAM_QueE_Ecoli; TIGR04322
360102009304	Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]; Region: SodC; COG2032
360102009305	Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the...; Region: Cu-Zn_Superoxide_Dismutase; cd00305
360102009306	E-class dimer interface [polypeptide binding]; other site
360102009307	P-class dimer interface [polypeptide binding]; other site
360102009308	active site
360102009309	Cu2+ binding site [ion binding]; other site
360102009310	Zn2+ binding site [ion binding]; other site
360102009311	enolase; Provisional; Region: eno; PRK00077
360102009312	Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313
360102009313	dimer interface [polypeptide binding]; other site
360102009314	metal binding site [ion binding]; metal-binding site
360102009315	substrate binding pocket [chemical binding]; other site
360102009316	CTP synthetase; Validated; Region: pyrG; PRK05380
360102009317	CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent...; Region: CTGs; cd03113
360102009318	Catalytic site [active]
360102009319	active site
360102009320	UTP binding site [chemical binding]; other site
360102009321	Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746
360102009322	active site
360102009323	putative oxyanion hole; other site
360102009324	catalytic triad [active]
360102009325	nucleoside triphosphate pyrophosphohydrolase; Reviewed; Region: mazG; PRK09562
360102009326	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) N-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs; Region: NTP-PPase_MazG_Nterm; cd11528
360102009327	homodimer interface [polypeptide binding]; other site
360102009328	metal binding site [ion binding]; metal-binding site
360102009329	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) C-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs' Region: NTP-PPase_MazG_Cterm; cd11529
360102009330	homodimer interface [polypeptide binding]; other site
360102009331	active site
360102009332	putative chemical substrate binding site [chemical binding]; other site
360102009333	metal binding site [ion binding]; metal-binding site
360102009334	(p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional; Region: relA; PRK10872
360102009335	HD domain; Region: HD_4; pfam13328
360102009336	Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399
360102009337	synthetase active site [active]
360102009338	NTP binding site [chemical binding]; other site
360102009339	metal binding site [ion binding]; metal-binding site
360102009340	TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after...; Region: TGS_RelA_SpoT; cd01668
360102009341	ACT  domain found C-terminal of the RelA/SpoT domains; Region: ACT_RelA-SpoT; cd04876
360102009342	23S rRNA m(5)U1939 methyltransferase; Reviewed; Region: rumA; PRK13168
360102009343	hybrid sensory histidine kinase BarA; Provisional; Region: PRK11107
360102009344	Uncharacterized signal transduction histidine kinase domain (DUF2222); Region: DUF2222; pfam09984
360102009345	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102009346	dimerization interface [polypeptide binding]; other site
360102009347	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102009348	dimer interface [polypeptide binding]; other site
360102009349	phosphorylation site [posttranslational modification]
360102009350	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102009351	ATP binding site [chemical binding]; other site
360102009352	Mg2+ binding site [ion binding]; other site
360102009353	G-X-G motif; other site
360102009354	Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]; Region: COG4999
360102009355	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102009356	active site
360102009357	phosphorylation site [posttranslational modification]
360102009358	intermolecular recognition site; other site
360102009359	dimerization interface [polypeptide binding]; other site
360102009360	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
360102009361	putative binding surface; other site
360102009362	active site
360102009363	serine endoprotease; Provisional; Region: PRK10942
360102009364	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
360102009365	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
360102009366	protein binding site [polypeptide binding]; other site
360102009367	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
360102009368	deoxyguanosinetriphosphate triphosphohydrolase; Provisional; Region: dgt; PRK04926
360102009369	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
360102009370	Zn2+ binding site [ion binding]; other site
360102009371	Mg2+ binding site [ion binding]; other site
360102009372	Phosphohydrolase-associated domain; Region: HD_assoc; pfam13286
360102009373	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated; Region: PRK05584
360102009374	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Region: MTA/SAH-Nsdase; TIGR01704
360102009375	vitamin B12-transporter protein BtuF; Provisional; Region: PRK03379
360102009376	Cobalamin binding protein BtuF.  These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species.  They belong to the TroA superfamily of helical backbone metal receptor...; Region: BtuF; cd01144
360102009377	cobalamin binding residues [chemical binding]; other site
360102009378	putative BtuC binding residues; other site
360102009379	dimer interface [polypeptide binding]; other site
360102009380	hypothetical protein; Provisional; Region: PRK10578
360102009381	UPF0126 domain; Region: UPF0126; pfam03458
360102009382	UPF0126 domain; Region: UPF0126; pfam03458
360102009383	iron-sulfur cluster insertion protein ErpA; Provisional; Region: PRK13623
360102009384	Chloride channel protein EriC [Inorganic ion transport and metabolism]; Region: EriC; COG0038
360102009385	ClC chloride channel EriC.  This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked...; Region: EriC; cd01031
360102009386	Cl- selectivity filter; other site
360102009387	Cl- binding residues [ion binding]; other site
360102009388	pore gating glutamate residue; other site
360102009389	dimer interface [polypeptide binding]; other site
360102009390	H+/Cl- coupling transport residue; other site
360102009391	glutamate-1-semialdehyde aminotransferase; Provisional; Region: PRK00062
360102009392	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
360102009393	inhibitor-cofactor binding pocket; inhibition site
360102009394	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102009395	catalytic residue [active]
360102009396	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
360102009397	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102009398	ABC-ATPase subunit  interface; other site
360102009399	dimer interface [polypeptide binding]; other site
360102009400	putative PBP binding regions; other site
360102009401	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102009402	ABC-ATPase subunit  interface; other site
360102009403	dimer interface [polypeptide binding]; other site
360102009404	putative PBP binding regions; other site
360102009405	Fe3+-siderophore binding domain FhuD.  These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins...; Region: FhuD; cd01146
360102009406	Periplasmic binding protein; Region: Peripla_BP_2; pfam01497
360102009407	siderophore binding site; other site
360102009408	iron-hydroxamate transporter ATP-binding subunit; Provisional; Region: PRK10575
360102009409	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
360102009410	Walker A/P-loop; other site
360102009411	ATP binding site [chemical binding]; other site
360102009412	Q-loop/lid; other site
360102009413	ABC transporter signature motif; other site
360102009414	Walker B; other site
360102009415	D-loop; other site
360102009416	H-loop/switch region; other site
360102009417	bifunctional glycosyl transferase/transpeptidase; Reviewed; Region: mrcB; PRK09506
360102009418	Transglycosylase; Region: Transgly; pfam00912
360102009419	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
360102009420	ATP-dependent RNA helicase HrpB; Provisional; Region: PRK11664
360102009421	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
360102009422	ATP binding site [chemical binding]; other site
360102009423	putative Mg++ binding site [ion binding]; other site
360102009424	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102009425	nucleotide binding region [chemical binding]; other site
360102009426	ATP-binding site [chemical binding]; other site
360102009427	Helicase associated domain (HA2); Region: HA2; pfam04408
360102009428	ATP-dependent helicase C-terminal; Region: HrpB_C; pfam08482
360102009429	2'-5' RNA ligase; Provisional; Region: PRK15124
360102009430	LigT like Phosphoesterase; Region: LigT_PEase; pfam02834
360102009431	putative DNA-binding transcriptional regulator; Reviewed; Region: PRK00347
360102009432	RNA polymerase-binding transcription factor; Provisional; Region: dksA; PRK10778
360102009433	glutamyl-Q tRNA(Asp) synthetase; Reviewed; Region: PRK05710
360102009434	Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]; Region: GlnS; COG0008
360102009435	active site
360102009436	nucleotide binding site [chemical binding]; other site
360102009437	HIGH motif; other site
360102009438	KMSKS motif; other site
360102009439	poly(A) polymerase I; Provisional; Region: pcnB; PRK11623
360102009440	Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398
360102009441	active site
360102009442	NTP binding site [chemical binding]; other site
360102009443	metal binding triad [ion binding]; metal-binding site
360102009444	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
360102009445	Polymerase A arginine-rich C-terminus; Region: PolyA_pol_arg_C; pfam12626
360102009446	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after...; Region: HPPK; cd00483
360102009447	catalytic center binding site [active]
360102009448	ATP binding site [chemical binding]; other site
360102009449	Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a...; Region: KPHMT-like; cd06557
360102009450	oligomerization interface [polypeptide binding]; other site
360102009451	active site
360102009452	metal binding site [ion binding]; metal-binding site
360102009453	pantoate--beta-alanine ligase; Region: panC; TIGR00018
360102009454	Pantoate-beta-alanine ligase; Region: PanC; cd00560
360102009455	active site
360102009456	ATP-binding site [chemical binding]; other site
360102009457	pantoate-binding site; other site
360102009458	HXXH motif; other site
360102009459	Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent  decarboxylase in beta-alanine production; Region: Asp_decarbox; cd06919
360102009460	tetramerization interface [polypeptide binding]; other site
360102009461	active site
360102009462	Bacterial SH3 domain; Region: SH3_3; cl17532
360102009463	Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Region: CDA1; COG0726
360102009464	Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins; Region: CE4_yadE_5s; cd10966
360102009465	putative active site [active]
360102009466	putative metal binding site [ion binding]; other site
360102009467	inner membrane transport permease; Provisional; Region: PRK15066
360102009468	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
360102009469	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
360102009470	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
360102009471	Walker A/P-loop; other site
360102009472	ATP binding site [chemical binding]; other site
360102009473	Q-loop/lid; other site
360102009474	ABC transporter signature motif; other site
360102009475	Walker B; other site
360102009476	D-loop; other site
360102009477	H-loop/switch region; other site
360102009478	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeA; cd00883
360102009479	active site clefts [active]
360102009480	zinc binding site [ion binding]; other site
360102009481	dimer interface [polypeptide binding]; other site
360102009482	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
360102009483	active site
360102009484	multicopper oxidase; Provisional; Region: PRK10965
360102009485	Multicopper oxidase; Region: Cu-oxidase_3; pfam07732
360102009486	Multicopper oxidase; Region: Cu-oxidase; pfam00394
360102009487	Multicopper oxidase; Region: Cu-oxidase_2; pfam07731
360102009488	Bacterial chaperone lipoprotein (PulS_OutS); Region: PulS_OutS; cl09898
360102009489	spermidine synthase; Provisional; Region: PRK00811
360102009490	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102009491	S-adenosylmethionine binding site [chemical binding]; other site
360102009492	S-adenosylmethionine decarboxylase; Provisional; Region: PRK05462
360102009493	aromatic amino acid exporter; Provisional; Region: PRK11689
360102009494	EamA-like transporter family; Region: EamA; cl17759
360102009495	hypothetical protein; Provisional; Region: PRK05248
360102009496	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated; Region: PRK09238
360102009497	Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in...; Region: AcnB_Swivel; cd01576
360102009498	substrate binding site [chemical binding]; other site
360102009499	Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle; Region: AcnB; cd01581
360102009500	substrate binding site [chemical binding]; other site
360102009501	ligand binding site [chemical binding]; other site
360102009502	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102009503	dihydrolipoamide dehydrogenase; Reviewed; Region: PRK06467
360102009504	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
360102009505	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
360102009506	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
360102009507	dihydrolipoamide acetyltransferase; Reviewed; Region: PRK11855
360102009508	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
360102009509	E3 interaction surface; other site
360102009510	lipoyl attachment site [posttranslational modification]; other site
360102009511	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
360102009512	E3 interaction surface; other site
360102009513	lipoyl attachment site [posttranslational modification]; other site
360102009514	e3 binding domain; Region: E3_binding; pfam02817
360102009515	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
360102009516	pyruvate dehydrogenase subunit E1; Reviewed; Region: aceE; PRK09405
360102009517	Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative...; Region: TPP_E1_EcPDC_like; cd02017
360102009518	dimer interface [polypeptide binding]; other site
360102009519	TPP-binding site [chemical binding]; other site
360102009520	transcriptional regulator PdhR; Reviewed; Region: pdhR; PRK09464
360102009521	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102009522	DNA-binding site [nucleotide binding]; DNA binding site
360102009523	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
360102009524	aromatic amino acid transporter; Provisional; Region: PRK10238
360102009525	regulatory protein AmpE; Provisional; Region: PRK10987
360102009526	N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: ampD; COG3023
360102009527	Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20...; Region: PGRP; cd06583
360102009528	amidase catalytic site [active]
360102009529	Zn binding residues [ion binding]; other site
360102009530	substrate binding site [chemical binding]; other site
360102009531	quinolinate phosphoribosyltransferase; Validated; Region: PRK09016
360102009532	Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with...; Region: QPRTase; cd01572
360102009533	dimerization interface [polypeptide binding]; other site
360102009534	active site
360102009535	Type IV pilin N-term methylation site GFxxxE; Region: N_methyl_2; pfam13544
360102009536	putative major pilin subunit; Provisional; Region: PRK10574
360102009537	hypothetical protein; Provisional; Region: PRK10436
360102009538	PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129
360102009539	Walker A motif; other site
360102009540	ATP binding site [chemical binding]; other site
360102009541	Walker B motif; other site
360102009542	type IV pilin biogenesis protein; Provisional; Region: PRK10573
360102009543	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
360102009544	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
360102009545	guanosine 5'-monophosphate oxidoreductase; Provisional; Region: PRK05096
360102009546	IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of...; Region: IMPDH; cd00381
360102009547	active site
360102009548	Dephospho-CoA kinase [Coenzyme metabolism]; Region: CoaE; COG0237
360102009549	Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022
360102009550	CoA-binding site [chemical binding]; other site
360102009551	ATP-binding [chemical binding]; other site
360102009552	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4582
360102009553	DNA gyrase inhibitor; Reviewed; Region: PRK00418
360102009554	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102009555	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102009556	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102009557	DNA-binding interface [nucleotide binding]; DNA binding site
360102009558	Integrase core domain; Region: rve; pfam00665
360102009559	transposase/IS protein; Provisional; Region: PRK09183
360102009560	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102009561	Walker A motif; other site
360102009562	ATP binding site [chemical binding]; other site
360102009563	Walker B motif; other site
360102009564	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Region: HATPase_c_3; pfam13589
360102009565	Mg2+ binding site [ion binding]; other site
360102009566	G-X-G motif; other site
360102009567	Uncharacterized conserved protein [Function unknown]; Region: COG1479
360102009568	Protein of unknown function DUF262; Region: DUF262; pfam03235
360102009569	Protein of unknown function DUF262; Region: DUF262; pfam03235
360102009570	Protein of unknown function (DUF1524); Region: DUF1524; pfam07510
360102009571	integrase; Provisional; Region: PRK09692
360102009572	Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801
360102009573	active site
360102009574	Int/Topo IB signature motif; other site
360102009575	lipopolysaccharide ABC transporter permease; Provisional; Region: PRK15071
360102009576	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
360102009577	lipopolysaccharide ABC transporter permease LptF; Provisional; Region: PRK15120
360102009578	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
360102009579	multifunctional aminopeptidase A; Provisional; Region: PRK00913
360102009580	Cytosol aminopeptidase family, N-terminal and catalytic domains.  Family M17 contains zinc- and manganese-dependent exopeptidases ( EC  3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and...; Region: Peptidase_M17; cd00433
360102009581	interface (dimer of trimers) [polypeptide binding]; other site
360102009582	Substrate-binding/catalytic site; other site
360102009583	Zn-binding sites [ion binding]; other site
360102009584	DNA polymerase III subunit chi; Validated; Region: PRK05728
360102009585	valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729
360102009586	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
360102009587	HIGH motif; other site
360102009588	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
360102009589	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
360102009590	active site
360102009591	KMSKS motif; other site
360102009592	Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962
360102009593	tRNA binding surface [nucleotide binding]; other site
360102009594	anticodon binding site; other site
360102009595	Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458
360102009596	RNase E inhibitor protein; Provisional; Region: PRK11191
360102009597	Protein of unknown function (DUF1260); Region: DUF1260; pfam06877
360102009598	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
360102009599	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
360102009600	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185
360102009601	Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]; Region: EbgC; COG2731
360102009602	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_7; cd08512
360102009603	Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496
360102009604	The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like; cl01709
360102009605	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
360102009606	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102009607	dimer interface [polypeptide binding]; other site
360102009608	conserved gate region; other site
360102009609	putative PBP binding loops; other site
360102009610	ABC-ATPase subunit interface; other site
360102009611	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
360102009612	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
360102009613	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102009614	dimer interface [polypeptide binding]; other site
360102009615	conserved gate region; other site
360102009616	ABC-ATPase subunit interface; other site
360102009617	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102009618	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
360102009619	Walker A/P-loop; other site
360102009620	ATP binding site [chemical binding]; other site
360102009621	Q-loop/lid; other site
360102009622	ABC transporter signature motif; other site
360102009623	Walker B; other site
360102009624	D-loop; other site
360102009625	H-loop/switch region; other site
360102009626	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
360102009627	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102009628	Walker A/P-loop; other site
360102009629	ATP binding site [chemical binding]; other site
360102009630	Q-loop/lid; other site
360102009631	ABC transporter signature motif; other site
360102009632	Walker B; other site
360102009633	D-loop; other site
360102009634	H-loop/switch region; other site
360102009635	anaerobic ribonucleoside triphosphate reductase; Provisional; Region: PRK09263
360102009636	ATP cone domain; Region: ATP-cone; pfam03477
360102009637	Class III ribonucleotide reductase; Region: RNR_III; cd01675
360102009638	effector binding site; other site
360102009639	active site
360102009640	Zn binding site [ion binding]; other site
360102009641	glycine loop; other site
360102009642	anaerobic ribonucleotide reductase-activating protein; Provisional; Region: nrdG; PRK11121
360102009643	4Fe-4S single cluster domain; Region: Fer4_12; pfam13353
360102009644	phosphonate metabolism transcriptional regulator PhnF; Provisional; Region: PRK10079
360102009645	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102009646	DNA-binding site [nucleotide binding]; DNA binding site
360102009647	UTRA domain; Region: UTRA; pfam07702
360102009648	Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]; Region: PhnG; COG3624
360102009649	Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]; Region: PhnH; COG3625
360102009650	Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]; Region: PhnI; COG3626
360102009651	Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]; Region: PhnJ; COG3627
360102009652	phosphonate C-P lyase system protein PhnK; Provisional; Region: phnK; PRK11701
360102009653	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102009654	Walker A/P-loop; other site
360102009655	ATP binding site [chemical binding]; other site
360102009656	Q-loop/lid; other site
360102009657	ABC transporter signature motif; other site
360102009658	Walker B; other site
360102009659	D-loop; other site
360102009660	H-loop/switch region; other site
360102009661	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
360102009662	ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: PhnL; COG4778
360102009663	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102009664	Walker A/P-loop; other site
360102009665	ATP binding site [chemical binding]; other site
360102009666	Q-loop/lid; other site
360102009667	ABC transporter signature motif; other site
360102009668	Walker B; other site
360102009669	D-loop; other site
360102009670	H-loop/switch region; other site
360102009671	Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]; Region: COG3454
360102009672	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
360102009673	PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage...; Region: PhnM; cd01306
360102009674	active site
360102009675	ribose 1,5-bisphosphokinase; Provisional; Region: PRK10078
360102009676	Guanylate kinase; Region: Guanylate_kin; pfam00625
360102009677	active site
360102009678	putative hydrolase; Provisional; Region: PRK02113
360102009679	carbon-phosphorus lyase complex accessory protein; Provisional; Region: phnP; PRK11244
360102009680	CC3(TIP30)-like, atypical (a) SDRs; Region: CC3_like_SDR_a; cd05250
360102009681	Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702
360102009682	NAD binding site [chemical binding]; other site
360102009683	active site
360102009684	hypothetical protein; Provisional; Region: PRK03467
360102009685	Alginate lyase; Region: Alginate_lyase; pfam05426
360102009686	glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650
360102009687	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
360102009688	Walker A/P-loop; other site
360102009689	ATP binding site [chemical binding]; other site
360102009690	Q-loop/lid; other site
360102009691	ABC transporter signature motif; other site
360102009692	Walker B; other site
360102009693	D-loop; other site
360102009694	H-loop/switch region; other site
360102009695	TOBE domain; Region: TOBE_2; pfam08402
360102009696	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
360102009697	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102009698	dimer interface [polypeptide binding]; other site
360102009699	conserved gate region; other site
360102009700	putative PBP binding loops; other site
360102009701	ABC-ATPase subunit interface; other site
360102009702	ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]; Region: LplB; COG4209
360102009703	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102009704	dimer interface [polypeptide binding]; other site
360102009705	putative PBP binding loops; other site
360102009706	ABC-ATPase subunit interface; other site
360102009707	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
360102009708	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
360102009709	Alginate lyase; Region: Alginate_lyase; pfam05426
360102009710	Heparinase II/III-like protein; Region: Hepar_II_III; pfam07940
360102009711	The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1; Region: GIY-YIG_UPF0213; cd10456
360102009712	GIY-YIG motif/motif A; other site
360102009713	putative active site [active]
360102009714	putative metal binding site [ion binding]; other site
360102009715	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
360102009716	Coenzyme A binding pocket [chemical binding]; other site
360102009717	Putative lipid carrier protein [Lipid metabolism]; Region: COG3154
360102009718	Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]; Region: COG0826
360102009719	Peptidase family U32; Region: Peptidase_U32; pfam01136
360102009720	putative protease; Provisional; Region: PRK15447
360102009721	Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]; Region: COG0826
360102009722	Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: TolC; COG1538
360102009723	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915
360102009724	Protein export membrane protein; Region: SecD_SecF; cl14618
360102009725	multidrug efflux system transporter AcrA; Provisional; Region: PRK15030
360102009726	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102009727	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102009728	hypothetical protein; Provisional; Region: PRK10508
360102009729	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cd00347
360102009730	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892
360102009731	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cd00347
360102009732	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
360102009733	non-specific DNA binding site [nucleotide binding]; other site
360102009734	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
360102009735	salt bridge; other site
360102009736	sequence-specific DNA binding site [nucleotide binding]; other site
360102009737	Phage-related protein [Function unknown]; Region: COG4679
360102009738	ATP-dependent RNA helicase DeaD; Provisional; Region: PRK11634
360102009739	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
360102009740	ATP binding site [chemical binding]; other site
360102009741	Mg++ binding site [ion binding]; other site
360102009742	motif III; other site
360102009743	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102009744	nucleotide binding region [chemical binding]; other site
360102009745	ATP-binding site [chemical binding]; other site
360102009746	RNA recognition motif in Escherichia coli cold-shock DEAD box protein A (CsdA) and similar proteins; Region: RRM_EcCsdA_like; cd12499
360102009747	putative RNA binding site [nucleotide binding]; other site
360102009748	Cold shock protein DEAD box A; Region: DEADboxA; pfam12343
360102009749	lipoprotein NlpI; Provisional; Region: PRK11189
360102009750	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
360102009751	binding surface
360102009752	TPR motif; other site
360102009753	polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824
360102009754	Polyribonucleotide nucleotidyltransferase, repeat 1; Region: RNase_PH_PNPase_1; cd11363
360102009755	RNase E interface [polypeptide binding]; other site
360102009756	trimer interface [polypeptide binding]; other site
360102009757	Polyribonucleotide nucleotidyltransferase, RNA binding domain; Region: PNPase; pfam03726
360102009758	Polyribonucleotide nucleotidyltransferase, repeat 2; Region: RNase_PH_PNPase_2; cd11364
360102009759	RNase E interface [polypeptide binding]; other site
360102009760	trimer interface [polypeptide binding]; other site
360102009761	active site
360102009762	Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to...; Region: PNPase_KH; cd02393
360102009763	putative nucleic acid binding region [nucleotide binding]; other site
360102009764	G-X-X-G motif; other site
360102009765	S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase  is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA; Region: S1_PNPase; cd04472
360102009766	RNA binding site [nucleotide binding]; other site
360102009767	domain interface; other site
360102009768	putative transposase OrfB; Reviewed; Region: PHA02517
360102009769	HTH-like domain; Region: HTH_21; pfam13276
360102009770	Integrase core domain; Region: rve; pfam00665
360102009771	Integrase core domain; Region: rve_2; pfam13333
360102009772	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
360102009773	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102009774	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102009775	Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]; Region: COG2423
360102009776	ornithine cyclodeaminase; Validated; Region: PRK06823
360102009777	hypothetical protein; Provisional; Region: PRK06815
360102009778	Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562
360102009779	tetramer interface [polypeptide binding]; other site
360102009780	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102009781	catalytic residue [active]
360102009782	Protein of unknown function (DUF3748); Region: DUF3748; pfam12566
360102009783	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
360102009784	hypothetical protein; Provisional; Region: PRK11616
360102009785	Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: IbpA; COG0071
360102009786	Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins.  IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation...; Region: ACD_IbpA-B_like; cd06470
360102009787	putative dimer interface [polypeptide binding]; other site
360102009788	Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: IbpA; COG0071
360102009789	Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins.  IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation...; Region: ACD_IbpA-B_like; cd06470
360102009790	putative dimer interface [polypeptide binding]; other site
360102009791	putative transporter; Validated; Region: PRK03818
360102009792	Predicted Permease Membrane Region; Region: Asp-Al_Ex; pfam06826
360102009793	TrkA-C domain; Region: TrkA_C; pfam02080
360102009794	TrkA-C domain; Region: TrkA_C; pfam02080
360102009795	AspT/YidE/YbjL antiporter duplication domain; Region: YidE_YbjL_dupl; TIGR01625
360102009796	valine--pyruvate transaminase; Provisional; Region: avtA; PRK09440
360102009797	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
360102009798	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102009799	homodimer interface [polypeptide binding]; other site
360102009800	catalytic residue [active]
360102009801	alpha-amylase; Reviewed; Region: malS; PRK09505
360102009802	Alpha amylase catalytic domain family; Region: AmyAc_family; cl07893
360102009803	active site
360102009804	catalytic site [active]
360102009805	bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional; Region: PRK15409
360102009806	D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); Region: GDH; cd05301
360102009807	dimerization interface [polypeptide binding]; other site
360102009808	ligand binding site [chemical binding]; other site
360102009809	NADP binding site [chemical binding]; other site
360102009810	catalytic site [active]
360102009811	Predicted transcriptional regulator [Transcription]; Region: COG2345
360102009812	putative outer membrane lipoprotein; Provisional; Region: PRK10510
360102009813	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
360102009814	ligand binding site [chemical binding]; other site
360102009815	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
360102009816	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
360102009817	Coenzyme A binding pocket [chemical binding]; other site
360102009818	Methyladenine glycosylase; Region: Adenine_glyco; pfam03352
360102009819	Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the...; Region: GlyRS_alpha_core; cd00733
360102009820	dimer interface [polypeptide binding]; other site
360102009821	motif 1; other site
360102009822	active site
360102009823	motif 2; other site
360102009824	motif 3; other site
360102009825	glycyl-tRNA synthetase subunit beta; Validated; Region: glyS; PRK01233
360102009826	DALR anticodon binding domain; Region: DALR_1; pfam05746
360102009827	Protein of unknown function (DUF3053); Region: DUF3053; pfam11254
360102009828	PTS system mannitol-specific transporter subunit IICBA; Provisional; Region: PRK15083
360102009829	PTS system, mannitol-specific IIC component; Region: mtlA; TIGR00851
360102009830	PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane...; Region: PTS_IIB_mannitol; cd05567
360102009831	active site
360102009832	P-loop; other site
360102009833	phosphorylation site [posttranslational modification]
360102009834	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
360102009835	active site
360102009836	phosphorylation site [posttranslational modification]
360102009837	mannitol-1-phosphate 5-dehydrogenase; Provisional; Region: PRK02318
360102009838	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
360102009839	Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125
360102009840	Transcriptional regulator [Transcription]; Region: MtlR; COG3722
360102009841	mannitol repressor protein; Provisional; Region: mtlR; PRK11001
360102009842	hypothetical protein; Provisional; Region: PRK11020
360102009843	Electron transfer DM13; Region: DM13; pfam10517
360102009844	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
360102009845	dimer interface [polypeptide binding]; other site
360102009846	putative CheW interface [polypeptide binding]; other site
360102009847	transposase/IS protein; Provisional; Region: PRK09183
360102009848	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102009849	Walker A motif; other site
360102009850	ATP binding site [chemical binding]; other site
360102009851	Walker B motif; other site
360102009852	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102009853	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102009854	DNA-binding interface [nucleotide binding]; DNA binding site
360102009855	Integrase core domain; Region: rve; pfam00665
360102009856	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102009857	dimerization interface [polypeptide binding]; other site
360102009858	superoxide dismutase; Provisional; Region: PRK10925
360102009859	Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081
360102009860	Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777
360102009861	formate dehydrogenase accessory protein; Reviewed; Region: PRK00724
360102009862	Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a  large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928
360102009863	Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a  large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928
360102009864	molybdopterin cofactor binding site; other site
360102009865	Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_Formate-Dh-Na-like; cd02752
360102009866	Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_CT_Formate-Dh-Na-like; cd02792
360102009867	molybdopterin cofactor binding site; other site
360102009868	formate dehydrogenase, beta subunit, Fe-S containing; Region: FDH-beta; TIGR01582
360102009869	Formate dehydrogenase N, transmembrane; Region: Form-deh_trans; pfam09163
360102009870	formate dehydrogenase-O subunit gamma; Provisional; Region: PRK10639
360102009871	formate dehydrogenase, gamma subunit; Region: formate-DH-gamm; TIGR01583
360102009872	formate dehydrogenase accessory protein FdhE; Provisional; Region: PRK03564
360102009873	formate dehydrogenase accessory protein FdhE; Region: FdhE; TIGR01562
360102009874	selenocysteine synthase; Provisional; Region: PRK04311
360102009875	Selenocysteine synthase N terminal; Region: Se-cys_synth_N; pfam12390
360102009876	Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]; Region: SelA; COG1921
360102009877	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102009878	catalytic residue [active]
360102009879	selenocysteinyl-tRNA-specific translation factor; Provisional; Region: PRK10512
360102009880	SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome; Region: SelB; cd04171
360102009881	G1 box; other site
360102009882	putative GEF interaction site [polypeptide binding]; other site
360102009883	GTP/Mg2+ binding site [chemical binding]; other site
360102009884	Switch I region; other site
360102009885	G2 box; other site
360102009886	G3 box; other site
360102009887	Switch II region; other site
360102009888	G4 box; other site
360102009889	G5 box; other site
360102009890	selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several...; Region: selB_II; cd03696
360102009891	This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements:...; Region: selB_III; cd04094
360102009892	Elongation factor SelB, winged helix; Region: SelB-wing_2; pfam09106
360102009893	Elongation factor SelB, winged helix; Region: SelB-wing_3; pfam09107
360102009894	Tn3 transposase DDE domain; Region: DDE_Tnp_Tn3; cl14901
360102009895	Protein of unknown function (DUF4225); Region: DUF4225; pfam13988
360102009896	multidrug efflux system translocase MdfA; Provisional; Region: PRK15402
360102009897	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102009898	putative substrate translocation pore; other site
360102009899	putative transposase OrfB; Reviewed; Region: PHA02517
360102009900	HTH-like domain; Region: HTH_21; pfam13276
360102009901	Integrase core domain; Region: rve; pfam00665
360102009902	Integrase core domain; Region: rve_2; pfam13333
360102009903	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
360102009904	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102009905	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102009906	Glycine zipper 2TM domain; Region: Rick_17kDa_Anti; cl10470
360102009907	hypothetical protein; Validated; Region: PRK06778
360102009908	Membrane MotB of proton-channel complex MotA/MotB; Region: MotB_plug; pfam13677
360102009909	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
360102009910	ligand binding site [chemical binding]; other site
360102009911	flagellar motor protein MotA; Provisional; Region: PRK12482
360102009912	Flagellar motor component [Cell motility and secretion]; Region: MotA; COG1291
360102009913	flagellar biosynthesis sigma factor; Provisional; Region: PRK12427
360102009914	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
360102009915	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
360102009916	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
360102009917	DNA binding residues [nucleotide binding]
360102009918	Flagellar basal body-associated protein FliL; Region: FliL; pfam03748
360102009919	Flagellar hook-length control protein [Cell motility and secretion]; Region: FliK; COG3144
360102009920	Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cl00160
360102009921	Flagellar hook-length control protein FliK; Region: Flg_hook; pfam02120
360102009922	Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]; Region: FliS; COG1516
360102009923	Flagellar capping protein [Cell motility and secretion]; Region: FliD; COG1345
360102009924	Flagellar hook-associated protein 2 C-terminus; Region: FliD_N; pfam02465
360102009925	Flagellar hook-associated protein 2 C-terminus; Region: FliD_C; pfam07195
360102009926	Flagellin and related hook-associated proteins [Cell motility and secretion]; Region: FlgL; COG1344
360102009927	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
360102009928	Flagellin and related hook-associated proteins [Cell motility and secretion]; Region: FlgL; COG1344
360102009929	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
360102009930	Flagellin and related hook-associated proteins [Cell motility and secretion]; Region: FlgL; COG1344
360102009931	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
360102009932	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
360102009933	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102009934	DNA binding site [nucleotide binding]
360102009935	flagellar hook-associated protein FlgL; Reviewed; Region: flgL; PRK07192
360102009936	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
360102009937	flagellar hook-associated protein FlgK; Validated; Region: flgK; PRK07191
360102009938	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
360102009939	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
360102009940	peptidoglycan hydrolase; Reviewed; Region: flgJ; PRK12708
360102009941	flagellar basal body P-ring protein; Provisional; Region: flgI; PRK05303
360102009942	flagellar basal body P-ring protein; Reviewed; Region: flgI; cl14622
360102009943	flagellar basal body L-ring protein; Reviewed; Region: flgH; PRK12407
360102009944	Flagellar L-ring protein; Region: FlgH; pfam02107
360102009945	flagellar basal body rod protein FlgG; Provisional; Region: flgG; PRK12693
360102009946	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
360102009947	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
360102009948	flagellar basal body rod protein FlgF; Reviewed; Region: flgF; PRK12640
360102009949	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
360102009950	flagellar basal-body rod protein FlgF; Region: flgF; TIGR02490
360102009951	flagellar hook protein FlgE; Validated; Region: flgE; PRK06803
360102009952	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
360102009953	Flagellar basal body protein FlaE; Region: FlaE; pfam07559
360102009954	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; cl15855
360102009955	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
360102009956	flagellar basal body rod modification protein; Reviewed; Region: flgD; PRK09619
360102009957	Flagellar hook capping protein - N-terminal region; Region: FlgD; pfam03963
360102009958	FlgD Tudor-like domain; Region: FLgD_tudor; pfam13861
360102009959	flagellar basal body rod protein FlgC; Reviewed; Region: flgC; PRK06802
360102009960	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
360102009961	Flagellar basal body protein [Cell motility and secretion]; Region: FlgB; COG1815
360102009962	flagellar basal body rod protein FlgB; Reviewed; Region: flgB; PRK07182
360102009963	Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]; Region: FlgA; COG1261
360102009964	SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; Region: SAF_CpaB_FlgA_like; cd11614
360102009965	Domains similar to fish antifreeze type III protein; Region: SAF; cl00555
360102009966	flagellar biosynthesis anti-sigma factor FlgM; Region: FlgM_jcvi; TIGR03824
360102009967	FlgN protein; Region: FlgN; pfam05130
360102009968	flagellar export protein FliJ; Region: flagell_FliJ; TIGR02473
360102009969	flagellum-specific ATP synthase; Validated; Region: fliI; PRK07196
360102009970	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
360102009971	Walker A motif; other site
360102009972	ATP binding site [chemical binding]; other site
360102009973	Walker B motif; other site
360102009974	flagellar assembly protein H; Provisional; Region: fliH; PRK13386
360102009975	Essential protein Yae1, N terminal; Region: Yae1_N; pfam09811
360102009976	Flagellar assembly protein FliH; Region: FliH; pfam02108
360102009977	MgtE intracellular N domain; Region: MgtE_N; smart00924
360102009978	FliG C-terminal domain; Region: FliG_C; pfam01706
360102009979	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102009980	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102009981	DNA-binding interface [nucleotide binding]; DNA binding site
360102009982	Integrase core domain; Region: rve; pfam00665
360102009983	transposase/IS protein; Provisional; Region: PRK09183
360102009984	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102009985	Walker A motif; other site
360102009986	ATP binding site [chemical binding]; other site
360102009987	Walker B motif; other site
360102009988	flagellar motor switch protein G; Reviewed; Region: fliG; PRK07194
360102009989	flagellar MS-ring protein; Reviewed; Region: fliF; PRK07193
360102009990	Secretory protein of YscJ/FliF family; Region: YscJ_FliF; cl01907
360102009991	Flagellar M-ring protein C-terminal; Region: YscJ_FliF_C; pfam08345
360102009992	Flagellar hook-basal body complex protein FliE; Region: FliE; pfam02049
360102009993	psp operon transcriptional activator PspF; Region: phageshock_pspF; TIGR02974
360102009994	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102009995	Walker A motif; other site
360102009996	ATP binding site [chemical binding]; other site
360102009997	Walker B motif; other site
360102009998	arginine finger; other site
360102009999	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
360102010000	Surface presentation of antigens (SPOA); Region: SpoA; pfam01052
360102010001	Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliN; COG1886
360102010002	flagellar biosynthesis protein FliP; Reviewed; Region: fliP; PRK05699
360102010003	Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliQ; COG1987
360102010004	Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliR; COG1684
360102010005	Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FlhB; COG1377
360102010006	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257
360102010007	flagellar biosynthesis protein FlhA; Validated; Region: flhA; PRK06012
360102010008	FHIPEP family; Region: FHIPEP; pfam00771
360102010009	Protein of unknown function (DUF2931); Region: DUF2931; pfam11153
360102010010	Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]; Region: LprI; COG4461
360102010011	ABC-type Fe2+-enterobactin transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: FepB; COG4592
360102010012	Fe3+-siderophore binding domain FhuD.  These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins...; Region: FhuD; cd01146
360102010013	siderophore binding site; other site
360102010014	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
360102010015	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
360102010016	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102010017	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
360102010018	putative fimbrial outer membrane usher protein StfC; Provisional; Region: PRK15284
360102010019	PapC N-terminal domain; Region: PapC_N; pfam13954
360102010020	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102010021	PapC C-terminal domain; Region: PapC_C; pfam13953
360102010022	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102010023	Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: CpaA; COG4960
360102010024	Pilus formation protein N terminal region; Region: T2SS-T3SS_pil_N; pfam13629
360102010025	Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]; Region: CpaC; COG4964
360102010026	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
360102010027	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
360102010028	Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]; Region: CpaE; COG4963
360102010029	This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains...; Region: CpaE_like; cd03111
360102010030	Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]; Region: CpaF; COG4962
360102010031	Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to...; Region: VirB11-like_ATPase; cd01130
360102010032	ATP binding site [chemical binding]; other site
360102010033	Walker A motif; other site
360102010034	hexamer interface [polypeptide binding]; other site
360102010035	Walker B motif; other site
360102010036	Flp pilus assembly protein TadB [Intracellular trafficking and secretion]; Region: TadB; COG4965
360102010037	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
360102010038	Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: TadC; COG2064
360102010039	Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]; Region: TadD; COG5010
360102010040	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
360102010041	binding surface
360102010042	TPR motif; other site
360102010043	Flp pilus assembly protein TadG [Intracellular trafficking and secretion]; Region: TadG; COG4961
360102010044	Putative Flp pilus-assembly TadE/G-like; Region: Tad; pfam13400
360102010045	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057
360102010046	metal ion-dependent adhesion site (MIDAS); other site
360102010047	biopolymer transport protein ExbD; Provisional; Region: PRK11267
360102010048	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
360102010049	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
360102010050	cystathionine beta-lyase; Provisional; Region: PRK08114
360102010051	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
360102010052	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102010053	catalytic residue [active]
360102010054	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
360102010055	SNARE associated Golgi protein; Region: SNARE_assoc; pfam09335
360102010056	AraC-type transcriptional regulator N-terminus; Region: AraC_N; pfam06719
360102010057	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102010058	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
360102010059	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102010060	Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]; Region: COG1979
360102010061	Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process; Region: BDH; cd08187
360102010062	dimer interface [polypeptide binding]; other site
360102010063	active site
360102010064	metal binding site [ion binding]; metal-binding site
360102010065	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
360102010066	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
360102010067	active site
360102010068	catalytic tetrad [active]
360102010069	Domain of unknown function (DUF3362); Region: DUF3362; pfam11842
360102010070	Radical SAM N-terminal; Region: Radical_SAM_N; pfam08497
360102010071	FtsI repressor; Provisional; Region: PRK10883
360102010072	Multicopper oxidase; Region: Cu-oxidase_3; pfam07732
360102010073	Multicopper oxidase; Region: Cu-oxidase_2; pfam07731
360102010074	1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional; Region: PRK15018
360102010075	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
360102010076	putative acyl-acceptor binding pocket; other site
360102010077	DNA topoisomerase IV subunit A; Validated; Region: PRK05561
360102010078	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cd00187
360102010079	CAP-like domain; other site
360102010080	active site
360102010081	primary dimer interface [polypeptide binding]; other site
360102010082	Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]; Region: MdaB; COG2249
360102010083	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102010084	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102010085	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
360102010086	dimerization interface [polypeptide binding]; other site
360102010087	DNA topoisomerase IV subunit B; Reviewed; Region: PRK05559
360102010088	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102010089	ATP binding site [chemical binding]; other site
360102010090	Mg2+ binding site [ion binding]; other site
360102010091	G-X-G motif; other site
360102010092	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
360102010093	anchoring element; other site
360102010094	dimer interface [polypeptide binding]; other site
360102010095	ATP binding site [chemical binding]; other site
360102010096	Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from...; Region: TOPRIM; cl00718
360102010097	active site
360102010098	metal binding site [ion binding]; metal-binding site
360102010099	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
360102010100	esterase YqiA; Provisional; Region: PRK11071
360102010101	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
360102010102	Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain; Region: MPP_GpdQ; cd07402
360102010103	Predicted phosphohydrolases [General function prediction only]; Region: Icc; COG1409
360102010104	hexamer interface [polypeptide binding]; other site
360102010105	cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional; Region: PRK11148
360102010106	Predicted phosphohydrolases [General function prediction only]; Region: Icc; COG1409
360102010107	putative dehydrogenase; Provisional; Region: PRK11039
360102010108	ADP-ribose pyrophosphatase NudF; Provisional; Region: nudF; PRK10729
360102010109	ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+; Region: ADPRase_NUDT5; cd03424
360102010110	dimer interface [polypeptide binding]; other site
360102010111	ADP-ribose binding site [chemical binding]; other site
360102010112	active site
360102010113	nudix motif; other site
360102010114	metal binding site [ion binding]; metal-binding site
360102010115	outer membrane channel protein; Reviewed; Region: tolC; PRK09465
360102010116	hypothetical protein; Provisional; Region: PRK11653
360102010117	Glutathionylspermidine synthase [Amino acid transport and metabolism]; Region: Gsp; COG0754
360102010118	The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine; Region: 45_DOPA_Dioxygenase; cd07363
360102010119	Catalytic LigB subunit of aromatic ring-opening dioxygenase; Region: LigB; pfam02900
360102010120	putative active site [active]
360102010121	metal binding site [ion binding]; metal-binding site
360102010122	3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional; Region: ribB; PRK03353
360102010123	3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]; Region: RibB; COG0108
360102010124	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2960
360102010125	putative transporter; Provisional; Region: PRK11021
360102010126	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional; Region: PRK11316
360102010127	RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer...; Region: RfaE_like; cd01172
360102010128	putative ribose interaction site [chemical binding]; other site
360102010129	putative ADP binding site [chemical binding]; other site
360102010130	rfaE bifunctional protein, domain II; Region: rfaE_dom_II; TIGR02199
360102010131	active site
360102010132	nucleotide binding site [chemical binding]; other site
360102010133	HIGH motif; other site
360102010134	KMSKS motif; other site
360102010135	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed; Region: PRK11072
360102010136	Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401
360102010137	metal binding triad; other site
360102010138	GlnD PII-uridylyltransferase; Region: GlnD_UR_UTase; pfam08335
360102010139	Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401
360102010140	metal binding triad; other site
360102010141	GlnD PII-uridylyltransferase; Region: GlnD_UR_UTase; pfam08335
360102010142	Uncharacterized conserved protein [Function unknown]; Region: COG3025
360102010143	Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain; Region: CYTH-like_Pase_CHAD; cd07756
360102010144	putative active site [active]
360102010145	putative metal binding residues [ion binding]; other site
360102010146	signature motif; other site
360102010147	putative triphosphate binding site [ion binding]; other site
360102010148	SH3 domain-containing protein; Provisional; Region: PRK10884
360102010149	Bacterial SH3 domain homologues; Region: SH3b; smart00287
360102010150	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed; Region: cca; PRK10885
360102010151	Poly A polymerase head domain; Region: PolyA_pol; pfam01743
360102010152	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
360102010153	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
360102010154	Zn2+ binding site [ion binding]; other site
360102010155	Mg2+ binding site [ion binding]; other site
360102010156	undecaprenyl pyrophosphate phosphatase; Reviewed; Region: PRK00281
360102010157	Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and...; Region: DHNA_DHNTPE; cd00534
360102010158	homooctamer interface [polypeptide binding]; other site
360102010159	active site
360102010160	putative glycerol-3-phosphate acyltransferase PlsY; Provisional; Region: PRK00220
360102010161	UGMP family protein; Validated; Region: PRK09604
360102010162	tRNA threonylcarbamoyl adenosine modification protein YeaZ; Region: T6A_YeaZ; TIGR03725
360102010163	30S ribosomal protein S21; Reviewed; Region: rpsU; PRK00270
360102010164	DNA primase; Validated; Region: dnaG; PRK05667
360102010165	CHC2 zinc finger; Region: zf-CHC2; pfam01807
360102010166	DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275
360102010167	TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_DnaG_primases; cd03364
360102010168	active site
360102010169	metal binding site [ion binding]; metal-binding site
360102010170	interdomain interaction site; other site
360102010171	DnaB-helicase binding domain of primase; Region: DnaB_bind; pfam10410
360102010172	DNA primase DnaG DnaB-binding; Region: DnaG_DnaB_bind; pfam08278
360102010173	RNA polymerase sigma factor RpoD; Validated; Region: PRK05658
360102010174	Sigma-70 factor, region 1.1; Region: Sigma70_r1_1; pfam03979
360102010175	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
360102010176	Sigma-70, non-essential region; Region: Sigma70_ner; pfam04546
360102010177	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
360102010178	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
360102010179	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
360102010180	DNA binding residues [nucleotide binding]
360102010181	Phage terminase, small subunit [DNA replication, recombination, and repair]; Region: XtmA; COG3728
360102010182	HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
360102010183	active site
360102010184	transposase/IS protein; Provisional; Region: PRK09183
360102010185	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102010186	Walker A motif; other site
360102010187	ATP binding site [chemical binding]; other site
360102010188	Walker B motif; other site
360102010189	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102010190	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102010191	DNA-binding interface [nucleotide binding]; DNA binding site
360102010192	Integrase core domain; Region: rve; pfam00665
360102010193	Fic/DOC family; Region: Fic; cl00960
360102010194	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102010195	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102010196	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472
360102010197	putative effector binding pocket; other site
360102010198	putative dimerization interface [polypeptide binding]; other site
360102010199	Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]; Region: COG3531
360102010200	DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the...; Region: DsbA_FrnE_like; cd03025
360102010201	catalytic residues [active]
360102010202	putative monooxygenase; Provisional; Region: PRK11118
360102010203	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
360102010204	homotrimer interaction site [polypeptide binding]; other site
360102010205	putative active site [active]
360102010206	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
360102010207	homotrimer interaction site [polypeptide binding]; other site
360102010208	putative active site [active]
360102010209	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2964
360102010210	YheO-like PAS domain; Region: PAS_6; pfam08348
360102010211	HTH domain; Region: HTH_22; pfam13309
360102010212	Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins; Region: PYR_PYL_RCAR_like; cd07821
360102010213	putative hydrophobic ligand binding site [chemical binding]; other site
360102010214	protein interface [polypeptide binding]; other site
360102010215	gate; other site
360102010216	Na+/H+ antiporter [Energy production and conversion]; Region: NhaC; COG1757
360102010217	Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]; Region: COG0436
360102010218	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
360102010219	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102010220	homodimer interface [polypeptide binding]; other site
360102010221	catalytic residue [active]
360102010222	multidrug resistance protein MdtN; Provisional; Region: PRK10476
360102010223	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102010224	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102010225	Predicted membrane protein [Function unknown]; Region: COG1289
360102010226	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
360102010227	Outer membrane efflux protein; Region: OEP; pfam02321
360102010228	Outer membrane efflux protein; Region: OEP; pfam02321
360102010229	beta-D-glucoside glucohydrolase; Provisional; Region: PRK15098
360102010230	Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; pfam00933
360102010231	Fibronectin type III-like domain; Region: Fn3-like; pfam14310
360102010232	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
360102010233	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102010234	dimer interface [polypeptide binding]; other site
360102010235	conserved gate region; other site
360102010236	putative PBP binding loops; other site
360102010237	ABC-ATPase subunit interface; other site
360102010238	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102010239	dimer interface [polypeptide binding]; other site
360102010240	conserved gate region; other site
360102010241	putative PBP binding loops; other site
360102010242	ABC-ATPase subunit interface; other site
360102010243	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
360102010244	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
360102010245	Transcriptional regulators [Transcription]; Region: PurR; COG1609
360102010246	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102010247	DNA binding site [nucleotide binding]
360102010248	Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily; Region: PBP1_LacI_sugar_binding_like; cd06267
360102010249	ligand binding site [chemical binding]; other site
360102010250	dimerization interface [polypeptide binding]; other site
360102010251	Cellobiose phosphorylase [Carbohydrate transport and metabolism]; Region: COG3459
360102010252	glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650
360102010253	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
360102010254	Walker A/P-loop; other site
360102010255	ATP binding site [chemical binding]; other site
360102010256	Q-loop/lid; other site
360102010257	ABC transporter signature motif; other site
360102010258	Walker B; other site
360102010259	D-loop; other site
360102010260	H-loop/switch region; other site
360102010261	TOBE domain; Region: TOBE_2; pfam08402
360102010262	Putative glucoamylase; Region: Glycoamylase; pfam10091
360102010263	Autotransporter beta-domain; Region: Autotransporter; smart00869
360102010264	Large exoproteins involved in heme utilization or adhesion [Intracellular trafficking and secretion]; Region: FhaB; COG3210
360102010265	V-type ATP synthase subunit E; Provisional; Region: PRK02292
360102010266	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102010267	haemagglutination activity domain; Region: Haemagg_act; pfam05860
360102010268	Large exoproteins involved in heme utilization or adhesion [Intracellular trafficking and secretion]; Region: FhaB; COG3210
360102010269	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102010270	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102010271	Haemagluttinin repeat; Region: Fil_haemagg_2; pfam13332
360102010272	Hemolysin activation/secretion protein [Intracellular trafficking and secretion]; Region: FhaC; COG2831
360102010273	POTRA domain, ShlB-type; Region: POTRA_2; pfam08479
360102010274	Haemolysin secretion/activation protein ShlB/FhaC/HecB; Region: ShlB; pfam03865
360102010275	VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b...; Region: vWA_subfamily; cd01464
360102010276	metal ion-dependent adhesion site (MIDAS); other site
360102010277	Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms]; Region: TerZ; COG2310
360102010278	Uncharacterized proteins involved in stress response, similar to tellurium resistance terD; Region: TerD_like; cd06974
360102010279	putative metal binding site [ion binding]; other site
360102010280	VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b...; Region: vWA_subfamily; cd01464
360102010281	metal ion-dependent adhesion site (MIDAS); other site
360102010282	VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b...; Region: vWA_subfamily; cd01464
360102010283	metal ion-dependent adhesion site (MIDAS); other site
360102010284	Protein phosphatase 2C; Region: PP2C_2; pfam13672
360102010285	Protein Kinases, catalytic domain; Region: PKc_like; cl09925
360102010286	substrate binding site [chemical binding]; other site
360102010287	activation loop (A-loop); other site
360102010288	acid-resistance membrane protein; Provisional; Region: PRK10209
360102010289	Uncharacterized conserved protein [Function unknown]; Region: HdeD; COG3247
360102010290	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
360102010291	2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli  is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the...; Region: DCR_FMN; cd02930
360102010292	active site
360102010293	FMN binding site [chemical binding]; other site
360102010294	2,4-decadienoyl-CoA binding site; other site
360102010295	catalytic residue [active]
360102010296	4Fe-4S cluster binding site [ion binding]; other site
360102010297	Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]; Region: HcaD; COG0446
360102010298	SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional; Region: PRK15001
360102010299	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102010300	S-adenosylmethionine binding site [chemical binding]; other site
360102010301	Type V secretory pathway, adhesin AidA [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: AidA; COG3468
360102010302	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43; Region: PL2_Passenger_AT; cd01344
360102010303	Autotransporter beta-domain; Region: Autotransporter; pfam03797
360102010304	Predicted metal-dependent hydrolase [General function prediction only]; Region: COG1451
360102010305	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
360102010306	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
360102010307	serine/threonine transporter SstT; Provisional; Region: PRK13628
360102010308	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
360102010309	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102010310	Bacterial inner membrane protein; Region: Imp-YgjV; pfam10688
360102010311	Domains similar to fish antifreeze type III protein; Region: SAF_AH_GD; cd11613
360102010312	galactarate dehydratase; Region: galactar-dH20; TIGR03248
360102010313	Altronate dehydratase [Carbohydrate transport and metabolism]; Region: UxaA; COG2721
360102010314	altronate oxidoreductase; Provisional; Region: PRK03643
360102010315	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
360102010316	Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125
360102010317	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
360102010318	Glucuronate isomerase; Region: UxaC; pfam02614
360102010319	Glucuronate isomerase [Carbohydrate transport and metabolism]; Region: UxaC; COG1904
360102010320	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102010321	D-galactonate transporter; Region: 2A0114; TIGR00893
360102010322	putative substrate translocation pore; other site
360102010323	DNA-binding transcriptional repressor ExuR; Provisional; Region: PRK11523
360102010324	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102010325	DNA-binding site [nucleotide binding]; DNA binding site
360102010326	FCD domain; Region: FCD; pfam07729
360102010327	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
360102010328	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
360102010329	EnvZ/OmpR regulon moderator; Provisional; Region: PRK10629
360102010330	Protein of unknown function (DUF1090); Region: DUF1090; pfam06476
360102010331	Uncharacterized conserved protein [Function unknown]; Region: ElaB; COG4575
360102010332	Predicted membrane protein [Function unknown]; Region: COG5393
360102010333	YqjK-like protein; Region: YqjK; pfam13997
360102010334	Predicted membrane protein [Function unknown]; Region: COG2259
360102010335	Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: ECM4; COG0435
360102010336	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102010337	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102010338	DNA-binding interface [nucleotide binding]; DNA binding site
360102010339	Integrase core domain; Region: rve; pfam00665
360102010340	transposase/IS protein; Provisional; Region: PRK09183
360102010341	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102010342	Walker A motif; other site
360102010343	ATP binding site [chemical binding]; other site
360102010344	Walker B motif; other site
360102010345	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663
360102010346	Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon...; Region: LbH_gamma_CA_like; cd04645
360102010347	trimer interface [polypeptide binding]; other site
360102010348	putative metal binding site [ion binding]; other site
360102010349	shikimate 5-dehydrogenase; Reviewed; Region: aroE; PRK00258
360102010350	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
360102010351	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
360102010352	shikimate binding site; other site
360102010353	NAD(P) binding site [chemical binding]; other site
360102010354	tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional; Region: PRK10634
360102010355	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
360102010356	Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]; Region: TopA; COG0551
360102010357	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
360102010358	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
360102010359	hypothetical protein; Validated; Region: PRK03430
360102010360	hypothetical protein; Provisional; Region: PRK10736
360102010361	DNA protecting protein DprA; Region: dprA; TIGR00732
360102010362	Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II)...; Region: Pep_deformylase; cd00487
360102010363	active site
360102010364	catalytic residues [active]
360102010365	metal binding site [ion binding]; metal-binding site
360102010366	methionyl-tRNA formyltransferase; Reviewed; Region: fmt; PRK00005
360102010367	Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N; cd08646
360102010368	putative active site [active]
360102010369	substrate binding site [chemical binding]; other site
360102010370	putative cosubstrate binding site; other site
360102010371	catalytic site [active]
360102010372	C-terminal domain of Formyltransferase and other enzymes; Region: Met_tRNA_FMT_C; cd08704
360102010373	substrate binding site [chemical binding]; other site
360102010374	16S rRNA methyltransferase B; Provisional; Region: PRK10901
360102010375	N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological...; Region: Methyltransferase_Sun; cd00620
360102010376	putative RNA binding site [nucleotide binding]; other site
360102010377	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102010378	S-adenosylmethionine binding site [chemical binding]; other site
360102010379	potassium transporter peripheral membrane component; Reviewed; Region: trkA; PRK09496
360102010380	TrkA-N domain; Region: TrkA_N; pfam02254
360102010381	TrkA-C domain; Region: TrkA_C; pfam02080
360102010382	TrkA-N domain; Region: TrkA_N; pfam02254
360102010383	TrkA-C domain; Region: TrkA_C; pfam02080
360102010384	Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscL; COG1970
360102010385	large-conductance mechanosensitive channel; Reviewed; Region: mscL; PRK00567
360102010386	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3036
360102010387	zinc-responsive transcriptional regulator; Provisional; Region: zntR; PRK09514
360102010388	Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators; Region: HTH_HMRTR; cd04770
360102010389	DNA binding residues [nucleotide binding]
360102010390	dimer interface [polypeptide binding]; other site
360102010391	metal binding site [ion binding]; metal-binding site
360102010392	50S ribosomal protein L17; Validated; Region: rplQ; PRK05591
360102010393	DNA-directed RNA polymerase subunit alpha; Provisional; Region: PRK05182
360102010394	N-terminal domain of the Alpha subunit of Bacterial RNA polymerase; Region: RNAP_alpha_NTD; cd06928
360102010395	alphaNTD homodimer interface [polypeptide binding]; other site
360102010396	alphaNTD - beta interaction site [polypeptide binding]; other site
360102010397	alphaNTD - beta' interaction site [polypeptide binding]; other site
360102010398	Bacterial RNA polymerase, alpha chain C terminal domain; Region: RNA_pol_A_CTD; pfam03118
360102010399	30S ribosomal protein S4; Validated; Region: rpsD; PRK05327
360102010400	Ribosomal protein S4/S9 N-terminal domain; Region: Ribosomal_S4; pfam00163
360102010401	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
360102010402	RNA binding surface [nucleotide binding]; other site
360102010403	30S ribosomal protein S11; Validated; Region: PRK05309
360102010404	30S ribosomal protein S13; Validated; Region: rpsM; PRK05179
360102010405	30S ribosomal protein S13; Region: bact_S13; TIGR03631
360102010406	preprotein translocase subunit SecY; Reviewed; Region: secY; PRK09204
360102010407	SecY translocase; Region: SecY; pfam00344
360102010408	50S ribosomal protein L15; Reviewed; Region: rplO; PRK05592
360102010409	Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that...; Region: Ribosomal_L30; cd01658
360102010410	23S rRNA binding site [nucleotide binding]; other site
360102010411	30S ribosomal protein S5; Validated; Region: rpsE; PRK00550
360102010412	Ribosomal protein S5, N-terminal domain; Region: Ribosomal_S5; pfam00333
360102010413	Ribosomal protein S5, C-terminal domain; Region: Ribosomal_S5_C; pfam03719
360102010414	Ribosomal L18/L5e:  L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA...; Region: Ribosomal_L18_L5e; cd00432
360102010415	5S rRNA interface [nucleotide binding]; other site
360102010416	23S rRNA interface [nucleotide binding]; other site
360102010417	L5 interface [polypeptide binding]; other site
360102010418	50S ribosomal protein L6; Validated; Region: rplF; PRK05498
360102010419	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
360102010420	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
360102010421	30S ribosomal protein S8; Validated; Region: rpsH; PRK00136
360102010422	30S ribosomal protein S14; Reviewed; Region: rpsN; PRK08881
360102010423	50S ribosomal protein L5; Validated; Region: rplE; PRK00010
360102010424	Ribosomal protein L5; Region: Ribosomal_L5; pfam00281
360102010425	ribosomal L5P family C-terminus; Region: Ribosomal_L5_C; pfam00673
360102010426	50S ribosomal protein L24; Reviewed; Region: rplX; PRK00004
360102010427	KOW motif of Ribosomal Protein L26; Region: KOW_RPL26; cd06089
360102010428	RNA binding site [nucleotide binding]; other site
360102010429	50S ribosomal protein L14; Validated; Region: rplN; PRK05483
360102010430	30S ribosomal protein S17; Reviewed; Region: rpsQ; PRK05610
360102010431	Ribosomal L29 protein/HIP.  L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals.  L29 is located on the surface of the large ribosomal subunit, where it...; Region: Ribosomal_L29_HIP; cd00427
360102010432	23S rRNA interface [nucleotide binding]; other site
360102010433	putative translocon interaction site; other site
360102010434	signal recognition particle (SRP54) interaction site; other site
360102010435	L23 interface [polypeptide binding]; other site
360102010436	trigger factor interaction site; other site
360102010437	Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433
360102010438	23S rRNA interface [nucleotide binding]; other site
360102010439	5S rRNA interface [nucleotide binding]; other site
360102010440	putative antibiotic binding site [chemical binding]; other site
360102010441	L25 interface [polypeptide binding]; other site
360102010442	L27 interface [polypeptide binding]; other site
360102010443	30S ribosomal protein S3; Reviewed; Region: rpsC; PRK00310
360102010444	K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3  is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel.  The KH...; Region: 30S_S3_KH; cd02412
360102010445	G-X-X-G motif; other site
360102010446	Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189
360102010447	Ribosomal protein L22/L17e.  L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit.  It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336
360102010448	protein-rRNA interface [nucleotide binding]; other site
360102010449	putative translocon binding site; other site
360102010450	30S ribosomal protein S19; Reviewed; Region: rpsS; PRK00357
360102010451	50S ribosomal protein L2; Validated; Region: rplB; PRK09374
360102010452	Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181
360102010453	Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947
360102010454	50S ribosomal protein L23; Reviewed; Region: rplW; PRK05738
360102010455	50S ribosomal protein L4; Provisional; Region: rplD; PRK05319
360102010456	50S ribosomal protein L3; Validated; Region: rplC; PRK00001
360102010457	30S ribosomal protein S10; Reviewed; Region: rpsJ; PRK00596
360102010458	Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]; Region: Bfr; COG2193
360102010459	Bacterioferritin, ferritin-like diiron-binding domain; Region: Bacterioferritin; cd00907
360102010460	heme binding site [chemical binding]; other site
360102010461	ferroxidase pore; other site
360102010462	ferroxidase diiron center [ion binding]; other site
360102010463	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102010464	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102010465	DNA-binding interface [nucleotide binding]; DNA binding site
360102010466	Integrase core domain; Region: rve; pfam00665
360102010467	transposase/IS protein; Provisional; Region: PRK09183
360102010468	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102010469	Walker A motif; other site
360102010470	ATP binding site [chemical binding]; other site
360102010471	Walker B motif; other site
360102010472	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102010473	elongation factor Tu; Reviewed; Region: PRK00049
360102010474	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
360102010475	G1 box; other site
360102010476	GEF interaction site [polypeptide binding]; other site
360102010477	GTP/Mg2+ binding site [chemical binding]; other site
360102010478	Switch I region; other site
360102010479	G2 box; other site
360102010480	G3 box; other site
360102010481	Switch II region; other site
360102010482	G4 box; other site
360102010483	G5 box; other site
360102010484	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
360102010485	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
360102010486	Antibiotic Binding Site [chemical binding]; other site
360102010487	elongation factor G; Reviewed; Region: PRK00007
360102010488	Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis; Region: EF-G; cd01886
360102010489	G1 box; other site
360102010490	putative GEF interaction site [polypeptide binding]; other site
360102010491	GTP/Mg2+ binding site [chemical binding]; other site
360102010492	Switch I region; other site
360102010493	G2 box; other site
360102010494	G3 box; other site
360102010495	Switch II region; other site
360102010496	G4 box; other site
360102010497	G5 box; other site
360102010498	EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis...; Region: EFG_mtEFG_II; cd04088
360102010499	EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2...; Region: EFG_mtEFG1_IV; cd01434
360102010500	EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G.  Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region: EFG_mtEFG_C; cd03713
360102010501	30S ribosomal protein S7; Validated; Region: PRK05302
360102010502	S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368
360102010503	S17 interaction site [polypeptide binding]; other site
360102010504	S8 interaction site; other site
360102010505	16S rRNA interaction site [nucleotide binding]; other site
360102010506	streptomycin interaction site [chemical binding]; other site
360102010507	23S rRNA interaction site [nucleotide binding]; other site
360102010508	aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site
360102010509	sulfur transfer complex subunit TusB; Provisional; Region: PRK13510
360102010510	sulfur relay protein TusC; Validated; Region: PRK00211
360102010511	sulfur transfer complex subunit TusD; Validated; Region: PRK00207
360102010512	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2964
360102010513	YheO-like PAS domain; Region: PAS_6; pfam08348
360102010514	HTH domain; Region: HTH_22; pfam13309
360102010515	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Region: FKBP_N; pfam01346
360102010516	FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]; Region: FkpA; COG0545
360102010517	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
360102010518	phi X174 lysis protein; Provisional; Region: PRK02793
360102010519	FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK10737
360102010520	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
360102010521	Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]; Region: COG3529
360102010522	glutathione-regulated potassium-efflux system protein KefB; Provisional; Region: PRK03659
360102010523	transporter, monovalent cation:proton antiporter-2 (CPA2) family; Region: 2a37; TIGR00932
360102010524	TrkA-N domain; Region: TrkA_N; pfam02254
360102010525	glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional; Region: PRK04930
360102010526	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102010527	Walker A/P-loop; other site
360102010528	ATP binding site [chemical binding]; other site
360102010529	ABC transporter; Region: ABC_tran; pfam00005
360102010530	Q-loop/lid; other site
360102010531	ABC transporter signature motif; other site
360102010532	Walker B; other site
360102010533	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102010534	H-loop/switch region; other site
360102010535	ABC transporter; Region: ABC_tran_2; pfam12848
360102010536	ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CbiO; COG1122
360102010537	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
360102010538	putative glycosyl transferase; Provisional; Region: PRK10073
360102010539	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
360102010540	active site
360102010541	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
360102010542	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
360102010543	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
360102010544	Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: TauD; COG2175
360102010545	taurine dioxygenase; Reviewed; Region: tauD; PRK09553
360102010546	active site
360102010547	iron coordination sites [ion binding]; other site
360102010548	substrate binding pocket [chemical binding]; other site
360102010549	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
360102010550	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102010551	dimer interface [polypeptide binding]; other site
360102010552	conserved gate region; other site
360102010553	putative PBP binding loops; other site
360102010554	ABC-ATPase subunit interface; other site
360102010555	taurine transporter ATP-binding subunit; Provisional; Region: tauB; PRK11248
360102010556	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
360102010557	Walker A/P-loop; other site
360102010558	ATP binding site [chemical binding]; other site
360102010559	Q-loop/lid; other site
360102010560	ABC transporter signature motif; other site
360102010561	Walker B; other site
360102010562	D-loop; other site
360102010563	H-loop/switch region; other site
360102010564	ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: TauA; COG4521
360102010565	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102010566	substrate binding pocket [chemical binding]; other site
360102010567	membrane-bound complex binding site; other site
360102010568	hinge residues; other site
360102010569	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
360102010570	putative hydrolase; Provisional; Region: PRK10985
360102010571	hypothetical protein; Provisional; Region: PRK04966
360102010572	phosphoribulokinase; Provisional; Region: PRK15453
360102010573	active site
360102010574	Protein of unknown function (DUF1240); Region: DUF1240; pfam06836
360102010575	hypothetical protein; Provisional; Region: PRK10738
360102010576	DNA-binding transcriptional dual regulator Crp; Provisional; Region: PRK11753
360102010577	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
360102010578	ligand binding site [chemical binding]; other site
360102010579	flexible hinge region; other site
360102010580	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092
360102010581	putative switch regulator; other site
360102010582	non-specific DNA interactions [nucleotide binding]; other site
360102010583	DNA binding site [nucleotide binding]
360102010584	sequence specific DNA binding site [nucleotide binding]; other site
360102010585	putative cAMP binding site [chemical binding]; other site
360102010586	integral membrane protein, YccS/YhfK family; Region: YCCS_YHJK; TIGR01667
360102010587	FUSC-like inner membrane protein yccS; Region: FUSC-like; pfam12805
360102010588	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
360102010589	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed; Region: argD; PRK05093
360102010590	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
360102010591	inhibitor-cofactor binding pocket; inhibition site
360102010592	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102010593	catalytic residue [active]
360102010594	para-aminobenzoate synthase component II; Provisional; Region: PRK08857
360102010595	Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase; Region: GATase1_Anthranilate_Synthase; cd01743
360102010596	glutamine binding [chemical binding]; other site
360102010597	catalytic triad [active]
360102010598	Bacterial protein of unknown function (DUF853); Region: DUF853; pfam05872
360102010599	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl17251
360102010600	peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional; Region: PRK10903
360102010601	cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these...; Region: cyclophilin_EcCYP_like; cd01920
360102010602	substrate binding site [chemical binding]; other site
360102010603	Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]; Region: CelF; COG1486
360102010604	Glycoside Hydrolases Family 4; Phospho-beta-glucosidase; Region: GH4_P_beta_glucosidase; cd05296
360102010605	NAD binding site [chemical binding]; other site
360102010606	sugar binding site [chemical binding]; other site
360102010607	divalent metal binding site [ion binding]; other site
360102010608	tetramer (dimer of dimers) interface [polypeptide binding]; other site
360102010609	dimer interface [polypeptide binding]; other site
360102010610	Transcriptional regulators [Transcription]; Region: PurR; COG1609
360102010611	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102010612	DNA binding site [nucleotide binding]
360102010613	domain linker motif; other site
360102010614	Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism; Region: PBP1_GalS_like; cd06270
360102010615	dimerization interface (closed form) [polypeptide binding]; other site
360102010616	ligand binding site [chemical binding]; other site
360102010617	TonB-dependent copper receptor; Region: TonB-copper; TIGR01778
360102010618	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102010619	N-terminal plug; other site
360102010620	ligand-binding site [chemical binding]; other site
360102010621	putative transporter; Provisional; Region: PRK03699
360102010622	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102010623	putative substrate translocation pore; other site
360102010624	cytosine deaminase; Provisional; Region: PRK09230
360102010625	Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi; Region: Bact_CD; cd01293
360102010626	active site
360102010627	nitrite reductase subunit NirD; Provisional; Region: PRK14989
360102010628	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
360102010629	BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; pfam04324
360102010630	BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; pfam04324
360102010631	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
360102010632	Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while...; Region: Rieske_NirD; cd03529
360102010633	nitrite transporter NirC; Provisional; Region: PRK11562
360102010634	siroheme synthase; Provisional; Region: cysG; PRK10637
360102010635	Putative NAD(P)-binding; Region: NAD_binding_7; pfam13241
360102010636	Sirohaem synthase dimerisation region; Region: CysG_dimeriser; pfam10414
360102010637	Uroporphyrin-III C-methyltransferase (S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); Region: SUMT; cd11642
360102010638	active site
360102010639	SAM binding site [chemical binding]; other site
360102010640	homodimer interface [polypeptide binding]; other site
360102010641	tryptophanyl-tRNA synthetase II; Reviewed; Region: PRK12282
360102010642	catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806
360102010643	active site
360102010644	HIGH motif; other site
360102010645	dimer interface [polypeptide binding]; other site
360102010646	KMSKS motif; other site
360102010647	phosphoglycolate phosphatase; Provisional; Region: PRK13222
360102010648	haloacid dehalogenase-like hydrolase; Region: HAD; cl17202
360102010649	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102010650	motif II; other site
360102010651	Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose...; Region: RPE; cd00429
360102010652	ribulose-phosphate 3-epimerase; Region: rpe; TIGR01163
360102010653	substrate binding site [chemical binding]; other site
360102010654	hexamer interface [polypeptide binding]; other site
360102010655	metal binding site [ion binding]; metal-binding site
360102010656	DNA adenine methylase; Provisional; Region: PRK10904
360102010657	hypothetical protein; Reviewed; Region: PRK11901
360102010658	cell division protein DamX; Validated; Region: PRK10905
360102010659	Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis; Region: DHQS; cd08195
360102010660	active site
360102010661	dimer interface [polypeptide binding]; other site
360102010662	metal binding site [ion binding]; metal-binding site
360102010663	shikimate kinase; Reviewed; Region: aroK; PRK00131
360102010664	Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis...; Region: SK; cd00464
360102010665	ADP binding site [chemical binding]; other site
360102010666	magnesium binding site [ion binding]; other site
360102010667	putative shikimate binding site; other site
360102010668	putative outer membrane porin HofQ; Provisional; Region: hofQ; PRK13568
360102010669	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
360102010670	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
360102010671	Protein of unknown function (DUF2531); Region: DUF2531; pfam10748
360102010672	Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilN; COG3166
360102010673	Fimbrial assembly protein (PilN); Region: PilN; pfam05137
360102010674	Competence protein A; Region: Competence_A; pfam11104
360102010675	penicillin-binding protein 1a; Provisional; Region: mrcA; PRK11636
360102010676	Transglycosylase; Region: Transgly; pfam00912
360102010677	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
360102010678	adenosine nucleotide hydrolase NudE; Provisional; Region: nudE; PRK11762
360102010679	ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+; Region: ADPRase_NUDT5; cd03424
360102010680	ADP-ribose binding site [chemical binding]; other site
360102010681	dimer interface [polypeptide binding]; other site
360102010682	active site
360102010683	nudix motif; other site
360102010684	metal binding site [ion binding]; metal-binding site
360102010685	Intracellular growth attenuator protein IgaA; Region: IgaA; pfam07095
360102010686	Predicted hydrolase (HAD superfamily) [General function prediction only]; Region: COG1011
360102010687	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cl17915
360102010688	motif I; other site
360102010689	active site
360102010690	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102010691	motif II; other site
360102010692	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
360102010693	RNA binding surface [nucleotide binding]; other site
360102010694	Hsp33-like chaperonin; Reviewed; Region: hslO; PRK00114
360102010695	Heat shock protein 33 (Hsp33):  Cytosolic protein that acts as a molecular chaperone under oxidative conditions.  In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat...; Region: Hsp33; cd00498
360102010696	dimerization interface [polypeptide binding]; other site
360102010697	domain crossover interface; other site
360102010698	redox-dependent activation switch; other site
360102010699	Phosphoenolpyruvate carboxykinase; Region: PEPCK_ATP; pfam01293
360102010700	Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and...; Region: PEPCK_ATP; cd00484
360102010701	active site
360102010702	substrate-binding site [chemical binding]; other site
360102010703	metal-binding site [ion binding]
360102010704	ATP binding site [chemical binding]; other site
360102010705	osmolarity sensor protein; Provisional; Region: envZ; PRK09467
360102010706	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102010707	dimerization interface [polypeptide binding]; other site
360102010708	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102010709	dimer interface [polypeptide binding]; other site
360102010710	phosphorylation site [posttranslational modification]
360102010711	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102010712	ATP binding site [chemical binding]; other site
360102010713	Mg2+ binding site [ion binding]; other site
360102010714	G-X-G motif; other site
360102010715	osmolarity response regulator; Provisional; Region: ompR; PRK09468
360102010716	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102010717	active site
360102010718	phosphorylation site [posttranslational modification]
360102010719	intermolecular recognition site; other site
360102010720	dimerization interface [polypeptide binding]; other site
360102010721	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102010722	DNA binding site [nucleotide binding]
360102010723	transcription elongation factor GreB; Reviewed; Region: greB; PRK01885
360102010724	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
360102010725	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
360102010726	Transcriptional accessory protein [Transcription]; Region: Tex; COG2183
360102010727	Tex-like protein N-terminal domain; Region: Tex_N; pfam09371
360102010728	Likely ribonuclease with RNase H fold; Region: YqgFc; smart00732
360102010729	S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression; Region: S1_Tex; cd05685
360102010730	RNA binding site [nucleotide binding]; other site
360102010731	ferrous iron transport protein A; Reviewed; Region: feoA; PRK09555
360102010732	ferrous iron transport protein B; Reviewed; Region: feoB; PRK09554
360102010733	Ferrous iron transport protein B (FeoB) family; Region: FeoB; cd01879
360102010734	G1 box; other site
360102010735	GTP/Mg2+ binding site [chemical binding]; other site
360102010736	Switch I region; other site
360102010737	G2 box; other site
360102010738	G3 box; other site
360102010739	Switch II region; other site
360102010740	G4 box; other site
360102010741	G5 box; other site
360102010742	Nucleoside recognition; Region: Gate; pfam07670
360102010743	Ferrous iron transport protein B C terminus; Region: FeoB_C; pfam07664
360102010744	Nucleoside recognition; Region: Gate; pfam07670
360102010745	FeoC like transcriptional regulator; Region: FeoC; cl17677
360102010746	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
360102010747	carboxylesterase BioH; Provisional; Region: PRK10349
360102010748	DNA utilization protein GntX; Provisional; Region: PRK11595
360102010749	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
360102010750	active site
360102010751	Fe/S biogenesis protein NfuA; Provisional; Region: PRK11190
360102010752	Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]; Region: sufA; COG0316
360102010753	Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]; Region: COG0694
360102010754	4-alpha-glucanotransferase; Provisional; Region: malQ; PRK11052
360102010755	4-alpha-glucanotransferase [Carbohydrate transport and metabolism]; Region: MalQ; COG1640
360102010756	maltodextrin phosphorylase; Provisional; Region: PRK14985
360102010757	This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of...; Region: GT1_Glycogen_Phosphorylase; cd04300
360102010758	active site pocket [active]
360102010759	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
360102010760	transcriptional regulator MalT; Provisional; Region: PRK04841
360102010761	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102010762	DNA binding residues [nucleotide binding]
360102010763	dimerization interface [polypeptide binding]; other site
360102010764	GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a...; Region: GlpE_ST; cd01444
360102010765	active site residue [active]
360102010766	intramembrane serine protease GlpG; Provisional; Region: PRK10907
360102010767	Protein of unknown function (DUF3582); Region: DUF3582; pfam12122
360102010768	Membrane associated serine protease [Amino acid transport and metabolism]; Region: COG0705
360102010769	DNA-binding transcriptional repressor GlpR; Provisional; Region: PRK10906
360102010770	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
360102010771	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
360102010772	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
360102010773	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102010774	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102010775	transposase/IS protein; Provisional; Region: PRK09183
360102010776	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102010777	Walker A motif; other site
360102010778	ATP binding site [chemical binding]; other site
360102010779	Walker B motif; other site
360102010780	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102010781	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102010782	DNA-binding interface [nucleotide binding]; DNA binding site
360102010783	Integrase core domain; Region: rve; pfam00665
360102010784	putative transposase OrfB; Reviewed; Region: PHA02517
360102010785	HTH-like domain; Region: HTH_21; pfam13276
360102010786	Integrase core domain; Region: rve; pfam00665
360102010787	Integrase core domain; Region: rve_2; pfam13333
360102010788	Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; Region: COG3322
360102010789	PAS domain S-box; Region: sensory_box; TIGR00229
360102010790	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
360102010791	putative active site [active]
360102010792	heme pocket [chemical binding]; other site
360102010793	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
360102010794	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
360102010795	metal binding site [ion binding]; metal-binding site
360102010796	active site
360102010797	I-site; other site
360102010798	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
360102010799	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
360102010800	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102010801	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102010802	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
360102010803	ShET2 enterotoxin, N-terminal region; Region: Toxin_15; pfam07906
360102010804	Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018
360102010805	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43; Region: PL2_Passenger_AT; cd01344
360102010806	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
360102010807	Autotransporter beta-domain; Region: Autotransporter; pfam03797
360102010808	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
360102010809	Leucine-rich repeat (LRR) protein [Function unknown]; Region: COG4886
360102010810	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
360102010811	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102010812	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
360102010813	Leucine-rich repeat (LRR) protein [Function unknown]; Region: COG4886
360102010814	Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]; Region: AbgT; COG2978
360102010815	p-Aminobenzoyl-glutamate transporter family; Region: ydaH; TIGR00819
360102010816	Di- and tripeptidases [Amino acid transport and metabolism]; Region: PepD; COG2195
360102010817	M20 Peptidase T specifically cleaves tripeptides; Region: M20_peptT; cd03892
360102010818	metal binding site [ion binding]; metal-binding site
360102010819	dimer interface [polypeptide binding]; other site
360102010820	Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]; Region: CirA; COG1629
360102010821	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102010822	N-terminal plug; other site
360102010823	ligand-binding site [chemical binding]; other site
360102010824	acyl-CoA synthetase; Validated; Region: PRK05850
360102010825	Fatty acyl-AMP ligase (FAAL); Region: FAAL; cd05931
360102010826	acyl-activating enzyme (AAE) consensus motif; other site
360102010827	active site
360102010828	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
360102010829	polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or...; Region: PKS; cd00833
360102010830	Beta-ketoacyl synthase; Region: PKS_KS; smart00825
360102010831	active site
360102010832	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102010833	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102010834	DNA-binding interface [nucleotide binding]; DNA binding site
360102010835	Integrase core domain; Region: rve; pfam00665
360102010836	transposase/IS protein; Provisional; Region: PRK09183
360102010837	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102010838	Walker A motif; other site
360102010839	ATP binding site [chemical binding]; other site
360102010840	Walker B motif; other site
360102010841	Condensation domain; Region: Condensation; pfam00668
360102010842	Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020
360102010843	Nonribosomal peptide synthase; Region: NRPS; pfam08415
360102010844	The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes; Region: A_NRPS_TlmIV_like; cd12114
360102010845	acyl-activating enzyme (AAE) consensus motif; other site
360102010846	AMP binding site [chemical binding]; other site
360102010847	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
360102010848	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
360102010849	Condensation domain; Region: Condensation; pfam00668
360102010850	Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020
360102010851	Nonribosomal peptide synthase; Region: NRPS; pfam08415
360102010852	The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes; Region: A_NRPS_TlmIV_like; cd12114
360102010853	amino acid adenylation domain; Region: AA-adenyl-dom; TIGR01733
360102010854	acyl-activating enzyme (AAE) consensus motif; other site
360102010855	AMP binding site [chemical binding]; other site
360102010856	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
360102010857	Condensation domain; Region: Condensation; pfam00668
360102010858	Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020
360102010859	Nonribosomal peptide synthase; Region: NRPS; pfam08415
360102010860	The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes; Region: A_NRPS_TlmIV_like; cd12114
360102010861	acyl-activating enzyme (AAE) consensus motif; other site
360102010862	AMP binding site [chemical binding]; other site
360102010863	Methyltransferase domain; Region: Methyltransf_31; pfam13847
360102010864	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102010865	S-adenosylmethionine binding site [chemical binding]; other site
360102010866	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
360102010867	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
360102010868	Thioesterase domain; Region: Thioesterase; pfam00975
360102010869	Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]; Region: LYS9; COG1748
360102010870	Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: PchG; COG4693
360102010871	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
360102010872	Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: GrsT; COG3208
360102010873	siderophore transporter, RhtX/FptX family; Region: sider_RhtX_FptX; TIGR02718
360102010874	muropeptide transporter; Validated; Region: ampG; cl17669
360102010875	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
360102010876	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102010877	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102010878	Walker A/P-loop; other site
360102010879	ATP binding site [chemical binding]; other site
360102010880	Q-loop/lid; other site
360102010881	ABC transporter signature motif; other site
360102010882	Walker B; other site
360102010883	D-loop; other site
360102010884	H-loop/switch region; other site
360102010885	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
360102010886	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102010887	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102010888	Walker A/P-loop; other site
360102010889	ATP binding site [chemical binding]; other site
360102010890	Q-loop/lid; other site
360102010891	ABC transporter signature motif; other site
360102010892	Walker B; other site
360102010893	D-loop; other site
360102010894	H-loop/switch region; other site
360102010895	fructuronate transporter; Provisional; Region: PRK10034
360102010896	gluconate transporter; Region: gntP; TIGR00791
360102010897	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43; Region: PL2_Passenger_AT; cd01344
360102010898	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
360102010899	Autotransporter beta-domain; Region: Autotransporter; smart00869
360102010900	type VI secretion system Vgr family protein; Region: VI_Rhs_Vgr; TIGR03361
360102010901	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
360102010902	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
360102010903	Gp5 C-terminal repeat (3 copies); Region: Gp5_C; pfam06715
360102010904	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
360102010905	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
360102010906	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
360102010907	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
360102010908	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
360102010909	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
360102010910	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
360102010911	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
360102010912	RHS Repeat; Region: RHS_repeat; pfam05593
360102010913	RHS Repeat; Region: RHS_repeat; cl11982
360102010914	RHS protein; Region: RHS; pfam03527
360102010915	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
360102010916	hypothetical protein; Provisional; Region: PRK10039
360102010917	Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]; Region: CitT; COG0471
360102010918	Permease SLC13 (solute carrier 13).  The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is...; Region: SLC13_permease; cd01115
360102010919	transmembrane helices; other site
360102010920	Transcriptional regulators [Transcription]; Region: PurR; COG1609
360102010921	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102010922	DNA binding site [nucleotide binding]
360102010923	domain linker motif; other site
360102010924	Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors; Region: PBP1_sucrose_transcription_regulator; cd06288
360102010925	putative dimerization interface [polypeptide binding]; other site
360102010926	putative ligand binding site [chemical binding]; other site
360102010927	Sugar-binding cellulase-like; Region: Cellulase-like; pfam12876
360102010928	putative transposase OrfB; Reviewed; Region: PHA02517
360102010929	HTH-like domain; Region: HTH_21; pfam13276
360102010930	Integrase core domain; Region: rve; pfam00665
360102010931	Integrase core domain; Region: rve_2; pfam13333
360102010932	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
360102010933	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102010934	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102010935	Bacterial protein of unknown function (DUF879); Region: DUF879; cl15462
360102010936	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3520
360102010937	Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular    transport; Signal transduction mechanisms]; Region: COG3456
360102010938	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3521
360102010939	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3522
360102010940	Bacterial protein of unknown function (DUF876); Region: DUF876; pfam05936
360102010941	Type VI protein secretion system component VasF [Intracellular    trafficking, secretion, and vesicular transport]; Region: COG3455
360102010942	type VI secretion ATPase, ClpV1 family; Region: VI_ClpV1; TIGR03345
360102010943	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102010944	Walker A motif; other site
360102010945	ATP binding site [chemical binding]; other site
360102010946	Walker B motif; other site
360102010947	arginine finger; other site
360102010948	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102010949	Walker A motif; other site
360102010950	ATP binding site [chemical binding]; other site
360102010951	Walker B motif; other site
360102010952	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
360102010953	Bacterial regulatory protein, Fis family; Region: HTH_8; cl17420
360102010954	type VI secretion-associated protein, VC_A0118 family; Region: VI_minor_1; TIGR03360
360102010955	ImpA-related N-terminal; Region: ImpA-rel_N; pfam06812
360102010956	Protein of unknown function (DUF1020); Region: DUF1020; pfam06255
360102010957	type VI secretion-associated protein, VC_A0119 family; Region: VI_chp_7; TIGR03362
360102010958	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3515
360102010959	Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and    vesicular transport]; Region: IcmF; COG3523
360102010960	Intracellular multiplication and human macrophage-killing; Region: IcmF-related; pfam06761
360102010961	Protein of unknown function (DUF1215); Region: DUF1215; pfam06744
360102010962	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3515
360102010963	ImpA-related N-terminal; Region: ImpA-rel_N; pfam06812
360102010964	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3515
360102010965	ImpA domain protein; Region: DUF3702; pfam12486
360102010966	type VI secretion system Vgr family protein; Region: VI_Rhs_Vgr; TIGR03361
360102010967	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
360102010968	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
360102010969	Uncharacterized conserved protein [Function unknown]; Region: COG5435
360102010970	PAAR motif; Region: PAAR_motif; pfam05488
360102010971	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
360102010972	RHS Repeat; Region: RHS_repeat; pfam05593
360102010973	RHS Repeat; Region: RHS_repeat; pfam05593
360102010974	RHS Repeat; Region: RHS_repeat; cl11982
360102010975	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
360102010976	RHS protein; Region: RHS; pfam03527
360102010977	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
360102010978	DNase/tRNase domain of colicin-like bacteriocin; Region: Colicin-DNase; cl15861
360102010979	SMI1 / KNR4 family (SUKH-1); Region: SMI1_KNR4; pfam09346
360102010980	Toxin SymE, type I toxin-antitoxin system; Region: SymE_toxin; cl07446
360102010981	Toxin SymE, type I toxin-antitoxin system; Region: SymE_toxin; pfam08845
360102010982	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
360102010983	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
360102010984	non-specific DNA binding site [nucleotide binding]; other site
360102010985	salt bridge; other site
360102010986	sequence-specific DNA binding site [nucleotide binding]; other site
360102010987	ImpA domain protein; Region: DUF3702; pfam12486
360102010988	type VI secretion system Vgr family protein; Region: VI_Rhs_Vgr; TIGR03361
360102010989	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
360102010990	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
360102010991	Gp5 C-terminal repeat (3 copies); Region: Gp5_C; pfam06715
360102010992	Uncharacterized conserved protein [Function unknown]; Region: COG5435
360102010993	PAAR motif; Region: PAAR_motif; pfam05488
360102010994	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
360102010995	RHS Repeat; Region: RHS_repeat; pfam05593
360102010996	RHS Repeat; Region: RHS_repeat; pfam05593
360102010997	RHS Repeat; Region: RHS_repeat; pfam05593
360102010998	RHS Repeat; Region: RHS_repeat; pfam05593
360102010999	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
360102011000	RHS protein; Region: RHS; pfam03527
360102011001	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
360102011002	Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082
360102011003	AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of...; Region: AP2Ec; cl12060
360102011004	AP (apurinic/apyrimidinic) site pocket; other site
360102011005	DNA interaction; other site
360102011006	Metal-binding active site; metal-binding site
360102011007	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
360102011008	transposase/IS protein; Provisional; Region: PRK09183
360102011009	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102011010	Walker A motif; other site
360102011011	ATP binding site [chemical binding]; other site
360102011012	Walker B motif; other site
360102011013	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102011014	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102011015	DNA-binding interface [nucleotide binding]; DNA binding site
360102011016	Integrase core domain; Region: rve; pfam00665
360102011017	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
360102011018	Coenzyme A binding pocket [chemical binding]; other site
360102011019	pantothenate kinase; Provisional; Region: PRK05439
360102011020	Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point...; Region: PanK; cd02025
360102011021	ATP-binding site [chemical binding]; other site
360102011022	CoA-binding site [chemical binding]; other site
360102011023	Mg2+-binding site [ion binding]; other site
360102011024	Biotin operon repressor [Transcription]; Region: BirA; COG1654
360102011025	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional; Region: PRK11886
360102011026	Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; pfam03099
360102011027	Biotin protein ligase C terminal domain; Region: BPL_C; pfam02237
360102011028	UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional; Region: murB; PRK00046
360102011029	FAD binding domain; Region: FAD_binding_4; pfam01565
360102011030	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; Region: MurB_C; pfam02873
360102011031	protoporphyrinogen oxidase; Provisional; Region: hemG; PRK11104
360102011032	potassium transporter; Provisional; Region: PRK10750
360102011033	potassium uptake protein, TrkH family; Region: 2a38; TIGR00933
360102011034	Uncharacterized protein family UPF0029; Region: UPF0029; pfam01205
360102011035	Domain of unknown function (DUF1949); Region: DUF1949; pfam09186
360102011036	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102011037	Uncharacterized protein family UPF0029; Region: UPF0029; pfam01205
360102011038	proline dipeptidase; Provisional; Region: PRK13607
360102011039	Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on...; Region: Prolidase; cd01087
360102011040	active site
360102011041	multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadB; PRK11730
360102011042	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
360102011043	substrate binding site [chemical binding]; other site
360102011044	oxyanion hole (OAH) forming residues; other site
360102011045	trimer interface [polypeptide binding]; other site
360102011046	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
360102011047	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
360102011048	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
360102011049	3-ketoacyl-CoA thiolase; Reviewed; Region: fadA; PRK08947
360102011050	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
360102011051	dimer interface [polypeptide binding]; other site
360102011052	active site
360102011053	FMN reductase; Validated; Region: fre; PRK08051
360102011054	NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN; Region: flavin_oxioreductase; cd06189
360102011055	FAD binding pocket [chemical binding]; other site
360102011056	FAD binding motif [chemical binding]; other site
360102011057	phosphate binding motif [ion binding]; other site
360102011058	beta-alpha-beta structure motif; other site
360102011059	NAD binding pocket [chemical binding]; other site
360102011060	3-octaprenyl-4-hydroxybenzoate decarboxylase; Provisional; Region: PRK10922
360102011061	transcriptional activator RfaH; Provisional; Region: rfaH; PRK09014
360102011062	N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), RfaH; Region: NGN_SP_RfaH; cd09892
360102011063	NusG contains an NGN domain at its N-terminus and KOW motif at its C-terminus; Region: KOW_NusG; cd06091
360102011064	heterodimer interface [polypeptide binding]; other site
360102011065	homodimer interface [polypeptide binding]; other site
360102011066	Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the...; Region: ALAD_PBGS_aspartate_rich; cd04823
360102011067	dimer interface [polypeptide binding]; other site
360102011068	allosteric magnesium binding site [ion binding]; other site
360102011069	active site
360102011070	aspartate-rich active site metal binding site; other site
360102011071	Schiff base residues; other site
360102011072	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
360102011073	transposase/IS protein; Provisional; Region: PRK09183
360102011074	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102011075	Walker A motif; other site
360102011076	ATP binding site [chemical binding]; other site
360102011077	Walker B motif; other site
360102011078	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102011079	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102011080	DNA-binding interface [nucleotide binding]; DNA binding site
360102011081	Integrase core domain; Region: rve; pfam00665
360102011082	type I secretion membrane fusion protein, HlyD family; Region: type_I_hlyD; TIGR01843
360102011083	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102011084	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102011085	ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]; Region: SunT; COG2274
360102011086	A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various...; Region: Peptidase_C39C; cd02419
360102011087	putative active site [active]
360102011088	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
360102011089	ATP-binding cassette domain of PrtD, subfamily C; Region: ABCC_Protease_Secretion; cd03246
360102011090	Walker A/P-loop; other site
360102011091	ATP binding site [chemical binding]; other site
360102011092	Q-loop/lid; other site
360102011093	ABC transporter signature motif; other site
360102011094	Walker B; other site
360102011095	D-loop; other site
360102011096	H-loop/switch region; other site
360102011097	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102011098	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3074
360102011099	Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal...; Region: MIP; cd00333
360102011100	amphipathic channel; other site
360102011101	Asn-Pro-Ala signature motifs; other site
360102011102	glycerol kinase; Provisional; Region: glpK; PRK00047
360102011103	Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases; Region: FGGY_EcGK_like; cd07786
360102011104	N- and C-terminal domain interface [polypeptide binding]; other site
360102011105	active site
360102011106	MgATP binding site [chemical binding]; other site
360102011107	catalytic site [active]
360102011108	metal binding site [ion binding]; metal-binding site
360102011109	glycerol binding site [chemical binding]; other site
360102011110	homotetramer interface [polypeptide binding]; other site
360102011111	homodimer interface [polypeptide binding]; other site
360102011112	FBP binding site [chemical binding]; other site
360102011113	protein IIAGlc interface [polypeptide binding]; other site
360102011114	Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core...; Region: FBPase_glpX; cd01516
360102011115	Bacterial fructose-1,6-bisphosphatase, glpX-encoded; Region: FBPase_glpX; pfam03320
360102011116	putative active site [active]
360102011117	ferredoxin-NADP reductase; Provisional; Region: PRK10926
360102011118	Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently...; Region: FNR1; cd06195
360102011119	FAD binding pocket [chemical binding]; other site
360102011120	FAD binding motif [chemical binding]; other site
360102011121	phosphate binding motif [ion binding]; other site
360102011122	beta-alpha-beta structure motif; other site
360102011123	NAD binding pocket [chemical binding]; other site
360102011124	Predicted membrane protein [Function unknown]; Region: COG3152
360102011125	Protein of unknown function (DUF1454); Region: DUF1454; pfam07305
360102011126	Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311
360102011127	triosephosphate isomerase; Provisional; Region: PRK14567
360102011128	substrate binding site [chemical binding]; other site
360102011129	dimer interface [polypeptide binding]; other site
360102011130	catalytic triad [active]
360102011131	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102011132	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102011133	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102011134	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102011135	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
360102011136	dimerization interface [polypeptide binding]; other site
360102011137	Uncharacterized proteins, LmbE homologs [Function unknown]; Region: COG2120
360102011138	hypothetical protein; Validated; Region: PRK06201
360102011139	hypothetical protein; Provisional; Region: PRK09262
360102011140	Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]; Region: CitT; COG0471
360102011141	Anion permease ArsB/NhaD.  These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life.  A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cd00625
360102011142	transmembrane helices; other site
360102011143	ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: ModA; COG0725
360102011144	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
360102011145	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102011146	Bacterial extracellular solute-binding protein; Region: SBP_bac_11; pfam13531
360102011147	substrate binding pocket [chemical binding]; other site
360102011148	membrane-bound complex binding site; other site
360102011149	hinge residues; other site
360102011150	6-phosphofructokinase; Provisional; Region: PRK03202
360102011151	6-phosphofructokinase; Region: PFKA_ATP; TIGR02482
360102011152	active site
360102011153	ADP/pyrophosphate binding site [chemical binding]; other site
360102011154	dimerization interface [polypeptide binding]; other site
360102011155	allosteric effector site; other site
360102011156	fructose-1,6-bisphosphate binding site; other site
360102011157	ferrous iron efflux protein F; Reviewed; Region: fieF; PRK09509
360102011158	Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053
360102011159	Uncharacterized conserved protein [Function unknown]; Region: COG5464
360102011160	Putative transposase, YhgA-like; Region: Transposase_31; pfam04754
360102011161	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
360102011162	active site
360102011163	Int/Topo IB signature motif; other site
360102011164	CpxP component of the bacterial Cpx-two-component system and related proteins; Region: CpxP_like; cd09916
360102011165	dimer interface [polypeptide binding]; other site
360102011166	DNA-binding transcriptional regulator CpxR; Provisional; Region: PRK10955
360102011167	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102011168	active site
360102011169	phosphorylation site [posttranslational modification]
360102011170	intermolecular recognition site; other site
360102011171	dimerization interface [polypeptide binding]; other site
360102011172	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102011173	DNA binding site [nucleotide binding]
360102011174	two-component sensor protein; Provisional; Region: cpxA; PRK09470
360102011175	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain; Region: HAMP; smart00304
360102011176	dimerization interface [polypeptide binding]; other site
360102011177	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102011178	dimer interface [polypeptide binding]; other site
360102011179	phosphorylation site [posttranslational modification]
360102011180	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102011181	ATP binding site [chemical binding]; other site
360102011182	Mg2+ binding site [ion binding]; other site
360102011183	G-X-G motif; other site
360102011184	bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional; Region: PRK15435
360102011185	Metal binding domain of Ada; Region: Ada_Zn_binding; pfam02805
360102011186	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102011187	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102011188	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; Region: Methyltransf_1N; pfam02870
360102011189	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
360102011190	DNA binding site [nucleotide binding]
360102011191	active site
360102011192	putative rRNA methylase; Provisional; Region: PRK10358
360102011193	serine acetyltransferase; Provisional; Region: cysE; PRK11132
360102011194	Serine acetyltransferase, N-terminal; Region: SATase_N; pfam06426
360102011195	Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of...; Region: LbH_SAT; cd03354
360102011196	trimer interface [polypeptide binding]; other site
360102011197	active site
360102011198	substrate binding site [chemical binding]; other site
360102011199	CoA binding site [chemical binding]; other site
360102011200	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated; Region: gpsA; PRK00094
360102011201	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
360102011202	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; Region: NAD_Gly3P_dh_C; pfam07479
360102011203	Preprotein translocase subunit SecB. SecB is a cytoplasmic component of the multisubunit membrane-bound enzyme termed Sec protein translocase, which is the main constituent of the General Secretory (type II) Pathway involved in translocation of nascent...; Region: Translocase_SecB; cd00557
360102011204	SecA binding site; other site
360102011205	Preprotein binding site; other site
360102011206	Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the...; Region: GRX_GRXb_1_3_like; cd03418
360102011207	GSH binding site [chemical binding]; other site
360102011208	catalytic residues [active]
360102011209	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
360102011210	active site residue [active]
360102011211	phosphoglyceromutase; Provisional; Region: PRK05434
360102011212	Phosphoglyceromutase [Carbohydrate transport and metabolism]; Region: GpmI; COG0696
360102011213	AmiB activator; Provisional; Region: PRK11637
360102011214	Peptidase family M23; Region: Peptidase_M23; pfam01551
360102011215	Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; Region: CE4_DAC2; cd10936
360102011216	NodB motif; other site
360102011217	putative active site [active]
360102011218	Zn binding site [ion binding]; other site
360102011219	Divergent polysaccharide deacetylase; Region: Polysacc_deac_2; cl17042
360102011220	L-threonine 3-dehydrogenase; Validated; Region: tdh; PRK05396
360102011221	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl16912
360102011222	NAD(P) binding site [chemical binding]; other site
360102011223	pyridoxal phosphate-dependent acyltransferase, putative; Region: gly_Cac_T_rel; TIGR01825
360102011224	KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS); Region: KBL_like; cd06454
360102011225	substrate-cofactor binding pocket; other site
360102011226	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102011227	catalytic residue [active]
360102011228	ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs; Region: ADP_GME_SDR_e; cd05248
360102011229	ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional; Region: rfaD; PRK11150
360102011230	NADP binding site [chemical binding]; other site
360102011231	homopentamer interface [polypeptide binding]; other site
360102011232	substrate binding site [chemical binding]; other site
360102011233	active site
360102011234	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
360102011235	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
360102011236	putative active site [active]
360102011237	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
360102011238	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
360102011239	putative active site [active]
360102011240	3-deoxy-D-manno-octulosonic-acid transferase; Reviewed; Region: PRK05749
360102011241	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); Region: Glycos_transf_N; pfam04413
360102011242	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
360102011243	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
360102011244	UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide; Region: Beta4Glucosyltransferase; cd02511
360102011245	putative metal binding site; other site
360102011246	phosphopantetheine adenylyltransferase; Provisional; Region: coaD; PRK00168
360102011247	Phosphopantetheine adenylyltransferase; Region: PPAT; cd02163
360102011248	active site
360102011249	(T/H)XGH motif; other site
360102011250	formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated; Region: PRK01103
360102011251	N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases; Region: EcFpg-like_N; cd08966
360102011252	DNA binding site [nucleotide binding]
360102011253	catalytic residue [active]
360102011254	H2TH interface [polypeptide binding]; other site
360102011255	putative catalytic residues [active]
360102011256	turnover-facilitating residue; other site
360102011257	intercalation triad [nucleotide binding]; other site
360102011258	8OG recognition residue [nucleotide binding]; other site
360102011259	putative reading head residues; other site
360102011260	Formamidopyrimidine-DNA glycosylase H2TH domain; Region: H2TH; pfam06831
360102011261	Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827
360102011262	50S ribosomal protein L33; Validated; Region: rpmG; PRK00595
360102011263	50S ribosomal protein L28; Reviewed; Region: rpmB; PRK00359
360102011264	hypothetical protein; Reviewed; Region: PRK00024
360102011265	Mov34/MPN/PAD-1 family; Region: MPN_DUF2466; cd08071
360102011266	MPN+ (JAMM) motif; other site
360102011267	Zinc-binding site [ion binding]; other site
360102011268	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated; Region: PRK05579
360102011269	Flavoprotein; Region: Flavoprotein; pfam02441
360102011270	DNA / pantothenate metabolism flavoprotein; Region: DFP; pfam04127
360102011271	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
360102011272	trimer interface [polypeptide binding]; other site
360102011273	active site
360102011274	division inhibitor protein; Provisional; Region: slmA; PRK09480
360102011275	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
360102011276	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
360102011277	active site
360102011278	ribonuclease PH; Reviewed; Region: rph; PRK00173
360102011279	Ribonuclease PH; Region: RNase_PH_bact; cd11362
360102011280	hexamer interface [polypeptide binding]; other site
360102011281	active site
360102011282	hypothetical protein; Provisional; Region: PRK11820
360102011283	YicC-like family, N-terminal region; Region: YicC_N; pfam03755
360102011284	Domain of unknown function (DUF1732); Region: DUF1732; pfam08340
360102011285	Predicted membrane protein [Function unknown]; Region: COG2860
360102011286	UPF0126 domain; Region: UPF0126; pfam03458
360102011287	UPF0126 domain; Region: UPF0126; pfam03458
360102011288	NAD-dependent DNA ligase LigB; Reviewed; Region: ligB; PRK08097
360102011289	NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cd00114
360102011290	nucleotide binding pocket [chemical binding]; other site
360102011291	K-X-D-G motif; other site
360102011292	catalytic site [active]
360102011293	NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120
360102011294	Guanylate kinase [Nucleotide transport and metabolism]; Region: Gmk; COG0194
360102011295	Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine...; Region: GMPK; cd00071
360102011296	catalytic site [active]
360102011297	G-X2-G-X-G-K; other site
360102011298	DNA-directed RNA polymerase subunit omega; Reviewed; Region: rpoZ; PRK00392
360102011299	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional; Region: PRK11092
360102011300	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
360102011301	Zn2+ binding site [ion binding]; other site
360102011302	Mg2+ binding site [ion binding]; other site
360102011303	Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399
360102011304	synthetase active site [active]
360102011305	NTP binding site [chemical binding]; other site
360102011306	metal binding site [ion binding]; metal-binding site
360102011307	TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after...; Region: TGS_RelA_SpoT; cd01668
360102011308	ACT  domain found C-terminal of the RelA/SpoT domains; Region: ACT_RelA-SpoT; cd04876
360102011309	tRNA guanosine-2'-O-methyltransferase; Provisional; Region: PRK11081
360102011310	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
360102011311	SpoU, rRNA methylase, C-terminal; Region: SpoU_methylas_C; pfam12105
360102011312	ATP-dependent DNA helicase RecG; Provisional; Region: PRK10917
360102011313	RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a...; Region: RecG_wedge_OBF; cd04488
360102011314	generic binding surface II; other site
360102011315	ssDNA binding site; other site
360102011316	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
360102011317	ATP binding site [chemical binding]; other site
360102011318	putative Mg++ binding site [ion binding]; other site
360102011319	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102011320	nucleotide binding region [chemical binding]; other site
360102011321	ATP-binding site [chemical binding]; other site
360102011322	sodium--glutamate symport carrier (gltS); Region: gltS; TIGR00210
360102011323	Xanthine/uracil permeases [Nucleotide transport and metabolism]; Region: UraA; COG2233
360102011324	AsmA family; Region: AsmA; pfam05170
360102011325	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
360102011326	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
360102011327	Coenzyme A binding pocket [chemical binding]; other site
360102011328	Putative thioesterase (yiiD_Cterm); Region: YiiD_Cterm; pfam09500
360102011329	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102011330	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102011331	DNA-binding interface [nucleotide binding]; DNA binding site
360102011332	Integrase core domain; Region: rve; pfam00665
360102011333	transposase/IS protein; Provisional; Region: PRK09183
360102011334	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102011335	Walker A motif; other site
360102011336	ATP binding site [chemical binding]; other site
360102011337	Walker B motif; other site
360102011338	D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not...; Region: Dtyr_deacylase; cd00563
360102011339	putative active site [active]
360102011340	dimerization interface [polypeptide binding]; other site
360102011341	putative tRNAtyr binding site [nucleotide binding]; other site
360102011342	hypothetical protein; Reviewed; Region: PRK01637
360102011343	haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Region: HAD-SF-IA-v3; TIGR01509
360102011344	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102011345	motif II; other site
360102011346	Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]; Region: TypA; COG1217
360102011347	Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases; Region: TypA_BipA; cd01891
360102011348	G1 box; other site
360102011349	putative GEF interaction site [polypeptide binding]; other site
360102011350	GTP/Mg2+ binding site [chemical binding]; other site
360102011351	Switch I region; other site
360102011352	G2 box; other site
360102011353	G3 box; other site
360102011354	Switch II region; other site
360102011355	G4 box; other site
360102011356	G5 box; other site
360102011357	BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu.  BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a...; Region: BipA_TypA_II; cd03691
360102011358	BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants.  BipA is a highly...; Region: BipA_TypA_C; cd03710
360102011359	glutamine synthetase; Provisional; Region: glnA; PRK09469
360102011360	Glutamine synthetase, beta-Grasp domain; Region: Gln-synt_N; pfam03951
360102011361	Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120
360102011362	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102011363	nitrogen regulation protein NR(II); Provisional; Region: glnL; PRK11073
360102011364	His Kinase A (phospho-acceptor) domain; Region: HisKA; pfam00512
360102011365	dimer interface [polypeptide binding]; other site
360102011366	phosphorylation site [posttranslational modification]
360102011367	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102011368	ATP binding site [chemical binding]; other site
360102011369	Mg2+ binding site [ion binding]; other site
360102011370	G-X-G motif; other site
360102011371	nitrogen regulation protein NR(I); Provisional; Region: glnG; PRK10923
360102011372	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102011373	active site
360102011374	phosphorylation site [posttranslational modification]
360102011375	intermolecular recognition site; other site
360102011376	dimerization interface [polypeptide binding]; other site
360102011377	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102011378	Walker A motif; other site
360102011379	ATP binding site [chemical binding]; other site
360102011380	Walker B motif; other site
360102011381	arginine finger; other site
360102011382	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
360102011383	coproporphyrinogen III oxidase; Provisional; Region: PRK09249
360102011384	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102011385	FeS/SAM binding site; other site
360102011386	HemN C-terminal domain; Region: HemN_C; pfam06969
360102011387	Der GTPase activator; Provisional; Region: PRK05244
360102011388	YihA (EngB) GTPase family; Region: YihA_EngB; cd01876
360102011389	G1 box; other site
360102011390	GTP/Mg2+ binding site [chemical binding]; other site
360102011391	Switch I region; other site
360102011392	G2 box; other site
360102011393	G3 box; other site
360102011394	Switch II region; other site
360102011395	G4 box; other site
360102011396	G5 box; other site
360102011397	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102011398	DNA polymerase I; Provisional; Region: PRK05755
360102011399	PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859
360102011400	active site
360102011401	metal binding site 1 [ion binding]; metal-binding site
360102011402	putative 5' ssDNA interaction site; other site
360102011403	metal binding site 3; metal-binding site
360102011404	metal binding site 2 [ion binding]; metal-binding site
360102011405	H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898
360102011406	putative DNA binding site [nucleotide binding]; other site
360102011407	putative metal binding site [ion binding]; other site
360102011408	DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139
360102011409	active site
360102011410	catalytic site [active]
360102011411	substrate binding site [chemical binding]; other site
360102011412	Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication; Region: DNA_pol_A_pol_I_C; cd08637
360102011413	active site
360102011414	DNA binding site [nucleotide binding]
360102011415	catalytic site [active]
360102011416	DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol...; Region: DsbA_DsbA; cd03019
360102011417	DSBA-like thioredoxin domain; Region: DSBA; pfam01323
360102011418	catalytic residues [active]
360102011419	hinge region; other site
360102011420	alpha helical domain; other site
360102011421	Putative homoserine kinase type II (protein kinase fold) [General function prediction only]; Region: COG2334
360102011422	serine/threonine protein kinase; Provisional; Region: PRK11768
360102011423	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3084
360102011424	molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed; Region: mobA; PRK00317
360102011425	MobA catalyzes the formation of molybdopterin guanine dinucleotide; Region: MobA; cd02503
360102011426	GTP binding site; other site
360102011427	Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa; Region: MobB; cd03116
360102011428	Walker A motif; other site
360102011429	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
360102011430	MULE transposase domain; Region: MULE; pfam10551
360102011431	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102011432	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102011433	DNA-binding interface [nucleotide binding]; DNA binding site
360102011434	Integrase core domain; Region: rve; pfam00665
360102011435	transposase/IS protein; Provisional; Region: PRK09183
360102011436	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102011437	Walker A motif; other site
360102011438	ATP binding site [chemical binding]; other site
360102011439	Walker B motif; other site
360102011440	The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic...; Region: MutT_pyrophosphohydrolase; cd03425
360102011441	active site
360102011442	8-oxo-dGMP binding site [chemical binding]; other site
360102011443	nudix motif; other site
360102011444	metal binding site [ion binding]; metal-binding site
360102011445	preprotein translocase subunit SecA; Reviewed; Region: PRK12904
360102011446	SecA preprotein cross-linking domain; Region: SecA_PP_bind; smart00958
360102011447	SEC-C motif; Region: SEC-C; pfam02810
360102011448	SecA regulator SecM; Provisional; Region: PRK02943
360102011449	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4701
360102011450	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed; Region: lpxC; PRK13186
360102011451	UDP-3-O-acyl N-acetylglycosamine deacetylase; Region: LpxC; pfam03331
360102011452	cell division protein FtsZ; Validated; Region: PRK09330
360102011453	FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes.  FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at...; Region: FtsZ_type1; cd02201
360102011454	nucleotide binding site [chemical binding]; other site
360102011455	SulA interaction site; other site
360102011456	cell division protein FtsA; Reviewed; Region: ftsA; PRK09472
360102011457	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
360102011458	Cell division protein FtsA; Region: FtsA; pfam14450
360102011459	cell division protein FtsQ; Provisional; Region: PRK10775
360102011460	POTRA domain, FtsQ-type; Region: POTRA_1; pfam08478
360102011461	Cell division protein FtsQ; Region: FtsQ; pfam03799
360102011462	D-alanine--D-alanine ligase; Reviewed; Region: ddl; PRK01372
360102011463	D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820
360102011464	D-ala D-ala ligase C-terminus; Region: Dala_Dala_lig_C; pfam07478
360102011465	UDP-N-acetylmuramate--L-alanine ligase; Provisional; Region: murC; PRK00421
360102011466	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
360102011467	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
360102011468	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
360102011469	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional; Region: murG; PRK00726
360102011470	MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide...; Region: GT1_MurG; cd03785
360102011471	active site
360102011472	homodimer interface [polypeptide binding]; other site
360102011473	cell division protein FtsW; Provisional; Region: PRK10774
360102011474	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional; Region: murD; PRK03806
360102011475	CRISPR/Cas system-associated protein Cas1; Region: Cas1_I-II-III; cl00656
360102011476	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
360102011477	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
360102011478	phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional; Region: mraY; PRK00108
360102011479	Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of...; Region: GT_MraY; cd06852
360102011480	Mg++ binding site [ion binding]; other site
360102011481	putative catalytic motif [active]
360102011482	putative substrate binding site [chemical binding]; other site
360102011483	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed; Region: murF; PRK10773
360102011484	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
360102011485	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
360102011486	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
360102011487	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional; Region: murE; PRK00139
360102011488	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
360102011489	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
360102011490	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
360102011491	peptidoglycan synthase FtsI; Provisional; Region: PRK15105
360102011492	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
360102011493	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
360102011494	cell division protein FtsL; Provisional; Region: PRK10772
360102011495	MraW methylase family; Region: Methyltransf_5; pfam01795
360102011496	16S rRNA m(4)C1402 methyltranserfase; Provisional; Region: PRK00050
360102011497	cell division protein MraZ; Reviewed; Region: PRK00326
360102011498	MraZ protein; Region: MraZ; pfam02381
360102011499	MraZ protein; Region: MraZ; pfam02381
360102011500	Protein of unknown function (DUF1144); Region: DUF1144; pfam06610
360102011501	DNA-binding transcriptional regulator FruR; Provisional; Region: PRK11303
360102011502	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102011503	DNA binding site [nucleotide binding]
360102011504	domain linker motif; other site
360102011505	Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs; Region: PBP1_FruR; cd06274
360102011506	dimerization interface [polypeptide binding]; other site
360102011507	ligand binding site [chemical binding]; other site
360102011508	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102011509	acetolactate synthase 3 regulatory subunit; Reviewed; Region: ilvH; PRK11895
360102011510	N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); Region: ACT_AHAS; cd04878
360102011511	putative valine binding site [chemical binding]; other site
360102011512	dimer interface [polypeptide binding]; other site
360102011513	Small subunit of acetolactate synthase; Region: ALS_ss_C; pfam10369
360102011514	acetolactate synthase 3 catalytic subunit; Validated; Region: PRK07979
360102011515	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
360102011516	PYR/PP interface [polypeptide binding]; other site
360102011517	dimer interface [polypeptide binding]; other site
360102011518	TPP binding site [chemical binding]; other site
360102011519	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
360102011520	Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the...; Region: TPP_AHAS; cd02015
360102011521	TPP-binding site [chemical binding]; other site
360102011522	dimer interface [polypeptide binding]; other site
360102011523	Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]; Region: FAA1; COG1022
360102011524	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
360102011525	Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases; Region: VL_LC_FACS_like; cd05907
360102011526	acyl-activating enzyme (AAE) consensus motif; other site
360102011527	acyl-activating enzyme (AAE) consensus motif; other site
360102011528	putative AMP binding site [chemical binding]; other site
360102011529	putative active site [active]
360102011530	putative CoA binding site [chemical binding]; other site
360102011531	leucine transcriptional activator; Reviewed; Region: leuO; PRK09508
360102011532	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102011533	The C-terminal substrate binding domain of LysR-type transcriptional regulator LeuO, an activator of leucine synthesis operon, contains the type 2 periplasmic binding fold; Region: PBP2_LeuO; cd08466
360102011534	putative substrate binding pocket [chemical binding]; other site
360102011535	putative dimerization interface [polypeptide binding]; other site
360102011536	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102011537	2-isopropylmalate synthase; Validated; Region: PRK00915
360102011538	2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; Region: DRE_TIM_IPMS; cd07940
360102011539	active site
360102011540	catalytic residues [active]
360102011541	metal binding site [ion binding]; metal-binding site
360102011542	LeuA allosteric (dimerisation) domain; Region: LeuA_dimer; pfam08502
360102011543	3-isopropylmalate dehydrogenase; Provisional; Region: PRK00772
360102011544	tartrate dehydrogenase; Region: TTC; TIGR02089
360102011545	3-isopropylmalate dehydratase large subunit; Reviewed; Region: PRK00402
360102011546	3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; Region: IPMI; cd01583
360102011547	substrate binding site [chemical binding]; other site
360102011548	ligand binding site [chemical binding]; other site
360102011549	isopropylmalate isomerase small subunit; Provisional; Region: leuD; PRK01641
360102011550	Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate...; Region: IPMI_Swivel; cd01577
360102011551	substrate binding site [chemical binding]; other site
360102011552	sugar efflux transporter; Region: 2A0120; TIGR00899
360102011553	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102011554	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102011555	DNA-binding interface [nucleotide binding]; DNA binding site
360102011556	Integrase core domain; Region: rve; pfam00665
360102011557	transposase/IS protein; Provisional; Region: PRK09183
360102011558	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102011559	Walker A motif; other site
360102011560	ATP binding site [chemical binding]; other site
360102011561	Walker B motif; other site
360102011562	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102011563	putative substrate translocation pore; other site
360102011564	transcriptional regulator SgrR; Provisional; Region: PRK13626
360102011565	Sugar transport-related sRNA regulator N-term; Region: SgrR_N; pfam12793
360102011566	The C-terminal solute-binding domain of DNA-binding transcriptional regulator SgrR is related to the ABC-type oligopeptide-binding proteins and contains the type 2 periplasmic-binding fold; Region: PBP2_SgrR_like; cd08507
360102011567	thiamine transporter substrate binding subunit; Provisional; Region: tbpA; PRK11205
360102011568	ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]; Region: TbpA; COG4143
360102011569	thiamine transporter membrane protein; Reviewed; Region: thiP; PRK09433
360102011570	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102011571	dimer interface [polypeptide binding]; other site
360102011572	conserved gate region; other site
360102011573	putative PBP binding loops; other site
360102011574	ABC-ATPase subunit interface; other site
360102011575	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102011576	dimer interface [polypeptide binding]; other site
360102011577	conserved gate region; other site
360102011578	putative PBP binding loops; other site
360102011579	ABC-ATPase subunit interface; other site
360102011580	thiamine transporter ATP-binding subunit; Provisional; Region: thiQ; PRK10771
360102011581	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102011582	Walker A/P-loop; other site
360102011583	ATP binding site [chemical binding]; other site
360102011584	Q-loop/lid; other site
360102011585	ABC transporter signature motif; other site
360102011586	Walker B; other site
360102011587	D-loop; other site
360102011588	H-loop/switch region; other site
360102011589	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
360102011590	SNARE associated Golgi protein; Region: SNARE_assoc; pfam09335
360102011591	DNA polymerase II; Reviewed; Region: PRK05762
360102011592	DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases; Region: DNA_polB_II_exo; cd05784
360102011593	active site
360102011594	catalytic site [active]
360102011595	substrate binding site [chemical binding]; other site
360102011596	DNA polymerase type-II subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as...; Region: POLBc_Pol_II; cd05537
360102011597	active site
360102011598	metal-binding site
360102011599	ATP-dependent helicase HepA; Validated; Region: PRK04914
360102011600	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
360102011601	ATP binding site [chemical binding]; other site
360102011602	putative Mg++ binding site [ion binding]; other site
360102011603	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
360102011604	nucleotide binding region [chemical binding]; other site
360102011605	ATP-binding site [chemical binding]; other site
360102011606	type VI secretion protein IcmF; Region: VI_IcmF; TIGR03348
360102011607	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cd00882
360102011608	G1 box; other site
360102011609	GTP/Mg2+ binding site [chemical binding]; other site
360102011610	G2 box; other site
360102011611	G3 box; other site
360102011612	Switch II region; other site
360102011613	G4 box; other site
360102011614	Intracellular multiplication and human macrophage-killing; Region: IcmF-related; pfam06761
360102011615	Protein of unknown function (DUF1215); Region: DUF1215; pfam06744
360102011616	hypothetical protein; Provisional; Region: PRK07034
360102011617	Type VI protein secretion system component VasF [Intracellular    trafficking, secretion, and vesicular transport]; Region: COG3455
360102011618	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
360102011619	ligand binding site [chemical binding]; other site
360102011620	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3522
360102011621	Bacterial protein of unknown function (DUF876); Region: DUF876; pfam05936
360102011622	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3521
360102011623	Domain of unknown function (DUF4150); Region: DUF4150; pfam13665
360102011624	Protein of unknown function (DUF3540); Region: DUF3540; pfam12059
360102011625	Pentapeptide repeats containing protein [Function unknown]; Region: COG1357
360102011626	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
360102011627	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
360102011628	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
360102011629	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
360102011630	Uncharacterized protein conserved in bacteria (DUF2169); Region: DUF2169; cl02212
360102011631	Pentapeptide repeats containing protein [Function unknown]; Region: COG1357
360102011632	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
360102011633	Uncharacterized protein conserved in bacteria (DUF2169); Region: DUF2169; cl02212
360102011634	Rhs element Vgr protein; Region: vgr_GE; TIGR01646
360102011635	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
360102011636	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
360102011637	type VI secretion ATPase, ClpV1 family; Region: VI_ClpV1; TIGR03345
360102011638	Clp amino terminal domain; Region: Clp_N; pfam02861
360102011639	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102011640	Walker A motif; other site
360102011641	ATP binding site [chemical binding]; other site
360102011642	Walker B motif; other site
360102011643	arginine finger; other site
360102011644	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102011645	Walker A motif; other site
360102011646	ATP binding site [chemical binding]; other site
360102011647	Walker B motif; other site
360102011648	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
360102011649	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3520
360102011650	Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3519
360102011651	Bacterial protein of unknown function (DUF879); Region: DUF879; pfam05947
360102011652	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3518
360102011653	Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion,    and vesicular transport]; Region: Hcp; COG3157
360102011654	Protein of unknown function (DUF877); Region: DUF877; pfam05943
360102011655	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3517; cl05484
360102011656	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102011657	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102011658	DNA-binding interface [nucleotide binding]; DNA binding site
360102011659	Integrase core domain; Region: rve; pfam00665
360102011660	transposase/IS protein; Provisional; Region: PRK09183
360102011661	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102011662	Walker A motif; other site
360102011663	ATP binding site [chemical binding]; other site
360102011664	Walker B motif; other site
360102011665	insertion element IS2 transposase InsD; Provisional; Region: PRK14702
360102011666	HTH-like domain; Region: HTH_21; pfam13276
360102011667	Integrase core domain; Region: rve; pfam00665
360102011668	Integrase core domain; Region: rve_3; pfam13683
360102011669	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102011670	DNA-binding interface [nucleotide binding]; DNA binding site
360102011671	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional; Region: purH; PRK00881
360102011672	Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal  ATIC formylase domain that formylates...; Region: IMPCH; cd01421
360102011673	purine monophosphate binding site [chemical binding]; other site
360102011674	dimer interface [polypeptide binding]; other site
360102011675	putative catalytic residues [active]
360102011676	AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas; smart00798
360102011677	AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas; cl03362
360102011678	phosphoribosylamine--glycine ligase; Provisional; Region: PRK00885
360102011679	Phosphoribosylglycinamide synthetase, N domain; Region: GARS_N; pfam02844
360102011680	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Region: GARS_A; pfam01071
360102011681	Phosphoribosylglycinamide synthetase, C domain; Region: GARS_C; pfam02843
360102011682	Protein of unknown function (DUF1481); Region: DUF1481; pfam07356
360102011683	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
360102011684	IHF dimer interface [polypeptide binding]; other site
360102011685	IHF - DNA interface [nucleotide binding]; other site
360102011686	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3068
360102011687	Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases; Region: Endonuclease_V; cd06559
360102011688	Active_site [active]
360102011689	Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction...; Region: URO-D; cd00717
360102011690	substrate binding site [chemical binding]; other site
360102011691	active site
360102011692	NADH pyrophosphatase; Reviewed; Region: nudC; PRK00241
360102011693	NADH pyrophosphatase-like rudimentary NUDIX domain; Region: NUDIX-like; pfam09296
360102011694	NADH pyrophosphatase zinc ribbon domain; Region: zf-NADH-PPase; pfam09297
360102011695	NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for...; Region: NADH_pyrophosphatase; cd03429
360102011696	putative NADH binding site [chemical binding]; other site
360102011697	putative active site [active]
360102011698	nudix motif; other site
360102011699	putative metal binding site [ion binding]; other site
360102011700	Regulator of sigma D [Transcription]; Region: Rsd; COG3160
360102011701	thiamine biosynthesis protein ThiC; Provisional; Region: PRK09284
360102011702	ThiC-associated domain; Region: ThiC-associated; pfam13667
360102011703	Thiamine biosynthesis protein ThiC [Coenzyme metabolism]; Region: ThiC; COG0422
360102011704	Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-; Region: TMP_TenI; cd00564
360102011705	thiamine phosphate binding site [chemical binding]; other site
360102011706	active site
360102011707	pyrophosphate binding site [ion binding]; other site
360102011708	molybdopterin biosynthesis protein MoeB; Provisional; Region: PRK05690
360102011709	ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD...; Region: ThiF_MoeB_HesA_family; cd00757
360102011710	ATP binding site [chemical binding]; other site
360102011711	substrate interface [chemical binding]; other site
360102011712	ThiaminS ubiquitin-like sulfur carrier protein; Region: ThiS; cd00565
360102011713	thiS-thiF/thiG interaction site; other site
360102011714	Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728
360102011715	ThiS interaction site; other site
360102011716	putative active site [active]
360102011717	tetramer interface [polypeptide binding]; other site
360102011718	thiamine biosynthesis protein ThiH; Reviewed; Region: thiH; PRK09240
360102011719	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102011720	FeS/SAM binding site; other site
360102011721	Biotin and Thiamin Synthesis associated domain; Region: BATS; pfam06968
360102011722	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102011723	RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997
360102011724	DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; Region: RpoC; COG0086
360102011725	RNA polymerase I subunit A N-terminus; Region: RPOLA_N; smart00663
360102011726	RNA polymerase Rpb1, domain 3; Region: RNA_pol_Rpb1_3; pfam04983
360102011727	RNA polymerase Rpb1, domain 4; Region: RNA_pol_Rpb1_4; pfam05000
360102011728	RNA polymerase Rpb1, domain 5; Region: RNA_pol_Rpb1_5; pfam04998
360102011729	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
360102011730	Rpb1 - Rpb6 interaction site [polypeptide binding]; other site
360102011731	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
360102011732	Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655
360102011733	DNA binding site [nucleotide binding]
360102011734	Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site
360102011735	DNA-directed RNA polymerase subunit beta; Reviewed; Region: rpoB; PRK00405
360102011736	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl17585
360102011737	RNA polymerase Rpb2, domain 2; Region: RNA_pol_Rpb2_2; pfam04561
360102011738	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
360102011739	RNA polymerase Rpb2, domain 6; Region: RNA_pol_Rpb2_6; pfam00562
360102011740	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
360102011741	RPB3 interaction site [polypeptide binding]; other site
360102011742	RPB1 interaction site [polypeptide binding]; other site
360102011743	RPB11 interaction site [polypeptide binding]; other site
360102011744	RPB10 interaction site [polypeptide binding]; other site
360102011745	Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387
360102011746	core dimer interface [polypeptide binding]; other site
360102011747	peripheral dimer interface [polypeptide binding]; other site
360102011748	L10 interface [polypeptide binding]; other site
360102011749	L11 interface [polypeptide binding]; other site
360102011750	putative EF-Tu interaction site [polypeptide binding]; other site
360102011751	putative EF-G interaction site [polypeptide binding]; other site
360102011752	Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein...; Region: Ribosomal_L10; cd05797
360102011753	23S rRNA interface [nucleotide binding]; other site
360102011754	Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site
360102011755	Ribosomal protein L1.  The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA.  In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds...; Region: Ribosomal_L1; cd00403
360102011756	mRNA/rRNA interface [nucleotide binding]; other site
360102011757	50S ribosomal protein L11; Validated; Region: rplK; PRK00140
360102011758	Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349
360102011759	23S rRNA interface [nucleotide binding]; other site
360102011760	L7/L12 interface [polypeptide binding]; other site
360102011761	putative thiostrepton binding site; other site
360102011762	L25 interface [polypeptide binding]; other site
360102011763	transcription antitermination protein NusG; Validated; Region: nusG; PRK05609
360102011764	Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891
360102011765	putative homodimer interface [polypeptide binding]; other site
360102011766	NusG contains an NGN domain at its N-terminus and KOW motif at its C-terminus; Region: KOW_NusG; cd06091
360102011767	heterodimer interface [polypeptide binding]; other site
360102011768	homodimer interface [polypeptide binding]; other site
360102011769	preprotein translocase subunit SecE; Reviewed; Region: secE; PRK05740
360102011770	elongation factor Tu; Reviewed; Region: PRK00049
360102011771	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
360102011772	G1 box; other site
360102011773	GEF interaction site [polypeptide binding]; other site
360102011774	GTP/Mg2+ binding site [chemical binding]; other site
360102011775	Switch I region; other site
360102011776	G2 box; other site
360102011777	G3 box; other site
360102011778	Switch II region; other site
360102011779	G4 box; other site
360102011780	G5 box; other site
360102011781	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
360102011782	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
360102011783	Antibiotic Binding Site [chemical binding]; other site
360102011784	3-oxoacyl-(acyl carrier protein) synthase II; Provisional; Region: PRK14691
360102011785	transposase/IS protein; Provisional; Region: PRK09183
360102011786	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102011787	Walker A motif; other site
360102011788	ATP binding site [chemical binding]; other site
360102011789	Walker B motif; other site
360102011790	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102011791	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102011792	DNA-binding interface [nucleotide binding]; DNA binding site
360102011793	Integrase core domain; Region: rve; pfam00665
360102011794	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
360102011795	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
360102011796	Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; pfam02894
360102011797	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
360102011798	Helix-turn-helix domain; Region: HTH_18; pfam12833
360102011799	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102011800	ABC-type ribose transport system, auxiliary component [Carbohydrate transport and metabolism]; Region: RbsD; COG1869
360102011801	Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides...; Region: ribokinase; cd01174
360102011802	substrate binding site [chemical binding]; other site
360102011803	dimer interface [polypeptide binding]; other site
360102011804	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
360102011805	ATP binding site [chemical binding]; other site
360102011806	2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family; Region: DeoC; cd00959
360102011807	intersubunit interface [polypeptide binding]; other site
360102011808	active site
360102011809	catalytic residue [active]
360102011810	NAD(P)H-dependent FMN reductase; Provisional; Region: PRK10569
360102011811	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
360102011812	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102011813	substrate binding pocket [chemical binding]; other site
360102011814	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
360102011815	membrane-bound complex binding site; other site
360102011816	hinge residues; other site
360102011817	alkanesulfonate monooxygenase; Provisional; Region: PRK00719
360102011818	Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin...; Region: Alkanesulfonate_monoxygenase; cd01094
360102011819	active site
360102011820	dimer interface [polypeptide binding]; other site
360102011821	non-prolyl cis peptide bond; other site
360102011822	insertion regions; other site
360102011823	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
360102011824	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102011825	dimer interface [polypeptide binding]; other site
360102011826	conserved gate region; other site
360102011827	putative PBP binding loops; other site
360102011828	ABC-ATPase subunit interface; other site
360102011829	aliphatic sulfonates transport ATP-binding subunit; Provisional; Region: ssuB; PRK11247
360102011830	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
360102011831	Walker A/P-loop; other site
360102011832	ATP binding site [chemical binding]; other site
360102011833	Q-loop/lid; other site
360102011834	ABC transporter signature motif; other site
360102011835	Walker B; other site
360102011836	D-loop; other site
360102011837	H-loop/switch region; other site
360102011838	DNA-damage-inducible protein J [DNA replication, recombination, and repair]; Region: RelB; COG3077
360102011839	Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]; Region: COG2252
360102011840	Na+/H+ antiporter, bacterial form; Region: a_cpa1; TIGR00831
360102011841	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482
360102011842	Bacterial lipid A biosynthesis acyltransferase; Region: Lip_A_acyltrans; pfam03279
360102011843	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984
360102011844	putative acyl-acceptor binding pocket; other site
360102011845	Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs; Region: PBP1_LsrB_Quorum_Sensing; cd06302
360102011846	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
360102011847	ligand binding site [chemical binding]; other site
360102011848	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
360102011849	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102011850	Walker A/P-loop; other site
360102011851	ATP binding site [chemical binding]; other site
360102011852	Q-loop/lid; other site
360102011853	ABC transporter signature motif; other site
360102011854	Walker B; other site
360102011855	D-loop; other site
360102011856	H-loop/switch region; other site
360102011857	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102011858	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102011859	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102011860	TM-ABC transporter signature motif; other site
360102011861	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102011862	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102011863	TM-ABC transporter signature motif; other site
360102011864	Ribulose kinase [Energy production and conversion]; Region: AraB; COG1069
360102011865	Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases; Region: FGGY_YpCarbK_like; cd07782
360102011866	N- and C-terminal domain interface [polypeptide binding]; other site
360102011867	active site
360102011868	MgATP binding site [chemical binding]; other site
360102011869	catalytic site [active]
360102011870	metal binding site [ion binding]; metal-binding site
360102011871	carbohydrate binding site [chemical binding]; other site
360102011872	putative homodimer interface [polypeptide binding]; other site
360102011873	KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose...; Region: SIS_Kpsf; cd05014
360102011874	putative active site [active]
360102011875	putative S-transferase; Provisional; Region: PRK11752
360102011876	GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources...; Region: GST_N_Ure2p_like; cd03048
360102011877	C-terminal domain interface [polypeptide binding]; other site
360102011878	GSH binding site (G-site) [chemical binding]; other site
360102011879	dimer interface [polypeptide binding]; other site
360102011880	C-terminal, alpha helical domain of Escherichia coli Yghu Glutathione S-transferases and related uncharacterized proteins; Region: GST_C_YghU_like; cd10292
360102011881	dimer interface [polypeptide binding]; other site
360102011882	N-terminal domain interface [polypeptide binding]; other site
360102011883	active site
360102011884	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4222
360102011885	DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]; Region: DjlA; COG1076
360102011886	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102011887	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
360102011888	DNA-binding site [nucleotide binding]; DNA binding site
360102011889	RNA-binding motif; other site
360102011890	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
360102011891	DNA-binding site [nucleotide binding]; DNA binding site
360102011892	RNA-binding motif; other site
360102011893	respiratory nitrate reductase, alpha subunit; Region: narG; TIGR01580
360102011894	Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]; Region: SlyB; COG3133
360102011895	Zn-dependent hydrolases, including glyoxylases [General function prediction only]; Region: GloB; COG0491
360102011896	3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084
360102011897	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
360102011898	Carboxymuconolactone decarboxylase family; Region: CMD; cl00460
360102011899	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102011900	metabolite-proton symporter; Region: 2A0106; TIGR00883
360102011901	putative substrate translocation pore; other site
360102011902	Transcriptional regulators [Transcription]; Region: GntR; COG1802
360102011903	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
360102011904	DNA-binding site [nucleotide binding]; DNA binding site
360102011905	FCD domain; Region: FCD; pfam07729
360102011906	Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair]; Region: Fis; COG2901
360102011907	global DNA-binding transcriptional dual regulator Fis; Provisional; Region: fis; PRK00430
360102011908	tRNA-dihydrouridine synthase B; Provisional; Region: PRK10415
360102011909	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
360102011910	FMN binding site [chemical binding]; other site
360102011911	active site
360102011912	catalytic residues [active]
360102011913	substrate binding site [chemical binding]; other site
360102011914	Ribosomal protein L11 methyltransferase (PrmA); Region: PrmA; pfam06325
360102011915	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
360102011916	Na(+)/pantothenate cotransporters: PanF of Escherichia coli and related proteins; solute binding domain; Region: SLC5sbd_PanF; cd10327
360102011917	Predicted symporter [General function prediction only]; Region: DhlC; COG4147
360102011918	Na binding site [ion binding]; other site
360102011919	hypothetical protein; Provisional; Region: PRK10633
360102011920	acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591
360102011921	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
360102011922	Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; pfam02786
360102011923	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; smart00878
360102011924	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated; Region: PRK06302
360102011925	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
360102011926	carboxyltransferase (CT) interaction site; other site
360102011927	biotinylation site [posttranslational modification]; other site
360102011928	Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway...; Region: DHQase_II; cd00466
360102011929	Dehydroquinase class II; Region: DHquinase_II; pfam01220
360102011930	active site
360102011931	trimer interface [polypeptide binding]; other site
360102011932	dimer interface [polypeptide binding]; other site
360102011933	putative sulfite oxidase subunit YedZ; Reviewed; Region: PRK05419
360102011934	TMAO/DMSO reductase; Reviewed; Region: PRK05363
360102011935	YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY; Region: YedY_like_Moco; cd02107
360102011936	Moco binding site; other site
360102011937	metal coordination site [ion binding]; other site
360102011938	Yhdh putative quinone oxidoreductases; Region: MDR_yhdh; cd08288
360102011939	putative quinone oxidoreductase, YhdH/YhfP family; Region: oxido_YhdH; TIGR02823
360102011940	NADP binding site [chemical binding]; other site
360102011941	dimer interface [polypeptide binding]; other site
360102011942	regulatory protein CsrD; Provisional; Region: PRK11059
360102011943	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
360102011944	metal binding site [ion binding]; metal-binding site
360102011945	active site
360102011946	I-site; other site
360102011947	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
360102011948	rod shape-determining protein MreB; Provisional; Region: PRK13927
360102011949	MreB and similar proteins; Region: MreB_like; cd10225
360102011950	nucleotide binding site [chemical binding]; other site
360102011951	Mg binding site [ion binding]; other site
360102011952	putative protofilament interaction site [polypeptide binding]; other site
360102011953	RodZ interaction site [polypeptide binding]; other site
360102011954	rod shape-determining protein MreC; Region: mreC; TIGR00219
360102011955	rod shape-determining protein MreC; Region: MreC; pfam04085
360102011956	rod shape-determining protein MreD; Provisional; Region: PRK11060
360102011957	Maf-like protein; Region: Maf; pfam02545
360102011958	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
360102011959	active site
360102011960	dimer interface [polypeptide binding]; other site
360102011961	ribonuclease G; Provisional; Region: PRK11712
360102011962	S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453
360102011963	homodimer interface [polypeptide binding]; other site
360102011964	oligonucleotide binding site [chemical binding]; other site
360102011965	hypothetical protein; Provisional; Region: PRK10899
360102011966	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
360102011967	nitrilase; Region: PLN02798
360102011968	Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases); Region: nit; cd07572
360102011969	putative active site [active]
360102011970	catalytic triad [active]
360102011971	dimer interface [polypeptide binding]; other site
360102011972	protease TldD; Provisional; Region: tldD; PRK10735
360102011973	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
360102011974	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
360102011975	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
360102011976	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
360102011977	Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr; Region: PTPc; cl00053
360102011978	active site
360102011979	catalytic residues [active]
360102011980	D-alanyl-D-alanine carboxypeptidase; Region: Peptidase_M15_4; pfam13539
360102011981	Salmonella virulence plasmid 65kDa B protein; Region: SpvB; pfam03534
360102011982	Family description; Region: VCBS; pfam13517
360102011983	Insecticide toxin TcdB middle/N-terminal region; Region: TcdB_toxin_midN; pfam12256
360102011984	Insecticide toxin TcdB middle/C-terminal region; Region: TcdB_toxin_midC; pfam12255
360102011985	Salmonella virulence plasmid 28.1kDa A protein; Region: VRP1; pfam03538
360102011986	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102011987	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102011988	transcriptional regulator; Provisional; Region: PRK10632
360102011989	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102011990	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
360102011991	putative effector binding pocket; other site
360102011992	dimerization interface [polypeptide binding]; other site
360102011993	efflux system membrane protein; Provisional; Region: PRK11594
360102011994	p-hydroxybenzoic acid efflux subunit AaeA; Provisional; Region: PRK10559
360102011995	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
360102011996	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102011997	p-hydroxybenzoic acid efflux subunit AaeB; Provisional; Region: PRK10631
360102011998	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
360102011999	Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like; Region: ALDH_F5_SSADH_GabD; cd07103
360102012000	tetramerization interface [polypeptide binding]; other site
360102012001	NAD(P) binding site [chemical binding]; other site
360102012002	catalytic residues [active]
360102012003	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
360102012004	Barnase, a member of the family of homologous microbial ribonucleases, catalyses the cleavage of single-stranded RNA via a two-step mechanism thought to be similar to that of pancreatic ribonuclease. The mechanism involves a transesterification to give a...; Region: barnase; cd00933
360102012005	active site
360102012006	Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell; Region: Barstar; cd05142
360102012007	RNAase interaction site [polypeptide binding]; other site
360102012008	hypothetical protein; Provisional; Region: PRK05255
360102012009	peptidase PmbA; Provisional; Region: PRK11040
360102012010	Soluble cytochrome b562 [Energy production and conversion]; Region: CybC; COG3783
360102012011	nucleoside diphosphate kinase regulator; Provisional; Region: PRK05753
360102012012	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
360102012013	trehalose-6-phosphate hydrolase; Provisional; Region: PRK10933
360102012014	Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins; Region: AmyAc_SI_OligoGlu_DGase; cd11333
360102012015	Ca binding site [ion binding]; other site
360102012016	active site
360102012017	catalytic site [active]
360102012018	PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional; Region: PRK11007
360102012019	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
360102012020	active site turn [active]
360102012021	phosphorylation site [posttranslational modification]
360102012022	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
360102012023	trehalose repressor; Provisional; Region: treR; PRK09492
360102012024	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102012025	DNA binding site [nucleotide binding]
360102012026	domain linker motif; other site
360102012027	Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_TreR_like; cd01542
360102012028	dimerization interface [polypeptide binding]; other site
360102012029	ligand binding site [chemical binding]; other site
360102012030	Periplasmic lysozyme inhibitor, I-type (PliI) and similar proteins; Region: PliI_like; cd09632
360102012031	dimer interface [polypeptide binding]; other site
360102012032	putative inhibitory loop; other site
360102012033	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
360102012034	homotrimer interaction site [polypeptide binding]; other site
360102012035	putative active site [active]
360102012036	aspartate carbamoyltransferase regulatory subunit; Reviewed; Region: PRK00893
360102012037	Aspartate carbamoyltransferase regulatory chain, allosteric domain; Region: PyrI; pfam01948
360102012038	Aspartate carbamoyltransferase regulatory chain, metal binding domain; Region: PyrI_C; pfam02748
360102012039	Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]; Region: PyrB; COG0540
360102012040	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
360102012041	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185
360102012042	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
360102012043	dimerization domain swap beta strand [polypeptide binding]; other site
360102012044	regulatory protein interface [polypeptide binding]; other site
360102012045	active site
360102012046	regulatory phosphorylation site [posttranslational modification]; other site
360102012047	P-loop ATPase protein family; Region: ATP_bind_2; pfam03668
360102012048	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
360102012049	active site
360102012050	phosphorylation site [posttranslational modification]
360102012051	RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal...; Region: RaiA; cd00552
360102012052	30S subunit binding site; other site
360102012053	RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal...; Region: RaiA; cd00552
360102012054	RNA polymerase factor sigma-54; Reviewed; Region: PRK05932
360102012055	Sigma-54 factor, Activator interacting domain (AID); Region: Sigma54_AID; pfam00309
360102012056	Sigma-54 factor, core binding domain; Region: Sigma54_CBD; pfam04963
360102012057	Sigma-54, DNA binding domain; Region: Sigma54_DBD; pfam04552
360102012058	lipopolysaccharide ABC transporter ATP-binding protein; Provisional; Region: PRK10895
360102012059	ATP-binding cassette component of YhbG transport system; Region: ABC_YhbG; cd03218
360102012060	Walker A/P-loop; other site
360102012061	ATP binding site [chemical binding]; other site
360102012062	Q-loop/lid; other site
360102012063	ABC transporter signature motif; other site
360102012064	Walker B; other site
360102012065	D-loop; other site
360102012066	H-loop/switch region; other site
360102012067	lipopolysaccharide transport periplasmic protein LptA; Provisional; Region: PRK10894
360102012068	lipopolysaccharide transport periplasmic protein LptA; Region: outer_YhbN_LptA; TIGR03002
360102012069	lipopolysaccharide exporter periplasmic protein; Provisional; Region: PRK10893
360102012070	Lipopolysaccharide-assembly, LptC-related; Region: LptC; pfam06835
360102012071	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional; Region: PRK09484
360102012072	HAD-superfamily hydrolase, subfamily IIIA; Region: HAD-SF-IIIA; TIGR01662
360102012073	D-arabinose 5-phosphate isomerase; Provisional; Region: PRK10892
360102012074	KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose...; Region: SIS_Kpsf; cd05014
360102012075	putative active site [active]
360102012076	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein.  These APIs catalyze the conversion of the pentose pathway...; Region: CBS_pair_KpsF_GutQ_assoc; cd04604
360102012077	putative calcium/sodium:proton antiporter; Provisional; Region: PRK10734
360102012078	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
360102012079	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
360102012080	putative ABC transporter ATP-binding protein YrbF; Provisional; Region: PRK11831
360102012081	ATP-binding cassette transport system involved in resistant to organic solvents; Region: ABC_Org_Solvent_Resistant; cd03261
360102012082	Walker A/P-loop; other site
360102012083	ATP binding site [chemical binding]; other site
360102012084	Q-loop/lid; other site
360102012085	ABC transporter signature motif; other site
360102012086	Walker B; other site
360102012087	D-loop; other site
360102012088	H-loop/switch region; other site
360102012089	ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2B; COG0767
360102012090	conserved hypothetical integral membrane protein; Region: TIGR00056
360102012091	ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463
360102012092	mce related protein; Region: MCE; pfam02470
360102012093	ABC transporter periplasmic binding protein MlaC; Provisional; Region: PRK15117
360102012094	Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Region: STAS_anti-anti-sigma_factors; cd07043
360102012095	anti sigma factor interaction site; other site
360102012096	regulatory phosphorylation site [posttranslational modification]; other site
360102012097	Predicted transcriptional regulator, BolA superfamily [Transcription]; Region: COG5007
360102012098	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Region: murA; TIGR01072
360102012099	UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555
360102012100	hinge; other site
360102012101	active site
360102012102	serine endoprotease; Provisional; Region: PRK10898
360102012103	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
360102012104	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
360102012105	protein binding site [polypeptide binding]; other site
360102012106	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102012107	serine endoprotease; Provisional; Region: PRK10139
360102012108	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
360102012109	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
360102012110	protein binding site [polypeptide binding]; other site
360102012111	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
360102012112	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3105
360102012113	hypothetical protein; Provisional; Region: PRK11677
360102012114	Predicted ATPase [General function prediction only]; Region: COG1485
360102012115	Ribosomal protein L13.  Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392
360102012116	23S rRNA interface [nucleotide binding]; other site
360102012117	L3 interface [polypeptide binding]; other site
360102012118	30S ribosomal protein S9; Reviewed; Region: rpsI; PRK00132
360102012119	stringent starvation protein A; Provisional; Region: sspA; PRK09481
360102012120	GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival...; Region: GST_N_SspA; cd03059
360102012121	C-terminal domain interface [polypeptide binding]; other site
360102012122	putative GSH binding site (G-site) [chemical binding]; other site
360102012123	dimer interface [polypeptide binding]; other site
360102012124	C-terminal, alpha helical domain of Stringent starvation protein A; Region: GST_C_SspA; cd03186
360102012125	dimer interface [polypeptide binding]; other site
360102012126	N-terminal domain interface [polypeptide binding]; other site
360102012127	ClpXP protease specificity-enhancing factor; Provisional; Region: PRK11798
360102012128	glutamate synthase small subunit family protein, proteobacterial; Region: gltD_gamma_fam; TIGR01318
360102012129	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
360102012130	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
360102012131	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
360102012132	glutamate synthase subunit alpha; Provisional; Region: gltB; PRK11750
360102012133	Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The...; Region: GltS; cd00713
360102012134	active site
360102012135	dimer interface [polypeptide binding]; other site
360102012136	Glutamate synthase central domain; Region: Glu_syn_central; pfam04898
360102012137	Glutamate synthase (GltS) FMN-binding domain.  GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast...; Region: GltS_FMN; cd02808
360102012138	active site
360102012139	FMN binding site [chemical binding]; other site
360102012140	substrate binding site [chemical binding]; other site
360102012141	3Fe-4S cluster binding site [ion binding]; other site
360102012142	gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the...; Region: gltB_C; cd00982
360102012143	domain interface; other site
360102012144	Predicted Fe-S oxidoreductase [General function prediction only]; Region: COG1242
360102012145	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102012146	FeS/SAM binding site; other site
360102012147	aerobic respiration control sensor protein ArcB; Provisional; Region: PRK11091
360102012148	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
360102012149	putative active site [active]
360102012150	heme pocket [chemical binding]; other site
360102012151	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102012152	dimer interface [polypeptide binding]; other site
360102012153	phosphorylation site [posttranslational modification]
360102012154	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102012155	ATP binding site [chemical binding]; other site
360102012156	Mg2+ binding site [ion binding]; other site
360102012157	G-X-G motif; other site
360102012158	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102012159	active site
360102012160	phosphorylation site [posttranslational modification]
360102012161	intermolecular recognition site; other site
360102012162	dimerization interface [polypeptide binding]; other site
360102012163	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
360102012164	putative binding surface; other site
360102012165	active site
360102012166	isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional; Region: PRK11780
360102012167	Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1; Region: GATase1_ES1; cd03133
360102012168	conserved cys residue [active]
360102012169	monofunctional biosynthetic peptidoglycan transglycosylase; Provisional; Region: mtgA; PRK00056
360102012170	Transglycosylase; Region: Transgly; cl17702
360102012171	outer membrane lipoprotein; Provisional; Region: PRK11023
360102012172	BON domain; Region: BON; pfam04972
360102012173	BON domain; Region: BON; cl02771
360102012174	Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006
360102012175	dimer interface [polypeptide binding]; other site
360102012176	active site
360102012177	hypothetical protein; Reviewed; Region: PRK12497
360102012178	Putative lipoprotein [General function prediction only]; Region: LppC; COG3107
360102012179	Periplasmic binding component of lipoprotein LppC, an immunodominant antigen; Region: PBP1_YraM_LppC_lipoprotein_like; cd06339
360102012180	putative ligand binding site [chemical binding]; other site
360102012181	SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional; Region: PRK14994
360102012182	Ribosomal RNA small subunit methyltransferase I, also known as rRNA (cytidine-2'-O-)-methyltransferase RsmI; Region: RsmI; cd11648
360102012183	putative SAM binding site [chemical binding]; other site
360102012184	putative homodimer interface [polypeptide binding]; other site
360102012185	Pirin-related protein [General function prediction only]; Region: COG1741
360102012186	Pirin; Region: Pirin; pfam02678
360102012187	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102012188	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11074
360102012189	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
360102012190	dimerization interface [polypeptide binding]; other site
360102012191	Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: ECM4; COG0435
360102012192	Glutathione S-transferase, N-terminal domain; Region: GST_N_2; pfam13409
360102012193	C-terminal, alpha helical domain of Class Omega-like Glutathione S-transferases; Region: GST_C_Omega_like; cd03190
360102012194	putative dimer interface [polypeptide binding]; other site
360102012195	N-terminal domain interface [polypeptide binding]; other site
360102012196	putative substrate binding pocket (H-site) [chemical binding]; other site
360102012197	transposase/IS protein; Provisional; Region: PRK09183
360102012198	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102012199	Walker A motif; other site
360102012200	ATP binding site [chemical binding]; other site
360102012201	Walker B motif; other site
360102012202	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102012203	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102012204	DNA-binding interface [nucleotide binding]; DNA binding site
360102012205	Integrase core domain; Region: rve; pfam00665
360102012206	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102012207	putative transposase OrfB; Reviewed; Region: PHA02517
360102012208	HTH-like domain; Region: HTH_21; pfam13276
360102012209	Integrase core domain; Region: rve; pfam00665
360102012210	Integrase core domain; Region: rve_2; pfam13333
360102012211	Enterobacterial putative membrane protein (DUF943); Region: DUF943; pfam06092
360102012212	glycerol-3-phosphate dehydrogenase; Reviewed; Region: glpD; PRK12266
360102012213	glycogen phosphorylase; Provisional; Region: PRK14986
360102012214	This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of...; Region: GT1_Glycogen_Phosphorylase; cd04300
360102012215	homodimer interface [polypeptide binding]; other site
360102012216	active site pocket [active]
360102012217	glycogen synthase; Provisional; Region: glgA; PRK00654
360102012218	This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family...; Region: GT1_Glycogen_synthase_DULL1_like; cd03791
360102012219	ADP-binding pocket [chemical binding]; other site
360102012220	homodimer interface [polypeptide binding]; other site
360102012221	glucose-1-phosphate adenylyltransferase; Provisional; Region: glgC; PRK00725
360102012222	ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch; Region: ADP_Glucose_PP; cd02508
360102012223	ligand binding site; other site
360102012224	oligomer interface; other site
360102012225	Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and...; Region: LbH_G1P_AT_C; cd04651
360102012226	sulfate 1 binding site; other site
360102012227	glycogen debranching enzyme; Provisional; Region: PRK03705
360102012228	N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase); Region: E_set_GDE_Isoamylase_N; cd02856
360102012229	Alpha amylase catalytic domain found in glycogen debranching enzymes; Region: AmyAc_Glg_debranch; cd11326
360102012230	active site
360102012231	catalytic site [active]
360102012232	glycogen branching enzyme; Provisional; Region: PRK05402
360102012233	N-terminal Early set domain associated with the catalytic domain of prokaryotic glycogen branching enzyme; Region: E_set_GBE_prok_N; cd02855
360102012234	Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme); Region: AmyAc_Glg_BE; cd11322
360102012235	active site
360102012236	catalytic site [active]
360102012237	Alpha amylase, C-terminal all-beta domain; Region: Alpha-amylase_C; pfam02806
360102012238	Putative regulator of cell autolysis [Signal transduction mechanisms]; Region: LytS; COG3275
360102012239	5TMR of 5TMR-LYT; Region: 5TM-5TMR_LYT; pfam07694
360102012240	Histidine kinase; Region: His_kinase; pfam06580
360102012241	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102012242	ATP binding site [chemical binding]; other site
360102012243	Mg2+ binding site [ion binding]; other site
360102012244	G-X-G motif; other site
360102012245	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
360102012246	Protein of unknown function (DUF3442); Region: DUF3442; pfam11924
360102012247	Bacterial Ig-like domain (group 1); Region: BID_1; smart00634
360102012248	Bacterial Ig-like domain (group 1); Region: BID_1; smart00634
360102012249	Bacterial Ig-like domain (group 1); Region: Big_1; cl17740
360102012250	Bacterial Ig-like domain (group 1); Region: Big_1; cl17740
360102012251	Bacterial Ig-like domain (group 1); Region: Big_1; cl17740
360102012252	Bacterial Ig-like domain (group 1); Region: BID_1; smart00634
360102012253	Bacterial Ig-like domain (group 1); Region: Big_1; cl17740
360102012254	Bacterial Ig-like domain (group 1); Region: Big_1; cl17740
360102012255	Bacterial Ig-like domain (group 1); Region: Big_1; cl17740
360102012256	Bacterial Ig-like domain (group 1); Region: Big_1; cl17740
360102012257	Bacterial Ig-like domain (group 1); Region: Big_1; cl17740
360102012258	Bacterial Ig-like domain (group 1); Region: BID_1; smart00634
360102012259	Bacterial Ig-like domain (group 1); Region: Big_1; cl17740
360102012260	aspartate-semialdehyde dehydrogenase; Reviewed; Region: PRK06598
360102012261	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
360102012262	putative antibiotic transporter; Provisional; Region: PRK10739
360102012263	Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits; Region: GntK; cd02021
360102012264	AAA domain; Region: AAA_33; pfam13671
360102012265	ATP-binding site [chemical binding]; other site
360102012266	Gluconate-6-phosphate binding site [chemical binding]; other site
360102012267	high-affinity gluconate transporter; Provisional; Region: PRK14984
360102012268	gluconate transporter; Region: gntP; TIGR00791
360102012269	gluconate operon transcriptional regulator; Provisional; Region: PRK14987
360102012270	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
360102012271	DNA binding site [nucleotide binding]
360102012272	domain linker motif; other site
360102012273	Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_GntR; cd01575
360102012274	putative ligand binding site [chemical binding]; other site
360102012275	putative dimerization interface [polypeptide binding]; other site
360102012276	Pirin-related protein [General function prediction only]; Region: COG1741
360102012277	Pirin; Region: Pirin; pfam02678
360102012278	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
360102012279	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102012280	active site
360102012281	phosphorylation site [posttranslational modification]
360102012282	intermolecular recognition site; other site
360102012283	dimerization interface [polypeptide binding]; other site
360102012284	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102012285	DNA binding site [nucleotide binding]
360102012286	Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular...; Region: adenosine_kinase; cd01168
360102012287	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
360102012288	substrate binding site [chemical binding]; other site
360102012289	ATP binding site [chemical binding]; other site
360102012290	Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1; Region: TBP_aldolase_IIB; cd00947
360102012291	intersubunit interface [polypeptide binding]; other site
360102012292	active site
360102012293	zinc binding site [ion binding]; other site
360102012294	Na+ binding site [ion binding]; other site
360102012295	ABC-type sugar transport system, auxiliary component [General function prediction only]; Region: COG3822
360102012296	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879
360102012297	Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Region: PBP1_ABC_sugar_binding_like_11; cd06321
360102012298	putative ligand binding site [chemical binding]; other site
360102012299	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102012300	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102012301	TM-ABC transporter signature motif; other site
360102012302	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
360102012303	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102012304	Walker A/P-loop; other site
360102012305	ATP binding site [chemical binding]; other site
360102012306	Q-loop/lid; other site
360102012307	ABC transporter signature motif; other site
360102012308	Walker B; other site
360102012309	D-loop; other site
360102012310	H-loop/switch region; other site
360102012311	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102012312	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: VicK; COG5002
360102012313	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
360102012314	dimerization interface [polypeptide binding]; other site
360102012315	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102012316	dimer interface [polypeptide binding]; other site
360102012317	phosphorylation site [posttranslational modification]
360102012318	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102012319	ATP binding site [chemical binding]; other site
360102012320	Mg2+ binding site [ion binding]; other site
360102012321	G-X-G motif; other site
360102012322	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
360102012323	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102012324	active site
360102012325	phosphorylation site [posttranslational modification]
360102012326	intermolecular recognition site; other site
360102012327	dimerization interface [polypeptide binding]; other site
360102012328	Predicted flavoproteins [General function prediction only]; Region: COG2081
360102012329	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
360102012330	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
360102012331	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
360102012332	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102012333	universal stress protein UspB; Provisional; Region: PRK04960
360102012334	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
360102012335	Ligand Binding Site [chemical binding]; other site
360102012336	glutamate dehydrogenase; Provisional; Region: PRK09414
360102012337	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Region: ELFV_dehydrog_N; pfam02812
360102012338	NAD(P) binding domain of glutamate dehydrogenase, subgroup 2; Region: NAD_bind_2_Glu_DH; cd05313
360102012339	NAD(P) binding site [chemical binding]; other site
360102012340	Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not...; Region: ZnMc_serralysin_like; cd04277
360102012341	active site
360102012342	Peptidase M10 serralysin C terminal; Region: Peptidase_M10_C; pfam08548
360102012343	putative methyltransferase; Provisional; Region: PRK10742
360102012344	oligopeptidase A; Provisional; Region: PRK10911
360102012345	Peptidase family M3 dipeptidyl carboxypeptidase (DCP); Region: M3A_DCP; cd06456
360102012346	active site
360102012347	Zn binding site [ion binding]; other site
360102012348	Protein involved in catabolism of external DNA [General function prediction only]; Region: ComJ; COG2961
360102012349	glutathione reductase; Validated; Region: PRK06116
360102012350	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
360102012351	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
360102012352	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
360102012353	Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]; Region: CdaR; COG3835
360102012354	Putative sugar diacid recognition; Region: Diacid_rec; pfam05651
360102012355	PucR C-terminal helix-turn-helix domain; Region: HTH_30; pfam13556
360102012356	H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]; Region: GntT; COG2610
360102012357	fructuronate transporter; Provisional; Region: PRK10034; cl15264
360102012358	Na+-H+ antiporter family; Region: Na_H_antiport_2; pfam13726
360102012359	Glycerate kinase [Carbohydrate transport and metabolism]; Region: COG1929
360102012360	Enterobacterial putative membrane protein (DUF943); Region: DUF943; pfam06092
360102012361	Enterobacterial putative membrane protein (DUF943); Region: DUF943; pfam06092
360102012362	Protein of unknown function (DUF3289); Region: DUF3289; cl11840
360102012363	Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V secretion system. Autotransporters are proteins used by Gram-negative bacteria to transport proteins across their outer membranes. The C-terminal (beta) domain...; Region: PL_Passenger_AT; cd00253
360102012364	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
360102012365	Autotransporter beta-domain; Region: Autotransporter; smart00869
360102012366	Virulence factor BrkB; Region: Virul_fac_BrkB; cl07918
360102012367	CDP-diacylglycerol pyrophosphatase [Lipid metabolism]; Region: Cdh; COG2134
360102012368	Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]; Region: AsmA; COG2982
360102012369	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
360102012370	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
360102012371	4-Oxalocrotonate Tautomerase:  Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one...; Region: 4Oxalocrotonate_Tautomerase; cl00235
360102012372	active site 1 [active]
360102012373	dimer interface [polypeptide binding]; other site
360102012374	hexamer interface [polypeptide binding]; other site
360102012375	active site 2 [active]
360102012376	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
360102012377	2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166
360102012378	substrate binding site [chemical binding]; other site
360102012379	ATP binding site [chemical binding]; other site
360102012380	Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612
360102012381	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
360102012382	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
360102012383	C4-dicarboxylate transporter DctA; Reviewed; Region: PRK01663
360102012384	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
360102012385	F5/8 type C domain; Region: F5_F8_type_C; pfam00754
360102012386	sugar binding site [chemical binding]; other site
360102012387	Periplasmic pectate lyase; Region: Pectate_lyase_2; pfam06917
360102012388	Oligogalacturonate-specific porin protein (KdgM); Region: KdgM; cl11629
360102012389	biofilm formation regulator HmsP; Provisional; Region: PRK11829
360102012390	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
360102012391	metal binding site [ion binding]; metal-binding site
360102012392	active site
360102012393	I-site; other site
360102012394	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
360102012395	endo-1,4-D-glucanase; Provisional; Region: PRK11097
360102012396	dipeptide transporter ATP-binding subunit; Provisional; Region: dppF; PRK11308
360102012397	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102012398	Walker A/P-loop; other site
360102012399	ATP binding site [chemical binding]; other site
360102012400	Q-loop/lid; other site
360102012401	ABC transporter signature motif; other site
360102012402	Walker B; other site
360102012403	D-loop; other site
360102012404	H-loop/switch region; other site
360102012405	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Region: oligo_HPY; TIGR01727
360102012406	dipeptide transporter ATP-binding subunit; Provisional; Region: dppD; PRK11022
360102012407	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
360102012408	Walker A/P-loop; other site
360102012409	ATP binding site [chemical binding]; other site
360102012410	Q-loop/lid; other site
360102012411	ABC transporter signature motif; other site
360102012412	Walker B; other site
360102012413	D-loop; other site
360102012414	H-loop/switch region; other site
360102012415	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Region: oligo_HPY; TIGR01727
360102012416	dipeptide transporter; Provisional; Region: PRK10913
360102012417	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
360102012418	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102012419	dimer interface [polypeptide binding]; other site
360102012420	conserved gate region; other site
360102012421	putative PBP binding loops; other site
360102012422	ABC-ATPase subunit interface; other site
360102012423	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
360102012424	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102012425	dimer interface [polypeptide binding]; other site
360102012426	conserved gate region; other site
360102012427	putative PBP binding loops; other site
360102012428	ABC-ATPase subunit interface; other site
360102012429	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
360102012430	The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold; Region: PBP2_DppA_like; cd08493
360102012431	peptide binding site [polypeptide binding]; other site
360102012432	Hemolysin activation/secretion protein [Intracellular trafficking and secretion]; Region: FhaC; COG2831
360102012433	POTRA domain, ShlB-type; Region: POTRA_2; pfam08479
360102012434	Haemolysin secretion/activation protein ShlB/FhaC/HecB; Region: ShlB; pfam03865
360102012435	haemagglutination activity domain; Region: Haemagg_act; pfam05860
360102012436	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102012437	regulatory protein UhpC; Provisional; Region: PRK11663
360102012438	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102012439	putative substrate translocation pore; other site
360102012440	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102012441	Histidine kinase; Region: HisKA_3; pfam07730
360102012442	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102012443	ATP binding site [chemical binding]; other site
360102012444	Mg2+ binding site [ion binding]; other site
360102012445	G-X-G motif; other site
360102012446	transposase/IS protein; Provisional; Region: PRK09183
360102012447	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102012448	Walker A motif; other site
360102012449	ATP binding site [chemical binding]; other site
360102012450	Walker B motif; other site
360102012451	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102012452	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102012453	DNA-binding interface [nucleotide binding]; DNA binding site
360102012454	Integrase core domain; Region: rve; pfam00665
360102012455	ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CbiO; COG1122
360102012456	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
360102012457	Fic family protein [Function unknown]; Region: COG3177
360102012458	Domain of unknown function (DUF4172); Region: DUF4172; pfam13776
360102012459	Fic/DOC family; Region: Fic; pfam02661
360102012460	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
360102012461	non-specific DNA binding site [nucleotide binding]; other site
360102012462	salt bridge; other site
360102012463	bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional; Region: PRK08099
360102012464	sequence-specific DNA binding site [nucleotide binding]; other site
360102012465	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
360102012466	active site
360102012467	nucleotide binding site [chemical binding]; other site
360102012468	HIGH motif; other site
360102012469	KMSKS motif; other site
360102012470	Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]; Region: NadR; COG3172
360102012471	DNA repair protein RadA; Provisional; Region: PRK11823
360102012472	Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of...; Region: Sms; cd01121
360102012473	Walker A motif/ATP binding site; other site
360102012474	ATP binding site [chemical binding]; other site
360102012475	Walker B motif; other site
360102012476	Subunit ChlI of Mg-chelatase; Region: ChlI; pfam13541
360102012477	phosphoserine phosphatase; Provisional; Region: serB; PRK11133
360102012478	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102012479	motif II; other site
360102012480	hypothetical protein; Provisional; Region: PRK11246
360102012481	purine nucleoside phosphorylase; Reviewed; Region: deoD; PRK05819
360102012482	Uridine phosphorylase [Nucleotide transport and metabolism]; Region: Udp; COG2820
360102012483	phosphopentomutase; Provisional; Region: PRK05362
360102012484	Metalloenzyme superfamily; Region: Metalloenzyme; pfam01676
360102012485	thymidine phosphorylase; Reviewed; Region: deoA; PRK05820
360102012486	Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591
360102012487	Pyrimidine nucleoside phosphorylase C-terminal domain; Region: PYNP_C; smart00941
360102012488	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
360102012489	Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591
360102012490	2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family; Region: DeoC; cd00959
360102012491	intersubunit interface [polypeptide binding]; other site
360102012492	active site
360102012493	catalytic residue [active]
360102012494	Nucleoside permease [Nucleotide transport and metabolism]; Region: NupC; COG1972
360102012495	Na+ dependent nucleoside transporter N-terminus; Region: Nucleos_tra2_N; pfam01773
360102012496	Nucleoside recognition; Region: Gate; pfam07670
360102012497	Na+ dependent nucleoside transporter C-terminus; Region: Nucleos_tra2_C; pfam07662
360102012498	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
360102012499	active site
360102012500	Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]; Region: COG4667
360102012501	Hypothetical patatin similar to yjju protein of Escherichia coli; Region: Pat_hypo_Ecoli_yjju_like; cd07208
360102012502	active site
360102012503	nucleophile elbow; other site
360102012504	periplasmic protein; Provisional; Region: PRK10568
360102012505	BON domain; Region: BON; pfam04972
360102012506	BON domain; Region: BON; pfam04972
360102012507	peptide chain release factor 3; Provisional; Region: prfC; PRK00741
360102012508	Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria; Region: RF3; cd04169
360102012509	G1 box; other site
360102012510	putative GEF interaction site [polypeptide binding]; other site
360102012511	GTP/Mg2+ binding site [chemical binding]; other site
360102012512	Switch I region; other site
360102012513	G2 box; other site
360102012514	G3 box; other site
360102012515	Switch II region; other site
360102012516	G4 box; other site
360102012517	G5 box; other site
360102012518	RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the...; Region: RF3_II; cd03689
360102012519	ribosomal-protein-alanine N-acetyltransferase; Provisional; Region: rimI; PRK09491
360102012520	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
360102012521	Coenzyme A binding pocket [chemical binding]; other site
360102012522	DNA polymerase III subunit psi; Validated; Region: PRK06856
360102012523	16S ribosomal RNA m2G1207 methyltransferase; Provisional; Region: rsmC; PRK09489
360102012524	Methyltransferase small domain N-terminal; Region: MTS_N; pfam08468
360102012525	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102012526	S-adenosylmethionine binding site [chemical binding]; other site
360102012527	Protein of unknown function (DUF1435); Region: DUF1435; pfam07256
360102012528	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
360102012529	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
360102012530	metal binding site [ion binding]; metal-binding site
360102012531	active site
360102012532	I-site; other site
360102012533	Pectinesterase; Region: Pectinesterase; pfam01095
360102012534	putative pectinesterase; Region: PLN02432; cl01911
360102012535	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
360102012536	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
360102012537	Peptidase family M23; Region: Peptidase_M23; pfam01551
360102012538	HlyD family secretion protein; Region: HlyD_3; pfam13437
360102012539	Protein of unknown function (DUF1049); Region: DUF1049; cl01539
360102012540	Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]; Region: RfaL; COG3307
360102012541	O-Antigen ligase; Region: Wzy_C; pfam04932
360102012542	lipopolysaccharide core biosynthesis protein; Provisional; Region: PRK10422
360102012543	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
360102012544	putative active site [active]
360102012545	autoinducer-2 (AI-2) kinase; Provisional; Region: PRK10939
360102012546	Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases; Region: FGGY_AI-2K; cd07775
360102012547	putative N- and C-terminal domain interface [polypeptide binding]; other site
360102012548	putative active site [active]
360102012549	putative MgATP binding site [chemical binding]; other site
360102012550	catalytic site [active]
360102012551	metal binding site [ion binding]; metal-binding site
360102012552	putative carbohydrate binding site [chemical binding]; other site
360102012553	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
360102012554	Putative sugar-binding domain; Region: Sugar-bind; pfam04198
360102012555	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cl17320
360102012556	non-specific DNA interactions [nucleotide binding]; other site
360102012557	DNA binding site [nucleotide binding]
360102012558	sequence specific DNA binding site [nucleotide binding]; other site
360102012559	putative cAMP binding site [chemical binding]; other site
360102012560	autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional; Region: PRK15439
360102012561	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102012562	Walker A/P-loop; other site
360102012563	ATP binding site [chemical binding]; other site
360102012564	Q-loop/lid; other site
360102012565	ABC transporter signature motif; other site
360102012566	Walker B; other site
360102012567	D-loop; other site
360102012568	H-loop/switch region; other site
360102012569	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102012570	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102012571	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102012572	TM-ABC transporter signature motif; other site
360102012573	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102012574	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102012575	TM-ABC transporter signature motif; other site
360102012576	autoinducer 2-binding protein lsrB; Provisional; Region: PRK15408
360102012577	Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs; Region: PBP1_LsrB_Quorum_Sensing; cd06302
360102012578	ligand binding site [chemical binding]; other site
360102012579	DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]; Region: FbaB; COG1830
360102012580	Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs); Region: DhnA; cd00958
360102012581	putative active site; other site
360102012582	catalytic residue [active]
360102012583	autoinducer-2 (AI-2) modifying protein LsrG; Provisional; Region: PRK10486
360102012584	hypothetical protein; Provisional; Region: PRK11667
360102012585	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
360102012586	dimerization domain swap beta strand [polypeptide binding]; other site
360102012587	regulatory protein interface [polypeptide binding]; other site
360102012588	active site
360102012589	regulatory phosphorylation site [posttranslational modification]; other site
360102012590	Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]; Region: PtsA; COG1080
360102012591	PEP-utilising enzyme, N-terminal; Region: PEP-utilisers_N; pfam05524
360102012592	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
360102012593	PEP-utilising enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
360102012594	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
360102012595	active site
360102012596	phosphorylation site [posttranslational modification]
360102012597	putative PTS system fructose-like transporter subunit EIIC; Provisional; Region: PRK10478
360102012598	PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and...; Region: PTS_IIB_fructose; cd05569
360102012599	active site
360102012600	P-loop; other site
360102012601	phosphorylation site [posttranslational modification]
360102012602	PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and...; Region: PTS_IIB_fructose; cd05569
360102012603	active site
360102012604	P-loop; other site
360102012605	phosphorylation site [posttranslational modification]
360102012606	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
360102012607	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102012608	Predicted membrane protein [Function unknown]; Region: COG4269
360102012609	Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]; Region: HtpX; COG0501
360102012610	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4924
360102012611	Uncharacterized protein conserved in bacteria N-term (DUF3322); Region: DUF3322; pfam11795
360102012612	Uncharacterized protein conserved in bacteria C-term(DUF2220); Region: DUF2220; pfam09983
360102012613	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4913
360102012614	Putative exonuclease SbcCD, C subunit; Region: SbcCD_C; pfam13558
360102012615	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3520
360102012616	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Region: HATPase_c_3; pfam13589
360102012617	ATP binding site [chemical binding]; other site
360102012618	Mg2+ binding site [ion binding]; other site
360102012619	G-X-G motif; other site
360102012620	DNA modification methylase [DNA replication, recombination, and repair]; Region: COG0863
360102012621	Methyltransferase domain; Region: Methyltransf_26; pfam13659
360102012622	McrBC 5-methylcytosine restriction system component [Defense mechanisms]; Region: McrC; COG4268
360102012623	GTPase subunit of restriction endonuclease [Defense mechanisms]; Region: McrB; COG1401
360102012624	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl17189
360102012625	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl17189
360102012626	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102012627	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102012628	DNA-binding interface [nucleotide binding]; DNA binding site
360102012629	Integrase core domain; Region: rve; pfam00665
360102012630	transposase/IS protein; Provisional; Region: PRK09183
360102012631	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102012632	Walker A motif; other site
360102012633	ATP binding site [chemical binding]; other site
360102012634	Walker B motif; other site
360102012635	esterase; Provisional; Region: PRK10566
360102012636	putative biofilm stress and motility protein A; Provisional; Region: PRK14864
360102012637	isovaleryl CoA dehydrogenase; Provisional; Region: PRK11561
360102012638	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
360102012639	active site
360102012640	23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional; Region: PRK11181
360102012641	RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; pfam08032
360102012642	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
360102012643	exoribonuclease R; Provisional; Region: PRK11642
360102012644	Ribonuclease R winged-helix domain; Region: HTH_12; pfam08461
360102012645	Ribonuclease B OB domain; Region: OB_RNB; pfam08206
360102012646	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
360102012647	RNB domain; Region: RNB; pfam00773
360102012648	S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase...; Region: S1_RNase_R; cd04471
360102012649	RNA binding site [nucleotide binding]; other site
360102012650	transcriptional repressor NsrR; Provisional; Region: PRK11014
360102012651	Rrf2 family protein; Region: rrf2_super; TIGR00738
360102012652	Adenylosuccinate synthetase; Region: Adenylsucc_synt; smart00788
360102012653	Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the...; Region: AdSS; cd03108
360102012654	GDP-binding site [chemical binding]; other site
360102012655	ACT binding site; other site
360102012656	IMP binding site; other site
360102012657	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3242
360102012658	FtsH protease regulator HflC; Provisional; Region: PRK11029
360102012659	Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflC; cd03405
360102012660	FtsH protease regulator HflK; Provisional; Region: PRK10930
360102012661	Bacterial membrane protein N terminal; Region: HflK_N; pfam12221
360102012662	Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflK; cd03404
360102012663	GTPase HflX; Provisional; Region: PRK11058
360102012664	GTP-binding GTPase N-terminal; Region: GTP-bdg_N; pfam13167
360102012665	HflX GTPase family; Region: HflX; cd01878
360102012666	G1 box; other site
360102012667	GTP/Mg2+ binding site [chemical binding]; other site
360102012668	Switch I region; other site
360102012669	G2 box; other site
360102012670	G3 box; other site
360102012671	Switch II region; other site
360102012672	G4 box; other site
360102012673	G5 box; other site
360102012674	bacterial Hfq-like; Region: Hfq; cd01716
360102012675	hexamer interface [polypeptide binding]; other site
360102012676	Sm1 motif; other site
360102012677	RNA binding site [nucleotide binding]; other site
360102012678	Sm2 motif; other site
360102012679	tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed; Region: miaA; PRK00091
360102012680	tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]; Region: MiaA; COG0324
360102012681	DNA mismatch repair protein; Reviewed; Region: mutL; PRK00095
360102012682	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102012683	ATP binding site [chemical binding]; other site
360102012684	Mg2+ binding site [ion binding]; other site
360102012685	G-X-G motif; other site
360102012686	MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL.  EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family.  This transducer domain is homologous to the second...; Region: MutL_Trans_MutL; cd03482
360102012687	ATP binding site [chemical binding]; other site
360102012688	MutL C terminal dimerisation domain; Region: MutL_C; pfam08676
360102012689	N-acetylmuramoyl-l-alanine amidase II; Provisional; Region: PRK10431
360102012690	AMIN domain; Region: AMIN; pfam11741
360102012691	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
360102012692	active site
360102012693	metal binding site [ion binding]; metal-binding site
360102012694	FOG: LysM repeat [Cell envelope biogenesis, outer membrane]; Region: LytE; COG1388
360102012695	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
360102012696	FOG: LysM repeat [Cell envelope biogenesis, outer membrane]; Region: LytE; COG1388
360102012697	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
360102012698	ADP-binding protein; Provisional; Region: PRK10646
360102012699	putative carbohydrate kinase; Provisional; Region: PRK10565
360102012700	Uncharacterized conserved protein [Function unknown]; Region: COG0062
360102012701	B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily; Region: YXKO-related; cd01171
360102012702	putative substrate binding site [chemical binding]; other site
360102012703	putative ATP binding site [chemical binding]; other site
360102012704	epoxyqueuosine reductase; Region: TIGR00276
360102012705	Domain of unknown function (DUF1730); Region: DUF1730; pfam08331
360102012706	DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins; Region: Orn; cd06135
360102012707	catalytic site [active]
360102012708	putative active site [active]
360102012709	putative substrate binding site [chemical binding]; other site
360102012710	dimer interface [polypeptide binding]; other site
360102012711	GTPase RsgA; Reviewed; Region: PRK12288
360102012712	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
360102012713	RNA binding site [nucleotide binding]; other site
360102012714	Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; Region: YjeQ_EngC; cd01854
360102012715	GTPase/Zn-binding domain interface [polypeptide binding]; other site
360102012716	GTP/Mg2+ binding site [chemical binding]; other site
360102012717	G4 box; other site
360102012718	G5 box; other site
360102012719	G1 box; other site
360102012720	Switch I region; other site
360102012721	G2 box; other site
360102012722	G3 box; other site
360102012723	Switch II region; other site
360102012724	phosphatidylserine decarboxylase; Reviewed; Region: psd; PRK00044
360102012725	putative mechanosensitive channel protein; Provisional; Region: PRK10929
360102012726	Mechanosensitive ion channel inner membrane domain 1; Region: MscS_TM; pfam12794
360102012727	Mechanosensitive ion channel; Region: MS_channel; pfam00924
360102012728	poxB regulator PoxA; Provisional; Region: PRK09350
360102012729	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
360102012730	motif 1; other site
360102012731	dimer interface [polypeptide binding]; other site
360102012732	active site
360102012733	motif 2; other site
360102012734	motif 3; other site
360102012735	fumarate reductase flavoprotein subunit; Validated; Region: PRK09231
360102012736	L-aspartate oxidase; Provisional; Region: PRK06175
360102012737	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
360102012738	fumarate reductase iron-sulfur subunit; Provisional; Region: PRK12385
360102012739	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
360102012740	catalytic loop [active]
360102012741	iron binding site [ion binding]; other site
360102012742	Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C;  QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine...; Region: QFR_TypeD_subunitC; cd00546
360102012743	D-subunit interface [polypeptide binding]; other site
360102012744	Iron-sulfur protein interface; other site
360102012745	proximal quinone binding site [chemical binding]; other site
360102012746	Quinol:fumarate reductase (QFR) Type D subfamily, 13kD hydrophobic subunit D; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine...; Region: QFR_TypeD_subunitD; cd00547
360102012747	Iron-sulfur protein interface; other site
360102012748	proximal quinone binding site [chemical binding]; other site
360102012749	C-subunit interface; other site
360102012750	distal quinone binding site; other site
360102012751	multidrug efflux system protein; Provisional; Region: PRK11431
360102012752	elongation factor P; Validated; Region: PRK00529
360102012753	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
360102012754	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
360102012755	RNA binding site [nucleotide binding]; other site
360102012756	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
360102012757	RNA binding site [nucleotide binding]; other site
360102012758	Lysine 2,3-aminomutase [Amino acid transport and metabolism]; Region: KamA; COG1509
360102012759	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102012760	FeS/SAM binding site; other site
360102012761	Domain of unknown function (DUF4156); Region: DUF4156; pfam13698
360102012762	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
360102012763	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
360102012764	ring oligomerisation interface [polypeptide binding]; other site
360102012765	ATP/Mg binding site [chemical binding]; other site
360102012766	stacking interactions; other site
360102012767	hinge regions; other site
360102012768	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
360102012769	oligomerisation interface [polypeptide binding]; other site
360102012770	mobile loop; other site
360102012771	roof hairpin; other site
360102012772	Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]; Region: FxsA; COG3030
360102012773	aspartate ammonia-lyase; Provisional; Region: aspA; PRK12273
360102012774	Aspartase; Region: Aspartase; cd01357
360102012775	active sites [active]
360102012776	tetramer interface [polypeptide binding]; other site
360102012777	Anaerobic C4-dicarboxylate transporter [General function prediction only]; Region: DcuB; COG2704
360102012778	anaerobic C4-dicarboxylate transporter; Reviewed; Region: PRK09412
360102012779	divalent-cation tolerance protein CutA; Provisional; Region: PRK10645
360102012780	thiol:disulfide interchange protein precursor; Provisional; Region: dipZ; PRK00293
360102012781	Disulphide bond corrector protein DsbC; Region: DsbC; pfam11412
360102012782	Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl15788
360102012783	DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD...; Region: DsbDgamma; cd02953
360102012784	DsbD alpha interface [polypeptide binding]; other site
360102012785	catalytic residues [active]
360102012786	formate dehydrogenase, alpha subunit, archaeal-type; Region: Fdh-alpha; TIGR01591
360102012787	Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is...; Region: MopB_Formate-Dh-H; cd02753
360102012788	[4Fe-4S] binding site [ion binding]; other site
360102012789	molybdopterin cofactor binding site; other site
360102012790	Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is...; Region: MopB_CT_Formate-Dh_H; cd02790
360102012791	molybdopterin cofactor binding site; other site
360102012792	Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]; Region: HycB; COG1142
360102012793	putative oxidoreductase Fe-S binding subunit; Reviewed; Region: PRK12769
360102012794	4Fe-4S binding domain; Region: Fer4; pfam00037
360102012795	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
360102012796	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
360102012797	putative transcriptional regulator; Provisional; Region: PRK11640
360102012798	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
360102012799	Viral enhancin protein; Region: Enhancin; pfam03272
360102012800	Peptidase M60-like family; Region: M60-like; pfam13402
360102012801	subtilase cytotoxin subunit B-like protein; Provisional; Region: PRK15265; cl14664
360102012802	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
360102012803	L-rhamnose-proton symport protein (RhaT); Region: RhaT; cl05728
360102012804	RhaT L-rhamnose-proton symporter family protein; Region: RhaT; TIGR00776
360102012805	transcriptional activator RhaR; Provisional; Region: PRK13501
360102012806	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
360102012807	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102012808	transcriptional activator RhaS; Provisional; Region: PRK13503
360102012809	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
360102012810	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102012811	L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases; Region: FGGY_RhuK; cd07771
360102012812	N- and C-terminal domain interface [polypeptide binding]; other site
360102012813	active site
360102012814	putative catalytic site [active]
360102012815	metal binding site [ion binding]; metal-binding site
360102012816	ATP binding site [chemical binding]; other site
360102012817	rhamnulokinase; Provisional; Region: rhaB; PRK10640
360102012818	carbohydrate binding site [chemical binding]; other site
360102012819	L-rhamnose isomerase; Provisional; Region: PRK01076
360102012820	Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]; Region: COG4952; cl17900
360102012821	Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II); Region: Aldolase_II; cd00398
360102012822	intersubunit interface [polypeptide binding]; other site
360102012823	active site
360102012824	Zn2+ binding site [ion binding]; other site
360102012825	Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH); Region: DHQ_Fe-ADH; cl02872
360102012826	active site
360102012827	NAD binding site [chemical binding]; other site
360102012828	transposase/IS protein; Provisional; Region: PRK09183
360102012829	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102012830	Walker A motif; other site
360102012831	ATP binding site [chemical binding]; other site
360102012832	Walker B motif; other site
360102012833	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102012834	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102012835	DNA-binding interface [nucleotide binding]; DNA binding site
360102012836	Integrase core domain; Region: rve; pfam00665
360102012837	Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH); Region: DHQ_Fe-ADH; cl02872
360102012838	metal binding site [ion binding]; metal-binding site
360102012839	L-rhamnose 1-epimerase; Region: YiiL_rotase; TIGR02625
360102012840	Single-stranded DNA-binding protein [DNA replication, recombination, and repair]; Region: Ssb; COG0629
360102012841	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
360102012842	dimer interface [polypeptide binding]; other site
360102012843	ssDNA binding site [nucleotide binding]; other site
360102012844	tetramer (dimer of dimers) interface [polypeptide binding]; other site
360102012845	Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold; Region: RPA_2b-aaRSs_OBF_like; cl09930
360102012846	excinuclease ABC subunit A; Reviewed; Region: uvrA; PRK00349
360102012847	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
360102012848	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
360102012849	ATP-binding cassette domain II of the excision repair protein UvrA; Region: ABC_UvrA_II; cd03271
360102012850	Uncharacterized protein conserved in bacteria [Function unknown]; Region: MmcQ; COG2315
360102012851	aromatic amino acid aminotransferase; Provisional; Region: PRK09257
360102012852	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
360102012853	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102012854	homodimer interface [polypeptide binding]; other site
360102012855	catalytic residue [active]
360102012856	alanine racemase; Reviewed; Region: alr; PRK00053
360102012857	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases; Region: PLPDE_III_AR_proteobact; cd06827
360102012858	active site
360102012859	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
360102012860	substrate binding site [chemical binding]; other site
360102012861	catalytic residues [active]
360102012862	dimer interface [polypeptide binding]; other site
360102012863	replicative DNA helicase; Provisional; Region: PRK08006
360102012864	DnaB-like helicase N terminal domain; Region: DnaB; pfam00772
360102012865	DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984
360102012866	Walker A motif; other site
360102012867	ATP binding site [chemical binding]; other site
360102012868	Walker B motif; other site
360102012869	DNA binding loops [nucleotide binding]
360102012870	quinone oxidoreductase, NADPH-dependent; Provisional; Region: PRK10754
360102012871	Quinone oxidoreductase (QOR); Region: QOR2; cd05286
360102012872	NADP binding site [chemical binding]; other site
360102012873	dimer interface [polypeptide binding]; other site
360102012874	phage shock protein G; Reviewed; Region: pspG; PRK09459
360102012875	tRNA-dihydrouridine synthase A; Provisional; Region: PRK11815
360102012876	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
360102012877	FMN binding site [chemical binding]; other site
360102012878	active site
360102012879	catalytic residues [active]
360102012880	substrate binding site [chemical binding]; other site
360102012881	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153
360102012882	metal binding site 2 [ion binding]; metal-binding site
360102012883	putative DNA binding helix; other site
360102012884	metal binding site 1 [ion binding]; metal-binding site
360102012885	dimer interface [polypeptide binding]; other site
360102012886	structural Zn2+ binding site [ion binding]; other site
360102012887	LexA repressor; Validated; Region: PRK00215
360102012888	LexA DNA binding domain; Region: LexA_DNA_bind; pfam01726
360102012889	Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC...; Region: S24_LexA-like; cd06529
360102012890	Catalytic site [active]
360102012891	Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]; Region: DgkA; COG0818
360102012892	glycerol-3-phosphate O-acyltransferase; Region: plsB; TIGR03703
360102012893	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like; Region: LPLAT_DHAPAT-like; cd07993
360102012894	putative acyl-acceptor binding pocket; other site
360102012895	4-hydroxybenzoate octaprenyltransferase; Reviewed; Region: ubiA; PRK12848
360102012896	UbiA prenyltransferase family; Region: UbiA; pfam01040
360102012897	chorismate pyruvate lyase; Provisional; Region: ubiC; PRK11655
360102012898	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43; Region: PL2_Passenger_AT; cd01344
360102012899	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
360102012900	Autotransporter beta-domain; Region: Autotransporter; smart00869
360102012901	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
360102012902	Berberine and berberine like; Region: BBE; pfam08031
360102012903	Uncharacterized protein contain chitin-binding domain type 3 [General function prediction only]; Region: COG3979
360102012904	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063
360102012905	Interdomain contacts; other site
360102012906	Cytokine receptor motif; other site
360102012907	chitin-binding domain of Chi A1-like proteins; Region: ChiA1_BD; cd12214
360102012908	putative fimbrial chaperone protein; Provisional; Region: PRK09918
360102012909	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102012910	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
360102012911	PapC N-terminal domain; Region: PapC_N; pfam13954
360102012912	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102012913	PapC C-terminal domain; Region: PapC_C; pfam13953
360102012914	Protein of unknown function (DUF1120); Region: DUF1120; cl05856
360102012915	Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms]; Region: TerZ; COG2310
360102012916	Uncharacterized proteins involved in stress response, similar to tellurium resistance terD; Region: TerD_like; cd06974
360102012917	putative metal binding site [ion binding]; other site
360102012918	Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms]; Region: TerZ; COG2310
360102012919	Uncharacterized proteins involved in stress response, similar to tellurium resistance terD; Region: TerD_like; cd06974
360102012920	putative metal binding site [ion binding]; other site
360102012921	Integral membrane protein TerC family; Region: TerC; cl10468
360102012922	tellurite resistance protein terB; Region: terB; cd07176
360102012923	putative metal binding site [ion binding]; other site
360102012924	Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms]; Region: TerZ; COG2310
360102012925	Uncharacterized proteins involved in stress response, similar to tellurium resistance terD; Region: TerD_like; cd06974
360102012926	putative metal binding site [ion binding]; other site
360102012927	Uncharacterized protein involved in stress response [General function prediction only]; Region: COG4110
360102012928	Uncharacterized proteins involved in stress response, similar to tellurium resistance terD; Region: TerD_like; cd06974
360102012929	putative metal binding site [ion binding]; other site
360102012930	Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms]; Region: TerZ; COG2310
360102012931	Uncharacterized proteins involved in stress response, similar to tellurium resistance terD; Region: TerD_like; cd06974
360102012932	putative metal binding site [ion binding]; other site
360102012933	ATP-grasp domain; Region: ATP-grasp_4; pfam13535
360102012934	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
360102012935	active site
360102012936	Protein of unknown function (DUF3706); Region: DUF3706; pfam12500
360102012937	Protein of unknown function (DUF2983); Region: DUF2983; pfam11202
360102012938	Citrate lyase beta subunit [Carbohydrate transport and metabolism]; Region: CitE; COG2301
360102012939	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cl17326
360102012940	Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase...; Region: MTHFR; cd00537
360102012941	FAD binding site [chemical binding]; other site
360102012942	coproporphyrinogen III oxidase; Provisional; Region: PRK09058
360102012943	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
360102012944	FeS/SAM binding site; other site
360102012945	Putative heme iron utilization protein [Inorganic ion transport and metabolism]; Region: HugX; COG3721
360102012946	atypical (a) SDRs, subgroup 5; Region: SDR_a5; cd05243
360102012947	NADH(P)-binding; Region: NAD_binding_10; pfam13460
360102012948	NAD(P) binding site [chemical binding]; other site
360102012949	putative active site [active]
360102012950	Hemin uptake protein hemP; Region: hemP; pfam10636
360102012951	TonB-dependent heme/hemoglobin receptor family protein; Region: TonB-hemin; TIGR01785
360102012952	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
360102012953	N-terminal plug; other site
360102012954	ligand-binding site [chemical binding]; other site
360102012955	Putative heme degradation protein [Inorganic ion transport and metabolism]; Region: HemS; COG3720
360102012956	Haemin-degrading HemS.ChuX domain; Region: HemS; pfam05171
360102012957	Haemin-degrading HemS.ChuX domain; Region: HemS; pfam05171
360102012958	ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: ChuT; COG4558
360102012959	Hemin binding protein HutB.  These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a...; Region: HutB; cd01149
360102012960	putative hemin binding site; other site
360102012961	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
360102012962	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102012963	ABC-ATPase subunit  interface; other site
360102012964	dimer interface [polypeptide binding]; other site
360102012965	putative PBP binding regions; other site
360102012966	hemin importer ATP-binding subunit; Provisional; Region: hmuV; PRK13548
360102012967	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
360102012968	Walker A/P-loop; other site
360102012969	ATP binding site [chemical binding]; other site
360102012970	Q-loop/lid; other site
360102012971	ABC transporter signature motif; other site
360102012972	Walker B; other site
360102012973	D-loop; other site
360102012974	H-loop/switch region; other site
360102012975	cystathionine beta-lyase; Provisional; Region: PRK09028
360102012976	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
360102012977	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102012978	catalytic residue [active]
360102012979	Amino acid permeases [Amino acid transport and metabolism]; Region: SdaC; COG0814
360102012980	threonine/serine transporter TdcC; Provisional; Region: PRK13629; cl17672
360102012981	Transcriptional regulator [Transcription]; Region: LysR; COG0583
360102012982	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102012983	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
360102012984	putative effector binding pocket; other site
360102012985	dimerization interface [polypeptide binding]; other site
360102012986	YedF is a bacterial SirA-like protein of unknown function.  SirA  (also known as UvrY,  and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system...; Region: YedF; cd03422
360102012987	CPxP  motif; other site
360102012988	putative inner membrane protein; Provisional; Region: PRK11099
360102012989	Sulphur transport; Region: Sulf_transp; pfam04143
360102012990	secretion system apparatus protein SsaU; Reviewed; Region: PRK12721
360102012991	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257; cl15822
360102012992	Type III secretory pathway, component EscT [Intracellular trafficking and secretion]; Region: EscT; COG4791
360102012993	Type III secretory pathway, component EscS [Intracellular trafficking and secretion]; Region: EscS; COG4794
360102012994	Type III secretory pathway, component EscR [Intracellular trafficking and secretion]; Region: EscR; COG4790
360102012995	type III secretion system protein SsaQ; Validated; Region: PRK08035
360102012996	Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliN; COG1886
360102012997	ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488
360102012998	type III secretion system ATPase; Validated; Region: PRK06820
360102012999	Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they...; Region: ATPase_flagellum-secretory_path_III; cd01136
360102013000	Walker A motif/ATP binding site; other site
360102013001	Walker B motif; other site
360102013002	secretion system apparatus protein SsaV; Provisional; Region: PRK12720
360102013003	FHIPEP family; Region: FHIPEP; pfam00771
360102013004	type III secretion apparatus protein, HrpE/YscL family; Region: HrpE_YscL_not; TIGR02499
360102013005	type III secretion system protein SsaK; Provisional; Region: PRK15354
360102013006	Type III secretion system subunit; Region: T3SS_LEE_assoc; pfam13327
360102013007	Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]; Region: EscJ; COG4669
360102013008	Type III secretion needle MxiH like; Region: MxiH; pfam09392
360102013009	type III secretion system protein, SsaH family; Region: type_III_ssaH; TIGR02498
360102013010	Type III secretion needle MxiH like; Region: MxiH; cl09641
360102013011	Helix-turn-helix domain; Region: HTH_18; pfam12833
360102013012	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102013013	type III secretion system protein, YseE family; Region: type_III_yscE; TIGR02501
360102013014	type III secretion system protein SsaD; Provisional; Region: PRK15367
360102013015	type III secretion apparatus protein, YscD/HrpQ family; Region: type_III_yscD; TIGR02500
360102013016	outer membrane secretin SsaC; Provisional; Region: PRK15346
360102013017	Prophage endopeptidase tail; Region: Prophage_tail; cl12123
360102013018	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
360102013019	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
360102013020	two component system sensor kinase SsrA; Provisional; Region: PRK15347
360102013021	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
360102013022	dimer interface [polypeptide binding]; other site
360102013023	phosphorylation site [posttranslational modification]
360102013024	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102013025	ATP binding site [chemical binding]; other site
360102013026	Mg2+ binding site [ion binding]; other site
360102013027	G-X-G motif; other site
360102013028	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102013029	active site
360102013030	phosphorylation site [posttranslational modification]
360102013031	intermolecular recognition site; other site
360102013032	dimerization interface [polypeptide binding]; other site
360102013033	Hpt domain; Region: Hpt; pfam01627
360102013034	two component system sensor kinase SsrB; Provisional; Region: PRK15369
360102013035	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102013036	active site
360102013037	phosphorylation site [posttranslational modification]
360102013038	intermolecular recognition site; other site
360102013039	dimerization interface [polypeptide binding]; other site
360102013040	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102013041	DNA binding residues [nucleotide binding]
360102013042	dimerization interface [polypeptide binding]; other site
360102013043	glutamate/aspartate:proton symporter; Provisional; Region: gltP; PRK11283
360102013044	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
360102013045	acetyl-CoA synthetase; Provisional; Region: PRK00174
360102013046	Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme); Region: ACS; cd05966
360102013047	active site
360102013048	CoA binding site [chemical binding]; other site
360102013049	acyl-activating enzyme (AAE) consensus motif; other site
360102013050	AMP binding site [chemical binding]; other site
360102013051	acetate binding site [chemical binding]; other site
360102013052	Predicted membrane protein [Function unknown]; Region: COG3162
360102013053	Predicted symporter [General function prediction only]; Region: DhlC; COG4147
360102013054	Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain; Region: SLC5sbd_u4; cd11480
360102013055	Na binding site [ion binding]; other site
360102013056	Abhydrolase family; Region: Abhydrolase_7; pfam12715
360102013057	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102013058	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102013059	DNA-binding interface [nucleotide binding]; DNA binding site
360102013060	Integrase core domain; Region: rve; pfam00665
360102013061	transposase/IS protein; Provisional; Region: PRK09183
360102013062	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102013063	Walker A motif; other site
360102013064	ATP binding site [chemical binding]; other site
360102013065	Walker B motif; other site
360102013066	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102013067	H-loop/switch region; other site
360102013068	ABC transporter; Region: ABC_tran_2; pfam12848
360102013069	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102013070	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
360102013071	Walker A/P-loop; other site
360102013072	ATP binding site [chemical binding]; other site
360102013073	Q-loop/lid; other site
360102013074	ABC transporter signature motif; other site
360102013075	putative outer membrane lipoprotein; Provisional; Region: PRK09967
360102013076	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
360102013077	ligand binding site [chemical binding]; other site
360102013078	putative inner membrane diguanylate cyclase; Provisional; Region: PRK09966
360102013079	HAMP domain; Region: HAMP; pfam00672
360102013080	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
360102013081	metal binding site [ion binding]; metal-binding site
360102013082	active site
360102013083	I-site; other site
360102013084	Domain of unknown function (DUF4154); Region: DUF4154; pfam13689
360102013085	Cation transporter/ATPase, N-terminus; Region: Cation_ATPase_N; smart00831
360102013086	Cation transport ATPase [Inorganic ion transport and metabolism]; Region: MgtA; COG0474
360102013087	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
360102013088	Putative hydrolase of sodium-potassium ATPase alpha subunit; Region: Hydrolase_like2; pfam13246
360102013089	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102013090	motif II; other site
360102013091	Cation transporting ATPase, C-terminus; Region: Cation_ATPase_C; pfam00689
360102013092	lytic murein transglycosylase; Provisional; Region: PRK11619
360102013093	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
360102013094	N-acetyl-D-glucosamine binding site [chemical binding]; other site
360102013095	catalytic residue [active]
360102013096	Trp operon repressor; Provisional; Region: PRK01381
360102013097	inosine/xanthosine triphosphatase; Reviewed; Region: PRK05074
360102013098	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
360102013099	catalytic core [active]
360102013100	right oriC-binding transcriptional activator; Provisional; Region: PRK15121
360102013101	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102013102	GyrI-like small molecule binding domain; Region: GyrI-like; pfam06445
360102013103	hypothetical protein; Provisional; Region: PRK10756
360102013104	CreA protein; Region: CreA; pfam05981
360102013105	two-component response regulator; Provisional; Region: PRK11173
360102013106	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102013107	active site
360102013108	phosphorylation site [posttranslational modification]
360102013109	intermolecular recognition site; other site
360102013110	dimerization interface [polypeptide binding]; other site
360102013111	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
360102013112	DNA binding site [nucleotide binding]
360102013113	bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional; Region: thrA; PRK09436
360102013114	AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli...; Region: AAK_AK-HSDH; cd04257
360102013115	putative catalytic residues [active]
360102013116	putative nucleotide binding site [chemical binding]; other site
360102013117	putative aspartate binding site [chemical binding]; other site
360102013118	ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH); Region: ACT_AKi-HSDH-ThrA-like_1; cd04921
360102013119	dimer interface [polypeptide binding]; other site
360102013120	putative threonine allosteric regulatory site; other site
360102013121	ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH); Region: ACT_AKi-HSDH-ThrA_2; cd04922
360102013122	putative threonine allosteric regulatory site; other site
360102013123	Homoserine dehydrogenase, NAD binding domain; Region: NAD_binding_3; pfam03447
360102013124	Homoserine dehydrogenase; Region: Homoserine_dh; pfam00742
360102013125	homoserine kinase; Provisional; Region: PRK01212
360102013126	GHMP kinases N terminal domain; Region: GHMP_kinases_N; pfam00288
360102013127	threonine synthase; Validated; Region: PRK09225
360102013128	Threonine synthase [Amino acid transport and metabolism]; Region: ThrC; COG0498
360102013129	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
360102013130	catalytic residue [active]
360102013131	hypothetical protein; Validated; Region: PRK02101
360102013132	transaldolase-like protein; Provisional; Region: PTZ00411
360102013133	Transaldolases including both TalA and TalB; Region: Transaldolase_TalAB; cd00957
360102013134	active site
360102013135	dimer interface [polypeptide binding]; other site
360102013136	catalytic residue [active]
360102013137	MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea; Region: MogA_MoaB; cd00886
360102013138	MPT binding site; other site
360102013139	trimer interface [polypeptide binding]; other site
360102013140	metabolite-proton symporter; Region: 2A0106; TIGR00883
360102013141	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
360102013142	putative substrate translocation pore; other site
360102013143	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
360102013144	hypothetical protein; Provisional; Region: PRK10659
360102013145	molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290
360102013146	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
360102013147	nucleotide binding site [chemical binding]; other site
360102013148	chaperone protein DnaJ; Provisional; Region: PRK10767
360102013149	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
360102013150	HSP70 interaction site [polypeptide binding]; other site
360102013151	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cl03262
360102013152	substrate binding site [polypeptide binding]; other site
360102013153	Zinc finger domain of DnaJ and HSP40; Region: DnaJ_zf; cd10719
360102013154	Zn binding sites [ion binding]; other site
360102013155	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747
360102013156	dimer interface [polypeptide binding]; other site
360102013157	pH-dependent sodium/proton antiporter; Reviewed; Region: nhaA; PRK09561
360102013158	transcriptional activator NhaR; Provisional; Region: nhaR; PRK11062
360102013159	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
360102013160	The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold; Region: PBP2_NhaR; cd08429
360102013161	putative dimerization interface [polypeptide binding]; other site
360102013162	30S ribosomal protein S20; Reviewed; Region: rpsT; PRK00239
360102013163	bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed; Region: PRK05627
360102013164	FAD synthetase, N-terminal domain of the bifunctional enzyme; Region: FAD_synthetase_N; cd02064
360102013165	active site
360102013166	Riboflavin kinase; Region: Flavokinase; smart00904
360102013167	isoleucyl-tRNA synthetase; Reviewed; Region: ileS; PRK05743
360102013168	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
360102013169	active site
360102013170	HIGH motif; other site
360102013171	nucleotide binding site [chemical binding]; other site
360102013172	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
360102013173	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
360102013174	active site
360102013175	KMSKS motif; other site
360102013176	Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases; Region: Anticodon_Ia_Ile_BEm; cd07960
360102013177	tRNA binding surface [nucleotide binding]; other site
360102013178	anticodon binding site; other site
360102013179	Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827
360102013180	lipoprotein signal peptidase; Reviewed; Region: lspA; PRK00376
360102013181	lipoprotein signal peptidase; Provisional; Region: PRK14787
360102013182	FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK15095
360102013183	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
360102013184	4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed; Region: ispH; PRK01045
360102013185	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]; Region: lytB; COG0761
360102013186	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102013187	Dihydrodipicolinate reductase [Amino acid transport and metabolism]; Region: DapB; COG0289
360102013188	Dihydrodipicolinate reductase, N-terminus; Region: DapB_N; pfam01113
360102013189	Dihydrodipicolinate reductase, C-terminus; Region: DapB_C; pfam05173
360102013190	carbamoyl phosphate synthase small subunit; Reviewed; Region: PRK12564
360102013191	Carbamoyl-phosphate synthase small chain, CPSase domain; Region: CPSase_sm_chain; smart01097
360102013192	Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II; Region: GATase1_CPSase; cd01744
360102013193	catalytic site [active]
360102013194	subunit interface [polypeptide binding]; other site
360102013195	carbamoyl phosphate synthase large subunit; Reviewed; Region: carB; PRK05294
360102013196	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
360102013197	Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; pfam02786
360102013198	Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Region: CPSase_L_D3; pfam02787
360102013199	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
360102013200	ATP-grasp domain; Region: ATP-grasp_4; cl17255
360102013201	Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways...; Region: MGS_CPS_II; cd01424
360102013202	IMP binding site; other site
360102013203	dimer interface [polypeptide binding]; other site
360102013204	interdomain contacts; other site
360102013205	partial ornithine binding site; other site
360102013206	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
360102013207	Uncharacterized conserved protein [Function unknown]; Region: COG2966
360102013208	Protein of unknown function (DUF1212); Region: DUF1212; pfam06738
360102013209	hypothetical protein; Provisional; Region: PRK09917
360102013210	Dihydrofolate reductase [Coenzyme metabolism]; Region: FolA; COG0262
360102013211	Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5; Region: DHFR; cd00209
360102013212	folate binding site [chemical binding]; other site
360102013213	NADP+ binding site [chemical binding]; other site
360102013214	Transposase IS200 like; Region: Y1_Tnp; pfam01797
360102013215	Protein of unknown function (DUF3757); Region: DUF3757; pfam12582
360102013216	Protein of unknown function (DUF3757); Region: DUF3757; pfam12582
360102013217	diadenosine tetraphosphatase; Reviewed; Region: apaH; PRK00166
360102013218	Escherichia coli ApaH and related proteins, metallophosphatase domain; Region: MPP_ApaH; cd07422
360102013219	active site
360102013220	metal binding site [ion binding]; metal-binding site
360102013221	CO2+/MG2+ efflux protein ApaG; Reviewed; Region: apaG; PRK05461
360102013222	16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed; Region: ksgA; PRK00274
360102013223	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102013224	S-adenosylmethionine binding site [chemical binding]; other site
360102013225	4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed; Region: pdxA; PRK00232
360102013226	peptidyl-prolyl cis-trans isomerase SurA; Provisional; Region: PRK10770
360102013227	SurA N-terminal domain; Region: SurA_N; pfam09312
360102013228	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
360102013229	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
360102013230	LPS assembly outer membrane complex protein LptD; Provisional; Region: PRK03761
360102013231	OstA-like protein; Region: OstA; pfam03968
360102013232	Organic solvent tolerance protein; Region: OstA_C; pfam04453
360102013233	Dna-J like membrane chaperone protein; Provisional; Region: djlA; PRK09430
360102013234	N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins; Region: terB_like_DjlA; cd07316
360102013235	putative metal binding site [ion binding]; other site
360102013236	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
360102013237	HSP70 interaction site [polypeptide binding]; other site
360102013238	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
360102013239	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
360102013240	active site
360102013241	Uncharacterized conserved protein [Function unknown]; Region: COG5419
360102013242	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3515
360102013243	ImpA-related N-terminal; Region: ImpA-rel_N; pfam06812
360102013244	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3516
360102013245	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3517; cl05484
360102013246	Protein of unknown function (DUF877); Region: DUF877; pfam05943
360102013247	transposase/IS protein; Provisional; Region: PRK09183
360102013248	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102013249	Walker A motif; other site
360102013250	ATP binding site [chemical binding]; other site
360102013251	Walker B motif; other site
360102013252	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102013253	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102013254	DNA-binding interface [nucleotide binding]; DNA binding site
360102013255	Integrase core domain; Region: rve; pfam00665
360102013256	MASE1; Region: MASE1; pfam05231
360102013257	DNA-binding transcriptional activator UhpA; Provisional; Region: PRK10360
360102013258	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
360102013259	active site
360102013260	phosphorylation site [posttranslational modification]
360102013261	intermolecular recognition site; other site
360102013262	dimerization interface [polypeptide binding]; other site
360102013263	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
360102013264	DNA binding residues [nucleotide binding]
360102013265	dimerization interface [polypeptide binding]; other site
360102013266	phosphoethanolamine transferase; Provisional; Region: PRK11560
360102013267	Domain of unknown function (DUF1705); Region: DUF1705; pfam08019
360102013268	Sulfatase; Region: Sulfatase; pfam00884
360102013269	Lysophospholipase [Lipid metabolism]; Region: PldB; COG2267
360102013270	putative proline-specific permease; Provisional; Region: proY; PRK10580
360102013271	Spore germination protein; Region: Spore_permease; cl17796
360102013272	Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL); Region: PAL-HAL; cd00332
360102013273	active sites [active]
360102013274	tetramer interface [polypeptide binding]; other site
360102013275	urocanate hydratase; Provisional; Region: PRK05414
360102013276	Cysteine synthase [Amino acid transport and metabolism]; Region: CysK; COG0031
360102013277	CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine; Region: CBS_like; cd01561
360102013278	dimer interface [polypeptide binding]; other site
360102013279	pyridoxal 5'-phosphate binding site [chemical binding]; other site
360102013280	catalytic residue [active]
360102013281	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
360102013282	active site
360102013283	hypothetical protein; Provisional; Region: PRK07206
360102013284	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
360102013285	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
360102013286	DNA-binding interface [nucleotide binding]; DNA binding site
360102013287	Integrase core domain; Region: rve; pfam00665
360102013288	transposase/IS protein; Provisional; Region: PRK09183
360102013289	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102013290	Walker A motif; other site
360102013291	ATP binding site [chemical binding]; other site
360102013292	Walker B motif; other site
360102013293	ATP-grasp domain; Region: ATP-grasp_4; pfam13535
360102013294	ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: CeuA; COG4607
360102013295	Siderophore binding protein FatB.  These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins...; Region: FatB; cd01140
360102013296	putative ligand binding residues [chemical binding]; other site
360102013297	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
360102013298	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102013299	ABC-ATPase subunit  interface; other site
360102013300	dimer interface [polypeptide binding]; other site
360102013301	putative PBP binding regions; other site
360102013302	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
360102013303	ABC-ATPase subunit  interface; other site
360102013304	dimer interface [polypeptide binding]; other site
360102013305	putative PBP binding regions; other site
360102013306	ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CeuD; COG4604
360102013307	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
360102013308	Walker A/P-loop; other site
360102013309	ATP binding site [chemical binding]; other site
360102013310	Q-loop/lid; other site
360102013311	ABC transporter signature motif; other site
360102013312	Walker B; other site
360102013313	D-loop; other site
360102013314	H-loop/switch region; other site
360102013315	Virulence protein [General function prediction only]; Region: COG3943
360102013316	Virulence protein RhuM family; Region: Virulence_RhuM; pfam13310
360102013317	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
360102013318	non-specific DNA binding site [nucleotide binding]; other site
360102013319	salt bridge; other site
360102013320	sequence-specific DNA binding site [nucleotide binding]; other site
360102013321	Transposase DDE domain; Region: DDE_Tnp_1_5; pfam13737
360102013322	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
360102013323	integrase; Provisional; Region: PRK09692
360102013324	Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801
360102013325	active site
360102013326	Int/Topo IB signature motif; other site
360102013327	Ligand-binding domain of DNA transcription repressor specific for xylose (XylR); Region: PBP1_XylR; cd01543
360102013328	putative dimerization interface [polypeptide binding]; other site
360102013329	Transcriptional regulators [Transcription]; Region: PurR; COG1609
360102013330	putative ligand binding site [chemical binding]; other site
360102013331	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102013332	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
360102013333	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
360102013334	Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of...; Region: TM_PBP1_branched-chain-AA_like; cl00454
360102013335	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
360102013336	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
360102013337	TM-ABC transporter signature motif; other site
360102013338	xylose transporter ATP-binding subunit; Provisional; Region: PRK13549
360102013339	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
360102013340	Walker A/P-loop; other site
360102013341	ATP binding site [chemical binding]; other site
360102013342	Q-loop/lid; other site
360102013343	ABC transporter signature motif; other site
360102013344	Walker B; other site
360102013345	D-loop; other site
360102013346	H-loop/switch region; other site
360102013347	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
360102013348	D-xylose transporter subunit XylF; Provisional; Region: xylF; PRK10355
360102013349	Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily; Region: PBP1_ABC_xylose_binding; cd01538
360102013350	putative ligand binding site [chemical binding]; other site
360102013351	xylose isomerase; Provisional; Region: PRK05474
360102013352	xylose isomerase; Region: xylose_isom_A; TIGR02630
360102013353	xylulokinase; Provisional; Region: PRK15027
360102013354	Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases; Region: FGGY_D-XK_EcXK-like; cd07808
360102013355	N- and C-terminal domain interface [polypeptide binding]; other site
360102013356	active site
360102013357	MgATP binding site [chemical binding]; other site
360102013358	catalytic site [active]
360102013359	metal binding site [ion binding]; metal-binding site
360102013360	xylulose binding site [chemical binding]; other site
360102013361	homodimer interface [polypeptide binding]; other site
360102013362	Fimbrial protein; Region: Fimbrial; pfam00419
360102013363	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
360102013364	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
360102013365	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
360102013366	PapC C-terminal domain; Region: PapC_C; pfam13953
360102013367	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102013368	PapC N-terminal domain; Region: PapC_N; pfam13954
360102013369	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
360102013370	Fimbrial protein; Region: Fimbrial; cl01416
360102013371	Predicted O-acyltransferase [General function prediction only]; Region: COG3274
360102013372	Acyltransferase family; Region: Acyl_transf_3; pfam01757
360102013373	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
360102013374	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102013375	Helix-turn-helix domain; Region: HTH_28; pfam13518
360102013376	putative transposase OrfB; Reviewed; Region: PHA02517
360102013377	HTH-like domain; Region: HTH_21; pfam13276
360102013378	Integrase core domain; Region: rve; pfam00665
360102013379	Integrase core domain; Region: rve_2; pfam13333
360102013380	sugar phosphate phosphatase; Provisional; Region: PRK10513
360102013381	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102013382	active site
360102013383	motif I; other site
360102013384	motif II; other site
360102013385	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102013386	DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939
360102013387	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
360102013388	Mg2+ binding site [ion binding]; other site
360102013389	G-X-G motif; other site
360102013390	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
360102013391	anchoring element; other site
360102013392	dimer interface [polypeptide binding]; other site
360102013393	ATP binding site [chemical binding]; other site
360102013394	TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the...; Region: TOPRIM_TopoIIA_GyrB; cd03366
360102013395	active site
360102013396	putative metal-binding site [ion binding]; other site
360102013397	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
360102013398	recF protein; Region: recf; TIGR00611
360102013399	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102013400	Walker A/P-loop; other site
360102013401	ATP binding site [chemical binding]; other site
360102013402	Q-loop/lid; other site
360102013403	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
360102013404	ABC transporter signature motif; other site
360102013405	Walker B; other site
360102013406	D-loop; other site
360102013407	H-loop/switch region; other site
360102013408	DNA polymerase III subunit beta; Validated; Region: PRK05643
360102013409	Beta clamp domain.  The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria.  The beta-clamp is structurally similar to the trimeric...; Region: beta_clamp; cd00140
360102013410	putative DNA binding surface [nucleotide binding]; other site
360102013411	dimer interface [polypeptide binding]; other site
360102013412	beta-clamp/clamp loader binding surface; other site
360102013413	beta-clamp/translesion DNA polymerase binding surface; other site
360102013414	DnaA N-terminal domain; Region: DnaA_N; pfam11638
360102013415	chromosomal replication initiator protein DnaA; Region: DnaA; TIGR00362
360102013416	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
360102013417	Walker A motif; other site
360102013418	ATP binding site [chemical binding]; other site
360102013419	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl17189
360102013420	Walker B motif; other site
360102013421	arginine finger; other site
360102013422	C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571
360102013423	DnaA box-binding interface [nucleotide binding]; other site
360102013424	50S ribosomal protein L34; Reviewed; Region: rpmH; PRK00399
360102013425	ribonuclease P; Reviewed; Region: rnpA; PRK01732
360102013426	hypothetical protein; Validated; Region: PRK00041
360102013427	membrane protein insertase; Provisional; Region: PRK01318
360102013428	membrane protein insertase, YidC/Oxa1 family, C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592
360102013429	tRNA modification GTPase TrmE; Reviewed; Region: trmE; PRK05291
360102013430	GTP-binding protein TrmE N-terminus; Region: TrmE_N; pfam10396
360102013431	trmE is a tRNA modification GTPase; Region: trmE; cd04164
360102013432	G1 box; other site
360102013433	GTP/Mg2+ binding site [chemical binding]; other site
360102013434	Switch I region; other site
360102013435	G2 box; other site
360102013436	Switch II region; other site
360102013437	G3 box; other site
360102013438	G4 box; other site
360102013439	G5 box; other site
360102013440	Catalytic cysteine-containing C-terminus of GTPase, MnmE; Region: GTPase_Cys_C; pfam12631
360102013441	trans-2-enoyl-CoA reductase; Provisional; Region: PRK13656
360102013442	NAD(P)H binding domain of trans-2-enoyl-CoA reductase; Region: Eno-Rase_NADH_b; pfam12242
360102013443	Trans-2-enoyl-CoA reductase catalytic region; Region: Enoyl_reductase; pfam12241
360102013444	Enoyl reductase FAD binding domain; Region: Eno-Rase_FAD_bd; pfam07055
360102013445	Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]; Region: COG2252
360102013446	6-phosphogluconate phosphatase; Provisional; Region: PRK10563
360102013447	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
360102013448	motif II; other site
360102013449	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102013450	dimer interface [polypeptide binding]; other site
360102013451	conserved gate region; other site
360102013452	putative PBP binding loops; other site
360102013453	ABC-ATPase subunit interface; other site
360102013454	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
360102013455	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102013456	dimer interface [polypeptide binding]; other site
360102013457	conserved gate region; other site
360102013458	putative PBP binding loops; other site
360102013459	ABC-ATPase subunit interface; other site
360102013460	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
360102013461	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102013462	substrate binding pocket [chemical binding]; other site
360102013463	membrane-bound complex binding site; other site
360102013464	hinge residues; other site
360102013465	Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]; Region: CcmA; COG1664
360102013466	Polymer-forming cytoskeletal; Region: Bactofilin; pfam04519
360102013467	transcriptional regulator PhoU; Provisional; Region: PRK11115
360102013468	PhoU domain; Region: PhoU; pfam01895
360102013469	PhoU domain; Region: PhoU; pfam01895
360102013470	phosphate transporter ATP-binding protein; Provisional; Region: pstB; PRK10744
360102013471	ATP-binding cassette domain of the phosphate transport system; Region: ABC_PstB_phosphate_transporter; cd03260
360102013472	Walker A/P-loop; other site
360102013473	ATP binding site [chemical binding]; other site
360102013474	Q-loop/lid; other site
360102013475	ABC transporter signature motif; other site
360102013476	Walker B; other site
360102013477	D-loop; other site
360102013478	H-loop/switch region; other site
360102013479	phosphate transporter permease subunit PtsA; Provisional; Region: pstA; PRK11268
360102013480	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102013481	dimer interface [polypeptide binding]; other site
360102013482	conserved gate region; other site
360102013483	putative PBP binding loops; other site
360102013484	ABC-ATPase subunit interface; other site
360102013485	phosphate transporter permease subunit PstC; Provisional; Region: pstC; PRK11275
360102013486	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
360102013487	dimer interface [polypeptide binding]; other site
360102013488	conserved gate region; other site
360102013489	putative PBP binding loops; other site
360102013490	ABC-ATPase subunit interface; other site
360102013491	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
360102013492	substrate binding pocket [chemical binding]; other site
360102013493	membrane-bound complex binding site; other site
360102013494	hinge residues; other site
360102013495	glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331
360102013496	Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In...; Region: GFAT; cd00714
360102013497	glutaminase active site [active]
360102013498	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
360102013499	dimer interface [polypeptide binding]; other site
360102013500	active site
360102013501	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
360102013502	dimer interface [polypeptide binding]; other site
360102013503	active site
360102013504	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional; Region: glmU; PRK09451
360102013505	N-terminal domain of bacterial GlmU; Region: GT2_GlmU_N_bac; cd02540
360102013506	Substrate binding site; other site
360102013507	Mg++ binding site; other site
360102013508	N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two...; Region: LbH_GlmU_C; cd03353
360102013509	active site
360102013510	substrate binding site [chemical binding]; other site
360102013511	CoA binding site [chemical binding]; other site
360102013512	F0F1 ATP synthase subunit epsilon; Validated; Region: atpC; PRK00571
360102013513	mitochondrial ATP synthase delta subunit; Region: F1-ATPase_delta; cd12152
360102013514	gamma subunit interface [polypeptide binding]; other site
360102013515	epsilon subunit interface [polypeptide binding]; other site
360102013516	LBP interface [polypeptide binding]; other site
360102013517	F0F1 ATP synthase subunit beta; Validated; Region: PRK09280
360102013518	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
360102013519	F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a...; Region: F1-ATPase_beta; cd01133
360102013520	alpha subunit interaction interface [polypeptide binding]; other site
360102013521	Walker A motif; other site
360102013522	ATP binding site [chemical binding]; other site
360102013523	Walker B motif; other site
360102013524	inhibitor binding site; inhibition site
360102013525	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
360102013526	mitochondrial ATP synthase gamma subunit; Region: F1-ATPase_gamma; cd12151
360102013527	core domain interface [polypeptide binding]; other site
360102013528	delta subunit interface [polypeptide binding]; other site
360102013529	epsilon subunit interface [polypeptide binding]; other site
360102013530	F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281
360102013531	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
360102013532	F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to...; Region: F1_ATPase_alpha; cd01132
360102013533	beta subunit interaction interface [polypeptide binding]; other site
360102013534	Walker A motif; other site
360102013535	ATP binding site [chemical binding]; other site
360102013536	Walker B motif; other site
360102013537	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
360102013538	F0F1 ATP synthase subunit delta; Validated; Region: PRK05758
360102013539	ATP synthase delta (OSCP) subunit; Region: OSCP; pfam00213
360102013540	F0F1 ATP synthase subunit B; Validated; Region: PRK05759
360102013541	F0F1-type ATP synthase, subunit b [Energy production and conversion]; Region: AtpF; COG0711
360102013542	F0F1 ATP synthase subunit C; Validated; Region: PRK06876
360102013543	F0F1-type ATP synthase, subunit a [Energy production and conversion]; Region: AtpB; COG0356
360102013544	F0F1 ATP synthase subunit A; Validated; Region: PRK05815
360102013545	F0F1 ATP synthase subunit I; Validated; Region: PRK08049
360102013546	Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]; Region: GidB; COG0357
360102013547	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
360102013548	S-adenosylmethionine binding site [chemical binding]; other site
360102013549	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated; Region: PRK05192
360102013550	NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]; Region: Gid; COG1206
360102013551	GidA associated domain 3; Region: GIDA_assoc_3; pfam13932