; training/training_Marseille_2012-03/ws_clients/python_clients/supported-organisms-genoscope.py -o /no_backup/rsa-tools/public_html/data/metabolic_networks/supported_organisms_genoscope.tab ; ; Time: 2012-08-21 07:29 ; ; Column content ; 1 ms_Organism_id Identifier of the organism in the MicroScope database (inherited from MetaCyc) ; 2 ms_Number Number of entry in the database (reflects history of import in MicroScope) ; 3 Organism_name Genus + species name ; 4 Taxon_id IAXID as specified in the NCBI taxonomy database ; #ms_Organism_id ms_Number Organism_name Taxon_id ECOLI-150 1 META-150 2 ACIAD31-150 3 Acinetobacter baylyi ADP1 62977 BACHD1-150 4 Bacillus halodurans C-125 272558 ECO572-150 5 Escherichia coli O157:H7 EDL933 155864 YERPE3-150 6 Yersinia pestis CO92 214092 MYCTU4-150 7 Mycobacterium tuberculosis H37Rv 83332 MYCTU6-150 8 Mycobacterium tuberculosis CDC1551 83331 PHOLU8-150 10 Photorhabdus luminescens TTO1 243265 YERPE10-150 11 Yersinia pestis KIM 187410 SULSO11-150 12 Sulfolobus solfataricus P2 273057 METTH12-150 13 Methanothermobacter thermautotrophicus Delta H 187420 METJA13-150 14 Methanocaldococcus jannaschii DSM 2661 243232 PYRAB14-150 15 Pyrococcus abyssi GE5 272844 CHLTR15-150 16 Chlamydia trachomatis D/UW-3/CX 272561 CHLPN16-150 17 Chlamydophila pneumoniae J138 138677 SYNY317-150 18 Synechocystis sp. PCC 6803 1148 MYCPN19-150 19 Mycoplasma pneumoniae M129 272634 NEIMA21-150 20 Neisseria meningitidis Z2491 122587 RICPR22-150 21 Rickettsia prowazekii Madrid E 272947 BORBU23-150 22 Borrelia burgdorferi B31 224326 THEMA24-150 23 Thermotoga maritima MSB8 243274 PSEPA26-150 24 Pseudomonas aeruginosa PAO1 208964 PSEHA27-150 25 Pseudoalteromonas haloplanktis TAC125 326442 SALTI28-150 26 Salmonella enterica subsp. enterica serovar Typhi CT18 220341 SALTY29-150 27 Salmonella typhimurium LT2 99287 NEIMB30-150 28 Neisseria meningitidis MC58 122586 KUST32-150 29 Kuenenia stuttgartiensis 174633 NEIGO34-150 30 Neisseria gonorrhoeae FA 1090 242231 COREF35-150 31 Corynebacterium efficiens YS-314 196164 AERPE36-150 32 Aeropyrum pernix K1 272557 STAAM37-150 33 Staphylococcus aureus subsp. aureus Mu50 158878 STRPN38-150 34 Streptococcus pneumoniae TIGR4 170187 CLOAB39-150 35 Clostridium acetobutylicum ATCC 824 272562 SHEON40-150 36 Shewanella oneidensis MR-1 211586 HAEIN42-150 37 Haemophilus influenzae Rd KW20 71421 VIBCH43-150 38 Vibrio cholerae N16961 243277 XYLFA44-150 39 Xylella fastidiosa 9a5c 160492 SHIFL45-150 40 Shigella flexneri 2a 2457T 198215 CAMJE46-150 41 Campylobacter jejuni subsp. jejuni NCTC 11168 192222 PSESM47-150 42 Pseudomonas syringae pv. tomato DC3000 223283 PSEPK48-150 43 Pseudomonas putida KT2440 160488 RALSO49-150 44 Ralstonia solanacearum GMI1000 267608 BACCR50-150 45 Bacillus cereus ATCC 14579 226900 BACC152-150 46 Bacillus cereus ATCC 10987 222523 BACAA53-150 47 Bacillus anthracis Ames 198094 FRAAL54-150 48 Frankia alni ACN14a 326424 STRCO55-150 49 Streptomyces coelicolor A3(2) 100226 ABAUR56-150 50 Acinetobacter baumannii AYE 470 BACAA57-150 51 Bacillus anthracis 'Ames Ancestor' 261594 PSEEN58-150 52 Pseudomonas entomophila L48 384676 ABAUS59-150 53 Acinetobacter baumannii SDF 470 BAC1461-150 54 Bacillus licheniformis ATCC 14580 279010 XENBO62-150 55 Xenorhabdus bovienii 40576 YEREN63-150 56 Yersinia enterocolitica 8081 393305 BACHK64-150 57 Bacillus thuringiensis serovar konkukian 97-27 281309 DESPS65-150 58 Desulfotalea psychrophila LSv54 177439 OCEIH68-150 59 Oceanobacillus iheyensis HTE831 221109 MYCGE69-150 60 Mycoplasma genitalium G37 243273 PHOAS70-150 61 Photorhabdus asymbiotica 291112 BORBR71-150 62 Bordetella bronchiseptica RB50 257310 BORPA72-150 63 Bordetella parapertussis 12822 257311 BORPE73-150 64 Bordetella pertussis Tohama I 257313 BORGA74-150 65 Borrelia garinii PBi 290434 TREPA75-150 66 Treponema pallidum subsp. pallidum Nichols 243276 TREDE76-150 67 Treponema denticola ATCC 35405 243275 LEPIN77-150 68 Leptospira interrogans serovar lai 56601 189518 LEPIC78-150 69 Leptospira interrogans serovar Copenhageni Fiocruz L1-130 267671 CORGL79-150 70 Corynebacterium glutamicum ATCC 13032 196627 LEPBI81-150 71 Leptospira biflexa serovar Patoc Patoc 1 456481 ECO5782-150 72 Escherichia coli O157:H7 Sakai 386585 ECOLI83-150 73 Escherichia coli CFT073 199310 BUCAI84-150 74 Buchnera aphidicola APS 107806 BUCBP85-150 75 Buchnera aphidicola Bp 224915 BUCAP86-150 76 Buchnera aphidicola Sg 198804 ERWCT87-150 77 Erwinia carotovora subsp. atroseptica SCRI1043 218491 WIGBR88-150 78 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 36870 BURMA89-150 79 Burkholderia mallei ATCC 23344 243160 BURPS90-150 80 Burkholderia pseudomallei K96243 272560 PYRFU91-150 81 Pyrococcus furiosus DSM 3638 186497 PYRHO92-150 82 Pyrococcus horikoshii OT3 70601 THEVO93-150 83 Thermoplasma volcanium GSS1 273116 VIBVU94-150 84 Vibrio vulnificus CMCP6 216895 HERAR96-150 85 Herminiimonas arsenicoxydans 204773 PSYBA97-150 86 Psychrobacter arcticus 273-4 259536 NMCN99-150 87 Neisseria meningitidis NEM8013 487 BRAJA100-150 88 Bradyrhizobium japonicum USDA 110 224911 RHILO101-150 89 Mesorhizobium loti MAFF303099 266835 RHIME102-150 90 Sinorhizobium meliloti 1021 266834 FRA103-150 91 Frankia sp. CcI3 106370 FREAN104-150 92 Frankia sp. EAN1pec 298653 BRAOR105-150 93 Bradyrhizobium sp. ORS278 114615 BRABT106-150 94 Bradyrhizobium sp. BTAi1 288000 SALCH107-150 95 Salmonella enterica subsp. enterica serovar Choleraesuis SC-B67 321314 BDEBA108-150 96 Bdellovibrio bacteriovorus HD100 264462 RHILE109-150 97 Rhizobium leguminosarum bv. viciae 3841 216596 RHOPA110-150 98 Rhodopseudomonas palustris CGA009 258594 PSEPF113-150 99 Pseudomonas fluorescens Pf-5 220664 PSESY114-150 100 Pseudomonas syringae pv. syringae B728a 205918 HELHP115-150 101 Helicobacter hepaticus ATCC 51449 235279 HELPJ116-150 102 Helicobacter pylori J99 85963 HELPY117-150 103 Helicobacter pylori 26695 85962 CAMJR118-150 104 Campylobacter jejuni RM1221 195099 WOLSU119-150 105 Wolinella succinogenes DSM 1740 273121 ECOS8120-150 110 Escherichia coli S88 562 ECOIA121-150 111 Escherichia coli IAI1 562 SHISS122-150 112 Shigella sonnei Ss046 300269 CLOAM123-150 113 Cloacamonas acidaminovorans 2323 ECED1125-150 114 Escherichia coli ED1a 562 ECIAI126-150 115 Escherichia coli IAI39 562 ECUMN127-150 116 Escherichia coli UMN026 562 ESCOL130-150 117 Escherichia coli 55989 562 EC42131-150 118 Escherichia coli 042 216592 RALEJ137-150 119 Ralstonia eutropha JMP134 264198 ECFER138-150 120 Escherichia fergusonii ATCC 35469T 564 PSE14139-150 121 Pseudomonas syringae pv. phaseolicola 1448A 264730 SHISB140-150 122 Shigella boydii Sb227 300268 SHISD141-150 123 Shigella dysenteriae Sd197 300267 BUR38143-150 124 Burkholderia sp. 383 269483 RALTA144-150 125 Cupriavidus taiwanensis LMG19424 164546 HEPYP145-150 126 Helicobacter pylori B38 210 METDI147-150 127 Methylobacterium extorquens DM4 661410 ECOLI149-150 128 Escherichia coli K12 83333 FRATT151-150 129 Francisella tularensis subsp. tularensis SCHU S4 177416 XENNE153-150 130 Xenorhabdus nematophila 628 METEX155-150 131 Methylobacterium extorquens AM1 272630 ESCUT156-150 132 Escherichia coli UTI89 364106 RHICF157-150 133 Rhizobium etli CFN 42 347834 RICFE161-150 134 Rickettsia felis URRWXCal2 315456 FUSNN162-150 135 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 190304 RALME163-150 136 Cupriavidus metallidurans CH34 266264 BURCE164-150 137 Burkholderia cenocepacia AU 1054 331271 BURTA165-150 138 Burkholderia thailandensis E264 271848 BURXE166-150 139 Burkholderia xenovorans LB400 266265 MYCPA167-150 140 Mycobacterium avium subsp. paratuberculosis K-10 262316 MYCA1168-150 141 Mycobacterium bovis AF2122/97 233413 MYCMC170-150 142 Mycobacterium sp. MCS 164756 HELHP171-150 143 Helicobacter pylori HPAG1 357544 MYCMA173-150 144 Mycobacterium marinum M 216594 MYCPA174-150 145 Mycobacterium smegmatis MC2 155 246196 HELSH175-150 146 Helicobacter acinonychis Sheeba 382638 THIDN176-150 147 Sulfurimonas denitrificans DSM 1251 326298 BORPK177-150 148 Borrelia afzelii PKo 390236 CLOPE178-150 149 Clostridium perfringens ATCC 13124 195103 CLOTE179-150 150 Clostridium tetani E88 212717 ECOLI180-150 151 Escherichia coli 536 362663 RALH1181-150 152 Ralstonia eutropha H16 381666 THIOM182-150 153 Thiomonas sp. 3As 426114 LEPJB184-150 154 Leptospira borgpetersenii serovar Hardjo-bovis JB197 355277 LEPL5185-150 155 Leptospira borgpetersenii serovar Hardjo-bovis L550 355276 CANNI186-150 156 Candidatus Nitrospira defluvii 330214 ESCAP188-150 157 Escherichia coli APEC O1 405955 RICCN189-150 158 Rickettsia conorii Malish 7 272944 RICBR190-150 159 Rickettsia bellii RML369-C 336407 RICTY191-150 160 Rickettsia typhi Wilmington 257363 NITHX193-150 161 Nitrobacter hamburgensis X14 323097 NITWN194-150 162 Nitrobacter winogradskyi Nb-255 323098 NITEU195-150 163 Nitrosomonas europaea ATCC 19718 228410 NITC7197-150 164 Nitrosomonas eutropha C71 335283 VIBF1198-150 165 Vibrio fischeri ES114 312309 VIBPA199-150 166 Vibrio parahaemolyticus RIMD 2210633 223926 VIBVY200-150 167 Vibrio vulnificus YJ016 196600 STRAW202-150 168 Streptomyces avermitilis MA-4680 227882 PHOPR203-150 169 Photobacterium profundum SS9 298386 VIBSP204-150 170 Vibrio splendidus LGP32 29497 BARKC205-150 171 Bartonella bacilliformis KC583 360095 BARHE206-150 172 Bartonella henselae Houston-1 283166 BARQU207-150 173 Bartonella quintana Toulouse 283165 STRP2208-150 174 Streptococcus pneumoniae D39 373153 STRR6209-150 175 Streptococcus pneumoniae R6 171101 ALHEH211-150 176 Alkalilimnicola ehrlichei MLHE-1 187272 PYR13212-150 177 Pyrobaculum arsenaticum DSM 13514 340102 STRA5213-150 178 Streptococcus agalactiae 2603V/R 208435 STRA1214-150 179 Streptococcus agalactiae A909 205921 STRA3215-150 180 Streptococcus agalactiae NEM316 211110 STRMU216-150 181 Streptococcus mutans UA159 210007 METEX218-150 182 Methylobacterium extorquens PA1 419610 STRP1219-150 183 Streptococcus pyogenes SF370 160490 STRP6220-150 184 Streptococcus pyogenes MGAS10394 286636 STRP8223-150 185 Streptococcus pyogenes MGAS8232 186103 STRPC224-150 186 Streptococcus pyogenes MGAS9429 370551 STRP3225-150 187 Streptococcus pyogenes SSI-1 193567 STRSV226-150 188 Streptococcus sanguinis SK36 388919 STRT1227-150 189 Streptococcus thermophilus CNRZ1066 299768 STRTD228-150 190 Streptococcus thermophilus LMD-9 322159 STRT2229-150 191 Streptococcus thermophilus LMG 18311 264199 STR05230-150 192 Streptococcus suis 05ZYH33 391295 STR98231-150 193 Streptococcus suis 98HAH33 391296 STRPG232-150 194 Streptococcus pyogenes Manfredo 160491 SHIFL233-150 195 Shigella flexneri 2a 301 198214 METAC235-150 196 Methanosarcina acetivorans C2A 188937 METBF236-150 197 Methanosarcina barkeri Fusaro 269797 METMA237-150 198 Methanosarcina mazei Go1 192952 CLSTI238-150 199 Clostridium sticklandii DSM 519 499177 ABA17241-150 200 Acinetobacter baumannii ATCC 17978 400667 STRCA242-150 201 Streptomyces cattleya NRRL 8057 1003195 NEIMF243-150 202 Neisseria meningitidis FAM18 272831 ARCFU244-150 203 Archaeoglobus fulgidus DSM 4304 224325 HALMA245-150 204 Haloarcula marismortui ATCC 43049 272569 CORGB246-150 205 Corynebacterium glutamicum R 340322 HALSA247-150 206 Halobacterium sp. NRC-1 64091 HALWD248-150 207 Haloquadratum walsbyi DSM 16790 362976 HYPBU249-150 208 Hyperthermus butylicus DSM 5456 415426 MET53250-150 209 Metallosphaera sedula DSM 5348 399549 METBU251-150 210 Methanococcoides burtonii DSM 6242 259564 METMP252-150 211 Methanococcus maripaludis C5 402880 METMP253-150 212 Methanococcus maripaludis S2 267377 METLZ254-150 213 Methanocorpusculum labreanum Z 410358 MET35255-150 214 Methanobrevibacter smithii ATCC 35061 420247 METMJ256-150 215 Methanoculleus marisnigri JR1 368407 METKA257-150 216 Methanopyrus kandleri AV19 190192 METTP258-150 217 Methanosaeta thermophila PT 349307 METST259-150 218 Methanosphaera stadtmanae DSM 3091 339860 METHJ260-150 219 Methanospirillum hungatei JF-1 323259 NANEQ261-150 220 Nanoarchaeum equitans Kin4-M 228908 NATPD262-150 221 Natronomonas pharaonis DSM 2160 348780 PICTO263-150 222 Picrophilus torridus DSM 9790 263820 PYRAE264-150 223 Pyrobaculum aerophilum IM2 178306 PYRCJ265-150 224 Pyrobaculum calidifontis JCM 11548 410359 PYRIL266-150 225 Pyrobaculum islandicum DSM 4184 384616 STAMF267-150 226 Staphylothermus marinus F1 399550 SULAC268-150 227 Sulfolobus acidocaldarius DSM 639 330779 SULTO269-150 228 Sulfolobus tokodaii 7 273063 PYRKO270-150 229 Thermococcus kodakarensis KOD1 69014 THEPD271-150 230 Thermofilum pendens Hrk 5 368408 THEAC272-150 231 Thermoplasma acidophilum DSM 1728 273075 UNCMA273-150 232 uncultured methanogenic archaeon RC-I 351160 METNA274-150 233 Methanococcus aeolicus Nankai-3 419665 METMP275-150 234 Methanococcus maripaludis C7 426368 METVA276-150 235 Methanococcus vannielii SB 406327 NOCFA277-150 236 Nocardia farcinica IFM 10152 247156 BUCCC279-150 237 Buchnera aphidicola Cc (Cinara cedri) 372461 BAUCH280-150 238 Baumannia cicadellinicola Hc (Homalodisca coagulata) 374463 CANFL281-150 239 Candidatus Blochmannia floridanus 203907 CANBP282-150 240 Candidatus Blochmannia pennsylvanicus BPEN 291272 SODGM283-150 241 Sodalis glossinidius 'morsitans' 343509 WOLTR284-150 242 Wolbachia endosymbiont TRS of Brugia malayi 292805 WOLPM285-150 243 Wolbachia pipientis wMel 163164 CANRU286-150 244 Candidatus Carsonella ruddii PV 387662 MYCH2287-150 245 Mycoplasma hyopneumoniae 232 295358 MYCH7288-150 246 Mycoplasma hyopneumoniae 7448 262722 MYCHJ289-150 247 Mycoplasma hyopneumoniae J 262719 LAWIP290-150 248 Lawsonia intracellularis PHE/MN1-00 363253 DAMO292-150 249 Candidatus Methylomirabilis oxyfera 2323 JANSC299-150 250 Janthinobacterium sp. Marseille 375286 ERYLH300-150 251 Escherichia coli W3110 316407 SHIFL301-150 252 Shigella flexneri 5 8401 373384 AZO57308-150 253 Azorhizobium caulinodans ORS 571 438753 METRJ311-150 254 Methylobacterium radiotolerans JCM 2831 426355 METPO312-150 255 Methylobacterium populi BJ001 441620 LISW6322-150 256 Magnetococcus sp. MC-1 156889 RHOP2323-150 257 Rhodospirillum rubrum ATCC 11170 269796 RHIME324-150 258 Rhodobacter sphaeroides 2.4.1 272943 RHOS5325-150 259 Rhodobacter sphaeroides ATCC 17029 349101 RHOS4326-150 260 Rhodobacter sphaeroides ATCC 17025 349102 VIBF1329-150 261 Vibrio harveyi ATCC BAA-1116 338187 AERS4332-150 262 Agrobacterium tumefaciens C58 176299 BAR10333-150 263 Bartonella tribocorum CIP 105476 382640 ONYPE335-150 264 Orientia tsutsugamushi Boryong 357244 RICFE336-150 265 Rickettsia massiliae MTU5 416276 RICIO337-150 266 Rickettsia rickettsii Iowa 452659 RICPR338-150 267 Rickettsia rickettsii 'Sheila Smith' 392021 RHORT339-150 268 Rickettsia akari Hartford 293614 RICAH340-150 269 Rickettsia bellii OSU 85-389 391896 RICBR341-150 270 Rickettsia canadensis McKiel 293613 RASOL344-150 271 Ralstonia solanacearum CMR15 859655 TREPA345-150 272 Trichodesmium erythraeum IMS101 203124 NOS71346-150 273 Nostoc sp PCC 7120 103690 ANASP347-150 274 Anabaena variabilis ATCC 29413 240292 SYMTH348-150 275 Synechococcus elongatus PCC6301 269084 SYNP6349-150 276 Synechococcus sp. CC9311 64471 SYNS3350-150 277 Synechococcus sp. CC9605 110662 SYMTH351-150 278 Thermosynechococcus elongatus BP-1 197221 PROMA352-150 279 Prochlorococcus marinus AS9601 146891 PROM2353-150 280 Prochlorococcus marinus MIT 9301 167546 MICNI354-150 281 Microcystis aeruginosa NIES-843 449447 OSCPC355-150 282 Oscillatoria sp PCC 6506 272129 YERAN356-150 283 Yersinia pestis Angola 349746 YERPE358-150 284 Yersinia pestis Antiqua 360102 YERNE359-150 285 Yersinia pestis Nepal516 377628 YERPN360-150 286 Yersinia pestis Pestoides F 386656 YER91361-150 287 Yersinia pestis biovar Microtus str. 91001 229193 YERPP362-150 288 Yersinia pseudotuberculosis IP 32953 273123 YERPS363-150 289 Yersinia pseudotuberculosis IP 31758 349747 YERYP364-150 290 Yersinia pseudotuberculosis YPIII 502800 MYCS2366-150 291 Mycobacterium sp. JLS 164757 MYCSJ367-150 292 Mycobacterium sp. KMS 189918 MYCAB368-150 293 Mycobacterium abscessus ATCC 19977 561007 MOOTA369-150 294 Mycobacterium avium 104 243243 MYCBO370-150 295 Mycobacterium bovis BCG Pasteur 1173P2 410289 MYCBP371-150 296 Mycobacterium gilvum PYR-GCK 350054 MYCF1372-150 297 Mycobacterium tuberculosis F11 336982 NEILA373-150 298 Neisseria lactamica ST640 486 MYCTU374-150 299 Mycobacterium tuberculosis H37Ra; ATCC 25177 419947 MYCTA375-150 300 Mycobacterium ulcerans Agy99 362242 MYCUA376-150 301 Mycobacterium vanbaalenii PYR-1 350058 NEIMB377-150 302 Neisseria meningitidis 053442 374833 CANGW378-150 303 Candidatus Sulcia muelleri GWSS 444179 OCEIH380-150 304 Ochrobactrum anthropi ATCC 49188 439375 HELSH381-150 305 Helicobacter pylori Shi470 512562 CAMC5382-150 306 Campylobacter fetus 82-40 360106 CAMFF383-150 307 Campylobacter hominis ATCC BAA-381 360107 STEK2384-150 308 Stenotrophomonas maltophilia K279a 522373 ALKMQ386-150 309 Alkaliphilus oremlandii OhILAs 350688 CLOAB387-150 310 Clostridium beijerinckii NCIMB 8052 290402 CLOBK388-150 311 Clostridium difficile 630 272563 CLOB1389-150 312 Clostridium botulinum A Hall 441771 CLOD6390-150 313 Clostridium kluyveri DSM 555 431943 CLOK5391-150 314 Clostridium novyi NT 386415 CLONN392-150 315 Clostridium perfringens str. 13 195102 STAAC393-150 316 Staphylococcus aureus subsp. aureus JH1 359787 CLOPS394-150 317 Clostridium phytofermentans ISDg 357809 LISIN395-150 318 Listeria monocytogenes EGD-e 169963 CLOTE396-150 319 Clostridium thermocellum ATCC 27405 203119 RALIP399-150 320 Ralstonia solanacearum Ipo1609 305 RALMO400-150 321 Ralstonia solanacearum Molk2 305 MARMM403-150 322 Marinobacter aquaeolei VT8 351348 NOCSJ405-150 323 Nostoc punctiforme ATCC 29133; PCC 73102 63737 AGRVI406-150 324 Agrobacterium vitis S4 311402 AGRK8407-150 325 Agrobacterium radiobacter K84 357 MICAP408-150 326 Microcystis aeruginosa PCC 7806 267872 ALHEH409-150 327 Alkaliphilus metalliredigens QYMF 293826 RALSP410-150 328 Ralstonia solanacearum PSI07 859657 AGRRA411-150 329 Agrobacterium tumefaciens K84 358 HELG2416-150 330 Helicobacter pylori G27 563041 HELP1420-150 331 Helicobacter pylori P12 570508 THE11421-150 332 Thermodesulfovibrio yellowstonii DSM 11347 289376 ALCSK422-150 333 Alcanivorax borkumensis SK2 393595 NEIG1423-150 334 Neisseria gonorrhoeae NCCP11945 521006 SALRD424-150 335 Salinispora arenicola CNS-205 391037 SALAI425-150 336 Salinispora tropica CNB-440 369723 DEIRA429-150 337 Delftia acidovorans SPH-1 398578 BORPE430-150 338 Bordetella petrii DSM 12804 340100 BURTA436-150 339 Burkholderia vietnamiensis G4 269482 DESPS448-150 340 Desulfotomaculum reducens MI-1 349161 ECOF1449-150 341 Escherichia coli F11 340197 ECOB7450-150 342 Escherichia coli B7A 340184 ECO22451-150 343 Escherichia coli E22 340185 ECO10452-150 344 Escherichia coli 101-1 358709 ECOB1453-150 345 Escherichia coli B171 344601 ECO19454-150 346 Escherichia coli E110019 340186 ECOUT455-150 347 Escherichia coli E24377A 331111 ERYLH456-150 348 Escherichia coli ATCC 8739 481805 ESCLF457-150 349 Escherichia coli LF82 591946 ESCE2458-150 350 Escherichia coli O127:H6 E2348/69 574521 ECO57459-150 351 Escherichia coli O157:H7 EC4115 444450 ECOLI460-150 352 Escherichia coli SE11 409438 ECOSE461-150 353 Escherichia coli SMS-3-5 439855 RCFBP462-150 354 Ralstonia solanacearum CFBP2957 859656 GEOOB516-150 355 Geodermatophilus obscurus DSM 43160 526225 OLICO520-150 356 Oligotropha carboxidovorans OM5; ATCC 49405 504832 LACF3527-150 357 Lactobacillus fermentum IFO 3956 334390 LACPL528-150 358 Lactobacillus plantarum WCFS 220668 LACS1529-150 359 Lactobacillus salivarius UCC118 362948 PEDPA530-150 360 Pediococcus pentosaceus ATCC 25745 278197 BARAS531-150 361 Bartonella grahamii as4aup 634504 POLSJ534-150 362 Polynucleobacter necessarius subsp. necessarius STIR1 452638 POLNS535-150 363 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 312153 NEMA1536-150 364 Neisseria meningitidis alpha14 487 RABDB537-150 365 Blood disease bacterium R229 741978 METSB540-150 366 Methylococcus capsulatus Bath 243233 METS4541-150 367 Methylocella silvestris BL2 395965 METPP542-150 368 Methylobacillus flagellatus KT 265072 RALME543-150 369 Ralstonia pickettii 12J 402626 COTES544-150 370 Comamonas testosteroni KF-1 399795 ESCRE545-150 371 Escherichia coli B REL606 413997 MOOTA546-150 372 Moorella thermoacetica ATCC 39073 264732 CARHZ547-150 373 Carboxydothermus hydrogenoformans Z-2901 246194 MAGGR550-150 374 Magnetospirillum gryphiswaldense MSR-1 431944 PSEP1554-150 375 Pseudomonas putida F1 351746 PSEPG555-150 376 Pseudomonas putida GB-1 76869 GLOVI556-150 377 Gloeobacter violaceus PCC 7421 251221 SYNJB557-150 378 Synechococcus sp JA-2-3B a 2-13 321332 SYNJA558-150 379 Synechococcus sp JA-3-3Ab 321327 CYAP4559-150 380 Cyanothece sp PCC 7425 395961 CYAP7560-150 381 Cyanothece sp PCC 7424 65393 SYNP7561-150 382 Synechococcus sp PCC 7002 32049 CYAP2562-150 383 Cyanothece sp PCC 8802 395962 ACAM1563-150 384 Acaryochloris marina MBIC11017 329726 STRGG565-150 385 Streptomyces griseus subsp griseus NBRC 13350 455632 BRUA1566-150 386 Brucella abortus S19 430066 BRUA3567-150 387 Brucella abortus bv 1 9-941 262698 BRUC2568-150 388 Brucella canis ATCC 23365 483179 BRUMB569-150 389 Brucella melitensis ATCC 23457 546272 LACC3571-150 390 Lactobacillus casei ATCC 334 321967 LACCB572-150 391 Lactobacillus casei BL23 543734 LACRG573-150 392 Lactobacillus rhamnosus GG (ATCC 53103) 568703 LACRL574-150 393 Lactobacillus rhamnosus Lc 705 568704 LACRL575-150 394 Lactobacillus rhamnosus HN001 486408 BRUME576-150 395 Brucella melitensis biovar Abortus 2308 359391 ARTAT577-150 396 Arthrobacter aurescens TC1 TC1; ATCC BAA-1386 290340 BRUME578-150 397 Brucella melitensis bv 1 16M 224914 ARTCA579-150 398 Arthrobacter chlorophenolicus A6 452863 ARTS2580-150 399 Arthrobacter sp FB24 290399 MICLC581-150 400 Micrococcus luteus NCTC 2665 465515 PSUK4582-150 401 Pseudomonas UK4 452680 SULMS583-150 402 Candidatus Sulcia muelleri SMDSEM 595499 HAMD5584-150 403 Candidatus Hamiltonella defensa T5A (Acyrthosiphon pisum) 572265 HODCD587-150 404 Candidatus Hodgkinia cicadicola Dsem 573234 PROAC592-150 405 Propionibacterium acnes KPA171202 267747 TROW8593-150 406 Tropheryma whipplei TW08 27 218496 NOCSJ594-150 407 Nocardioides sp JS614 196162 RALSY596-150 408 Ralstonia syzygii R24 907261 DESMR598-150 409 Desulfovibrio magneticus RS-1 573370 XYCED599-150 410 Xylanimonas cellulosilytica DSM 15894 446471 CEFLD600-150 411 Cellulomonas flavigena DSM 20109 446466 ESCAL601-150 412 Escherichia albertii TW07627 502347 JHTCC602-150 413 Janibacter HTCC2649 313589 METPP603-150 414 Methylibium petroleiphilum PM1 420662 AEMAD604-150 415 Aeromicrobium marinum DSM_15272 585531 KRFLD605-150 416 Kribbella flavida DSM 17836 479435 PROPF606-150 417 Propionibacterium sp oral taxon 191 F0233 553198 PSEPF607-150 418 Pseudomonas fluorescens Pf0-1 205922 PSEAB608-150 419 Pseudomonas aeruginosa UCBPP-PA14 208963 PSEA8610-150 420 Pseudomonas aeruginosa LESB58 557722 PSEFS611-150 421 Pseudomonas fluorescens SBW25 216595 BRUMC612-150 422 Brucella microti CCM 4915 568815 LEPCP613-150 423 Leptothrix cholodnii SP-6 395495 BRUO2614-150 424 Brucella ovis ATCC 25840 444178 BRUSU615-150 425 Brucella suis 1330 204722 BRUSI616-150 426 Brucella suis ATCC 23445 470137 YERPB617-150 427 Yersinia pseudotuberculosis PB1/+ 502801 YERPD618-150 428 Yersinia pestis D106004 637382 YERP1619-150 429 Yersinia pestis D182038 637385 YERPT620-150 430 Yersinia pestis Pestoides A 545431 YERPO621-150 431 Yersinia pestis biovar Orientalis India 195 547047 YERP2622-150 432 Yersinia pestis biovar Orientalis PEXU2 547046 YERPC623-150 433 Yersinia pestis CA88-4125 412420 YERP4624-150 434 Yersinia pestis biovar Antiqua B42003004 404215 YERP9625-150 435 Yersinia pestis biovar Antiqua E1979001 360099 YERPU626-150 436 Yersinia pestis biovar Antiqua UG05-0454 404218 YERPM627-150 437 Yersinia pestis biovar Mediaevalis K1973002 404216 YERPF628-150 438 Yersinia pestis biovar Orientalis F1991016 404214 YERPI629-150 439 Yersinia pestis biovar Orientalis IP275 373665 YERP5630-150 440 Yersinia pestis biovar Orientalis MG05-1020 404217 RHOE4645-150 441 Rhodococcus erythropolis PR4 (= NBRC 100887) 234621 RHOOB646-150 442 Rhodococcus opacus B4 632772 RHOJR647-150 443 Rhodococcus jostii RHA1 101510 AB510653-150 444 Azospirillum sp B510 137722 CYUCA657-150 445 Cyanobacterium UCYN-A 713887 VARPS658-150 446 Variovorax paradoxus S110 543728 THICR664-150 447 Thiomicrospira crunogena XCL-2 317025 FRATN665-150 448 Francisella novicida U112 401614 FRATM666-150 449 Francisella tularensis mediasiatica FSC147 441952 FRATO667-150 450 Francisella tularensis subsp holarctica OSU18 393011 FRATW670-150 451 Francisella tularensis subsp tularensis WY96-3418 418136 FRAT7671-150 452 Francisella tularensis subsp tularensis FSC 198 393115 MCMV672-150 453 Magnetite-containing magnetic vibrio MV-1 28181 FRATF673-150 454 Francisella tularensis subsp holarctica FTNF002-00 458234 FRAP2674-150 455 Francisella philomiragia subsp philomiragia ATCC 25017 484022 ACCPH676-150 456 Candidatus Accumulibacter phosphatis clade IIA UW-1 522306 BBGB680-150 457 Blattabacterium sp Blattella germanica Bge Alboraia 331104 BLASP681-150 458 Blattabacterium sp Periplaneta americana BPLAN 600809 WOLWR682-150 459 Wolbachia sp Wolbachia endosymbiont of Drosophila simulans wRi 66084 WOLPP683-150 460 Wolbachia endosymbiont of Culex quinquefasciatus Pel wPip 570417 ECAGI732-150 461 Escherichia coli APEC AGI-5 562 LACAC738-150 462 Lactobacillus acidophilus NCFM 272621 LACDA739-150 463 Lactobacillus delbrueckii subsp bulgaricus ATCC BAA-365 321956 LACDB740-150 464 Lactobacillus delbrueckii subsp bulgaricus ATCC 11842 390333 LACLM741-150 465 Lactococcus lactis subsp cremoris MG1363 416870 LACLS742-150 466 Lactococcus lactis subsp cremoris SK11 272622 BIFA0743-150 467 Bifidobacterium animalis subsp lactis AD011 442563 BIFLB744-150 468 Bifidobacterium animalis subsp lactis Bl-04; ATCC SD5219 580050 BIFAS745-150 469 Bifidobacterium animalis subsp lactis DSM 10140 555970 BIFLO746-150 470 Bifidobacterium longum NCC2705 206672 LACLK747-150 471 Lactococcus lactis subsp lactis KF147 684738 BIAHN748-150 472 Bifidobacterium animalis subsp. lactis HN019 486409 BIBIN749-150 473 Bifidobacterium bifidum NCIMB 41171 398513 BIBED750-150 474 Bifidobacterium breve DSM 20213 518634 ECO26751-150 475 Escherichia coli O26:H11 11368 573235 ECO10752-150 476 Escherichia coli O103:H2 12009 585395 ECO1A753-150 477 Escherichia coli O111:H- 11128 585396 ACIFV758-150 478 Acidaminococcus fermentans DSM 20731 591001 LACPJ759-150 479 Lactobacillus plantarum JDM1 644042 LACJF760-150 480 Lactobacillus johnsonii FI9785 633699 LACJO761-150 481 Lactobacillus johnsonii NCC 533 257314 THET8762-150 482 Thermus thermophilus HB8 300852 BURCC776-150 483 Burkholderia sp CCGE1002 640511 LISMH777-150 484 Listeria monocytogenes HCC23 552536 CLODR778-150 485 Clostridium difficile R20291 645463 CLODC779-150 486 Clostridium difficile CD196 645462 LACLA780-150 487 Lactococcus lactis subsp lactis IL1403 272623 LP87781-150 488 Lactobacillus paracasei subsp paracasei 8700:2 537973 RHOCS797-150 489 Rhodospirillum centenum SW; ATCC 51521 414684 DESVV799-150 490 Desulfovibrio vulgaris DP4 391774 DESVH800-150 491 Desulfovibrio vulgaris Hildenborough 882 RUW55801-150 492 Ralstonia solanacearum UW551 342110 DESDG802-150 493 Desulfovibrio desulfuricans subsp desulfuricans G20 207559 DEHSB804-150 494 Dehalococcoides sp BAV1 216389 DEHSC805-150 495 Dehalococcoides sp CBDB1 255470 DEHSG806-150 496 Dehalococcoides sp GT 633145 DEHSV807-150 497 Dehalococcoides sp VS 311424 DEHE1808-150 498 Dehalococcoides ethenogenes 195 243164 JONDD812-150 499 Jonesia denitrificans DSM 20603 471856 BEUC1815-150 500 Beutenbergia cavernae DSM 12333 471853 CLOLJ816-150 501 Clostridium ljungdahlii ATCC 49587 748727 SINMW817-150 502 Sinorhizobium medicae WSM419 366394 ACIDR822-150 503 Acinetobacter sp DR1 436717 ACIB5823-150 504 Acinetobacter baumannii AB0057 480119 ACIB3824-150 505 Acinetobacter baumannii AB307-0294 557600 ACIBC825-150 506 Acinetobacter baumannii ACICU 405416 ACIAB826-150 507 Acinetobacter baumannii AB056 710094 ACIA5827-150 508 Acinetobacter baumannii AB058 710095 ACIA9828-150 509 Acinetobacter baumannii AB059 710096 ACIA0829-150 510 Acinetobacter baumannii AB900 557601 ACIB1830-150 511 Acinetobacter baumannii ATCC 19606 575584 ACICA831-150 512 Acinetobacter calcoaceticus RUH2202 575585 ACIHA832-150 513 Acinetobacter haemolyticus ATCC 19194 707232 ACIJO833-150 514 Acinetobacter johnsonii SH046 575586 ACIJU834-150 515 Acinetobacter junii SH205 575587 ACILW835-150 516 Acinetobacter lwoffii SH145 575588 ACIRA836-150 517 Acinetobacter radioresistens SH164 575589 ACISK837-150 518 Acinetobacter radioresistens SK82 596318 ACI60838-150 519 Acinetobacter baumannii 6013113 592014 ACI50839-150 520 Acinetobacter baumannii 6013150 525243 CYAP8840-150 521 Cyanothece sp PCC 8801 41431 ACI59841-150 522 Acinetobacter baumannii 6014059 525242 ACI27842-150 523 Acinetobacter sp ATCC 27244 525244 ACIRU843-150 524 Acinetobacter sp RUH2624 575564 ACISH844-150 525 Acinetobacter sp SH024 575565 CLOCE850-150 526 Clostridium cellulolyticum H10; ATCC 35319 394503 GALCA856-150 527 Gallionella capsiferriformans ES-2 395494 XANNC857-150 528 Xanthomonas campestris pv musacearum NCPPB4381 559737 MYCHO861-150 529 Mycoplasma hominis PG21 347256 RHILS866-150 530 Rhizobium leguminosarum bv trifolii WSM1325 395491 RHILW867-150 531 Rhizobium leguminosarum bv trifolii WSM2304 395492 CLOC7869-150 532 Clostridium cellulovorans 743B 573061 CLOSA870-150 533 Clostridium saccharolyticum WM1 610130 AMYME871-150 534 Amycolatopsis mediterranei U32 749927 CORDI879-150 535 Corynebacterium diphtheriae NCTC 13129 257309 GORB4880-150 536 Gordonia bronchialis DSM 43247 526226 SEGRD881-150 537 Segniliparus rotundus DSM 44985 640132 TSUPD882-150 538 Tsukamurella paurometabola DSM 20162 521096 METUN884-150 539 Methyloversatilis universalis FAM5 378211 CANZI890-150 540 Candidatus Zinderia insecticola CARI 871271 CANSU891-150 541 Candidatus Sulcia muelleri CARI 706194 CENSA893-150 542 Cenarchaeum symbiosum A 414004 SYNAS894-150 543 Syntrophus aciditrophicus SB 56780 SYNWW895-150 544 Syntrophomonas wolfei subsp wolfei Goettingen 335541 KLEP3896-150 545 Klebsiella pneumoniae 342 507522 KLEP7897-150 546 Klebsiella pneumoniae subsp pneumoniae MGH 78578 272620 KLEP2898-150 547 Klebsiella pneumoniae NTUH-K2044 484021 ECOET902-150 548 Escherichia coli ETEC H10407 316401 ECOS1903-150 549 Escherichia coli SE15 431946 SHEPW904-150 550 Shewanella piezotolerans WP3 225849 DESAD905-150 551 Desulfovibrio salexigens DSM 2638 526222 DESVM906-150 552 Desulfovibrio vulgaris Miyazaki F 883 DESAE907-150 553 Desulfovibrio aespoeensis Aspo-2 643562 DESDA908-150 554 Desulfovibrio desulfuricans subsp desulfuricans ATCC 27774 525146 DESPI909-150 555 Desulfovibrio piger ATCC 29098 411464 DES3S910-150 556 Desulfovibrio sp 3_1_syn3 457398 DESFR911-150 557 Desulfovibrio fructosovorans JJ 596151 DESFW912-150 558 Desulfovibrio sp FW1012B 644968 SHEVD913-150 559 Shewanella violacea DSS12 637905 OPITP914-150 560 Opitutus terrae PB90-1 452637 HALED1019-150 561 Halomonas elongata DSM 2581 DSM 2581 768066 HELP31020-150 562 Helicobacter pylori B8 693745 HELPP1021-150 563 Helicobacter pylori PeCan4 765963 HELPM1022-150 564 Helicobacter pylori SJM180 765962 AMICL1023-150 565 Aminobacterium colombiense DSM 12261 572547 THEAS1024-150 566 Thermanaerovibrio acidaminovorans DSM 6589 525903 BACFN1025-150 567 Bacteroides fragilis NCTC 9343 ATCC 25285; NCTC 9343 272559 BACFR1026-150 568 Bacteroides fragilis YCH46 295405 BACTN1027-150 569 Bacteroides thetaiotaomicron VPI-5482 226186 BACV81028-150 570 Bacteroides vulgatus ATCC 8482 435590 BARHE1029-150 571 Bacteroides helcogenes P 36-108 693979 ZUNPS1030-150 572 Zunongwangia profunda SM-A87 SMA-87 655815 GRAFK1031-150 573 Gramella forsetii KT0803 411154 CROAH1032-150 574 Croceibacter atlanticus HTCC2559 216432 FLAJ11033-150 575 Flavobacterium johnsoniae UW101 UW101; ATCC 17061 376686 FLAPJ1034-150 576 Flavobacterium psychrophilum JIP02_86 402612 FLAB31035-150 577 Flavobacteriaceae bacterium 3519-10 531844 ECODH1037-150 578 Escherichia coli K-12 DH10B 316385 ECOBD1038-150 579 Escherichia coli BL21-Gold(DE3)pLysS AG 866768 ECOBW1039-150 580 Escherichia coli K-12 BW2952 595496 ESCDH1040-150 581 Escherichia coli DH1 536056 ECO531041-150 582 Escherichia coli 53638 344610 ESC401042-150 583 Escherichia coli O157:H7_EC4042 444449 ESC451043-150 584 Escherichia coli O157:H7_EC4045 444448 ESC061044-150 585 Escherichia coli O157:H7_EC4206 444447 ESCTW1045-150 586 Escherichia coli O157:H7_TW14588 502346 BURRH1046-150 587 Burkholderia rhizoxinica HKI 454 882378 ALISL1048-150 588 Aliivibrio salmonicida LFI1238 316275 VIBCM1049-150 589 Vibrio cholerae M66-2 579112 VIBCJ1050-150 590 Vibrio cholerae MJ-1236 593588 VIBC31051-150 591 Vibrio cholerae O395 345073 VIBFM1052-150 592 Vibrio fischeri MJ11 388396 VIBFN1053-150 593 Vibrio furnissii NCTC 11218 903510 VIBSE1054-150 594 Vibrio sp EX25 150340 VIBVM1055-150 595 Vibrio vulnificus MO6-24/O 914127 AGRH31061-150 596 Agrobacterium sp H13-3 861208 ARCPR1064-150 597 Archaeoglobus profundus DSM 5631 572546 MICL51067-150 598 Micromonospora sp L5 648999 CAUCN1083-150 599 Caulobacter crescentus CB15 190650 CHLMU1086-150 600 Chlamydia muridarum MopnTet14 83560 SALET1088-150 601 Salmonella enterica subsp enterica serovar Typhi Ty2 209261 CHLMU1089-150 602 Chlamydia muridarum Nigg MoPn 243161 CHLWE1090-150 603 Chlamydia muridarum Weiss 647227 CHLT21091-150 604 Chlamydia trachomatis 434 Bu 471472 CHLTB1092-150 605 Chlamydia trachomatis L2b UCH-1 proctitis 471473 CHLTA1093-150 606 Chlamydia trachomatis A HAR-13 A/HAR-13 315277 CHLAB1094-150 607 Chlamydophila abortus S26/3 218497 CHLCV1095-150 608 Chlamydophila caviae GPIC 227941 CHLFF1096-150 609 Chlamydophila felis Fe/C-56 264202 CHLPA1097-150 610 Chlamydophila pneumoniae AR39 115711 CHLPC1098-150 611 Chlamydophila pneumoniae CWL029 115713 CHLPT1099-150 612 Chlamydophila pneumoniae TW-183 182082 CANPR1100-150 613 Candidatus Protochlamydia amoebophila UWE25 264201 WADCW1101-150 614 Waddlia chondrophila WSU 86-1044 716544 PARAC1102-150 615 Parachlamydia acanthamoebae Halls coccus 159254 PARAU1103-150 616 Parachlamydia acanthamoebae UV7 83552 SIMNE1104-150 617 Simkania negevensis Z 83561 AMOAS1111-150 618 Candidatus Amoebophilus asiaticus 5a2 452471 AZOPS1112-150 619 Candidatus Azobacteroides pseudotrichonymphae genomovar CFP2 511995 SULDM1113-150 620 Candidatus Sulcia muelleri DMIN 641892 SULHC1114-150 621 Candidatus Sulcia muelleri str Hc 374675 METGP1143-150 622 Methanosaeta concilii GP-6 990316 BRAFD1145-150 623 Brachybacterium faecium DSM 4810 446465 CHIPD1146-150 624 Chitinophaga pinensis DSM 2588 485918 PEDHD1147-150 625 Pedobacter heparinus DSM 2366 485917 DYAFD1148-150 626 Dyadobacter fermentans DSM 18053 471854 KYTSD1149-150 627 Kytococcus sedentarius DSM 20547 478801 SPILD1150-150 628 Spirosoma linguale DSM 74 504472 EO10L1151-150 629 Escherichia coli O104:H4 LB226692 1040638 ROSDO1153-150 630 Roseobacter denitrificans OCh 114 375451 NEICI1154-150 631 Neisseria cinerea ATCC 14685 546262 STIAD1155-150 632 Stigmatella aurantiaca DW4/3-1 378806 CONWI1156-150 633 Conexibacter woesei DSM 14684 469383 CAPOD1157-150 634 Capnocytophaga ochracea DSM 7271 521097 PIRSD1158-150 635 Pirellula staleyi DSM 6068 530564 HALTU1159-150 636 Haloterrigena turkmenica DSM 5511 543526 CANNL1162-150 637 Candidatus Nitrosoarchaeum limnia SFB1 886738 SALTS1163-150 638 Salmonella enterica subsp. enterica serovar Typhimurium SL1344 216597 METI41184-150 639 Methylacidiphilum infernorum V4 481448 MESOP1188-150 640 Mesorhizobium opportunistum WSM2075 536019 MESCW1189-150 641 Mesorhizobium ciceri biovar biserrulae WSM1271 765698 MESSB1190-150 642 Chelativorans sp BNC1 266779 NITMU1191-150 643 Nitrosospira multiformis ATCC 25196 323848 NITAL1192-150 644 Nitrosomonas sp AL212 153948 NITIS1193-150 645 Nitrosomonas sp Is79A3 261292 NITOC1195-150 646 Nitrosococcus oceani ATCC 19707 323261 NITWA1196-150 647 Nitrosococcus watsonii C-113 105559 NITHN1197-150 648 Nitrosococcus halophilus Nc4 472759 NITMA1198-150 649 Nitrosopumilus maritimus SCM1 436308 BACSU7-150 650 Bacillus subtilis 168 224308