RSAT
NeAT
Network Analysis Tools
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Sylvain Brohée
RSAT
- Pathway Extractor
Parameters
Select a Genome for seeds/node mapping
(mandatory)
--- Gene Reaction ---
--genoscope
Acaryochloris_marina_MBIC11017-329726-genoscope
Acidaminococcus_fermentans_DSM_20731-591001-genoscope
Acinetobacter_baumannii_6013113-592014-genoscope
Acinetobacter_baumannii_6013150-525243-genoscope
Acinetobacter_baumannii_6014059-525242-genoscope
Acinetobacter_baumannii_AB0057-480119-genoscope
Acinetobacter_baumannii_AB056-710094-genoscope
Acinetobacter_baumannii_AB058-710095-genoscope
Acinetobacter_baumannii_AB059-710096-genoscope
Acinetobacter_baumannii_AB307-0294-557600-genoscope
Acinetobacter_baumannii_AB900-557601-genoscope
Acinetobacter_baumannii_ACICU-405416-genoscope
Acinetobacter_baumannii_ATCC_17978-400667-genoscope
Acinetobacter_baumannii_ATCC_19606-575584-genoscope
Acinetobacter_baumannii_AYE-470-genoscope
Acinetobacter_baumannii_SDF-470-genoscope
Acinetobacter_baylyi_ADP1-62977-genoscope
Acinetobacter_calcoaceticus_RUH2202-575585-genoscope
Acinetobacter_haemolyticus_ATCC_19194-707232-genoscope
Acinetobacter_johnsonii_SH046-575586-genoscope
Acinetobacter_junii_SH205-575587-genoscope
Acinetobacter_lwoffii_SH145-575588-genoscope
Acinetobacter_radioresistens_SH164-575589-genoscope
Acinetobacter_radioresistens_SK82-596318-genoscope
Acinetobacter_sp_ATCC_27244-525244-genoscope
Acinetobacter_sp_DR1-436717-genoscope
Acinetobacter_sp_RUH2624-575564-genoscope
Acinetobacter_sp_SH024-575565-genoscope
Aeromicrobium_marinum_DSM_15272-585531-genoscope
Aeropyrum_pernix_K1-272557-genoscope
Agrobacterium_radiobacter_K84-357-genoscope
Agrobacterium_sp_H13-3-861208-genoscope
Agrobacterium_tumefaciens_C58-176299-genoscope
Agrobacterium_tumefaciens_K84-358-genoscope
Agrobacterium_vitis_S4-311402-genoscope
Alcanivorax_borkumensis_SK2-393595-genoscope
Aliivibrio_salmonicida_LFI1238-316275-genoscope
Alkalilimnicola_ehrlichei_MLHE-1-187272-genoscope
Alkaliphilus_metalliredigens_QYMF-293826-genoscope
Alkaliphilus_oremlandii_OhILAs-350688-genoscope
Aminobacterium_colombiense_DSM_12261-572547-genoscope
Amycolatopsis_mediterranei_U32-749927-genoscope
Anabaena_variabilis_ATCC_29413-240292-genoscope
Archaeoglobus_fulgidus_DSM_4304-224325-genoscope
Archaeoglobus_profundus_DSM_5631-572546-genoscope
Arthrobacter_aurescens_TC1_TC1;_ATCC_BAA-1386-290340-genoscope
Arthrobacter_chlorophenolicus_A6-452863-genoscope
Arthrobacter_sp_FB24-290399-genoscope
Azorhizobium_caulinodans_ORS_571-438753-genoscope
Azospirillum_sp_B510-137722-genoscope
Bacillus_anthracis_'Ames_Ancestor'-261594-genoscope
Bacillus_anthracis_Ames-198094-genoscope
Bacillus_cereus_ATCC_10987-222523-genoscope
Bacillus_cereus_ATCC_14579-226900-genoscope
Bacillus_halodurans_C-125-272558-genoscope
Bacillus_licheniformis_ATCC_14580-279010-genoscope
Bacillus_subtilis-1423-Uniprot
Bacillus_subtilis_168-224308-genoscope
Bacillus_subtilis_168-224308-microcyc
Bacillus_thuringiensis_serovar_konkukian_97-27-281309-genoscope
Bacteroides_fragilis_NCTC_9343_ATCC_25285;_NCTC_9343-272559-genoscope
Bacteroides_fragilis_YCH46-295405-genoscope
Bacteroides_helcogenes_P_36-108-693979-genoscope
Bacteroides_thetaiotaomicron_VPI-5482-226186-genoscope
Bacteroides_vulgatus_ATCC_8482-435590-genoscope
Bartonella_bacilliformis_KC583-360095-genoscope
Bartonella_grahamii_as4aup-634504-genoscope
Bartonella_henselae_Houston-1-283166-genoscope
Bartonella_quintana_Toulouse-283165-genoscope
Bartonella_tribocorum_CIP_105476-382640-genoscope
Baumannia_cicadellinicola_Hc_(Homalodisca_coagulata)-374463-genoscope
Bdellovibrio_bacteriovorus_HD100-264462-genoscope
Beutenbergia_cavernae_DSM_12333-471853-genoscope
Bifidobacterium_animalis_subsp._lactis_HN019-486409-genoscope
Bifidobacterium_animalis_subsp_lactis_AD011-442563-genoscope
Bifidobacterium_animalis_subsp_lactis_Bl-04;_ATCC_SD5219-580050-genoscope
Bifidobacterium_animalis_subsp_lactis_DSM_10140-555970-genoscope
Bifidobacterium_bifidum_NCIMB_41171-398513-genoscope
Bifidobacterium_breve_DSM_20213-518634-genoscope
Bifidobacterium_longum_NCC2705-206672-genoscope
Blattabacterium_sp_Blattella_germanica_Bge_Alboraia-331104-genoscope
Blattabacterium_sp_Periplaneta_americana_BPLAN-600809-genoscope
Blood_disease_bacterium_R229-741978-genoscope
Bordetella_bronchiseptica_RB50-257310-genoscope
Bordetella_parapertussis_12822-257311-genoscope
Bordetella_pertussis_Tohama_I-257313-genoscope
Bordetella_petrii_DSM_12804-340100-genoscope
Borrelia_afzelii_PKo-390236-genoscope
Borrelia_burgdorferi_B31-224326-genoscope
Borrelia_garinii_PBi-290434-genoscope
Brachybacterium_faecium_DSM_4810-446465-genoscope
Bradyrhizobium_japonicum_USDA_110-224911-genoscope
Bradyrhizobium_sp._BTAi1-288000-genoscope
Bradyrhizobium_sp._ORS278-114615-genoscope
Brucella_abortus_S19-430066-genoscope
Brucella_abortus_bv_1_9-941-262698-genoscope
Brucella_canis_ATCC_23365-483179-genoscope
Brucella_melitensis_ATCC_23457-546272-genoscope
Brucella_melitensis_biovar_Abortus_2308-359391-genoscope
Brucella_melitensis_bv_1_16M-224914-genoscope
Brucella_microti_CCM_4915-568815-genoscope
Brucella_ovis_ATCC_25840-444178-genoscope
Brucella_suis_1330-204722-genoscope
Brucella_suis_ATCC_23445-470137-genoscope
Buchnera_aphidicola_APS-107806-genoscope
Buchnera_aphidicola_Bp-224915-genoscope
Buchnera_aphidicola_Cc_(Cinara_cedri)-372461-genoscope
Buchnera_aphidicola_Sg-198804-genoscope
Burkholderia_cenocepacia_AU_1054-331271-genoscope
Burkholderia_mallei_ATCC_23344-243160-genoscope
Burkholderia_pseudomallei_K96243-272560-genoscope
Burkholderia_rhizoxinica_HKI_454-882378-genoscope
Burkholderia_sp._383-269483-genoscope
Burkholderia_sp_CCGE1002-640511-genoscope
Burkholderia_thailandensis_E264-271848-genoscope
Burkholderia_vietnamiensis_G4-269482-genoscope
Burkholderia_xenovorans_LB400-266265-genoscope
Campylobacter_fetus_82-40-360106-genoscope
Campylobacter_hominis_ATCC_BAA-381-360107-genoscope
Campylobacter_jejuni_RM1221-195099-genoscope
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-192222-genoscope
Candidatus_Accumulibacter_phosphatis_clade_IIA_UW-1-522306-genoscope
Candidatus_Amoebophilus_asiaticus_5a2-452471-genoscope
Candidatus_Azobacteroides_pseudotrichonymphae_genomovar_CFP2-511995-genoscope
Candidatus_Blochmannia_floridanus-203907-genoscope
Candidatus_Blochmannia_pennsylvanicus_BPEN-291272-genoscope
Candidatus_Carsonella_ruddii_PV-387662-genoscope
Candidatus_Hamiltonella_defensa_T5A_(Acyrthosiphon_pisum)-572265-genoscope
Candidatus_Hodgkinia_cicadicola_Dsem-573234-genoscope
Candidatus_Methylomirabilis_oxyfera-2323-genoscope
Candidatus_Nitrosoarchaeum_limnia_SFB1-886738-genoscope
Candidatus_Nitrospira_defluvii-330214-genoscope
Candidatus_Protochlamydia_amoebophila_UWE25-264201-genoscope
Candidatus_Sulcia_muelleri_CARI-706194-genoscope
Candidatus_Sulcia_muelleri_DMIN-641892-genoscope
Candidatus_Sulcia_muelleri_GWSS-444179-genoscope
Candidatus_Sulcia_muelleri_SMDSEM-595499-genoscope
Candidatus_Sulcia_muelleri_str_Hc-374675-genoscope
Candidatus_Zinderia_insecticola_CARI-871271-genoscope
Capnocytophaga_ochracea_DSM_7271-521097-genoscope
Carboxydothermus_hydrogenoformans_Z-2901-246194-genoscope
Caulobacter_crescentus_CB15-190650-genoscope
Cellulomonas_flavigena_DSM_20109-446466-genoscope
Cenarchaeum_symbiosum_A-414004-genoscope
Chelativorans_sp_BNC1-266779-genoscope
Chitinophaga_pinensis_DSM_2588-485918-genoscope
Chlamydia_muridarum_MopnTet14-83560-genoscope
Chlamydia_muridarum_Nigg_MoPn-243161-genoscope
Chlamydia_muridarum_Weiss-647227-genoscope
Chlamydia_trachomatis_434_Bu-471472-genoscope
Chlamydia_trachomatis_A_HAR-13_A
Chlamydia_trachomatis_D
Chlamydia_trachomatis_L2b_UCH-1_proctitis-471473-genoscope
Chlamydophila_abortus_S26
Chlamydophila_caviae_GPIC-227941-genoscope
Chlamydophila_felis_Fe
Chlamydophila_pneumoniae_AR39-115711-genoscope
Chlamydophila_pneumoniae_CWL029-115713-genoscope
Chlamydophila_pneumoniae_J138-138677-genoscope
Chlamydophila_pneumoniae_TW-183-182082-genoscope
Cloacamonas_acidaminovorans-2323-genoscope
Clostridium_acetobutylicum_ATCC_824-272562-genoscope
Clostridium_beijerinckii_NCIMB_8052-290402-genoscope
Clostridium_botulinum_A_Hall-441771-genoscope
Clostridium_cellulolyticum_H10;_ATCC_35319-394503-genoscope
Clostridium_cellulovorans_743B-573061-genoscope
Clostridium_difficile_630-272563-genoscope
Clostridium_difficile_CD196-645462-genoscope
Clostridium_difficile_R20291-645463-genoscope
Clostridium_kluyveri_DSM_555-431943-genoscope
Clostridium_ljungdahlii_ATCC_49587-748727-genoscope
Clostridium_novyi_NT-386415-genoscope
Clostridium_perfringens_ATCC_13124-195103-genoscope
Clostridium_perfringens_str._13-195102-genoscope
Clostridium_phytofermentans_ISDg-357809-genoscope
Clostridium_saccharolyticum_WM1-610130-genoscope
Clostridium_sticklandii_DSM_519-499177-genoscope
Clostridium_tetani_E88-212717-genoscope
Clostridium_thermocellum_ATCC_27405-203119-genoscope
Comamonas_testosteroni_KF-1-399795-genoscope
Conexibacter_woesei_DSM_14684-469383-genoscope
Corynebacterium_diphtheriae_NCTC_13129-257309-genoscope
Corynebacterium_efficiens_YS-314-196164-genoscope
Corynebacterium_glutamicum_ATCC_13032-196627-genoscope
Corynebacterium_glutamicum_R-340322-genoscope
Croceibacter_atlanticus_HTCC2559-216432-genoscope
Cupriavidus_metallidurans_CH34-266264-genoscope
Cupriavidus_taiwanensis_LMG19424-164546-genoscope
Cyanobacterium_UCYN-A-713887-genoscope
Cyanothece_sp_PCC_7424-65393-genoscope
Cyanothece_sp_PCC_7425-395961-genoscope
Cyanothece_sp_PCC_8801-41431-genoscope
Cyanothece_sp_PCC_8802-395962-genoscope
Dehalococcoides_ethenogenes_195-243164-genoscope
Dehalococcoides_sp_BAV1-216389-genoscope
Dehalococcoides_sp_CBDB1-255470-genoscope
Dehalococcoides_sp_GT-633145-genoscope
Dehalococcoides_sp_VS-311424-genoscope
Delftia_acidovorans_SPH-1-398578-genoscope
Desulfotalea_psychrophila_LSv54-177439-genoscope
Desulfotomaculum_reducens_MI-1-349161-genoscope
Desulfovibrio_aespoeensis_Aspo-2-643562-genoscope
Desulfovibrio_desulfuricans_subsp_desulfuricans_ATCC_27774-525146-genoscope
Desulfovibrio_desulfuricans_subsp_desulfuricans_G20-207559-genoscope
Desulfovibrio_fructosovorans_JJ-596151-genoscope
Desulfovibrio_magneticus_RS-1-573370-genoscope
Desulfovibrio_piger_ATCC_29098-411464-genoscope
Desulfovibrio_salexigens_DSM_2638-526222-genoscope
Desulfovibrio_sp_3_1_syn3-457398-genoscope
Desulfovibrio_sp_FW1012B-644968-genoscope
Desulfovibrio_vulgaris_DP4-391774-genoscope
Desulfovibrio_vulgaris_Hildenborough-882-genoscope
Desulfovibrio_vulgaris_Miyazaki_F-883-genoscope
Dyadobacter_fermentans_DSM_18053-471854-genoscope
Erwinia_carotovora_subsp._atroseptica_SCRI1043-218491-genoscope
Escherichia_albertii__TW07627-502347-genoscope
Escherichia_coli_042-216592-genoscope
Escherichia_coli_101-1-358709-genoscope
Escherichia_coli_536-362663-genoscope
Escherichia_coli_53638-344610-genoscope
Escherichia_coli_55989-562-genoscope
Escherichia_coli_APEC_AGI-5-562-genoscope
Escherichia_coli_APEC_O1-405955-genoscope
Escherichia_coli_ATCC_8739-481805-genoscope
Escherichia_coli_B171-344601-genoscope
Escherichia_coli_B7A-340184-genoscope
Escherichia_coli_BL21-Gold(DE3)pLysS_AG-866768-genoscope
Escherichia_coli_B_REL606-413997-genoscope
Escherichia_coli_CFT073-199310-genoscope
Escherichia_coli_DH1-536056-genoscope
Escherichia_coli_E110019-340186-genoscope
Escherichia_coli_E22-340185-genoscope
Escherichia_coli_E24377A-331111-genoscope
Escherichia_coli_ED1a-562-genoscope
Escherichia_coli_ETEC_H10407-316401-genoscope
Escherichia_coli_F11-340197-genoscope
Escherichia_coli_IAI1-562-genoscope
Escherichia_coli_IAI39-562-genoscope
Escherichia_coli_K-12_BW2952-595496-genoscope
Escherichia_coli_K-12_DH10B-316385-genoscope
Escherichia_coli_K12-83333-genoscope
Escherichia_coli_LF82-591946-genoscope
Escherichia_coli_O103:H2_12009-585395-genoscope
Escherichia_coli_O104:H4_LB226692-1040638-genoscope
Escherichia_coli_O111:H-_11128-585396-genoscope
Escherichia_coli_O127:H6_E2348
Escherichia_coli_O157:H7_EC4115-444450-genoscope
Escherichia_coli_O157:H7_EDL933-155864-genoscope
Escherichia_coli_O157:H7_Sakai-386585-genoscope
Escherichia_coli_O26:H11_11368-573235-genoscope
Escherichia_coli_S88-562-genoscope
Escherichia_coli_SE11-409438-genoscope
Escherichia_coli_SE15-431946-genoscope
Escherichia_coli_SMS-3-5-439855-genoscope
Escherichia_coli_UMN026-562-genoscope
Escherichia_coli_UTI89-364106-genoscope
Escherichia_coli_W3110-316407-genoscope
Escherichia_coli__O157:H7_EC4042-444449-genoscope
Escherichia_coli__O157:H7_EC4045-444448-genoscope
Escherichia_coli__O157:H7_EC4206-444447-genoscope
Escherichia_coli__O157:H7_TW14588-502346-genoscope
Escherichia_coli_strain_K12-83333-Uniprot
Escherichia_fergusonii_ATCC_35469T-564-genoscope
Flavobacteriaceae_bacterium_3519-10-531844-genoscope
Flavobacterium_johnsoniae_UW101_UW101;_ATCC_17061-376686-genoscope
Flavobacterium_psychrophilum_JIP02_86-402612-genoscope
Francisella_novicida_U112-401614-genoscope
Francisella_philomiragia_subsp_philomiragia_ATCC_25017-484022-genoscope
Francisella_tularensis_mediasiatica_FSC147-441952-genoscope
Francisella_tularensis_subsp._tularensis_SCHU_S4-177416-genoscope
Francisella_tularensis_subsp_holarctica_FTNF002-00-458234-genoscope
Francisella_tularensis_subsp_holarctica_OSU18-393011-genoscope
Francisella_tularensis_subsp_tularensis_FSC_198-393115-genoscope
Francisella_tularensis_subsp_tularensis_WY96-3418-418136-genoscope
Frankia_alni_ACN14a-326424-genoscope
Frankia_sp._CcI3-106370-genoscope
Frankia_sp._EAN1pec-298653-genoscope
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586-190304-genoscope
Gallionella_capsiferriformans_ES-2-395494-genoscope
Geodermatophilus_obscurus_DSM_43160-526225-genoscope
Gloeobacter_violaceus_PCC_7421-251221-genoscope
Gordonia_bronchialis_DSM_43247-526226-genoscope
Gramella_forsetii_KT0803-411154-genoscope
Haemophilus_influenzae_Rd_KW20-71421-genoscope
Haloarcula_marismortui_ATCC_43049-272569-genoscope
Halobacterium_sp._NRC-1-64091-genoscope
Halomonas_elongata_DSM_2581_DSM_2581-768066-genoscope
Haloquadratum_walsbyi_DSM_16790-362976-genoscope
Haloterrigena_turkmenica_DSM_5511-543526-genoscope
Helicobacter_acinonychis_Sheeba-382638-genoscope
Helicobacter_hepaticus_ATCC_51449-235279-genoscope
Helicobacter_pylori_26695-85962-genoscope
Helicobacter_pylori_B38-210-genoscope
Helicobacter_pylori_B8-693745-genoscope
Helicobacter_pylori_G27-563041-genoscope
Helicobacter_pylori_HPAG1-357544-genoscope
Helicobacter_pylori_J99-85963-genoscope
Helicobacter_pylori_P12-570508-genoscope
Helicobacter_pylori_PeCan4-765963-genoscope
Helicobacter_pylori_SJM180-765962-genoscope
Helicobacter_pylori_Shi470-512562-genoscope
Herminiimonas_arsenicoxydans-204773-genoscope
Hyperthermus_butylicus_DSM_5456-415426-genoscope
Janibacter_HTCC2649-313589-genoscope
Janthinobacterium_sp._Marseille-375286-genoscope
Jonesia_denitrificans_DSM_20603-471856-genoscope
Klebsiella_pneumoniae_342-507522-genoscope
Klebsiella_pneumoniae_NTUH-K2044-484021-genoscope
Klebsiella_pneumoniae_subsp_pneumoniae_MGH_78578-272620-genoscope
Kribbella_flavida_DSM_17836-479435-genoscope
Kuenenia_stuttgartiensis-174633-genoscope
Kytococcus_sedentarius_DSM_20547-478801-genoscope
Lactobacillus_acidophilus_NCFM-272621-genoscope
Lactobacillus_casei_ATCC_334-321967-genoscope
Lactobacillus_casei_BL23-543734-genoscope
Lactobacillus_delbrueckii_subsp_bulgaricus_ATCC_11842-390333-genoscope
Lactobacillus_delbrueckii_subsp_bulgaricus_ATCC_BAA-365-321956-genoscope
Lactobacillus_fermentum_IFO_3956-334390-genoscope
Lactobacillus_johnsonii_FI9785-633699-genoscope
Lactobacillus_johnsonii_NCC_533-257314-genoscope
Lactobacillus_paracasei_subsp_paracasei_8700:2-537973-genoscope
Lactobacillus_plantarum_JDM1-644042-genoscope
Lactobacillus_plantarum_WCFS-220668-genoscope
Lactobacillus_rhamnosus_GG_(ATCC_53103)-568703-genoscope
Lactobacillus_rhamnosus_HN001-486408-genoscope
Lactobacillus_rhamnosus_Lc_705-568704-genoscope
Lactobacillus_salivarius_UCC118-362948-genoscope
Lactococcus_lactis_subsp_cremoris_MG1363-416870-genoscope
Lactococcus_lactis_subsp_cremoris_SK11-272622-genoscope
Lactococcus_lactis_subsp_lactis_IL1403-272623-genoscope
Lactococcus_lactis_subsp_lactis_KF147-684738-genoscope
Lawsonia_intracellularis_PHE
Leptospira_biflexa_serovar_Patoc_Patoc_1-456481-genoscope
Leptospira_borgpetersenii_serovar_Hardjo-bovis_JB197-355277-genoscope
Leptospira_borgpetersenii_serovar_Hardjo-bovis_L550-355276-genoscope
Leptospira_interrogans_serovar_Copenhageni_Fiocruz_L1-130-267671-genoscope
Leptospira_interrogans_serovar_lai_56601-189518-genoscope
Leptothrix_cholodnii_SP-6-395495-genoscope
Listeria_monocytogenes_EGD-e-169963-genoscope
Listeria_monocytogenes_HCC23-552536-genoscope
Magnetite-containing_magnetic_vibrio_MV-1-28181-genoscope
Magnetococcus_sp._MC-1-156889-genoscope
Magnetospirillum_gryphiswaldense_MSR-1-431944-genoscope
Marinobacter_aquaeolei_VT8-351348-genoscope
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271-765698-genoscope
Mesorhizobium_loti_MAFF303099-266835-genoscope
Mesorhizobium_opportunistum_WSM2075-536019-genoscope
Metallosphaera_sedula_DSM_5348-399549-genoscope
Methanobrevibacter_smithii_ATCC_35061-420247-genoscope
Methanocaldococcus_jannaschii_DSM_2661-243232-genoscope
Methanococcoides_burtonii_DSM_6242-259564-genoscope
Methanococcus_aeolicus_Nankai-3-419665-genoscope
Methanococcus_maripaludis_C5-402880-genoscope
Methanococcus_maripaludis_C7-426368-genoscope
Methanococcus_maripaludis_S2-267377-genoscope
Methanococcus_vannielii_SB-406327-genoscope
Methanocorpusculum_labreanum_Z-410358-genoscope
Methanoculleus_marisnigri_JR1-368407-genoscope
Methanopyrus_kandleri_AV19-190192-genoscope
Methanosaeta_concilii_GP-6-990316-genoscope
Methanosaeta_thermophila_PT-349307-genoscope
Methanosarcina_acetivorans_C2A-188937-genoscope
Methanosarcina_barkeri_Fusaro-269797-genoscope
Methanosarcina_mazei_Go1-192952-genoscope
Methanosphaera_stadtmanae_DSM_3091-339860-genoscope
Methanospirillum_hungatei_JF-1-323259-genoscope
Methanothermobacter_thermautotrophicus_Delta_H-187420-genoscope
Methylacidiphilum_infernorum_V4-481448-genoscope
Methylibium_petroleiphilum_PM1-420662-genoscope
Methylobacillus_flagellatus_KT-265072-genoscope
Methylobacterium_extorquens_AM1-272630-genoscope
Methylobacterium_extorquens_DM4-661410-genoscope
Methylobacterium_extorquens_PA1-419610-genoscope
Methylobacterium_populi_BJ001-441620-genoscope
Methylobacterium_radiotolerans_JCM_2831-426355-genoscope
Methylocella_silvestris_BL2-395965-genoscope
Methylococcus_capsulatus_Bath-243233-genoscope
Methyloversatilis_universalis_FAM5-378211-genoscope
Micrococcus_luteus_NCTC_2665-465515-genoscope
Microcystis_aeruginosa_NIES-843-449447-genoscope
Microcystis_aeruginosa_PCC_7806-267872-genoscope
Micromonospora_sp_L5-648999-genoscope
Moorella_thermoacetica_ATCC_39073-264732-genoscope
Mycobacterium_abscessus_ATCC_19977-561007-genoscope
Mycobacterium_avium_104-243243-genoscope
Mycobacterium_avium_subsp._paratuberculosis_K-10-262316-genoscope
Mycobacterium_bovis_AF2122
Mycobacterium_bovis_BCG_Pasteur_1173P2-410289-genoscope
Mycobacterium_gilvum_PYR-GCK-350054-genoscope
Mycobacterium_marinum_M-216594-genoscope
Mycobacterium_smegmatis_MC2_155-246196-genoscope
Mycobacterium_sp._JLS-164757-genoscope
Mycobacterium_sp._KMS-189918-genoscope
Mycobacterium_sp._MCS-164756-genoscope
Mycobacterium_tuberculosis_CDC1551-83331-genoscope
Mycobacterium_tuberculosis_F11-336982-genoscope
Mycobacterium_tuberculosis_H37Ra;_ATCC_25177-419947-genoscope
Mycobacterium_tuberculosis_H37Rv-83332-genoscope
Mycobacterium_ulcerans_Agy99-362242-genoscope
Mycobacterium_vanbaalenii_PYR-1-350058-genoscope
Mycoplasma_genitalium_G37-243273-genoscope
Mycoplasma_hominis_PG21-347256-genoscope
Mycoplasma_hyopneumoniae_232-295358-genoscope
Mycoplasma_hyopneumoniae_7448-262722-genoscope
Mycoplasma_hyopneumoniae_J-262719-genoscope
Mycoplasma_pneumoniae_M129-272634-genoscope
Nanoarchaeum_equitans_Kin4-M-228908-genoscope
Natronomonas_pharaonis_DSM_2160-348780-genoscope
Neisseria_cinerea_ATCC_14685-546262-genoscope
Neisseria_gonorrhoeae_FA_1090-242231-genoscope
Neisseria_gonorrhoeae_NCCP11945-521006-genoscope
Neisseria_lactamica_ST640-486-genoscope
Neisseria_meningitidis_053442-374833-genoscope
Neisseria_meningitidis_FAM18-272831-genoscope
Neisseria_meningitidis_MC58-122586-genoscope
Neisseria_meningitidis_NEM8013-487-genoscope
Neisseria_meningitidis_Z2491-122587-genoscope
Neisseria_meningitidis_alpha14-487-genoscope
Nitrobacter_hamburgensis_X14-323097-genoscope
Nitrobacter_winogradskyi_Nb-255-323098-genoscope
Nitrosococcus_halophilus_Nc4-472759-genoscope
Nitrosococcus_oceani_ATCC_19707-323261-genoscope
Nitrosococcus_watsonii_C-113-105559-genoscope
Nitrosomonas_europaea_ATCC_19718-228410-genoscope
Nitrosomonas_eutropha_C71-335283-genoscope
Nitrosomonas_sp_AL212-153948-genoscope
Nitrosomonas_sp_Is79A3-261292-genoscope
Nitrosopumilus_maritimus_SCM1-436308-genoscope
Nitrosospira_multiformis_ATCC_25196-323848-genoscope
Nocardia_farcinica_IFM_10152-247156-genoscope
Nocardioides_sp_JS614-196162-genoscope
Nostoc_punctiforme_ATCC_29133;_PCC_73102-63737-genoscope
Nostoc_sp_PCC_7120-103690-genoscope
Oceanobacillus_iheyensis_HTE831-221109-genoscope
Ochrobactrum_anthropi_ATCC_49188-439375-genoscope
Oligotropha_carboxidovorans_OM5;_ATCC_49405-504832-genoscope
Opitutus_terrae_PB90-1-452637-genoscope
Orientia_tsutsugamushi_Boryong-357244-genoscope
Oscillatoria_sp_PCC_6506-272129-genoscope
Parachlamydia_acanthamoebae_Halls_coccus-159254-genoscope
Parachlamydia_acanthamoebae_UV7-83552-genoscope
Pediococcus_pentosaceus_ATCC_25745-278197-genoscope
Pedobacter_heparinus_DSM_2366-485917-genoscope
Photobacterium_profundum_SS9-298386-genoscope
Photorhabdus_asymbiotica-291112-genoscope
Photorhabdus_luminescens_TTO1-243265-genoscope
Picrophilus_torridus_DSM_9790-263820-genoscope
Pirellula_staleyi_DSM_6068-530564-genoscope
Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1-312153-genoscope
Polynucleobacter_necessarius_subsp._necessarius_STIR1-452638-genoscope
Prochlorococcus_marinus_AS9601-146891-genoscope
Prochlorococcus_marinus_MIT_9301-167546-genoscope
Propionibacterium_acnes_KPA171202-267747-genoscope
Propionibacterium_sp_oral_taxon_191_F0233-553198-genoscope
Pseudoalteromonas_haloplanktis_TAC125-326442-genoscope
Pseudomonas_UK4-452680-genoscope
Pseudomonas_aeruginosa-287-Uniprot
Pseudomonas_aeruginosa_LESB58-557722-genoscope
Pseudomonas_aeruginosa_PAO1-208964-genoscope
Pseudomonas_aeruginosa_UCBPP-PA14-208963-genoscope
Pseudomonas_entomophila_L48-384676-genoscope
Pseudomonas_fluorescens_Pf-5-220664-genoscope
Pseudomonas_fluorescens_Pf0-1-205922-genoscope
Pseudomonas_fluorescens_SBW25-216595-genoscope
Pseudomonas_putida_F1-351746-genoscope
Pseudomonas_putida_GB-1-76869-genoscope
Pseudomonas_putida_KT2440-160488-genoscope
Pseudomonas_putida_strain_KT2440-160488-Uniprot
Pseudomonas_syringae_pv._phaseolicola_1448A-264730-genoscope
Pseudomonas_syringae_pv._syringae_B728a-205918-genoscope
Pseudomonas_syringae_pv._tomato_DC3000-223283-genoscope
Psychrobacter_arcticus_273-4-259536-genoscope
Pyrobaculum_aerophilum_IM2-178306-genoscope
Pyrobaculum_arsenaticum_DSM_13514-340102-genoscope
Pyrobaculum_calidifontis_JCM_11548-410359-genoscope
Pyrobaculum_islandicum_DSM_4184-384616-genoscope
Pyrococcus_abyssi_GE5-272844-genoscope
Pyrococcus_furiosus_DSM_3638-186497-genoscope
Pyrococcus_horikoshii_OT3-70601-genoscope
Ralstonia_eutropha_H16-381666-genoscope
Ralstonia_eutropha_JMP134-264198-genoscope
Ralstonia_pickettii_12J-402626-genoscope
Ralstonia_solanacearum_CFBP2957-859656-genoscope
Ralstonia_solanacearum_CMR15-859655-genoscope
Ralstonia_solanacearum_GMI1000-267608-genoscope
Ralstonia_solanacearum_Ipo1609-305-genoscope
Ralstonia_solanacearum_Molk2-305-genoscope
Ralstonia_solanacearum_PSI07-859657-genoscope
Ralstonia_solanacearum_UW551-342110-genoscope
Ralstonia_syzygii_R24-907261-genoscope
Rhizobium_etli_CFN_42-347834-genoscope
Rhizobium_leguminosarum_bv._viciae_3841-216596-genoscope
Rhizobium_leguminosarum_bv_trifolii_WSM1325-395491-genoscope
Rhizobium_leguminosarum_bv_trifolii_WSM2304-395492-genoscope
Rhodobacter_sphaeroides_2.4.1-272943-genoscope
Rhodobacter_sphaeroides_ATCC_17025-349102-genoscope
Rhodobacter_sphaeroides_ATCC_17029-349101-genoscope
Rhodococcus_erythropolis_PR4_(=_NBRC_100887)-234621-genoscope
Rhodococcus_jostii_RHA1-101510-genoscope
Rhodococcus_opacus_B4-632772-genoscope
Rhodopseudomonas_palustris_CGA009-258594-genoscope
Rhodospirillum_centenum_SW;_ATCC_51521-414684-genoscope
Rhodospirillum_rubrum_ATCC_11170-269796-genoscope
Rickettsia_akari_Hartford-293614-genoscope
Rickettsia_bellii_OSU_85-389-391896-genoscope
Rickettsia_bellii_RML369-C-336407-genoscope
Rickettsia_canadensis_McKiel-293613-genoscope
Rickettsia_conorii_Malish_7-272944-genoscope
Rickettsia_felis_URRWXCal2-315456-genoscope
Rickettsia_massiliae_MTU5-416276-genoscope
Rickettsia_prowazekii_Madrid_E-272947-genoscope
Rickettsia_rickettsii_'Sheila_Smith'-392021-genoscope
Rickettsia_rickettsii_Iowa-452659-genoscope
Rickettsia_typhi_Wilmington-257363-genoscope
Roseobacter_denitrificans_OCh_114-375451-genoscope
Salinispora_arenicola_CNS-205-391037-genoscope
Salinispora_tropica_CNB-440-369723-genoscope
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_SC-B67-321314-genoscope
Salmonella_enterica_subsp._enterica_serovar_Typhi_CT18-220341-genoscope
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_SL1344-216597-genoscope
Salmonella_enterica_subsp_enterica_serovar_Typhi_Ty2-209261-genoscope
Salmonella_typhimurium_LT2-99287-genoscope
Segniliparus_rotundus_DSM_44985-640132-genoscope
Shewanella_oneidensis_MR-1-211586-genoscope
Shewanella_piezotolerans_WP3-225849-genoscope
Shewanella_violacea_DSS12-637905-genoscope
Shigella_boydii_Sb227-300268-genoscope
Shigella_dysenteriae_Sd197-300267-genoscope
Shigella_flexneri_2a_2457T-198215-genoscope
Shigella_flexneri_2a_301-198214-genoscope
Shigella_flexneri_5_8401-373384-genoscope
Shigella_sonnei_Ss046-300269-genoscope
Simkania_negevensis_Z-83561-genoscope
Sinorhizobium_medicae_WSM419-366394-genoscope
Sinorhizobium_meliloti_1021-266834-genoscope
Sodalis_glossinidius_'morsitans'-343509-genoscope
Spirosoma_linguale_DSM_74-504472-genoscope
Staphylococcus_aureus_subsp._aureus_JH1-359787-genoscope
Staphylococcus_aureus_subsp._aureus_Mu50-158878-genoscope
Staphylothermus_marinus_F1-399550-genoscope
Stenotrophomonas_maltophilia_K279a-522373-genoscope
Stigmatella_aurantiaca_DW4
Streptococcus_agalactiae_2603V
Streptococcus_agalactiae_A909-205921-genoscope
Streptococcus_agalactiae_NEM316-211110-genoscope
Streptococcus_mutans_UA159-210007-genoscope
Streptococcus_pneumoniae_D39-373153-genoscope
Streptococcus_pneumoniae_R6-171101-genoscope
Streptococcus_pneumoniae_TIGR4-170187-genoscope
Streptococcus_pyogenes_MGAS10394-286636-genoscope
Streptococcus_pyogenes_MGAS8232-186103-genoscope
Streptococcus_pyogenes_MGAS9429-370551-genoscope
Streptococcus_pyogenes_Manfredo-160491-genoscope
Streptococcus_pyogenes_SF370-160490-genoscope
Streptococcus_pyogenes_SSI-1-193567-genoscope
Streptococcus_sanguinis_SK36-388919-genoscope
Streptococcus_suis_05ZYH33-391295-genoscope
Streptococcus_suis_98HAH33-391296-genoscope
Streptococcus_thermophilus_CNRZ1066-299768-genoscope
Streptococcus_thermophilus_LMD-9-322159-genoscope
Streptococcus_thermophilus_LMG_18311-264199-genoscope
Streptomyces_avermitilis_MA-4680-227882-genoscope
Streptomyces_cattleya_NRRL_8057-1003195-genoscope
Streptomyces_coelicolor_A3(2)-100226-genoscope
Streptomyces_griseus_subsp_griseus_NBRC_13350-455632-genoscope
Sulfolobus_acidocaldarius_DSM_639-330779-genoscope
Sulfolobus_solfataricus_P2-273057-genoscope
Sulfolobus_tokodaii_7-273063-genoscope
Sulfurimonas_denitrificans_DSM_1251-326298-genoscope
Synechococcus_elongatus_PCC6301-269084-genoscope
Synechococcus_sp._CC9311-64471-genoscope
Synechococcus_sp._CC9605-110662-genoscope
Synechococcus_sp_JA-2-3B_a_2-13-321332-genoscope
Synechococcus_sp_JA-3-3Ab-321327-genoscope
Synechococcus_sp__PCC_7002-32049-genoscope
Synechocystis_sp._PCC_6803-1148-genoscope
Syntrophomonas_wolfei_subsp_wolfei_Goettingen-335541-genoscope
Syntrophus_aciditrophicus_SB-56780-genoscope
Thermanaerovibrio_acidaminovorans_DSM_6589-525903-genoscope
Thermococcus_kodakarensis_KOD1-69014-genoscope
Thermodesulfovibrio_yellowstonii_DSM_11347-289376-genoscope
Thermofilum_pendens_Hrk_5-368408-genoscope
Thermoplasma_acidophilum_DSM_1728-273075-genoscope
Thermoplasma_volcanium_GSS1-273116-genoscope
Thermosynechococcus_elongatus_BP-1-197221-genoscope
Thermotoga_maritima_MSB8-243274-genoscope
Thermus_thermophilus_HB8-300852-genoscope
Thiomicrospira_crunogena_XCL-2-317025-genoscope
Thiomonas_sp._3As-426114-genoscope
Treponema_denticola_ATCC_35405-243275-genoscope
Treponema_pallidum_subsp._pallidum_Nichols-243276-genoscope
Trichodesmium_erythraeum_IMS101-203124-genoscope
Tropheryma_whipplei_TW08_27-218496-genoscope
Tsukamurella_paurometabola_DSM_20162-521096-genoscope
Variovorax_paradoxus_S110-543728-genoscope
Vibrio_cholerae_M66-2-579112-genoscope
Vibrio_cholerae_MJ-1236-593588-genoscope
Vibrio_cholerae_N16961-243277-genoscope
Vibrio_cholerae_O395-345073-genoscope
Vibrio_fischeri_ES114-312309-genoscope
Vibrio_fischeri_MJ11-388396-genoscope
Vibrio_furnissii_NCTC_11218-903510-genoscope
Vibrio_harveyi_ATCC_BAA-1116-338187-genoscope
Vibrio_parahaemolyticus_RIMD_2210633-223926-genoscope
Vibrio_sp_EX25-150340-genoscope
Vibrio_splendidus_LGP32-29497-genoscope
Vibrio_vulnificus_CMCP6-216895-genoscope
Vibrio_vulnificus_MO6-24
Vibrio_vulnificus_YJ016-196600-genoscope
Waddlia_chondrophila_WSU_86-1044-716544-genoscope
Wigglesworthia_glossinidia_endosymbiont_of_Glossina_brevipalpis-36870-genoscope
Wolbachia_endosymbiont_TRS_of_Brugia_malayi-292805-genoscope
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel_wPip-570417-genoscope
Wolbachia_pipientis_wMel-163164-genoscope
Wolbachia_sp__Wolbachia_endosymbiont_of_Drosophila_simulans_wRi-66084-genoscope
Wolinella_succinogenes_DSM_1740-273121-genoscope
Xanthomonas_campestris_pv_musacearum_NCPPB4381-559737-genoscope
Xenorhabdus_bovienii-40576-genoscope
Xenorhabdus_nematophila-628-genoscope
Xylanimonas_cellulosilytica_DSM_15894-446471-genoscope
Xylella_fastidiosa_9a5c-160492-genoscope
Yersinia_enterocolitica_8081-393305-genoscope
Yersinia_pestis_Angola-349746-genoscope
Yersinia_pestis_Antiqua-360102-genoscope
Yersinia_pestis_CA88-4125-412420-genoscope
Yersinia_pestis_CO92-214092-genoscope
Yersinia_pestis_D106004-637382-genoscope
Yersinia_pestis_D182038-637385-genoscope
Yersinia_pestis_KIM-187410-genoscope
Yersinia_pestis_Nepal516-377628-genoscope
Yersinia_pestis_Pestoides_A-545431-genoscope
Yersinia_pestis_Pestoides_F-386656-genoscope
Yersinia_pestis__biovar_Orientalis_MG05-1020-404217-genoscope
Yersinia_pestis_biovar_Antiqua_B42003004-404215-genoscope
Yersinia_pestis_biovar_Antiqua_E1979001-360099-genoscope
Yersinia_pestis_biovar_Antiqua_UG05-0454-404218-genoscope
Yersinia_pestis_biovar_Mediaevalis_K1973002-404216-genoscope
Yersinia_pestis_biovar_Microtus_str._91001-229193-genoscope
Yersinia_pestis_biovar_Orientalis_F1991016-404214-genoscope
Yersinia_pestis_biovar_Orientalis_IP275-373665-genoscope
Yersinia_pestis_biovar_Orientalis_India_195-547047-genoscope
Yersinia_pestis_biovar_Orientalis_PEXU2-547046-genoscope
Yersinia_pseudotuberculosis_IP_31758-349747-genoscope
Yersinia_pseudotuberculosis_IP_32953-273123-genoscope
Yersinia_pseudotuberculosis_PB1
Yersinia_pseudotuberculosis_YPIII-502800-genoscope
Zunongwangia_profunda_SM-A87_SMA-87-655815-genoscope
uncultured_methanogenic_archaeon_RC-I-351160-genoscope
Select a Network
(mandatory)
---Networks---
KEGG_v550_RPAIR_notdirected
KEGG_v550_directed
MICROME_v15_directed
MetaCyc_v141_directed
Directed Network
Provide seeds
(mandatory)
: Genes,Compounds,ECs,Reactions (Minimun seed size: 2 characters)
Advanced parameters
Algorithm
kWalks + Takahashi-Matsuyama
Takahashi-Matsuyama
kWalks
iterative REA
kWalks + iterative REA
Preprocess
(for RPAIR networks only)
Postprocess
Iteration number
(for kWalks or hybrid algorithms only)
Hybrid algorithms only
Percentage of input network
Compute weights with kWalks
Output
display
email
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